AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404690 MtrunA17_Chr3g0127351 96.983 232 7 0 1 232 1 232 9.70e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404690 AT4G27700.1 78.409 176 38 0 52 227 42 217 6.34e-102 295

Find 108 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATCCCATGCTATT+TGG 0.204077 tig0023079:-52653 None:intergenic
CCTTAATGAGAGGAGGAAAT+TGG 0.210533 tig0023079:-51327 None:intergenic
CCAATTTCCTCCTCTCATTA+AGG 0.215936 tig0023079:+51327 Msa1404690:five_prime_UTR
GCTTACTTGCTAGTCCTTAA+TGG 0.218285 tig0023079:+54591 Msa1404690:CDS
TTTAATCATTATTATGTCTT+TGG 0.237767 tig0023079:-52560 None:intergenic
ATTTAGGTGAATTAGGTTTC+AGG 0.245763 tig0023079:+52090 Msa1404690:five_prime_UTR
CAATTAACGTGCAAGTTTAC+AGG 0.264259 tig0023079:+53729 Msa1404690:CDS
TTGATCACGTGTACCTTCTA+AGG 0.292255 tig0023079:-52922 None:intergenic
TCAGCGACTTCTCACTTTAG+AGG 0.294655 tig0023079:-51929 None:intergenic
ATTGAATCAGTGTGCTTTAG+TGG 0.304864 tig0023079:-54935 Msa1404700:intron
AGACGTTGTTGTACCCATTA+AGG 0.314913 tig0023079:-54605 Msa1404700:intron
GTGTATCAGCATCCTCATTA+TGG 0.316111 tig0023079:-54741 Msa1404700:intron
GGAGGGGAGGTAATGGTTAA+AGG 0.323644 tig0023079:-51821 None:intergenic
GATGCACATGAACCATGTTT+TGG 0.337165 tig0023079:+54910 Msa1404690:three_prime_UTR
ACCTCCTTGAACTCTGCTTC+TGG 0.359245 tig0023079:-53524 Msa1404700:intron
CCATATCTTCTGAATAGATA+TGG 0.364152 tig0023079:+51883 Msa1404690:five_prime_UTR
ACTTGCACGTTAATTGCATC+TGG 0.366259 tig0023079:-53722 Msa1404700:intron
CTTACTTGCTAGTCCTTAAT+GGG 0.367095 tig0023079:+54592 Msa1404690:CDS
CCATATCTATTCAGAAGATA+TGG 0.367191 tig0023079:-51883 None:intergenic
TTCAAATAAGATGATGGTAT+TGG 0.384462 tig0023079:-52273 None:intergenic
CCACATCATATTTACAATCC+TGG 0.388007 tig0023079:+52892 Msa1404690:CDS
AAATGCAAATGCAGCACGTC+TGG 0.405189 tig0023079:-53783 Msa1404700:intron
TGTAAAGCCCACCTTCTAGA+TGG 0.405275 tig0023079:-54629 Msa1404700:intron
TGAAGGCGCAGAGCTTCCTT+TGG 0.408083 tig0023079:-53467 Msa1404700:intron
ATAATAGTAGCTTGCTCAGC+AGG 0.410454 tig0023079:+53969 Msa1404690:CDS
TGCCACAAAATCTGAATTTG+TGG 0.412157 tig0023079:-52683 None:intergenic
AGTGTAAGTAGTTAATTCAA+TGG 0.415530 tig0023079:-52796 None:intergenic
TCCTGGGTACCTTCCTTAGA+AGG 0.423883 tig0023079:+52909 Msa1404690:CDS
CTTAATGAGAGGAGGAAATT+GGG 0.429363 tig0023079:-51326 None:intergenic
TCAGGGACTCACCACGGTTA+AGG 0.430614 tig0023079:+52108 Msa1404690:five_prime_UTR
TTTACAGGCTTATAAAAGAA+TGG 0.431650 tig0023079:+53744 Msa1404690:CDS
TTTAGGTGAATTAGGTTTCA+GGG 0.440880 tig0023079:+52091 Msa1404690:five_prime_UTR
GCACGGATAATTCTATTGAA+TGG 0.443072 tig0023079:+51858 Msa1404690:five_prime_UTR
TGCCACAAGGTCAACAATCT+AGG 0.445952 tig0023079:+54018 Msa1404690:CDS
AAGAAAGTCAATCAAATTCA+AGG 0.458401 tig0023079:+51782 Msa1404690:five_prime_UTR
AACGTGAAAGAGTTGTTTAG+AGG 0.460726 tig0023079:-52053 None:intergenic
GTTAATTCAATGGAAGTACT+TGG 0.463482 tig0023079:-52786 None:intergenic
AAGGCCAGAAGCAGAGTTCA+AGG 0.467849 tig0023079:+53520 Msa1404690:CDS
GATGAATCGCATCTGACAAA+TGG 0.470690 tig0023079:-51652 None:intergenic
TAGAAGGTGGGCTTTACAAA+TGG 0.471246 tig0023079:+54634 Msa1404690:CDS
TTGAAATGTAAACGTTGAAC+TGG 0.478265 tig0023079:+54783 Msa1404690:three_prime_UTR
CAGATACCTGGTGACTTGGC+TGG 0.485918 tig0023079:-53044 None:intergenic
ATTGAGTTCAAATCCCTTCG+AGG 0.492675 tig0023079:+52196 Msa1404690:five_prime_UTR
AGGTAATAGCTGAAGAAGAA+TGG 0.495632 tig0023079:+53144 Msa1404690:intron
ACGATTGTTATTAAGAAAAG+TGG 0.497171 tig0023079:-51288 None:intergenic
AAGTACTAGTGTCAAGGCAG+AGG 0.501859 tig0023079:+52514 Msa1404690:five_prime_UTR
CACATCATATTTACAATCCT+GGG 0.506172 tig0023079:+52893 Msa1404690:CDS
CTTGCACGTTAATTGCATCT+GGG 0.507566 tig0023079:-53721 Msa1404700:intron
GTACACGTGATCAAAATTCA+TGG 0.508681 tig0023079:+52931 Msa1404690:CDS
CATCTTACACTTGATAAACT+CGG 0.509099 tig0023079:-53837 Msa1404700:intron
CAATAACTTGAGTTAATACA+TGG 0.509127 tig0023079:-52177 None:intergenic
GACTATTACTTGAATTAACC+AGG 0.510124 tig0023079:+52232 Msa1404690:five_prime_UTR
TTGTCTAAAGATTGCCTCCA+TGG 0.511374 tig0023079:+54843 Msa1404690:three_prime_UTR
ATCTTACACTTGATAAACTC+GGG 0.514723 tig0023079:-53836 Msa1404700:intron
ACTCCTCTGCTACAGCTGGC+AGG 0.515472 tig0023079:-54668 Msa1404700:intron
AGCACGTCTGGCAATGTCCC+AGG 0.517639 tig0023079:-53771 Msa1404700:intron
TCCATGGCGTTAACATGGAA+TGG 0.522426 tig0023079:+54859 Msa1404690:three_prime_UTR
TTATGGTCAAAACTAGGTCC+AGG 0.530808 tig0023079:-54724 Msa1404700:intron
TTTCTCAGCATGCACAATGT+TGG 0.532211 tig0023079:-54701 Msa1404700:intron
GCTTTAGTGGTTCCAAAACA+TGG 0.534300 tig0023079:-54922 Msa1404700:intron
TATATTTAAAACATAAACAT+AGG 0.535516 tig0023079:+52482 Msa1404690:five_prime_UTR
CTGTTGTCAAGTGAGTTGTT+TGG 0.539637 tig0023079:-52747 None:intergenic
GCTTTACAAATGGTTTAAAG+AGG 0.544902 tig0023079:+54644 Msa1404690:CDS
CTGATACACAAAGGACAGAA+TGG 0.545138 tig0023079:+54755 Msa1404690:three_prime_UTR
AACAACGTCTTCCATCTAGA+AGG 0.547666 tig0023079:+54618 Msa1404690:CDS
ATGAGGATATCCAAATAGCA+TGG 0.549414 tig0023079:+52643 Msa1404690:five_prime_UTR
TTATAAAAGAATGGACAGCC+TGG 0.552760 tig0023079:+53753 Msa1404690:CDS
ATTCACTCCTCTGCTACAGC+TGG 0.554886 tig0023079:-54672 Msa1404700:intron
TTGCCTCCATGGCGTTAACA+TGG 0.557472 tig0023079:+54854 Msa1404690:three_prime_UTR
TCCTCATTATGGTCAAAACT+AGG 0.558607 tig0023079:-54730 Msa1404700:intron
AGAACAGATACCTGGTGACT+TGG 0.561851 tig0023079:-53048 None:intergenic
ATGAGAGGAGGAAATTGGGA+AGG 0.563624 tig0023079:-51322 None:intergenic
TGAGACTGAGCTTCAAAGCA+TGG 0.566115 tig0023079:+52839 Msa1404690:exon
TTAATTCAATGGAAGTACTT+GGG 0.569087 tig0023079:-52785 None:intergenic
AGCGTTTCCTTAATGAGAGG+AGG 0.569738 tig0023079:-51334 None:intergenic
GAAATTGGGAAGGAAGAGCT+TGG 0.576402 tig0023079:-51312 None:intergenic
TTGCACGTTAATTGCATCTG+GGG 0.578396 tig0023079:-53720 Msa1404700:intron
GGACCTGCCAGCTGTAGCAG+AGG 0.578953 tig0023079:+54665 Msa1404690:CDS
ATTGTGCATGCTGAGAAACC+TGG 0.579123 tig0023079:+54706 Msa1404690:three_prime_UTR
ACCATTCCATGTTAACGCCA+TGG 0.579175 tig0023079:-54860 Msa1404700:intron
CTCGTTGAATACTAGTCCAA+TGG 0.583941 tig0023079:+52143 Msa1404690:five_prime_UTR
AATAGAAAGTACTAGTGTCA+AGG 0.584964 tig0023079:+52508 Msa1404690:five_prime_UTR
ACAAAACCAGCCAAGTCACC+AGG 0.585038 tig0023079:+53038 Msa1404690:CDS
AACGTCTTCCATCTAGAAGG+TGG 0.586598 tig0023079:+54621 Msa1404690:CDS
TACCTAGATTGTTGACCTTG+TGG 0.587500 tig0023079:-54020 Msa1404700:intron
AAAACATGGTTCATGTGCAT+CGG 0.587851 tig0023079:-54908 Msa1404700:intron
CACAACAGAACTTTGCAAGA+GGG 0.596863 tig0023079:+52994 Msa1404690:CDS
TTGAGCGTTTCCTTAATGAG+AGG 0.599603 tig0023079:-51337 None:intergenic
AAATGTGCATCTGCGTATTG+TGG 0.599697 tig0023079:-52713 None:intergenic
TATCGTATCAAAGTAAGCAA+AGG 0.603334 tig0023079:+52585 Msa1404690:five_prime_UTR
TCACAACAGAACTTTGCAAG+AGG 0.603824 tig0023079:+52993 Msa1404690:CDS
TGAGGATATCCAAATAGCAT+GGG 0.605804 tig0023079:+52644 Msa1404690:five_prime_UTR
AGTACTAGTGTCAAGGCAGA+GGG 0.610650 tig0023079:+52515 Msa1404690:five_prime_UTR
CTTCTGAATAGATATGGCAA+TGG 0.613624 tig0023079:+51889 Msa1404690:five_prime_UTR
TATAAAAGAATGGACAGCCT+GGG 0.617323 tig0023079:+53754 Msa1404690:CDS
ACCTTCTAAGGAAGGTACCC+AGG 0.624704 tig0023079:-52910 None:intergenic
ACGTCTTCCATCTAGAAGGT+GGG 0.626570 tig0023079:+54622 Msa1404690:CDS
CCAGGATTGTAAATATGATG+TGG 0.629329 tig0023079:-52892 None:intergenic
TGCACGTTAATTGCATCTGG+GGG 0.637849 tig0023079:-53719 Msa1404700:intron
ATAGTAGCTTGCTCAGCAGG+AGG 0.650338 tig0023079:+53972 Msa1404690:CDS
TAGGTTTCAGGGACTCACCA+CGG 0.660400 tig0023079:+52102 Msa1404690:five_prime_UTR
TCACGTGTACCTTCTAAGGA+AGG 0.660526 tig0023079:-52918 None:intergenic
CCAACACAAAATCTGCCACA+AGG 0.681974 tig0023079:+54005 Msa1404690:CDS
ATGAGGATGCTGATACACAA+AGG 0.685477 tig0023079:+54746 Msa1404690:three_prime_UTR
ATTCCATGTTAACGCCATGG+AGG 0.719899 tig0023079:-54857 Msa1404700:intron
CTTGAGATGTGCCTTAACCG+TGG 0.723324 tig0023079:-52119 None:intergenic
GCCAGAAGCAGAGTTCAAGG+AGG 0.748938 tig0023079:+53523 Msa1404690:CDS
TACTTGGGATCAGACTACTG+CGG 0.756375 tig0023079:-52770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGATATGAAAAAATTT+AGG + tig0023079:52074-52093 Msa1404690:five_prime_UTR 10.0%
!!! TATATTTAAAACATAAACAT+AGG + tig0023079:52482-52501 Msa1404690:five_prime_UTR 10.0%
!!! ACTGTTTTATTTTTTTTGTA+GGG - tig0023079:52417-52436 None:intergenic 15.0%
!!! TACTGTTTTATTTTTTTTGT+AGG - tig0023079:52418-52437 None:intergenic 15.0%
!! TTTAATCATTATTATGTCTT+TGG - tig0023079:52563-52582 None:intergenic 15.0%
!! GTTTAATTGATTGTAATATA+GGG + tig0023079:53641-53660 Msa1404690:intron 15.0%
!!! ATGTATGTTTTTTTAGCATA+TGG + tig0023079:51425-51444 Msa1404690:intron 20.0%
!!! ATTAACTTACTGTTTCTATT+AGG + tig0023079:51581-51600 Msa1404690:intron 20.0%
!!! AGAGTTTTTTTTATTGATTG+AGG + tig0023079:51978-51997 Msa1404690:five_prime_UTR 20.0%
!! TGAAAAAATTTAGGTGAATT+AGG + tig0023079:52083-52102 Msa1404690:five_prime_UTR 20.0%
!!! TATCAAACTTTTTAAAAACC+TGG - tig0023079:52253-52272 None:intergenic 20.0%
!!! TTTTACTTCAAATAAGATGA+TGG - tig0023079:52282-52301 None:intergenic 20.0%
!! AGGAAAAAGAAAAGAAAAAA+AGG + tig0023079:52605-52624 Msa1404690:five_prime_UTR 20.0%
!! AACTAAAAGATTGAAATGTT+TGG + tig0023079:53311-53330 Msa1404690:intron 20.0%
!!! CAAAATTATTTTCTTTCTGA+AGG - tig0023079:53487-53506 Msa1404700:intron 20.0%
!! GGTTTAATTGATTGTAATAT+AGG + tig0023079:53640-53659 Msa1404690:intron 20.0%
!! AACTAAATATTTGATTCATG+CGG + tig0023079:53910-53929 Msa1404690:intron 20.0%
!!! CAAAGACATTTAAATTTTAG+AGG + tig0023079:54277-54296 Msa1404690:intron 20.0%
!! TTATATCACATGTAACAAAT+TGG - tig0023079:54342-54361 Msa1404700:intron 20.0%
!!! AAGACAAATTAGTTCTTTAT+CGG + tig0023079:54381-54400 Msa1404690:intron 20.0%
!! ATAATATTCAAATCATCGAT+TGG + tig0023079:54521-54540 Msa1404690:intron 20.0%
!! ACGATTGTTATTAAGAAAAG+TGG - tig0023079:51291-51310 None:intergenic 25.0%
!! TGTTTTATGCTTGAAAACAA+TGG - tig0023079:51390-51409 None:intergenic 25.0%
!!! ATTGTTTTCAAGCATAAAAC+AGG + tig0023079:51389-51408 Msa1404690:five_prime_UTR 25.0%
!!! TATTTTGCATAATTCGAGTT+AGG + tig0023079:51464-51483 Msa1404690:intron 25.0%
!!! GAGTTAGGCTTATTATTTTT+TGG + tig0023079:51479-51498 Msa1404690:intron 25.0%
!!! TTACTGTTTCTATTAGGTAT+GGG + tig0023079:51587-51606 Msa1404690:intron 25.0%
! AAGAAAGTCAATCAAATTCA+AGG + tig0023079:51782-51801 Msa1404690:five_prime_UTR 25.0%
!!! TGCTTGAAAATTTTAAAGGA+GGG - tig0023079:51841-51860 None:intergenic 25.0%
!!! TCCTTTAAAATTTTCAAGCA+CGG + tig0023079:51841-51860 Msa1404690:five_prime_UTR 25.0%
! CAATAACTTGAGTTAATACA+TGG - tig0023079:52180-52199 None:intergenic 25.0%
!! TTCAAATAAGATGATGGTAT+TGG - tig0023079:52276-52295 None:intergenic 25.0%
!!! TTAATTCAATGGAAGTACTT+GGG - tig0023079:52788-52807 None:intergenic 25.0%
! AGTGTAAGTAGTTAATTCAA+TGG - tig0023079:52799-52818 None:intergenic 25.0%
!!! TGTTGTGATTTTTGAGAATT+GGG - tig0023079:52981-53000 None:intergenic 25.0%
! AAACTTAACTTCACTTTCTT+TGG + tig0023079:53121-53140 Msa1404690:intron 25.0%
! AATATAAATGCTAAAGATGC+AGG - tig0023079:53264-53283 Msa1404700:intron 25.0%
! CTATTTACTAATAAACAGCA+AGG + tig0023079:53350-53369 Msa1404690:intron 25.0%
! TATCTTTGATCTAATGTTGT+AGG + tig0023079:53430-53449 Msa1404690:intron 25.0%
!! ATTTTGTGATTCTTGATGTA+AGG + tig0023079:53501-53520 Msa1404690:CDS 25.0%
! AAAATGTAACATGAATGTAC+AGG - tig0023079:53593-53612 Msa1404700:intron 25.0%
! AGAAGGAAAAAAAAAACTGA+TGG + tig0023079:53669-53688 Msa1404690:intron 25.0%
! TTTACAGGCTTATAAAAGAA+TGG + tig0023079:53744-53763 Msa1404690:CDS 25.0%
!!! ACATTTAAATTTTAGAGGAC+AGG + tig0023079:54282-54301 Msa1404690:intron 25.0%
! TTTCATAATTGCATGAAAAG+TGG - tig0023079:54500-54519 Msa1404700:intron 25.0%
!! CTTACTGTTTCTATTAGGTA+TGG + tig0023079:51586-51605 Msa1404690:intron 30.0%
!! GCTTGAAAATTTTAAAGGAG+GGG - tig0023079:51840-51859 None:intergenic 30.0%
!! GTGCTTGAAAATTTTAAAGG+AGG - tig0023079:51842-51861 None:intergenic 30.0%
! TCCGTGCTTGAAAATTTTAA+AGG - tig0023079:51845-51864 None:intergenic 30.0%
CCATATCTATTCAGAAGATA+TGG - tig0023079:51886-51905 None:intergenic 30.0%
CCATATCTTCTGAATAGATA+TGG + tig0023079:51883-51902 Msa1404690:five_prime_UTR 30.0%
ATTTAGGTGAATTAGGTTTC+AGG + tig0023079:52090-52109 Msa1404690:five_prime_UTR 30.0%
TTTAGGTGAATTAGGTTTCA+GGG + tig0023079:52091-52110 Msa1404690:five_prime_UTR 30.0%
GACTATTACTTGAATTAACC+AGG + tig0023079:52232-52251 Msa1404690:five_prime_UTR 30.0%
!! AATAGAAAGTACTAGTGTCA+AGG + tig0023079:52508-52527 Msa1404690:five_prime_UTR 30.0%
TATCGTATCAAAGTAAGCAA+AGG + tig0023079:52585-52604 Msa1404690:five_prime_UTR 30.0%
! GGACAAAAATGATGATAATG+AGG + tig0023079:52626-52645 Msa1404690:five_prime_UTR 30.0%
!! GTTAATTCAATGGAAGTACT+TGG - tig0023079:52789-52808 None:intergenic 30.0%
CACATCATATTTACAATCCT+GGG + tig0023079:52893-52912 Msa1404690:CDS 30.0%
!! CTGTTGTGATTTTTGAGAAT+TGG - tig0023079:52982-53001 None:intergenic 30.0%
!! AAATCTTTAAAGTGCTGTGA+CGG - tig0023079:53096-53115 None:intergenic 30.0%
! GTATTCTTATTTGTGCATTC+AGG - tig0023079:53242-53261 Msa1404700:three_prime_UTR 30.0%
TACTAATAAACAGCAAGGAT+CGG + tig0023079:53355-53374 Msa1404690:intron 30.0%
AATGTTGTAGGTAAAAAGTG+TGG + tig0023079:53442-53461 Msa1404690:intron 30.0%
! TGTAATATAGGGTACTAAGA+AGG + tig0023079:53652-53671 Msa1404690:intron 30.0%
ATTTGTCTATGATGAATGCA+GGG + tig0023079:53692-53711 Msa1404690:intron 30.0%
!!! GCATTTTTTGGTATTTTCTC+TGG + tig0023079:53800-53819 Msa1404690:CDS 30.0%
ATCTTACACTTGATAAACTC+GGG - tig0023079:53839-53858 Msa1404700:intron 30.0%
CATCTTACACTTGATAAACT+CGG - tig0023079:53840-53859 Msa1404700:intron 30.0%
TGAGCAATATTGAAAAACCA+GGG - tig0023079:54093-54112 Msa1404700:intron 30.0%
ATGAGCAATATTGAAAAACC+AGG - tig0023079:54094-54113 Msa1404700:intron 30.0%
AAGAATATACAGACCAAAAC+TGG + tig0023079:54160-54179 Msa1404690:intron 30.0%
AATGTCTTTGAATCTGATGT+TGG - tig0023079:54267-54286 Msa1404700:intron 30.0%
! TGTCTTTTTATTACTCTCTC+TGG - tig0023079:54367-54386 Msa1404700:intron 30.0%
! TTATCGGCTAAAATACACAA+TGG + tig0023079:54397-54416 Msa1404690:intron 30.0%
CATGCAATCCAAGTTATTAA+TGG - tig0023079:54429-54448 Msa1404700:intron 30.0%
CATTAATAACTTGGATTGCA+TGG + tig0023079:54427-54446 Msa1404690:intron 30.0%
! TCACATTTTTGTACTTTCGT+AGG + tig0023079:54556-54575 Msa1404690:intron 30.0%
GCTTTACAAATGGTTTAAAG+AGG + tig0023079:54644-54663 Msa1404690:CDS 30.0%
TTGAAATGTAAACGTTGAAC+TGG + tig0023079:54783-54802 Msa1404690:three_prime_UTR 30.0%
CTTAATGAGAGGAGGAAATT+GGG - tig0023079:51329-51348 None:intergenic 35.0%
!! TGAAAATTTTAAAGGAGGGG+AGG - tig0023079:51837-51856 None:intergenic 35.0%
GCACGGATAATTCTATTGAA+TGG + tig0023079:51858-51877 Msa1404690:five_prime_UTR 35.0%
CTTCTGAATAGATATGGCAA+TGG + tig0023079:51889-51908 Msa1404690:five_prime_UTR 35.0%
AACGTGAAAGAGTTGTTTAG+AGG - tig0023079:52056-52075 None:intergenic 35.0%
ATGAGGATATCCAAATAGCA+TGG + tig0023079:52643-52662 Msa1404690:five_prime_UTR 35.0%
TGAGGATATCCAAATAGCAT+GGG + tig0023079:52644-52663 Msa1404690:five_prime_UTR 35.0%
TTTAGGAATCCCATGCTATT+TGG - tig0023079:52656-52675 None:intergenic 35.0%
! GAATTTGTGGTCGATGTTTT+AGG - tig0023079:52673-52692 None:intergenic 35.0%
! GACCACAAATTCAGATTTTG+TGG + tig0023079:52681-52700 Msa1404690:five_prime_UTR 35.0%
TGCCACAAAATCTGAATTTG+TGG - tig0023079:52686-52705 None:intergenic 35.0%
CCAGGATTGTAAATATGATG+TGG - tig0023079:52895-52914 None:intergenic 35.0%
CCACATCATATTTACAATCC+TGG + tig0023079:52892-52911 Msa1404690:CDS 35.0%
GTACACGTGATCAAAATTCA+TGG + tig0023079:52931-52950 Msa1404690:CDS 35.0%
CTTAACTTCACTTTCTTTGG+AGG + tig0023079:53124-53143 Msa1404690:intron 35.0%
AGGTAATAGCTGAAGAAGAA+TGG + tig0023079:53144-53163 Msa1404690:intron 35.0%
AGAATTGCTGCTGCAAAAAA+GGG + tig0023079:53178-53197 Msa1404690:CDS 35.0%
ACATGAATGTACAGGTACAT+TGG - tig0023079:53585-53604 Msa1404700:intron 35.0%
GATTTGTCTATGATGAATGC+AGG + tig0023079:53691-53710 Msa1404690:intron 35.0%
CAATTAACGTGCAAGTTTAC+AGG + tig0023079:53729-53748 Msa1404690:CDS 35.0%
TTATAAAAGAATGGACAGCC+TGG + tig0023079:53753-53772 Msa1404690:CDS 35.0%
TATAAAAGAATGGACAGCCT+GGG + tig0023079:53754-53773 Msa1404690:CDS 35.0%
AATTCAAGAAATGCACGTTG+AGG - tig0023079:53869-53888 Msa1404700:intron 35.0%
! TCTAATTTTTCATCGACAGC+TGG - tig0023079:53936-53955 Msa1404700:intron 35.0%
ATATACAGACCAAAACTGGT+TGG + tig0023079:54164-54183 Msa1404690:intron 35.0%
! AAATTGTTGCCAACCAGTTT+TGG - tig0023079:54176-54195 Msa1404700:intron 35.0%
AAAGTGCAAACACACTCAAA+AGG - tig0023079:54240-54259 Msa1404700:intron 35.0%
ATCACATGTAACAAATTGGC+AGG - tig0023079:54338-54357 Msa1404700:intron 35.0%
! CTTACTTGCTAGTCCTTAAT+GGG + tig0023079:54592-54611 Msa1404690:CDS 35.0%
!!! ACCTAGTTTTGACCATAATG+AGG + tig0023079:54729-54748 Msa1404690:three_prime_UTR 35.0%
TCCTCATTATGGTCAAAACT+AGG - tig0023079:54733-54752 Msa1404700:intron 35.0%
AAAACATGGTTCATGTGCAT+CGG - tig0023079:54911-54930 Msa1404700:intron 35.0%
ATTGAATCAGTGTGCTTTAG+TGG - tig0023079:54938-54957 Msa1404700:intron 35.0%
CCTTAATGAGAGGAGGAAAT+TGG - tig0023079:51330-51349 None:intergenic 40.0%
CCAATTTCCTCCTCTCATTA+AGG + tig0023079:51327-51346 Msa1404690:five_prime_UTR 40.0%
TTGAGCGTTTCCTTAATGAG+AGG - tig0023079:51340-51359 None:intergenic 40.0%
AGATGCTCAGAATATCCCAA+TGG + tig0023079:51534-51553 Msa1404690:intron 40.0%
GATGCTCAGAATATCCCAAT+GGG + tig0023079:51535-51554 Msa1404690:intron 40.0%
GATGAATCGCATCTGACAAA+TGG - tig0023079:51655-51674 None:intergenic 40.0%
!! TTTTAAAGGAGGGGAGGTAA+TGG - tig0023079:51831-51850 None:intergenic 40.0%
CTCGTTGAATACTAGTCCAA+TGG + tig0023079:52143-52162 Msa1404690:five_prime_UTR 40.0%
! CATGGCAACACTTTTACCAT+TGG - tig0023079:52162-52181 None:intergenic 40.0%
ATTGAGTTCAAATCCCTTCG+AGG + tig0023079:52196-52215 Msa1404690:five_prime_UTR 40.0%
! ATTTTACAGCTGTCCTCGAA+GGG - tig0023079:52212-52231 None:intergenic 40.0%
AAATGTGCATCTGCGTATTG+TGG - tig0023079:52716-52735 None:intergenic 40.0%
CTGTTGTCAAGTGAGTTGTT+TGG - tig0023079:52750-52769 None:intergenic 40.0%
TTGATCACGTGTACCTTCTA+AGG - tig0023079:52925-52944 None:intergenic 40.0%
TCACAACAGAACTTTGCAAG+AGG + tig0023079:52993-53012 Msa1404690:CDS 40.0%
CACAACAGAACTTTGCAAGA+GGG + tig0023079:52994-53013 Msa1404690:CDS 40.0%
AGTAACTCAGAACAGATACC+TGG - tig0023079:53059-53078 None:intergenic 40.0%
GAGAATTGCTGCTGCAAAAA+AGG + tig0023079:53177-53196 Msa1404690:CDS 40.0%
TACATTGGAGCTGGAAAACA+AGG - tig0023079:53570-53589 Msa1404700:intron 40.0%
! CATTTTCTGTGTCTCTCTTG+TGG + tig0023079:53607-53626 Msa1404690:intron 40.0%
TTGCACGTTAATTGCATCTG+GGG - tig0023079:53723-53742 Msa1404700:intron 40.0%
CTTGCACGTTAATTGCATCT+GGG - tig0023079:53724-53743 Msa1404700:intron 40.0%
ACTTGCACGTTAATTGCATC+TGG - tig0023079:53725-53744 Msa1404700:intron 40.0%
!!! CGTGCTGCATTTGCATTTTT+TGG + tig0023079:53788-53807 Msa1404690:CDS 40.0%
!! ATAATAGTAGCTTGCTCAGC+AGG + tig0023079:53969-53988 Msa1404690:CDS 40.0%
TACCTAGATTGTTGACCTTG+TGG - tig0023079:54023-54042 Msa1404700:intron 40.0%
! ATGAAAGCATGCTCAGGAAA+GGG - tig0023079:54068-54087 Msa1404700:intron 40.0%
!! GGATCGGTTTGCGTAAATAA+TGG - tig0023079:54210-54229 Msa1404700:intron 40.0%
TGCAAACACACTCAAAAGGT+GGG - tig0023079:54236-54255 Msa1404700:intron 40.0%
CATGTAACAAATTGGCAGGA+TGG - tig0023079:54334-54353 Msa1404700:intron 40.0%
CGGCTAAAATACACAATGGA+AGG + tig0023079:54401-54420 Msa1404690:intron 40.0%
!! GGAAGGTGCCATTAATAACT+TGG + tig0023079:54418-54437 Msa1404690:intron 40.0%
TGATATAGCTGAAAGCTGCA+TGG + tig0023079:54468-54487 Msa1404690:intron 40.0%
! GCTTACTTGCTAGTCCTTAA+TGG + tig0023079:54591-54610 Msa1404690:CDS 40.0%
AGACGTTGTTGTACCCATTA+AGG - tig0023079:54608-54627 Msa1404700:intron 40.0%
AACAACGTCTTCCATCTAGA+AGG + tig0023079:54618-54637 Msa1404690:CDS 40.0%
! TAGAAGGTGGGCTTTACAAA+TGG + tig0023079:54634-54653 Msa1404690:CDS 40.0%
TTTCTCAGCATGCACAATGT+TGG - tig0023079:54704-54723 Msa1404700:intron 40.0%
TTATGGTCAAAACTAGGTCC+AGG - tig0023079:54727-54746 Msa1404700:intron 40.0%
GTGTATCAGCATCCTCATTA+TGG - tig0023079:54744-54763 Msa1404700:intron 40.0%
ATGAGGATGCTGATACACAA+AGG + tig0023079:54746-54765 Msa1404690:three_prime_UTR 40.0%
CTGATACACAAAGGACAGAA+TGG + tig0023079:54755-54774 Msa1404690:three_prime_UTR 40.0%
TTGTCTAAAGATTGCCTCCA+TGG + tig0023079:54843-54862 Msa1404690:three_prime_UTR 40.0%
! GATGCACATGAACCATGTTT+TGG + tig0023079:54910-54929 Msa1404690:three_prime_UTR 40.0%
GCTTTAGTGGTTCCAAAACA+TGG - tig0023079:54925-54944 Msa1404700:intron 40.0%
GAAATTGGGAAGGAAGAGCT+TGG - tig0023079:51315-51334 None:intergenic 45.0%
ATGAGAGGAGGAAATTGGGA+AGG - tig0023079:51325-51344 None:intergenic 45.0%
AGCGTTTCCTTAATGAGAGG+AGG - tig0023079:51337-51356 None:intergenic 45.0%
!! TATCCCAATGGGCTAAAAGC+AGG + tig0023079:51546-51565 Msa1404690:intron 45.0%
!! ATCCCAATGGGCTAAAAGCA+GGG + tig0023079:51547-51566 Msa1404690:intron 45.0%
!! ATCCCTGCTTTTAGCCCATT+GGG - tig0023079:51552-51571 None:intergenic 45.0%
!! AATCCCTGCTTTTAGCCCAT+TGG - tig0023079:51553-51572 None:intergenic 45.0%
TCAGCGACTTCTCACTTTAG+AGG - tig0023079:51932-51951 None:intergenic 45.0%
! CATTTTACAGCTGTCCTCGA+AGG - tig0023079:52213-52232 None:intergenic 45.0%
AAGTACTAGTGTCAAGGCAG+AGG + tig0023079:52514-52533 Msa1404690:five_prime_UTR 45.0%
AGTACTAGTGTCAAGGCAGA+GGG + tig0023079:52515-52534 Msa1404690:five_prime_UTR 45.0%
TACTTGGGATCAGACTACTG+CGG - tig0023079:52773-52792 None:intergenic 45.0%
TGAGACTGAGCTTCAAAGCA+TGG + tig0023079:52839-52858 Msa1404690:exon 45.0%
! TCACGTGTACCTTCTAAGGA+AGG - tig0023079:52921-52940 None:intergenic 45.0%
AGAACAGATACCTGGTGACT+TGG - tig0023079:53051-53070 None:intergenic 45.0%
! TGTGCATTCAGGAGAGTATG+CGG - tig0023079:53231-53250 Msa1404700:three_prime_UTR 45.0%
! GGTAAAAAGTGTGGAGCCAA+AGG + tig0023079:53451-53470 Msa1404690:intron 45.0%
ATGTACAGGTACATTGGAGC+TGG - tig0023079:53579-53598 Msa1404700:intron 45.0%
TCTCTCTTGTGGCTTCTACT+TGG + tig0023079:53618-53637 Msa1404690:intron 45.0%
CTCTCTTGTGGCTTCTACTT+GGG + tig0023079:53619-53638 Msa1404690:intron 45.0%
TGCACGTTAATTGCATCTGG+GGG - tig0023079:53722-53741 Msa1404700:intron 45.0%
AAATGCAAATGCAGCACGTC+TGG - tig0023079:53786-53805 Msa1404700:intron 45.0%
! CCTTGTGGCAGATTTTGTGT+TGG - tig0023079:54008-54027 Msa1404700:intron 45.0%
CCAACACAAAATCTGCCACA+AGG + tig0023079:54005-54024 Msa1404690:CDS 45.0%
TGCCACAAGGTCAACAATCT+AGG + tig0023079:54018-54037 Msa1404690:CDS 45.0%
! GATGAAAGCATGCTCAGGAA+AGG - tig0023079:54069-54088 Msa1404700:intron 45.0%
! ACACACTCAAAAGGTGGGTT+GGG - tig0023079:54231-54250 Msa1404700:intron 45.0%
AACACACTCAAAAGGTGGGT+TGG - tig0023079:54232-54251 Msa1404700:intron 45.0%
GTGCAAACACACTCAAAAGG+TGG - tig0023079:54237-54256 Msa1404700:intron 45.0%
AACGTCTTCCATCTAGAAGG+TGG + tig0023079:54621-54640 Msa1404690:CDS 45.0%
ACGTCTTCCATCTAGAAGGT+GGG + tig0023079:54622-54641 Msa1404690:CDS 45.0%
TGTAAAGCCCACCTTCTAGA+TGG - tig0023079:54632-54651 Msa1404700:intron 45.0%
ATTGTGCATGCTGAGAAACC+TGG + tig0023079:54706-54725 Msa1404690:three_prime_UTR 45.0%
ATTCCATGTTAACGCCATGG+AGG - tig0023079:54860-54879 Msa1404700:intron 45.0%
TCCATGGCGTTAACATGGAA+TGG + tig0023079:54859-54878 Msa1404690:three_prime_UTR 45.0%
ACCATTCCATGTTAACGCCA+TGG - tig0023079:54863-54882 Msa1404700:intron 45.0%
CTGCAGCAGAAGAATCATGC+AGG - tig0023079:51621-51640 None:intergenic 50.0%
! GGAGGGGAGGTAATGGTTAA+AGG - tig0023079:51824-51843 None:intergenic 50.0%
TAGGTTTCAGGGACTCACCA+CGG + tig0023079:52102-52121 Msa1404690:five_prime_UTR 50.0%
CTTGAGATGTGCCTTAACCG+TGG - tig0023079:52122-52141 None:intergenic 50.0%
TCCTGGGTACCTTCCTTAGA+AGG + tig0023079:52909-52928 Msa1404690:CDS 50.0%
!! ACCTTCTAAGGAAGGTACCC+AGG - tig0023079:52913-52932 None:intergenic 50.0%
!!! TGGTGACTTGGCTGGTTTTG+TGG - tig0023079:53039-53058 None:intergenic 50.0%
ACAAAACCAGCCAAGTCACC+AGG + tig0023079:53038-53057 Msa1404690:CDS 50.0%
AAGGCCAGAAGCAGAGTTCA+AGG + tig0023079:53520-53539 Msa1404690:CDS 50.0%
ACCTCCTTGAACTCTGCTTC+TGG - tig0023079:53527-53546 Msa1404700:intron 50.0%
CGTTAATTGCATCTGGGGGA+TGG - tig0023079:53718-53737 Msa1404700:intron 50.0%
!! ATAGTAGCTTGCTCAGCAGG+AGG + tig0023079:53972-53991 Msa1404690:CDS 50.0%
! AGGGAGATGAAAGCATGCTC+AGG - tig0023079:54074-54093 Msa1404700:intron 50.0%
TGAGCATGCTTTCATCTCCC+TGG + tig0023079:54073-54092 Msa1404690:intron 50.0%
!! CTCAAAAGGTGGGTTGGGAT+CGG - tig0023079:54226-54245 Msa1404700:intron 50.0%
ATTCACTCCTCTGCTACAGC+TGG - tig0023079:54675-54694 Msa1404700:intron 50.0%
TTGCCTCCATGGCGTTAACA+TGG + tig0023079:54854-54873 Msa1404690:three_prime_UTR 50.0%
TCAGGGACTCACCACGGTTA+AGG + tig0023079:52108-52127 Msa1404690:five_prime_UTR 55.0%
! CAGATACCTGGTGACTTGGC+TGG - tig0023079:53047-53066 None:intergenic 55.0%
ATGCGGCGCACAGATGATAG+AGG - tig0023079:53214-53233 Msa1404700:three_prime_UTR 55.0%
! TGAAGGCGCAGAGCTTCCTT+TGG - tig0023079:53470-53489 Msa1404700:intron 55.0%
GCCAGAAGCAGAGTTCAAGG+AGG + tig0023079:53523-53542 Msa1404690:CDS 55.0%
!!! CTGGTTTTGTGGCTGCGCTC+TGG - tig0023079:53028-53047 None:intergenic 60.0%
AGCACGTCTGGCAATGTCCC+AGG - tig0023079:53774-53793 Msa1404700:intron 60.0%
ACTCCTCTGCTACAGCTGGC+AGG - tig0023079:54671-54690 Msa1404700:intron 60.0%
GGACCTGCCAGCTGTAGCAG+AGG + tig0023079:54665-54684 Msa1404690:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0023079 gene 51273 54966 51273 ID=Msa1404690;Name=Msa1404690
tig0023079 mRNA 51273 54966 51273 ID=Msa1404690-mRNA-1;Parent=Msa1404690;Name=Msa1404690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1355|1|1|1|0.83|0.71|7|274|232
tig0023079 exon 51273 51410 51273 ID=Msa1404690-mRNA-1:exon:23724;Parent=Msa1404690-mRNA-1
tig0023079 exon 51641 53059 51641 ID=Msa1404690-mRNA-1:exon:23725;Parent=Msa1404690-mRNA-1
tig0023079 exon 53153 53199 53153 ID=Msa1404690-mRNA-1:exon:23726;Parent=Msa1404690-mRNA-1
tig0023079 exon 53452 53544 53452 ID=Msa1404690-mRNA-1:exon:23727;Parent=Msa1404690-mRNA-1
tig0023079 exon 53713 53851 53713 ID=Msa1404690-mRNA-1:exon:23728;Parent=Msa1404690-mRNA-1
tig0023079 exon 53937 54039 53937 ID=Msa1404690-mRNA-1:exon:23729;Parent=Msa1404690-mRNA-1
tig0023079 exon 54578 54966 54578 ID=Msa1404690-mRNA-1:exon:23730;Parent=Msa1404690-mRNA-1
tig0023079 five_prime_UTR 51273 51410 51273 ID=Msa1404690-mRNA-1:five_prime_utr;Parent=Msa1404690-mRNA-1
tig0023079 five_prime_UTR 51641 52857 51641 ID=Msa1404690-mRNA-1:five_prime_utr;Parent=Msa1404690-mRNA-1
tig0023079 CDS 52858 53059 52858 ID=Msa1404690-mRNA-1:cds;Parent=Msa1404690-mRNA-1
tig0023079 CDS 53153 53199 53153 ID=Msa1404690-mRNA-1:cds;Parent=Msa1404690-mRNA-1
tig0023079 CDS 53452 53544 53452 ID=Msa1404690-mRNA-1:cds;Parent=Msa1404690-mRNA-1
tig0023079 CDS 53713 53851 53713 ID=Msa1404690-mRNA-1:cds;Parent=Msa1404690-mRNA-1
tig0023079 CDS 53937 54039 53937 ID=Msa1404690-mRNA-1:cds;Parent=Msa1404690-mRNA-1
tig0023079 CDS 54578 54692 54578 ID=Msa1404690-mRNA-1:cds;Parent=Msa1404690-mRNA-1
tig0023079 three_prime_UTR 54693 54966 54693 ID=Msa1404690-mRNA-1:three_prime_utr;Parent=Msa1404690-mRNA-1
Gene Sequence

>Msa1404690

ATGGCTTTTACATCAACTGCTCTACAATATTCATCCACATCATATTTACAATCCTGGGTACCTTCCTTAGAAGGTACACGTGATCAAAATTCATGGTGCGTCAGAGTGAGATCATACAAACCCAATTCTCAAAAATCACAACAGAACTTTGCAAGAGGGATTACAATCCAGAGCGCAGCCACAAAACCAGCCAAGTCACCAGCTGAAGAAGAATGGAAAGTTAAGCGAGAATTGCTGCTGCAAAAAAGGGTAAAAAGTGTGGAGCCAAAGGAAGCTCTGCGCCTTCAGAAAGAAAATAATTTTGTGATTCTTGATGTAAGGCCAGAAGCAGAGTTCAAGGAGGGCCATCCCCCAGATGCAATTAACGTGCAAGTTTACAGGCTTATAAAAGAATGGACAGCCTGGGACATTGCCAGACGTGCTGCATTTGCATTTTTTGGTATTTTCTCTGGCACAGAAGAAAATCCCGAGTTTATCAAGTCTGTCGATGAAAAATTAGATAAAAATGCAAAGATAATAGTAGCTTGCTCAGCAGGAGGAACAATGAAACCAACACAAAATCTGCCACAAGGTCAACAATCTAGGTCTCTAATAGCAGCTTACTTGCTAGTCCTTAATGGGTACAACAACGTCTTCCATCTAGAAGGTGGGCTTTACAAATGGTTTAAAGAGGACCTGCCAGCTGTAGCAGAGGAGTGA

Protein sequence

>Msa1404690

MAFTSTALQYSSTSYLQSWVPSLEGTRDQNSWCVRVRSYKPNSQKSQQNFARGITIQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVDEKLDKNAKIIVACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE*