AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515460 MtrunA17_Chr3g0127351 96.983 232 7 0 1 232 1 232 9.70e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515460 AT4G27700.1 78.409 176 38 0 52 227 42 217 6.34e-102 295

Find 109 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATCCCATGCTATT+TGG 0.204077 3_4:-66692669 None:intergenic
CCTTAATGAGAGGAGGAAAT+TGG 0.210533 3_4:-66691317 None:intergenic
CCAATTTCCTCCTCTCATTA+AGG 0.215936 3_4:+66691317 Msa0515460:five_prime_UTR
GCTTACTTGCTAGTCCTTAA+TGG 0.218285 3_4:+66694645 Msa0515460:CDS
TTTAATCATTATTATGTCTT+TGG 0.237767 3_4:-66692576 None:intergenic
ATTTAGGTGAATTAGGTTTC+AGG 0.245763 3_4:+66692107 Msa0515460:five_prime_UTR
CAATTAACGTGCAAGTTTAC+AGG 0.264259 3_4:+66693783 Msa0515460:CDS
TTGATCACGTGTACCTTCTA+AGG 0.292255 3_4:-66692938 None:intergenic
TCAGCGACTTCTCACTTTAG+AGG 0.294655 3_4:-66691919 None:intergenic
ATTGAATCAGTGTGCTTTAG+TGG 0.314181 3_4:-66694989 Msa0515470:intron
AGACGTTGTTGTACCCATTA+AGG 0.314913 3_4:-66694659 Msa0515470:intron
GTGTATCAGCATCCTCATTA+TGG 0.316111 3_4:-66694795 Msa0515470:intron
GGAGGGGAGGTAATGGTTAA+AGG 0.323644 3_4:-66691811 None:intergenic
GATGCACATGAACCATGTTT+TGG 0.337165 3_4:+66694964 Msa0515460:three_prime_UTR
ACCTCCTTGAACTCTGCTTC+TGG 0.359245 3_4:-66693576 Msa0515470:intron
CCATATCTTCTGAATAGATA+TGG 0.364152 3_4:+66691873 Msa0515460:five_prime_UTR
ACTTGCACGTTAATTGCATC+TGG 0.366259 3_4:-66693776 Msa0515470:intron
CTTACTTGCTAGTCCTTAAT+GGG 0.367095 3_4:+66694646 Msa0515460:CDS
CCATATCTATTCAGAAGATA+TGG 0.367191 3_4:-66691873 None:intergenic
TTCAAATAAGATGATGGTAT+TGG 0.384462 3_4:-66692290 None:intergenic
CCACATCATATTTACAATCC+TGG 0.388007 3_4:+66692908 Msa0515460:CDS
AAATGCAAATGCAGCACGTC+TGG 0.405189 3_4:-66693837 Msa0515470:intron
TGTAAAGCCCACCTTCTAGA+TGG 0.405275 3_4:-66694683 Msa0515470:intron
TGAAGGCGCAGAGCTTCCTT+TGG 0.408083 3_4:-66693519 Msa0515470:intron
ATAATAGTAGCTTGCTCAGC+AGG 0.410454 3_4:+66694023 Msa0515460:CDS
TGCCACAAAATCTGAATTTG+TGG 0.412157 3_4:-66692699 None:intergenic
AGTGTAAGTAGTTAATTCAA+TGG 0.415530 3_4:-66692812 None:intergenic
TCCTGGGTACCTTCCTTAGA+AGG 0.423883 3_4:+66692925 Msa0515460:CDS
CTTAATGAGAGGAGGAAATT+GGG 0.429363 3_4:-66691316 None:intergenic
TCAGGGACTCACCACGGTTA+AGG 0.430614 3_4:+66692125 Msa0515460:five_prime_UTR
TTTACAGGCTTATAAAAGAA+TGG 0.431650 3_4:+66693798 Msa0515460:CDS
TTTAGGTGAATTAGGTTTCA+GGG 0.440880 3_4:+66692108 Msa0515460:five_prime_UTR
GCACGGATAATTCTATTGAA+TGG 0.443072 3_4:+66691848 Msa0515460:five_prime_UTR
TGCCACAAGGTCAACAATCT+AGG 0.445952 3_4:+66694072 Msa0515460:CDS
AAGAAAGTCAATCAAATTCA+AGG 0.458401 3_4:+66691772 Msa0515460:five_prime_UTR
AACGTGAAAGAGTTGTTTAG+AGG 0.460726 3_4:-66692070 None:intergenic
GTTAATTCAATGGAAGTACT+TGG 0.463482 3_4:-66692802 None:intergenic
AAGGCCAGAAGCAGAGTTCA+AGG 0.467849 3_4:+66693572 Msa0515460:CDS
GATGAATCGCATCTGACAAA+TGG 0.470690 3_4:-66691642 None:intergenic
TAGAAGGTGGGCTTTACAAA+TGG 0.471246 3_4:+66694688 Msa0515460:CDS
TTGAAATGTAAACGTTGAAC+TGG 0.478265 3_4:+66694837 Msa0515460:three_prime_UTR
CAGATACCTGGTGACTTGGC+TGG 0.485918 3_4:-66693060 None:intergenic
ATTGAGTTCAAATCCCTTCG+AGG 0.492675 3_4:+66692213 Msa0515460:five_prime_UTR
AGGTAATAGCTGAAGAAGAA+TGG 0.495632 3_4:+66693160 Msa0515460:intron
ACGATTGTTATTAAGAAAAG+TGG 0.497171 3_4:-66691278 None:intergenic
AAGTACTAGTGTCAAGGCAG+AGG 0.501859 3_4:+66692530 Msa0515460:five_prime_UTR
CACATCATATTTACAATCCT+GGG 0.506172 3_4:+66692909 Msa0515460:CDS
CTTGCACGTTAATTGCATCT+GGG 0.507566 3_4:-66693775 Msa0515470:intron
GTACACGTGATCAAAATTCA+TGG 0.508681 3_4:+66692947 Msa0515460:CDS
CATCTTACACTTGATAAACT+CGG 0.509099 3_4:-66693891 Msa0515470:intron
CAATAACTTGAGTTAATACA+TGG 0.509127 3_4:-66692194 None:intergenic
GACTATTACTTGAATTAACC+AGG 0.510124 3_4:+66692249 Msa0515460:five_prime_UTR
TTGTCTAAAGATTGCCTCCA+TGG 0.511374 3_4:+66694897 Msa0515460:three_prime_UTR
ATCTTACACTTGATAAACTC+GGG 0.514723 3_4:-66693890 Msa0515470:intron
ACTCCTCTGCTACAGCTGGC+AGG 0.515472 3_4:-66694722 Msa0515470:intron
AGAACAGAAACTTGTTCAGC+TGG 0.515487 3_4:+66691729 Msa0515460:five_prime_UTR
AGCACGTCTGGCAATGTCCC+AGG 0.517639 3_4:-66693825 Msa0515470:intron
TCCATGGCGTTAACATGGAA+TGG 0.522426 3_4:+66694913 Msa0515460:three_prime_UTR
TTATGGTCAAAACTAGGTCC+AGG 0.530808 3_4:-66694778 Msa0515470:intron
TTTCTCAGCATGCACAATGT+TGG 0.532211 3_4:-66694755 Msa0515470:intron
GCTTTAGTGGTTCCAAAACA+TGG 0.534300 3_4:-66694976 Msa0515470:intron
TATATTTAAAACATAAACAT+AGG 0.535516 3_4:+66692498 Msa0515460:five_prime_UTR
CTGTTGTCAAGTGAGTTGTT+TGG 0.539637 3_4:-66692763 None:intergenic
GCTTTACAAATGGTTTAAAG+AGG 0.544902 3_4:+66694698 Msa0515460:CDS
CTGATACACAAAGGACAGAA+TGG 0.545138 3_4:+66694809 Msa0515460:three_prime_UTR
AACAACGTCTTCCATCTAGA+AGG 0.547666 3_4:+66694672 Msa0515460:CDS
ATGAGGATATCCAAATAGCA+TGG 0.549414 3_4:+66692659 Msa0515460:five_prime_UTR
TTATAAAAGAATGGACAGCC+TGG 0.552760 3_4:+66693807 Msa0515460:CDS
ATTCACTCCTCTGCTACAGC+TGG 0.554886 3_4:-66694726 Msa0515470:intron
TTGCCTCCATGGCGTTAACA+TGG 0.557472 3_4:+66694908 Msa0515460:three_prime_UTR
TCCTCATTATGGTCAAAACT+AGG 0.558607 3_4:-66694784 Msa0515470:intron
AGAACAGATACCTGGTGACT+TGG 0.561851 3_4:-66693064 None:intergenic
ATGAGAGGAGGAAATTGGGA+AGG 0.563624 3_4:-66691312 None:intergenic
TGAGACTGAGCTTCAAAGCA+TGG 0.566115 3_4:+66692855 Msa0515460:exon
TTAATTCAATGGAAGTACTT+GGG 0.569087 3_4:-66692801 None:intergenic
AGCGTTTCCTTAATGAGAGG+AGG 0.569738 3_4:-66691324 None:intergenic
GAAATTGGGAAGGAAGAGCT+TGG 0.576402 3_4:-66691302 None:intergenic
TTGCACGTTAATTGCATCTG+GGG 0.578396 3_4:-66693774 Msa0515470:intron
GGACCTGCCAGCTGTAGCAG+AGG 0.578953 3_4:+66694719 Msa0515460:CDS
ATTGTGCATGCTGAGAAACC+TGG 0.579123 3_4:+66694760 Msa0515460:three_prime_UTR
ACCATTCCATGTTAACGCCA+TGG 0.579175 3_4:-66694914 Msa0515470:intron
CTCGTTGAATACTAGTCCAA+TGG 0.583941 3_4:+66692160 Msa0515460:five_prime_UTR
AATAGAAAGTACTAGTGTCA+AGG 0.584964 3_4:+66692524 Msa0515460:five_prime_UTR
ACAAAACCAGCCAAGTCACC+AGG 0.585038 3_4:+66693054 Msa0515460:CDS
AACGTCTTCCATCTAGAAGG+TGG 0.586598 3_4:+66694675 Msa0515460:CDS
TACCTAGATTGTTGACCTTG+TGG 0.587500 3_4:-66694074 Msa0515470:intron
AAAACATGGTTCATGTGCAT+CGG 0.587851 3_4:-66694962 Msa0515470:intron
AAATGTGCTTCTGCGTATTG+TGG 0.594545 3_4:-66692729 None:intergenic
CACAACAGAACTTTGCAAGA+GGG 0.596863 3_4:+66693010 Msa0515460:CDS
TTGAGCGTTTCCTTAATGAG+AGG 0.599603 3_4:-66691327 None:intergenic
TATCGTATCAAAGTAAGCAA+AGG 0.603334 3_4:+66692601 Msa0515460:five_prime_UTR
TCACAACAGAACTTTGCAAG+AGG 0.603824 3_4:+66693009 Msa0515460:CDS
TGAGGATATCCAAATAGCAT+GGG 0.605804 3_4:+66692660 Msa0515460:five_prime_UTR
AGTACTAGTGTCAAGGCAGA+GGG 0.610650 3_4:+66692531 Msa0515460:five_prime_UTR
CTTCTGAATAGATATGGCAA+TGG 0.613624 3_4:+66691879 Msa0515460:five_prime_UTR
TATAAAAGAATGGACAGCCT+GGG 0.617323 3_4:+66693808 Msa0515460:CDS
ACCTTCTAAGGAAGGTACCC+AGG 0.624704 3_4:-66692926 None:intergenic
ACGTCTTCCATCTAGAAGGT+GGG 0.626570 3_4:+66694676 Msa0515460:CDS
CCAGGATTGTAAATATGATG+TGG 0.629329 3_4:-66692908 None:intergenic
TGCACGTTAATTGCATCTGG+GGG 0.637849 3_4:-66693773 Msa0515470:intron
ATAGTAGCTTGCTCAGCAGG+AGG 0.650338 3_4:+66694026 Msa0515460:CDS
TAGGTTTCAGGGACTCACCA+CGG 0.660400 3_4:+66692119 Msa0515460:five_prime_UTR
TCACGTGTACCTTCTAAGGA+AGG 0.660526 3_4:-66692934 None:intergenic
CCAACACAAAATCTGCCACA+AGG 0.681974 3_4:+66694059 Msa0515460:CDS
ATGAGGATGCTGATACACAA+AGG 0.685477 3_4:+66694800 Msa0515460:three_prime_UTR
ATTCCATGTTAACGCCATGG+AGG 0.719899 3_4:-66694911 Msa0515470:intron
CTTGAGATGTGCCTTAACCG+TGG 0.723324 3_4:-66692136 None:intergenic
GCCAGAAGCAGAGTTCAAGG+AGG 0.748938 3_4:+66693575 Msa0515460:CDS
TACTTGGGATCAGACTACTG+CGG 0.756375 3_4:-66692786 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGATATGAAAAAATTT+AGG + chr3_4:66692091-66692110 Msa0515460:five_prime_UTR 10.0%
!!! TATATTTAAAACATAAACAT+AGG + chr3_4:66692498-66692517 Msa0515460:five_prime_UTR 10.0%
!!! AGTTAATTAGATTTTAAACA+AGG + chr3_4:66691995-66692014 Msa0515460:five_prime_UTR 15.0%
!! TTTAATCATTATTATGTCTT+TGG - chr3_4:66692579-66692598 None:intergenic 15.0%
!! GTTTAATTGATTGTAATATA+GGG + chr3_4:66693693-66693712 Msa0515460:intron 15.0%
!!! ATGTATGTTTTTTTAGCATA+TGG + chr3_4:66691415-66691434 Msa0515460:intron 20.0%
!!! ATTAACTTACTGTTTCTATT+AGG + chr3_4:66691571-66691590 Msa0515460:intron 20.0%
!! TGAAAAAATTTAGGTGAATT+AGG + chr3_4:66692100-66692119 Msa0515460:five_prime_UTR 20.0%
!!! TATCAAACTTTTTAAAAACC+TGG - chr3_4:66692270-66692289 None:intergenic 20.0%
!!! TTTTACTTCAAATAAGATGA+TGG - chr3_4:66692299-66692318 None:intergenic 20.0%
!!! TACTGCTTTATTTTTTTGTA+GGG - chr3_4:66692434-66692453 None:intergenic 20.0%
!!! TTACTGCTTTATTTTTTTGT+AGG - chr3_4:66692435-66692454 None:intergenic 20.0%
!! AGGAAAAAGAAAAGAAAAAA+AGG + chr3_4:66692621-66692640 Msa0515460:five_prime_UTR 20.0%
!! AACTAAAAGATTGAAATGTT+TGG + chr3_4:66693363-66693382 Msa0515460:intron 20.0%
!! TATCTTTGATCTAATATTGT+AGG + chr3_4:66693482-66693501 Msa0515460:intron 20.0%
!!! CAAAATTATTTTCTTTCTGA+AGG - chr3_4:66693539-66693558 Msa0515470:intron 20.0%
!! GGTTTAATTGATTGTAATAT+AGG + chr3_4:66693692-66693711 Msa0515460:intron 20.0%
!! AACTAAATATTTGATTCATG+CGG + chr3_4:66693964-66693983 Msa0515460:intron 20.0%
!!! CAAAGACATTTAAATTTTAG+AGG + chr3_4:66694331-66694350 Msa0515460:intron 20.0%
!! TTATATCACATGTAACAAAT+TGG - chr3_4:66694396-66694415 Msa0515470:intron 20.0%
!!! AAGACAAATTAGTTCTTTAT+CGG + chr3_4:66694435-66694454 Msa0515460:intron 20.0%
!! ATAATATTCAAATCATCGAT+TGG + chr3_4:66694575-66694594 Msa0515460:intron 20.0%
!! ACGATTGTTATTAAGAAAAG+TGG - chr3_4:66691281-66691300 None:intergenic 25.0%
!! TGTTTTATGCTTGAAAACAA+TGG - chr3_4:66691380-66691399 None:intergenic 25.0%
!!! ATTGTTTTCAAGCATAAAAC+AGG + chr3_4:66691379-66691398 Msa0515460:five_prime_UTR 25.0%
!!! TATTTTGCATAATTCGAGTT+AGG + chr3_4:66691454-66691473 Msa0515460:intron 25.0%
!!! GAGTTAGGCTTATTATTTTT+TGG + chr3_4:66691469-66691488 Msa0515460:intron 25.0%
!!! TTACTGTTTCTATTAGGTAT+GGG + chr3_4:66691577-66691596 Msa0515460:intron 25.0%
! AAGAAAGTCAATCAAATTCA+AGG + chr3_4:66691772-66691791 Msa0515460:five_prime_UTR 25.0%
!!! TGCTTGAAAATTTTAAAGGA+GGG - chr3_4:66691831-66691850 None:intergenic 25.0%
!!! TCCTTTAAAATTTTCAAGCA+CGG + chr3_4:66691831-66691850 Msa0515460:five_prime_UTR 25.0%
! CAATAACTTGAGTTAATACA+TGG - chr3_4:66692197-66692216 None:intergenic 25.0%
!! TTCAAATAAGATGATGGTAT+TGG - chr3_4:66692293-66692312 None:intergenic 25.0%
!!! TTAATTCAATGGAAGTACTT+GGG - chr3_4:66692804-66692823 None:intergenic 25.0%
! AGTGTAAGTAGTTAATTCAA+TGG - chr3_4:66692815-66692834 None:intergenic 25.0%
!!! TGTTGTGATTTTTGAGAATT+GGG - chr3_4:66692997-66693016 None:intergenic 25.0%
! AAACTTAACTTCACTTTCTT+TGG + chr3_4:66693137-66693156 Msa0515460:intron 25.0%
! AATATAAATGCTAAAGATGC+AGG - chr3_4:66693309-66693328 Msa0515470:intron 25.0%
! AATATTGTAGGTAAAAAGTG+TGG + chr3_4:66693494-66693513 Msa0515460:intron 25.0%
!! ATTTTGTGATTCTTGATGTA+AGG + chr3_4:66693553-66693572 Msa0515460:CDS 25.0%
! AAAATGTAACATGAATGTAC+AGG - chr3_4:66693645-66693664 Msa0515470:intron 25.0%
! AGAAGGAAAAAAAAAACTGA+TGG + chr3_4:66693723-66693742 Msa0515460:intron 25.0%
! TTTACAGGCTTATAAAAGAA+TGG + chr3_4:66693798-66693817 Msa0515460:CDS 25.0%
!!! ACATTTAAATTTTAGAGGAC+AGG + chr3_4:66694336-66694355 Msa0515460:intron 25.0%
! TTTCATAATTGCATGAAAAG+TGG - chr3_4:66694554-66694573 Msa0515470:intron 25.0%
!! CTTACTGTTTCTATTAGGTA+TGG + chr3_4:66691576-66691595 Msa0515460:intron 30.0%
!! GCTTGAAAATTTTAAAGGAG+GGG - chr3_4:66691830-66691849 None:intergenic 30.0%
!! GTGCTTGAAAATTTTAAAGG+AGG - chr3_4:66691832-66691851 None:intergenic 30.0%
! TCCGTGCTTGAAAATTTTAA+AGG - chr3_4:66691835-66691854 None:intergenic 30.0%
CCATATCTATTCAGAAGATA+TGG - chr3_4:66691876-66691895 None:intergenic 30.0%
CCATATCTTCTGAATAGATA+TGG + chr3_4:66691873-66691892 Msa0515460:five_prime_UTR 30.0%
ATTTAGGTGAATTAGGTTTC+AGG + chr3_4:66692107-66692126 Msa0515460:five_prime_UTR 30.0%
TTTAGGTGAATTAGGTTTCA+GGG + chr3_4:66692108-66692127 Msa0515460:five_prime_UTR 30.0%
GACTATTACTTGAATTAACC+AGG + chr3_4:66692249-66692268 Msa0515460:five_prime_UTR 30.0%
!! AATAGAAAGTACTAGTGTCA+AGG + chr3_4:66692524-66692543 Msa0515460:five_prime_UTR 30.0%
TATCGTATCAAAGTAAGCAA+AGG + chr3_4:66692601-66692620 Msa0515460:five_prime_UTR 30.0%
! GGACAAAAATGATGATAATG+AGG + chr3_4:66692642-66692661 Msa0515460:five_prime_UTR 30.0%
!! GTTAATTCAATGGAAGTACT+TGG - chr3_4:66692805-66692824 None:intergenic 30.0%
CACATCATATTTACAATCCT+GGG + chr3_4:66692909-66692928 Msa0515460:CDS 30.0%
!! CTGTTGTGATTTTTGAGAAT+TGG - chr3_4:66692998-66693017 None:intergenic 30.0%
!! AAATCTTTAAAGTGCTGTGA+CGG - chr3_4:66693112-66693131 None:intergenic 30.0%
! CTATTTGCTAATAAACAGCA+AGG + chr3_4:66693402-66693421 Msa0515460:intron 30.0%
TAATATAGGGTGTACTAAGA+AGG + chr3_4:66693706-66693725 Msa0515460:intron 30.0%
ATTTGTCTATGATGAATGCA+GGG + chr3_4:66693746-66693765 Msa0515460:intron 30.0%
!!! GCATTTTTTGGTATTTTCTC+TGG + chr3_4:66693854-66693873 Msa0515460:CDS 30.0%
ATCTTACACTTGATAAACTC+GGG - chr3_4:66693893-66693912 Msa0515470:intron 30.0%
CATCTTACACTTGATAAACT+CGG - chr3_4:66693894-66693913 Msa0515470:intron 30.0%
TGAGCAATATTGAAAAACCA+GGG - chr3_4:66694147-66694166 Msa0515470:intron 30.0%
ATGAGCAATATTGAAAAACC+AGG - chr3_4:66694148-66694167 Msa0515470:intron 30.0%
AAGAATATACAGACCAAAAC+TGG + chr3_4:66694214-66694233 Msa0515460:intron 30.0%
AATGTCTTTGAATCTGATGT+TGG - chr3_4:66694321-66694340 Msa0515470:intron 30.0%
! TGTCTTTTTATTACTCTCTC+TGG - chr3_4:66694421-66694440 Msa0515470:intron 30.0%
! TTATCGGCTAAAATACACAA+TGG + chr3_4:66694451-66694470 Msa0515460:intron 30.0%
CATGCAATCCAAGTTATTAA+TGG - chr3_4:66694483-66694502 Msa0515470:intron 30.0%
CATTAATAACTTGGATTGCA+TGG + chr3_4:66694481-66694500 Msa0515460:intron 30.0%
GCTTTACAAATGGTTTAAAG+AGG + chr3_4:66694698-66694717 Msa0515460:CDS 30.0%
TTGAAATGTAAACGTTGAAC+TGG + chr3_4:66694837-66694856 Msa0515460:three_prime_UTR 30.0%
CTTAATGAGAGGAGGAAATT+GGG - chr3_4:66691319-66691338 None:intergenic 35.0%
!! TGAAAATTTTAAAGGAGGGG+AGG - chr3_4:66691827-66691846 None:intergenic 35.0%
GCACGGATAATTCTATTGAA+TGG + chr3_4:66691848-66691867 Msa0515460:five_prime_UTR 35.0%
CTTCTGAATAGATATGGCAA+TGG + chr3_4:66691879-66691898 Msa0515460:five_prime_UTR 35.0%
AACGTGAAAGAGTTGTTTAG+AGG - chr3_4:66692073-66692092 None:intergenic 35.0%
! CATGGCAAAACTTTTACCAT+TGG - chr3_4:66692179-66692198 None:intergenic 35.0%
ATGAGGATATCCAAATAGCA+TGG + chr3_4:66692659-66692678 Msa0515460:five_prime_UTR 35.0%
TGAGGATATCCAAATAGCAT+GGG + chr3_4:66692660-66692679 Msa0515460:five_prime_UTR 35.0%
TTTAGGAATCCCATGCTATT+TGG - chr3_4:66692672-66692691 None:intergenic 35.0%
! GAATTTGTGGTCGATGTTTT+AGG - chr3_4:66692689-66692708 None:intergenic 35.0%
! GACCACAAATTCAGATTTTG+TGG + chr3_4:66692697-66692716 Msa0515460:five_prime_UTR 35.0%
TGCCACAAAATCTGAATTTG+TGG - chr3_4:66692702-66692721 None:intergenic 35.0%
CCAGGATTGTAAATATGATG+TGG - chr3_4:66692911-66692930 None:intergenic 35.0%
CCACATCATATTTACAATCC+TGG + chr3_4:66692908-66692927 Msa0515460:CDS 35.0%
GTACACGTGATCAAAATTCA+TGG + chr3_4:66692947-66692966 Msa0515460:CDS 35.0%
CTTAACTTCACTTTCTTTGG+AGG + chr3_4:66693140-66693159 Msa0515460:intron 35.0%
AGGTAATAGCTGAAGAAGAA+TGG + chr3_4:66693160-66693179 Msa0515460:intron 35.0%
AGAATTGCTGCTGCAAAAAA+GGG + chr3_4:66693194-66693213 Msa0515460:CDS 35.0%
! GTGTTCTTATTTGTGCATTC+AGG - chr3_4:66693262-66693281 Msa0515470:three_prime_UTR 35.0%
! TTCTTATTTGTGCAAGATGC+AGG - chr3_4:66693284-66693303 Msa0515470:intron 35.0%
TGCTAATAAACAGCAAGGAT+AGG + chr3_4:66693407-66693426 Msa0515460:intron 35.0%
ATAGGACAGAGTACAATCTA+AGG + chr3_4:66693425-66693444 Msa0515460:intron 35.0%
ACATGAATGTACAGGTACAT+TGG - chr3_4:66693637-66693656 Msa0515470:intron 35.0%
GATTTGTCTATGATGAATGC+AGG + chr3_4:66693745-66693764 Msa0515460:intron 35.0%
CAATTAACGTGCAAGTTTAC+AGG + chr3_4:66693783-66693802 Msa0515460:CDS 35.0%
TTATAAAAGAATGGACAGCC+TGG + chr3_4:66693807-66693826 Msa0515460:CDS 35.0%
TATAAAAGAATGGACAGCCT+GGG + chr3_4:66693808-66693827 Msa0515460:CDS 35.0%
AATTCAAGAAATGCACGTTG+AGG - chr3_4:66693923-66693942 Msa0515470:intron 35.0%
! TCTAATTTTTCATCGACAGC+TGG - chr3_4:66693990-66694009 Msa0515470:intron 35.0%
ATATACAGACCAAAACTGGT+TGG + chr3_4:66694218-66694237 Msa0515460:intron 35.0%
! AAATTGTTGCCAACCAGTTT+TGG - chr3_4:66694230-66694249 Msa0515470:intron 35.0%
AAAGTGCAAACACACTCAAA+AGG - chr3_4:66694294-66694313 Msa0515470:intron 35.0%
ATCACATGTAACAAATTGGC+AGG - chr3_4:66694392-66694411 Msa0515470:intron 35.0%
!! GGAAAGTGCCATTAATAACT+TGG + chr3_4:66694472-66694491 Msa0515460:intron 35.0%
TCACATTTGTGTACTTTCGT+AGG + chr3_4:66694610-66694629 Msa0515460:intron 35.0%
! CTTACTTGCTAGTCCTTAAT+GGG + chr3_4:66694646-66694665 Msa0515460:CDS 35.0%
!!! ACCTAGTTTTGACCATAATG+AGG + chr3_4:66694783-66694802 Msa0515460:three_prime_UTR 35.0%
TCCTCATTATGGTCAAAACT+AGG - chr3_4:66694787-66694806 Msa0515470:intron 35.0%
AAAACATGGTTCATGTGCAT+CGG - chr3_4:66694965-66694984 Msa0515470:intron 35.0%
ATTGAATCAGTGTGCTTTAG+TGG - chr3_4:66694992-66695011 Msa0515470:intron 35.0%
CCTTAATGAGAGGAGGAAAT+TGG - chr3_4:66691320-66691339 None:intergenic 40.0%
CCAATTTCCTCCTCTCATTA+AGG + chr3_4:66691317-66691336 Msa0515460:five_prime_UTR 40.0%
TTGAGCGTTTCCTTAATGAG+AGG - chr3_4:66691330-66691349 None:intergenic 40.0%
AGATGCTCAGAATATCCCAA+TGG + chr3_4:66691524-66691543 Msa0515460:intron 40.0%
GATGCTCAGAATATCCCAAT+GGG + chr3_4:66691525-66691544 Msa0515460:intron 40.0%
GATGAATCGCATCTGACAAA+TGG - chr3_4:66691645-66691664 None:intergenic 40.0%
! AGAACAGAAACTTGTTCAGC+TGG + chr3_4:66691729-66691748 Msa0515460:five_prime_UTR 40.0%
!! TTTTAAAGGAGGGGAGGTAA+TGG - chr3_4:66691821-66691840 None:intergenic 40.0%
CTCGTTGAATACTAGTCCAA+TGG + chr3_4:66692160-66692179 Msa0515460:five_prime_UTR 40.0%
ATTGAGTTCAAATCCCTTCG+AGG + chr3_4:66692213-66692232 Msa0515460:five_prime_UTR 40.0%
! ATTTTACAGCTGTCCTCGAA+GGG - chr3_4:66692229-66692248 None:intergenic 40.0%
AAATGTGCTTCTGCGTATTG+TGG - chr3_4:66692732-66692751 None:intergenic 40.0%
CTGTTGTCAAGTGAGTTGTT+TGG - chr3_4:66692766-66692785 None:intergenic 40.0%
TTGATCACGTGTACCTTCTA+AGG - chr3_4:66692941-66692960 None:intergenic 40.0%
TCACAACAGAACTTTGCAAG+AGG + chr3_4:66693009-66693028 Msa0515460:CDS 40.0%
CACAACAGAACTTTGCAAGA+GGG + chr3_4:66693010-66693029 Msa0515460:CDS 40.0%
AGTAACTCAGAACAGATACC+TGG - chr3_4:66693075-66693094 None:intergenic 40.0%
GAGAATTGCTGCTGCAAAAA+AGG + chr3_4:66693193-66693212 Msa0515460:CDS 40.0%
TACATTGGAGCTGGAAAACA+AGG - chr3_4:66693622-66693641 Msa0515470:intron 40.0%
! CATTTTCTGTGTCTCTCTTG+TGG + chr3_4:66693659-66693678 Msa0515460:intron 40.0%
TTGCACGTTAATTGCATCTG+GGG - chr3_4:66693777-66693796 Msa0515470:intron 40.0%
CTTGCACGTTAATTGCATCT+GGG - chr3_4:66693778-66693797 Msa0515470:intron 40.0%
ACTTGCACGTTAATTGCATC+TGG - chr3_4:66693779-66693798 Msa0515470:intron 40.0%
!!! CGTGCTGCATTTGCATTTTT+TGG + chr3_4:66693842-66693861 Msa0515460:CDS 40.0%
!! ATAATAGTAGCTTGCTCAGC+AGG + chr3_4:66694023-66694042 Msa0515460:CDS 40.0%
TACCTAGATTGTTGACCTTG+TGG - chr3_4:66694077-66694096 Msa0515470:intron 40.0%
! ATGAAAGCATGCTCAGGAAA+GGG - chr3_4:66694122-66694141 Msa0515470:intron 40.0%
!! GGATCGGTTTGCGTAAATAA+TGG - chr3_4:66694264-66694283 Msa0515470:intron 40.0%
TGCAAACACACTCAAAAGGT+GGG - chr3_4:66694290-66694309 Msa0515470:intron 40.0%
CATGTAACAAATTGGCAGGA+TGG - chr3_4:66694388-66694407 Msa0515470:intron 40.0%
TGATATAGCTGAAAGCTGCA+TGG + chr3_4:66694522-66694541 Msa0515460:intron 40.0%
! GCTTACTTGCTAGTCCTTAA+TGG + chr3_4:66694645-66694664 Msa0515460:CDS 40.0%
AGACGTTGTTGTACCCATTA+AGG - chr3_4:66694662-66694681 Msa0515470:intron 40.0%
AACAACGTCTTCCATCTAGA+AGG + chr3_4:66694672-66694691 Msa0515460:CDS 40.0%
! TAGAAGGTGGGCTTTACAAA+TGG + chr3_4:66694688-66694707 Msa0515460:CDS 40.0%
TTTCTCAGCATGCACAATGT+TGG - chr3_4:66694758-66694777 Msa0515470:intron 40.0%
TTATGGTCAAAACTAGGTCC+AGG - chr3_4:66694781-66694800 Msa0515470:intron 40.0%
GTGTATCAGCATCCTCATTA+TGG - chr3_4:66694798-66694817 Msa0515470:intron 40.0%
ATGAGGATGCTGATACACAA+AGG + chr3_4:66694800-66694819 Msa0515460:three_prime_UTR 40.0%
CTGATACACAAAGGACAGAA+TGG + chr3_4:66694809-66694828 Msa0515460:three_prime_UTR 40.0%
TTGTCTAAAGATTGCCTCCA+TGG + chr3_4:66694897-66694916 Msa0515460:three_prime_UTR 40.0%
! GATGCACATGAACCATGTTT+TGG + chr3_4:66694964-66694983 Msa0515460:three_prime_UTR 40.0%
GCTTTAGTGGTTCCAAAACA+TGG - chr3_4:66694979-66694998 Msa0515470:intron 40.0%
GAAATTGGGAAGGAAGAGCT+TGG - chr3_4:66691305-66691324 None:intergenic 45.0%
ATGAGAGGAGGAAATTGGGA+AGG - chr3_4:66691315-66691334 None:intergenic 45.0%
AGCGTTTCCTTAATGAGAGG+AGG - chr3_4:66691327-66691346 None:intergenic 45.0%
!! TATCCCAATGGGCTAAAAGC+AGG + chr3_4:66691536-66691555 Msa0515460:intron 45.0%
!! ATCCCAATGGGCTAAAAGCA+GGG + chr3_4:66691537-66691556 Msa0515460:intron 45.0%
!! ATCCCTGCTTTTAGCCCATT+GGG - chr3_4:66691542-66691561 None:intergenic 45.0%
!! AATCCCTGCTTTTAGCCCAT+TGG - chr3_4:66691543-66691562 None:intergenic 45.0%
TCAGCGACTTCTCACTTTAG+AGG - chr3_4:66691922-66691941 None:intergenic 45.0%
! CATTTTACAGCTGTCCTCGA+AGG - chr3_4:66692230-66692249 None:intergenic 45.0%
AAGTACTAGTGTCAAGGCAG+AGG + chr3_4:66692530-66692549 Msa0515460:five_prime_UTR 45.0%
AGTACTAGTGTCAAGGCAGA+GGG + chr3_4:66692531-66692550 Msa0515460:five_prime_UTR 45.0%
TACTTGGGATCAGACTACTG+CGG - chr3_4:66692789-66692808 None:intergenic 45.0%
TGAGACTGAGCTTCAAAGCA+TGG + chr3_4:66692855-66692874 Msa0515460:exon 45.0%
! TCACGTGTACCTTCTAAGGA+AGG - chr3_4:66692937-66692956 None:intergenic 45.0%
AGAACAGATACCTGGTGACT+TGG - chr3_4:66693067-66693086 None:intergenic 45.0%
! TGTGCATTCAGGAGAGTATG+CGG - chr3_4:66693251-66693270 Msa0515470:three_prime_UTR 45.0%
! GGTAAAAAGTGTGGAGCCAA+AGG + chr3_4:66693503-66693522 Msa0515460:intron 45.0%
ATGTACAGGTACATTGGAGC+TGG - chr3_4:66693631-66693650 Msa0515470:intron 45.0%
TCTCTCTTGTGGCTTCTACT+TGG + chr3_4:66693670-66693689 Msa0515460:intron 45.0%
CTCTCTTGTGGCTTCTACTT+GGG + chr3_4:66693671-66693690 Msa0515460:intron 45.0%
TGCACGTTAATTGCATCTGG+GGG - chr3_4:66693776-66693795 Msa0515470:intron 45.0%
AAATGCAAATGCAGCACGTC+TGG - chr3_4:66693840-66693859 Msa0515470:intron 45.0%
! CCTTGTGGCAGATTTTGTGT+TGG - chr3_4:66694062-66694081 Msa0515470:intron 45.0%
CCAACACAAAATCTGCCACA+AGG + chr3_4:66694059-66694078 Msa0515460:CDS 45.0%
TGCCACAAGGTCAACAATCT+AGG + chr3_4:66694072-66694091 Msa0515460:CDS 45.0%
! GATGAAAGCATGCTCAGGAA+AGG - chr3_4:66694123-66694142 Msa0515470:intron 45.0%
! ACACACTCAAAAGGTGGGTT+GGG - chr3_4:66694285-66694304 Msa0515470:intron 45.0%
AACACACTCAAAAGGTGGGT+TGG - chr3_4:66694286-66694305 Msa0515470:intron 45.0%
GTGCAAACACACTCAAAAGG+TGG - chr3_4:66694291-66694310 Msa0515470:intron 45.0%
AACGTCTTCCATCTAGAAGG+TGG + chr3_4:66694675-66694694 Msa0515460:CDS 45.0%
ACGTCTTCCATCTAGAAGGT+GGG + chr3_4:66694676-66694695 Msa0515460:CDS 45.0%
TGTAAAGCCCACCTTCTAGA+TGG - chr3_4:66694686-66694705 Msa0515470:intron 45.0%
ATTGTGCATGCTGAGAAACC+TGG + chr3_4:66694760-66694779 Msa0515460:three_prime_UTR 45.0%
ATTCCATGTTAACGCCATGG+AGG - chr3_4:66694914-66694933 Msa0515470:intron 45.0%
TCCATGGCGTTAACATGGAA+TGG + chr3_4:66694913-66694932 Msa0515460:three_prime_UTR 45.0%
ACCATTCCATGTTAACGCCA+TGG - chr3_4:66694917-66694936 Msa0515470:intron 45.0%
CTGCAGCAGAAGAATCATGC+AGG - chr3_4:66691611-66691630 None:intergenic 50.0%
! GGAGGGGAGGTAATGGTTAA+AGG - chr3_4:66691814-66691833 None:intergenic 50.0%
TAGGTTTCAGGGACTCACCA+CGG + chr3_4:66692119-66692138 Msa0515460:five_prime_UTR 50.0%
CTTGAGATGTGCCTTAACCG+TGG - chr3_4:66692139-66692158 None:intergenic 50.0%
TCCTGGGTACCTTCCTTAGA+AGG + chr3_4:66692925-66692944 Msa0515460:CDS 50.0%
!! ACCTTCTAAGGAAGGTACCC+AGG - chr3_4:66692929-66692948 None:intergenic 50.0%
!!! TGGTGACTTGGCTGGTTTTG+TGG - chr3_4:66693055-66693074 None:intergenic 50.0%
ACAAAACCAGCCAAGTCACC+AGG + chr3_4:66693054-66693073 Msa0515460:CDS 50.0%
! TGCATTCAGGAGAGTATGCG+GGG - chr3_4:66693249-66693268 Msa0515470:three_prime_UTR 50.0%
! GTGCATTCAGGAGAGTATGC+GGG - chr3_4:66693250-66693269 Msa0515470:three_prime_UTR 50.0%
AAGGCCAGAAGCAGAGTTCA+AGG + chr3_4:66693572-66693591 Msa0515460:CDS 50.0%
ACCTCCTTGAACTCTGCTTC+TGG - chr3_4:66693579-66693598 Msa0515470:intron 50.0%
CGTTAATTGCATCTGGGGGA+TGG - chr3_4:66693772-66693791 Msa0515470:intron 50.0%
!! ATAGTAGCTTGCTCAGCAGG+AGG + chr3_4:66694026-66694045 Msa0515460:CDS 50.0%
! AGGGAGATGAAAGCATGCTC+AGG - chr3_4:66694128-66694147 Msa0515470:intron 50.0%
TGAGCATGCTTTCATCTCCC+TGG + chr3_4:66694127-66694146 Msa0515460:intron 50.0%
!! CTCAAAAGGTGGGTTGGGAT+CGG - chr3_4:66694280-66694299 Msa0515470:intron 50.0%
ATTCACTCCTCTGCTACAGC+TGG - chr3_4:66694729-66694748 Msa0515470:intron 50.0%
TTGCCTCCATGGCGTTAACA+TGG + chr3_4:66694908-66694927 Msa0515460:three_prime_UTR 50.0%
TCAGGGACTCACCACGGTTA+AGG + chr3_4:66692125-66692144 Msa0515460:five_prime_UTR 55.0%
! CAGATACCTGGTGACTTGGC+TGG - chr3_4:66693063-66693082 None:intergenic 55.0%
! TGAAGGCGCAGAGCTTCCTT+TGG - chr3_4:66693522-66693541 Msa0515470:intron 55.0%
GCCAGAAGCAGAGTTCAAGG+AGG + chr3_4:66693575-66693594 Msa0515460:CDS 55.0%
!!! CTGGTTTTGTGGCTGCGCTC+TGG - chr3_4:66693044-66693063 None:intergenic 60.0%
GGGGCAGGCACAGATGATAG+AGG - chr3_4:66693230-66693249 Msa0515470:three_prime_UTR 60.0%
! TTCAGGAGAGTATGCGGGGC+AGG - chr3_4:66693245-66693264 Msa0515470:three_prime_UTR 60.0%
AGCACGTCTGGCAATGTCCC+AGG - chr3_4:66693828-66693847 Msa0515470:intron 60.0%
ACTCCTCTGCTACAGCTGGC+AGG - chr3_4:66694725-66694744 Msa0515470:intron 60.0%
GGACCTGCCAGCTGTAGCAG+AGG + chr3_4:66694719-66694738 Msa0515460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66691263 66695022 66691263 ID=Msa0515460;Name=Msa0515460
chr3_4 mRNA 66691263 66695022 66691263 ID=Msa0515460-mRNA-1;Parent=Msa0515460;Name=Msa0515460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1381|1|1|1|0.83|0.71|7|276|232
chr3_4 exon 66691263 66691400 66691263 ID=Msa0515460-mRNA-1:exon:17206;Parent=Msa0515460-mRNA-1
chr3_4 exon 66691631 66693075 66691631 ID=Msa0515460-mRNA-1:exon:17207;Parent=Msa0515460-mRNA-1
chr3_4 exon 66693169 66693215 66693169 ID=Msa0515460-mRNA-1:exon:17208;Parent=Msa0515460-mRNA-1
chr3_4 exon 66693504 66693596 66693504 ID=Msa0515460-mRNA-1:exon:17209;Parent=Msa0515460-mRNA-1
chr3_4 exon 66693767 66693905 66693767 ID=Msa0515460-mRNA-1:exon:17210;Parent=Msa0515460-mRNA-1
chr3_4 exon 66693991 66694093 66693991 ID=Msa0515460-mRNA-1:exon:17211;Parent=Msa0515460-mRNA-1
chr3_4 exon 66694632 66695022 66694632 ID=Msa0515460-mRNA-1:exon:17212;Parent=Msa0515460-mRNA-1
chr3_4 five_prime_UTR 66691263 66691400 66691263 ID=Msa0515460-mRNA-1:five_prime_utr;Parent=Msa0515460-mRNA-1
chr3_4 five_prime_UTR 66691631 66692873 66691631 ID=Msa0515460-mRNA-1:five_prime_utr;Parent=Msa0515460-mRNA-1
chr3_4 CDS 66692874 66693075 66692874 ID=Msa0515460-mRNA-1:cds;Parent=Msa0515460-mRNA-1
chr3_4 CDS 66693169 66693215 66693169 ID=Msa0515460-mRNA-1:cds;Parent=Msa0515460-mRNA-1
chr3_4 CDS 66693504 66693596 66693504 ID=Msa0515460-mRNA-1:cds;Parent=Msa0515460-mRNA-1
chr3_4 CDS 66693767 66693905 66693767 ID=Msa0515460-mRNA-1:cds;Parent=Msa0515460-mRNA-1
chr3_4 CDS 66693991 66694093 66693991 ID=Msa0515460-mRNA-1:cds;Parent=Msa0515460-mRNA-1
chr3_4 CDS 66694632 66694746 66694632 ID=Msa0515460-mRNA-1:cds;Parent=Msa0515460-mRNA-1
chr3_4 three_prime_UTR 66694747 66695022 66694747 ID=Msa0515460-mRNA-1:three_prime_utr;Parent=Msa0515460-mRNA-1
Gene Sequence

>Msa0515460

ATGGCTTTTACATCAACTGCTCTACAATATTCATCCACATCATATTTACAATCCTGGGTACCTTCCTTAGAAGGTACACGTGATCAAAATTCATGGTGCGTCAGAGTGAGATCATACAAACCCAATTCTCAAAAATCACAACAGAACTTTGCAAGAGGGATTACAATCCAGAGCGCAGCCACAAAACCAGCCAAGTCACCAGCTGAAGAAGAATGGAAAGTTAAGCGAGAATTGCTGCTGCAAAAAAGGGTAAAAAGTGTGGAGCCAAAGGAAGCTCTGCGCCTTCAGAAAGAAAATAATTTTGTGATTCTTGATGTAAGGCCAGAAGCAGAGTTCAAGGAGGGCCATCCCCCAGATGCAATTAACGTGCAAGTTTACAGGCTTATAAAAGAATGGACAGCCTGGGACATTGCCAGACGTGCTGCATTTGCATTTTTTGGTATTTTCTCTGGCACAGAAGAAAATCCCGAGTTTATCAAGTCTGTCGATGAAAAATTAGATAAAAATGCAAAGATAATAGTAGCTTGCTCAGCAGGAGGAACAATGAAACCAACACAAAATCTGCCACAAGGTCAACAATCTAGGTCTCTAATAGCAGCTTACTTGCTAGTCCTTAATGGGTACAACAACGTCTTCCATCTAGAAGGTGGGCTTTACAAATGGTTTAAAGAGGACCTGCCAGCTGTAGCAGAGGAGTGA

Protein sequence

>Msa0515460

MAFTSTALQYSSTSYLQSWVPSLEGTRDQNSWCVRVRSYKPNSQKSQQNFARGITIQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVDEKLDKNAKIIVACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE*