AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718070 MtrunA17_Chr5g0407081 89.492 847 27 4 1 786 1 846 0.0 1491
Msa0718070 MtrunA17_Chr5g0408021 84.694 98 15 0 423 520 5 102 1.07e-46 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718070 AT2G17550.1 39.633 873 340 32 1 785 1 774 3.12e-150 459
Msa0718070 AT2G17550.2 41.051 799 315 30 44 785 1 700 9.08e-144 439

Find 166 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTATTCACTTGATAATT+TGG 0.153873 5_1:+12228257 Msa0718070:CDS
ATTCAGACTCAGACGGTTTC+TGG 0.172392 5_1:-12227834 None:intergenic
AACATGCACAATTTGGATTT+AGG 0.175010 5_1:+12228757 Msa0718070:three_prime_UTR
CTGGTTTATACTTTGGTTCT+TGG 0.181940 5_1:+12227911 Msa0718070:CDS
TGATAAGAACATGCACAATT+TGG 0.184929 5_1:+12228750 Msa0718070:three_prime_UTR
TACATGATCATTACACAAAT+TGG 0.220293 5_1:+12228473 Msa0718070:three_prime_UTR
TAAAAGAATAAGTGAAAATA+TGG 0.225343 5_1:+12225639 Msa0718070:CDS
GATGGATGGAGCCGGAATTT+TGG 0.234500 5_1:+12225787 Msa0718070:CDS
CTTGTGAGCATGGACTTTCT+TGG 0.235543 5_1:-12224636 None:intergenic
GAATCACTTTCAGTTGTTCT+TGG 0.245622 5_1:+12228099 Msa0718070:CDS
GTTATAAGATTTGATCATTA+AGG 0.248170 5_1:-12226055 None:intergenic
AGCAAAACTGTAACTCAAAT+TGG 0.269194 5_1:-12226880 None:intergenic
AGGAACTGTTGAAGTTAGTA+TGG 0.285855 5_1:+12228193 Msa0718070:CDS
ACATGCACAATTTGGATTTA+GGG 0.290103 5_1:+12228758 Msa0718070:three_prime_UTR
AGAGATTTACTTGTTGCTTC+TGG 0.294038 5_1:+12227892 Msa0718070:CDS
GCTAGAAACACTTCCGATTT+CGG 0.300734 5_1:-12225914 None:intergenic
GCCTTTGTTCTCCAAAATTC+CGG 0.301116 5_1:-12225798 None:intergenic
TGGAATAAGTCTTTGTTAAG+AGG 0.301570 5_1:+12227931 Msa0718070:CDS
TGAATCTCTACTGATAAATT+CGG 0.305013 5_1:-12226454 None:intergenic
AAAATCATCATACCAATAAA+TGG 0.305159 5_1:-12223833 None:intergenic
AAATACAAACAGGATCTTTC+AGG 0.313229 5_1:+12226619 Msa0718070:CDS
GCAGTGTTCATGAAGACTTT+TGG 0.334930 5_1:+12227458 Msa0718070:CDS
ATTTGACGAGCAATAAGTTT+AGG 0.338979 5_1:-12226321 None:intergenic
CAATGAAGAGATCAATATAT+TGG 0.342843 5_1:+12228320 Msa0718070:CDS
TGAATATCTTGTAGCATTGT+AGG 0.346382 5_1:+12224471 Msa0718070:intron
TGTGTGAGTGTGTGTGATGT+AGG 0.353846 5_1:+12228568 Msa0718070:three_prime_UTR
CATGAGTGAAGTGAATAATT+AGG 0.357648 5_1:+12228621 Msa0718070:three_prime_UTR
ATATCAAGCAGCAAGGTTTC+AGG 0.359927 5_1:+12225876 Msa0718070:CDS
GACATCAGCTCTGGTTTAAC+TGG 0.360505 5_1:+12227562 Msa0718070:CDS
GCTACAAAACTATATCAATT+AGG 0.361532 5_1:-12228506 None:intergenic
AGGAACAGGCTACGAGGTTA+AGG 0.366082 5_1:-12223291 None:intergenic
TTGAGGACCTGAGAGTCTTT+TGG 0.371480 5_1:+12224559 Msa0718070:five_prime_UTR
CTTAGAGTTCTGCTCTTTGA+AGG 0.378221 5_1:-12226015 None:intergenic
TCAAGATCAGGAACATCATT+TGG 0.380795 5_1:+12226723 Msa0718070:CDS
ATGGAAGGAGTTCAGTTAGT+TGG 0.381437 5_1:+12225689 Msa0718070:CDS
TGTTCAAAGTTTGCCGAAAT+CGG 0.382797 5_1:+12225901 Msa0718070:CDS
GTTGCTTCTGGTTTATACTT+TGG 0.384654 5_1:+12227904 Msa0718070:CDS
TATTCAATCATGAAGAGAAT+TGG 0.394633 5_1:+12226136 Msa0718070:CDS
GATACATATGCAAAGCCTAT+TGG 0.399418 5_1:+12227955 Msa0718070:CDS
GAATCTCTACTGATAAATTC+GGG 0.401716 5_1:-12226453 None:intergenic
GAGAATTGGACTAGTTCAAC+AGG 0.404604 5_1:+12226150 Msa0718070:CDS
GAAATGAATCGAATTCAATA+TGG 0.405359 5_1:-12225738 None:intergenic
TTGAGTTCAATCCCTTGGTC+TGG 0.405396 5_1:+12228291 Msa0718070:CDS
AAGCCTTGTGGCAAGGTTGA+TGG 0.415899 5_1:+12225570 Msa0718070:CDS
AACATTTGAGTTCAATCCCT+TGG 0.418429 5_1:+12228286 Msa0718070:CDS
TGGAAGGAGTTCAGTTAGTT+GGG 0.424198 5_1:+12225690 Msa0718070:CDS
TCGTCTCTTGAGGACAAATC+AGG 0.438083 5_1:-12227514 None:intergenic
ACCCTTGCTCCACCAATGTA+TGG 0.439738 5_1:-12228448 None:intergenic
AGCCTTGTGGCAAGGTTGAT+GGG 0.441746 5_1:+12225571 Msa0718070:CDS
GACAAATCAGGAGTTGATAC+TGG 0.442829 5_1:-12227502 None:intergenic
ATCAACCTTGCCACAAGGCT+TGG 0.445266 5_1:-12225568 None:intergenic
GTGTGAGTGTGTGTGATGTA+GGG 0.445746 5_1:+12228569 Msa0718070:three_prime_UTR
GATGTTCCTGATCTTGATAC+AGG 0.455850 5_1:-12226717 None:intergenic
CAACCGCTTCAAGCTTCCTC+CGG 0.459478 5_1:-12226791 None:intergenic
AATGATAATGACAGAGGAAC+AGG 0.459544 5_1:-12223305 None:intergenic
AAGGATCTTACAAGGTTCCT+TGG 0.460932 5_1:-12226687 None:intergenic
GATCAATATATTGGAAAGAG+AGG 0.461233 5_1:+12228329 Msa0718070:CDS
AAAAGAATAAGTGAAAATAT+GGG 0.462177 5_1:+12225640 Msa0718070:CDS
TAGAACGGGCGTAATTCTAA+TGG 0.464941 5_1:+12224515 Msa0718070:five_prime_UTR
TCATGATTGAATATGCAATC+AGG 0.468328 5_1:-12226126 None:intergenic
CTGATAAATTCGGGGACACT+TGG 0.469625 5_1:-12226444 None:intergenic
TCGGGAACATCCACAGGAAA+AGG 0.478838 5_1:+12225822 Msa0718070:CDS
TTTGAAATGTGCAGATGAAT+GGG 0.480380 5_1:+12226575 Msa0718070:CDS
GAAGAAACAGAAATACAAAC+AGG 0.481676 5_1:+12226609 Msa0718070:CDS
TCTGCTCCTGTATCAAGATC+AGG 0.482542 5_1:+12226711 Msa0718070:CDS
GGAATAAGTCTTTGTTAAGA+GGG 0.490427 5_1:+12227932 Msa0718070:CDS
GGAACAGGCTACGAGGTTAA+GGG 0.490615 5_1:-12223290 None:intergenic
AATTTATCAGTAGAGATTCA+AGG 0.492213 5_1:+12226457 Msa0718070:CDS
AGTTCAACAGGGACTTTACC+AGG 0.494157 5_1:+12226162 Msa0718070:CDS
CTACAAAGAAAAGTTAGAAC+GGG 0.495839 5_1:+12224501 Msa0718070:five_prime_UTR
GAAACCGTCTGAGTCTGAAT+TGG 0.496615 5_1:+12227837 Msa0718070:CDS
TTGCCGTGTGCTTGATCGAT+TGG 0.498798 5_1:-12225539 None:intergenic
TCTCTTATGTAAGATTCTGC+TGG 0.500088 5_1:-12227874 None:intergenic
TTCCATACATTGGTGGAGCA+AGG 0.501510 5_1:+12228446 Msa0718070:three_prime_UTR
CTTCCTCCGGATATGAGCCC+CGG 0.510820 5_1:-12226778 None:intergenic
GCAACAGGTTTAGTGTCTAC+AGG 0.513735 5_1:-12225607 None:intergenic
CAGTCTACCAAAAGACTCTC+AGG 0.518607 5_1:-12224566 None:intergenic
TCCATGTTGTCGCCGCCTCA+AGG 0.519717 5_1:+12228168 Msa0718070:CDS
AACAGTTCCTTTCCTTGAGG+CGG 0.522924 5_1:-12228180 None:intergenic
GCAATAAGTTTAGGATCAGA+TGG 0.523659 5_1:-12226312 None:intergenic
TTTCACAAAGTTAAAGATGA+CGG 0.527796 5_1:+12225757 Msa0718070:CDS
TGGTAAGAGAAATCAATCAA+TGG 0.527992 5_1:+12226920 Msa0718070:CDS
ACACTGCTGCACACAGATGC+AGG 0.529299 5_1:-12227442 None:intergenic
ATGTGGGTGTTGTTGAAAAG+TGG 0.530723 5_1:-12223744 None:intergenic
GAATGATGAAAATTCTATGA+AGG 0.533306 5_1:+12228026 Msa0718070:CDS
TTGAATATGCAATCAGGACC+AGG 0.536062 5_1:-12226120 None:intergenic
AATAATTGTTATTCAAACGC+TGG 0.536295 5_1:+12225484 Msa0718070:CDS
AGAGAATCTGAACAGCGAAA+AGG 0.539618 5_1:+12225951 Msa0718070:CDS
AGGTTTCAAGATAACGATCC+TGG 0.540036 5_1:-12226100 None:intergenic
TTGTTGATTTGGCAGAGCTA+AGG 0.541285 5_1:+12227761 Msa0718070:intron
CACAGCAGTCTCGTCTCTTG+AGG 0.541373 5_1:-12227524 None:intergenic
GAAAGCTTCTACTAGAGGAC+CGG 0.541402 5_1:+12226745 Msa0718070:CDS
ATTATCAAGTAGAAGAAGAC+TGG 0.542682 5_1:+12225455 Msa0718070:intron
GAATATCTTGTAGCATTGTA+GGG 0.545861 5_1:+12224472 Msa0718070:intron
TTCAAGATAACGATCCTGGT+TGG 0.547288 5_1:-12226096 None:intergenic
CTGCACACAGATGCAGGACT+CGG 0.548951 5_1:-12227436 None:intergenic
CTGAATCTAGACAGTGTCAA+AGG 0.551664 5_1:-12228126 None:intergenic
TATGATGTCTCTTGTGAGCA+TGG 0.552181 5_1:-12224646 None:intergenic
AGTGAATAAAGAGACATATC+CGG 0.556492 5_1:-12228246 None:intergenic
AAGGCGTCGGGAACATCCAC+AGG 0.557978 5_1:+12225816 Msa0718070:CDS
TGAATTCAATCAAGGGAGGA+TGG 0.560434 5_1:+12224613 Msa0718070:CDS
AAAGATGACGGCGATGATGA+TGG 0.560500 5_1:+12225769 Msa0718070:CDS
TCCATACATTGGTGGAGCAA+GGG 0.560515 5_1:+12228447 Msa0718070:three_prime_UTR
TGATTGAGAAAATAGTTATG+TGG 0.562809 5_1:-12223761 None:intergenic
GTGTCTCAATATCACTTCCT+CGG 0.563040 5_1:-12226275 None:intergenic
CATTGATTATTCCAGACCAA+GGG 0.564059 5_1:-12228302 None:intergenic
TGTGAGTGTGTGTGATGTAG+GGG 0.567641 5_1:+12228570 Msa0718070:three_prime_UTR
GCCTTGTGGCAAGGTTGATG+GGG 0.567662 5_1:+12225572 Msa0718070:CDS
ACAAATCAAGCAAAATCTTG+TGG 0.568803 5_1:-12228071 None:intergenic
GTTGTCGCCGCCTCAAGGAA+AGG 0.569359 5_1:+12228173 Msa0718070:CDS
ACAGAGAGTTGTTGTCTCCA+AGG 0.575318 5_1:+12226670 Msa0718070:CDS
AACTGTCGGAAAAGGTTATG+TGG 0.576766 5_1:+12226251 Msa0718070:CDS
TGTTTCGTTATATCCTTCAC+CGG 0.577070 5_1:+12228227 Msa0718070:CDS
GGAACTGTTGAAGTTAGTAT+GGG 0.578282 5_1:+12228194 Msa0718070:CDS
GAGCCCCGGTTAAAATGTGC+CGG 0.579772 5_1:-12226764 None:intergenic
ACTACAAAGAAAAGTTAGAA+CGG 0.581662 5_1:+12224500 Msa0718070:five_prime_UTR
TCATTGATTATTCCAGACCA+AGG 0.588363 5_1:-12228303 None:intergenic
TCCTTGAGGCGGCGACAACA+TGG 0.589447 5_1:-12228169 None:intergenic
TCTTCTATACTATGTCTACC+TGG 0.595004 5_1:-12226180 None:intergenic
TAAAGAGTTCCATACATTGG+TGG 0.596732 5_1:+12228439 Msa0718070:three_prime_UTR
ATTTGGAAAGCTTCTACTAG+AGG 0.598028 5_1:+12226740 Msa0718070:CDS
TAAAGAGACATATCCGGTGA+AGG 0.598715 5_1:-12228240 None:intergenic
AATTCTAATGGAGTGACACA+TGG 0.600182 5_1:+12224527 Msa0718070:five_prime_UTR
CAAACAAGGGAACAAATGGA+AGG 0.600461 5_1:+12225674 Msa0718070:CDS
ACACATGGAAGGTGAAATTG+AGG 0.602173 5_1:+12224542 Msa0718070:five_prime_UTR
ATGCACCAAGCCTTGTGGCA+AGG 0.604863 5_1:+12225563 Msa0718070:CDS
TCTTGATACAGGAGCAGACA+AGG 0.604956 5_1:-12226706 None:intergenic
AGGATCGTTATCTTGAAACC+TGG 0.605461 5_1:+12226102 Msa0718070:CDS
GATTGAGAAAATAGTTATGT+GGG 0.606247 5_1:-12223760 None:intergenic
AAAGAATAAGTGAAAATATG+GGG 0.610226 5_1:+12225641 Msa0718070:CDS
TTCAACAGTTCCTTTCCTTG+AGG 0.611963 5_1:-12228183 None:intergenic
TTGAAGCATATCAAGCAGCA+AGG 0.612487 5_1:+12225869 Msa0718070:CDS
GCGATGATGATGGATGGAGC+CGG 0.614284 5_1:+12225779 Msa0718070:CDS
TGAGCAGACTGAATTTGAGT+CGG 0.615214 5_1:-12226379 None:intergenic
TAGATGCATCTTCTCCAACC+AGG 0.617998 5_1:+12226082 Msa0718070:CDS
CACATAATACAAGTATGCAA+AGG 0.618748 5_1:+12225983 Msa0718070:CDS
ACCCCATCAACCTTGCCACA+AGG 0.620275 5_1:-12225573 None:intergenic
ATGACGGCGATGATGATGGA+TGG 0.620775 5_1:+12225773 Msa0718070:CDS
CAATAAAGAGTTCCATACAT+TGG 0.622061 5_1:+12228436 Msa0718070:three_prime_UTR
CTGATGTCTCTGAAAACTTG+TGG 0.622401 5_1:-12227547 None:intergenic
TGCACCAATTCAGACTCAGA+CGG 0.623432 5_1:-12227841 None:intergenic
GAATAAGTCTTTGTTAAGAG+GGG 0.627428 5_1:+12227933 Msa0718070:CDS
GTGAGTGTGTGTGATGTAGG+GGG 0.628186 5_1:+12228571 Msa0718070:three_prime_UTR
ACTTGATTCTAGTGATGTCG+AGG 0.630630 5_1:+12227798 Msa0718070:CDS
TTTCTGAATTCAATCAAGGG+AGG 0.631491 5_1:+12224609 Msa0718070:CDS
ACAAGATCATACGAAGGTGA+AGG 0.634923 5_1:+12226408 Msa0718070:CDS
TATCCAATCGATCAAGCACA+CGG 0.640457 5_1:+12225536 Msa0718070:CDS
GAGCAGACAAGGATCTTACA+AGG 0.642350 5_1:-12226695 None:intergenic
CTAATGGAGTGACACATGGA+AGG 0.642974 5_1:+12224531 Msa0718070:five_prime_UTR
TAACCGGGGCTCATATCCGG+AGG 0.647535 5_1:+12226775 Msa0718070:CDS
TTGGAGACAACAACTCTCTG+TGG 0.648215 5_1:-12226668 None:intergenic
TCTTGTTGAAGAACTCACAA+AGG 0.659944 5_1:+12228374 Msa0718070:CDS
GCAATATGCACCAAGCCTTG+TGG 0.667401 5_1:+12225558 Msa0718070:CDS
AATCTAGACAGTGTCAAAGG+TGG 0.669822 5_1:-12228123 None:intergenic
GGAAAAGGTTATGTGGTCCG+AGG 0.675521 5_1:+12226258 Msa0718070:CDS
TATCCGGAGGAAGCTTGAAG+CGG 0.676693 5_1:+12226788 Msa0718070:CDS
CGTTTGAAATGCGAACTGCA+AGG 0.679951 5_1:+12226225 Msa0718070:CDS
GCTCACAAGAGACATCATAG+TGG 0.683907 5_1:+12224650 Msa0718070:CDS
GTGACTAATGATAATGACAG+AGG 0.684571 5_1:-12223311 None:intergenic
AATCTCTACTGATAAATTCG+GGG 0.689534 5_1:-12226452 None:intergenic
CACACAGATGCAGGACTCGG+AGG 0.714130 5_1:-12227433 None:intergenic
GAATCAACAAGATCATACGA+AGG 0.725807 5_1:+12226402 Msa0718070:CDS
GTGAAGGATATAACGAAACA+CGG 0.727910 5_1:-12228224 None:intergenic
TGACAGAGGAACAGGCTACG+AGG 0.744006 5_1:-12223297 None:intergenic
AGAATTGGACTAGTTCAACA+GGG 0.749710 5_1:+12226151 Msa0718070:CDS
TCTTTAGGAGAACTACACTG+AGG 0.805453 5_1:+12227408 Msa0718070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - chr5_1:12223424-12223443 None:intergenic 10.0%
!! TATACATTAGTAAAAAAGTA+TGG + chr5_1:12223528-12223547 Msa0718070:intron 15.0%
!! TAAAAGAATAAGTGAAAATA+TGG + chr5_1:12225639-12225658 Msa0718070:CDS 15.0%
!! AAAAGAATAAGTGAAAATAT+GGG + chr5_1:12225640-12225659 Msa0718070:CDS 15.0%
!! TCTTAACTTTATATTTATTG+TGG + chr5_1:12227160-12227179 Msa0718070:intron 15.0%
!! AACAAGATAATAAAAAATCA+AGG + chr5_1:12227199-12227218 Msa0718070:intron 15.0%
!! ACAAGATAATAAAAAATCAA+GGG + chr5_1:12227200-12227219 Msa0718070:intron 15.0%
!!! TTCAAAAAGTCTTCTTTTTT+TGG + chr5_1:12223627-12223646 Msa0718070:five_prime_UTR 20.0%
!!! TCAAAAAGTCTTCTTTTTTT+GGG + chr5_1:12223628-12223647 Msa0718070:five_prime_UTR 20.0%
!! AAAATCATCATACCAATAAA+TGG - chr5_1:12223836-12223855 None:intergenic 20.0%
!! TTCAAAAGCTTATTTGATAT+TGG + chr5_1:12224157-12224176 Msa0718070:intron 20.0%
!!! GAAATATGATAGTATTTTTC+TGG - chr5_1:12225122-12225141 None:intergenic 20.0%
!! CATATTGAACATAATTACAA+TGG - chr5_1:12225178-12225197 None:intergenic 20.0%
!! ACTAAATTCAATTCAACAAT+TGG - chr5_1:12225414-12225433 None:intergenic 20.0%
!! AAAGAATAAGTGAAAATATG+GGG + chr5_1:12225641-12225660 Msa0718070:CDS 20.0%
!! GTTATAAGATTTGATCATTA+AGG - chr5_1:12226058-12226077 None:intergenic 20.0%
!! TAACTTTATATTTATTGTGG+AGG + chr5_1:12227163-12227182 Msa0718070:intron 20.0%
!! AACTTTATATTTATTGTGGA+GGG + chr5_1:12227164-12227183 Msa0718070:intron 20.0%
!! CATAATAAAACAACATTAAC+CGG - chr5_1:12227651-12227670 None:intergenic 20.0%
!!! ATTGGACATGTATTTTGAAA+CGG + chr5_1:12223587-12223606 Msa0718070:intron 25.0%
! CTTTGTGAAAAAATGGAAAT+GGG - chr5_1:12223712-12223731 None:intergenic 25.0%
! ACTTTGTGAAAAAATGGAAA+TGG - chr5_1:12223713-12223732 None:intergenic 25.0%
! CTTCAAACTTTGTGAAAAAA+TGG - chr5_1:12223719-12223738 None:intergenic 25.0%
! GATTGAGAAAATAGTTATGT+GGG - chr5_1:12223763-12223782 None:intergenic 25.0%
! TGATTGAGAAAATAGTTATG+TGG - chr5_1:12223764-12223783 None:intergenic 25.0%
!! TGAATTTTCTCACCATTTAT+TGG + chr5_1:12223821-12223840 Msa0718070:five_prime_UTR 25.0%
!!! TTTTTTCTTTTGTGTGTGTT+TGG + chr5_1:12223853-12223872 Msa0718070:intron 25.0%
! TTGTTGTCAAAGTTATGATT+TGG + chr5_1:12223957-12223976 Msa0718070:intron 25.0%
! TCAACTGAAAACAAGAAATT+GGG - chr5_1:12224121-12224140 None:intergenic 25.0%
! CTTATTTGATATTGGAAGAT+TGG + chr5_1:12224165-12224184 Msa0718070:intron 25.0%
!!! AGTTAGTTGTTTCTATTGAT+TGG + chr5_1:12224199-12224218 Msa0718070:intron 25.0%
! TTGTTATGTATTTGTCCTTA+AGG + chr5_1:12224254-12224273 Msa0718070:intron 25.0%
! ATGTAAGATTCCTTTATAGA+TGG - chr5_1:12224292-12224311 None:intergenic 25.0%
! AAATTTGAAGAAAGATGTGT+TGG + chr5_1:12224402-12224421 Msa0718070:intron 25.0%
! ACTACAAAGAAAAGTTAGAA+CGG + chr5_1:12224500-12224519 Msa0718070:five_prime_UTR 25.0%
!! ACTTTTCTGAATTCAATCAA+GGG + chr5_1:12224606-12224625 Msa0718070:CDS 25.0%
! TAAAAACAATCAAGCAAAAG+AGG - chr5_1:12224850-12224869 None:intergenic 25.0%
! CAACATCATATTAAATCAAG+TGG + chr5_1:12225024-12225043 Msa0718070:intron 25.0%
!! AATAATTGTTATTCAAACGC+TGG + chr5_1:12225484-12225503 Msa0718070:CDS 25.0%
!! TCACTTATTCTTTTATCTGA+TGG - chr5_1:12225634-12225653 None:intergenic 25.0%
! GAAATGAATCGAATTCAATA+TGG - chr5_1:12225741-12225760 None:intergenic 25.0%
! TTTCACAAAGTTAAAGATGA+CGG + chr5_1:12225757-12225776 Msa0718070:CDS 25.0%
! TATTCAATCATGAAGAGAAT+TGG + chr5_1:12226136-12226155 Msa0718070:CDS 25.0%
!! TAGTATAGAAGATTTTCTTG+AGG + chr5_1:12226191-12226210 Msa0718070:CDS 25.0%
! TGAATCTCTACTGATAAATT+CGG - chr5_1:12226457-12226476 None:intergenic 25.0%
! AATTTATCAGTAGAGATTCA+AGG + chr5_1:12226457-12226476 Msa0718070:CDS 25.0%
! ATCTTAAAACCGCAATAAAA+AGG + chr5_1:12227290-12227309 Msa0718070:intron 25.0%
! ATGAAATATAAAGGTCATCA+TGG - chr5_1:12227347-12227366 None:intergenic 25.0%
! CAACTCTGAATGAAATATAA+AGG - chr5_1:12227356-12227375 None:intergenic 25.0%
!! CTTTTCTTGAATCAAAACTA+TGG - chr5_1:12227628-12227647 None:intergenic 25.0%
! AGTTTGAAAAGATATTCACT+CGG - chr5_1:12227720-12227739 None:intergenic 25.0%
!! GATTTATTTGCTTGTTGATT+TGG + chr5_1:12227750-12227769 Msa0718070:intron 25.0%
! TCAAAAACAGAATTTCCAAT+AGG - chr5_1:12227973-12227992 None:intergenic 25.0%
!!! AAATTCTGTTTTTGAAGAAG+TGG + chr5_1:12227978-12227997 Msa0718070:CDS 25.0%
! GAATGATGAAAATTCTATGA+AGG + chr5_1:12228026-12228045 Msa0718070:CDS 25.0%
! CAATGAAGAGATCAATATAT+TGG + chr5_1:12228320-12228339 Msa0718070:CDS 25.0%
! TACATGATCATTACACAAAT+TGG + chr5_1:12228473-12228492 Msa0718070:three_prime_UTR 25.0%
! GCTACAAAACTATATCAATT+AGG - chr5_1:12228509-12228528 None:intergenic 25.0%
!!! AATTGATATAGTTTTGTAGC+TGG + chr5_1:12228509-12228528 Msa0718070:three_prime_UTR 25.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr5_1:12223366-12223385 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr5_1:12223569-12223588 Msa0718070:intron 30.0%
!! AATGGGTTGAACTAAAAAAG+TGG - chr5_1:12223695-12223714 None:intergenic 30.0%
TGAATGAATCATTCTCTGTT+TGG + chr5_1:12223892-12223911 Msa0718070:intron 30.0%
TGCTCAAGAAATTTGATGTT+TGG + chr5_1:12224004-12224023 Msa0718070:intron 30.0%
!!! GAAACTGATTTTTGAGTTGT+TGG + chr5_1:12224051-12224070 Msa0718070:intron 30.0%
GTCAACTGAAAACAAGAAAT+TGG - chr5_1:12224122-12224141 None:intergenic 30.0%
TGAATATCTTGTAGCATTGT+AGG + chr5_1:12224471-12224490 Msa0718070:intron 30.0%
GAATATCTTGTAGCATTGTA+GGG + chr5_1:12224472-12224491 Msa0718070:intron 30.0%
CTACAAAGAAAAGTTAGAAC+GGG + chr5_1:12224501-12224520 Msa0718070:five_prime_UTR 30.0%
! CACTTTTCTGAATTCAATCA+AGG + chr5_1:12224605-12224624 Msa0718070:CDS 30.0%
ATGCATATCTTGCTGAAATT+CGG + chr5_1:12224758-12224777 Msa0718070:intron 30.0%
GGGAAGAGAGAAAAAAATTA+CGG - chr5_1:12224824-12224843 None:intergenic 30.0%
GTCTTTCTCAAGATTCTAAA+AGG - chr5_1:12225203-12225222 None:intergenic 30.0%
CAAGAACTATGGTTTATCTT+TGG - chr5_1:12225368-12225387 None:intergenic 30.0%
ATAAACCATAGTTCTTGTTC+TGG + chr5_1:12225371-12225390 Msa0718070:intron 30.0%
TAATACCAGAACAAGAACTA+TGG - chr5_1:12225379-12225398 None:intergenic 30.0%
ATTATCAAGTAGAAGAAGAC+TGG + chr5_1:12225455-12225474 Msa0718070:intron 30.0%
! TTTTCAAACAAGGGAACAAA+TGG + chr5_1:12225670-12225689 Msa0718070:CDS 30.0%
CACATAATACAAGTATGCAA+AGG + chr5_1:12225983-12226002 Msa0718070:CDS 30.0%
TCATGATTGAATATGCAATC+AGG - chr5_1:12226129-12226148 None:intergenic 30.0%
! TATAGAAGATTTTCTTGAGG+AGG + chr5_1:12226194-12226213 Msa0718070:CDS 30.0%
ATTTGACGAGCAATAAGTTT+AGG - chr5_1:12226324-12226343 None:intergenic 30.0%
AATCTCTACTGATAAATTCG+GGG - chr5_1:12226455-12226474 None:intergenic 30.0%
GAATCTCTACTGATAAATTC+GGG - chr5_1:12226456-12226475 None:intergenic 30.0%
!!! TTTTGAAATGTGCAGATGAA+TGG + chr5_1:12226574-12226593 Msa0718070:CDS 30.0%
! TTTGAAATGTGCAGATGAAT+GGG + chr5_1:12226575-12226594 Msa0718070:CDS 30.0%
GAAGAAACAGAAATACAAAC+AGG + chr5_1:12226609-12226628 Msa0718070:CDS 30.0%
AAATACAAACAGGATCTTTC+AGG + chr5_1:12226619-12226638 Msa0718070:CDS 30.0%
AGCAAAACTGTAACTCAAAT+TGG - chr5_1:12226883-12226902 None:intergenic 30.0%
TGGTAAGAGAAATCAATCAA+TGG + chr5_1:12226920-12226939 Msa0718070:CDS 30.0%
! TTTTCTGCTATATGCTCTTT+AGG + chr5_1:12227393-12227412 Msa0718070:intron 30.0%
!!! AGTTTTGATTCAAGAAAAGC+CGG + chr5_1:12227629-12227648 Msa0718070:intron 30.0%
TGGAATAAGTCTTTGTTAAG+AGG + chr5_1:12227931-12227950 Msa0718070:CDS 30.0%
GGAATAAGTCTTTGTTAAGA+GGG + chr5_1:12227932-12227951 Msa0718070:CDS 30.0%
GAATAAGTCTTTGTTAAGAG+GGG + chr5_1:12227933-12227952 Msa0718070:CDS 30.0%
ACAAATCAAGCAAAATCTTG+TGG - chr5_1:12228074-12228093 None:intergenic 30.0%
AGTGAATAAAGAGACATATC+CGG - chr5_1:12228249-12228268 None:intergenic 30.0%
GATCAATATATTGGAAAGAG+AGG + chr5_1:12228329-12228348 Msa0718070:CDS 30.0%
CAATAAAGAGTTCCATACAT+TGG + chr5_1:12228436-12228455 Msa0718070:three_prime_UTR 30.0%
CATGAGTGAAGTGAATAATT+AGG + chr5_1:12228621-12228640 Msa0718070:three_prime_UTR 30.0%
TGATAAGAACATGCACAATT+TGG + chr5_1:12228750-12228769 Msa0718070:three_prime_UTR 30.0%
! AATGATAATGACAGAGGAAC+AGG - chr5_1:12223308-12223327 None:intergenic 35.0%
! GTGACTAATGATAATGACAG+AGG - chr5_1:12223314-12223333 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr5_1:12223591-12223610 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr5_1:12223407-12223426 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr5_1:12223591-12223610 Msa0718070:intron 35.0%
! GTTTCTAAGAGTGAATTCTG+AGG + chr5_1:12224026-12224045 Msa0718070:intron 35.0%
! GCAGATTAGTCCATCTATAA+AGG + chr5_1:12224279-12224298 Msa0718070:intron 35.0%
AATTCTAATGGAGTGACACA+TGG + chr5_1:12224527-12224546 Msa0718070:five_prime_UTR 35.0%
! AGTCTTTTGGTAGACTGTAT+GGG + chr5_1:12224572-12224591 Msa0718070:exon 35.0%
TTTCTGAATTCAATCAAGGG+AGG + chr5_1:12224609-12224628 Msa0718070:CDS 35.0%
TTCACTCATGTTATGATGAG+AGG + chr5_1:12224714-12224733 Msa0718070:intron 35.0%
TGCATATCTTGCTGAAATTC+GGG + chr5_1:12224759-12224778 Msa0718070:intron 35.0%
CAATCAAGCAAAAGAGGAAA+GGG - chr5_1:12224844-12224863 None:intergenic 35.0%
ACAATCAAGCAAAAGAGGAA+AGG - chr5_1:12224845-12224864 None:intergenic 35.0%
GTTGAAACATCTCAGAAGTA+CGG + chr5_1:12224943-12224962 Msa0718070:intron 35.0%
ACACATGAAGAGAAACTTAC+CGG - chr5_1:12224985-12225004 None:intergenic 35.0%
TGGTTAATGAGCTTCAGTTA+AGG + chr5_1:12225044-12225063 Msa0718070:intron 35.0%
GTCACCATCTCTATAAATGA+CGG + chr5_1:12225290-12225309 Msa0718070:intron 35.0%
GAAACCGTCATTTATAGAGA+TGG - chr5_1:12225297-12225316 None:intergenic 35.0%
CTCTATAAATGACGGTTTCA+TGG + chr5_1:12225298-12225317 Msa0718070:intron 35.0%
! GGGAAGAAGTTTTCAAACAA+GGG + chr5_1:12225661-12225680 Msa0718070:CDS 35.0%
TGTTCAAAGTTTGCCGAAAT+CGG + chr5_1:12225901-12225920 Msa0718070:CDS 35.0%
!! AGAATTGGACTAGTTCAACA+GGG + chr5_1:12226151-12226170 Msa0718070:CDS 35.0%
TCTTCTATACTATGTCTACC+TGG - chr5_1:12226183-12226202 None:intergenic 35.0%
! GCAATAAGTTTAGGATCAGA+TGG - chr5_1:12226315-12226334 None:intergenic 35.0%
GAATCAACAAGATCATACGA+AGG + chr5_1:12226402-12226421 Msa0718070:CDS 35.0%
TCAAGATCAGGAACATCATT+TGG + chr5_1:12226723-12226742 Msa0718070:CDS 35.0%
ATTTGGAAAGCTTCTACTAG+AGG + chr5_1:12226740-12226759 Msa0718070:CDS 35.0%
!! AGTTACAGTTTTGCTCTAAG+AGG + chr5_1:12226888-12226907 Msa0718070:CDS 35.0%
!!! GTTACAGTTTTGCTCTAAGA+GGG + chr5_1:12226889-12226908 Msa0718070:CDS 35.0%
CAATCAATGGTAGAATCACA+TGG + chr5_1:12226933-12226952 Msa0718070:intron 35.0%
CTTGTGATATCTCTCATTGT+CGG - chr5_1:12226972-12226991 None:intergenic 35.0%
ACAATGAGAGATATCACAAG+TGG + chr5_1:12226972-12226991 Msa0718070:intron 35.0%
! GAAAAGGAATGAGTAATGGA+GGG - chr5_1:12227051-12227070 None:intergenic 35.0%
TGAAAAGGAATGAGTAATGG+AGG - chr5_1:12227052-12227071 None:intergenic 35.0%
GGTTGAAAAGGAATGAGTAA+TGG - chr5_1:12227055-12227074 None:intergenic 35.0%
ATTGTGGAGGGATAAATAGA+TGG + chr5_1:12227176-12227195 Msa0718070:intron 35.0%
! CCGTTCATTCCTTTTTATTG+CGG - chr5_1:12227302-12227321 None:intergenic 35.0%
CCGCAATAAAAAGGAATGAA+CGG + chr5_1:12227299-12227318 Msa0718070:intron 35.0%
TCTCTTATGTAAGATTCTGC+TGG - chr5_1:12227877-12227896 None:intergenic 35.0%
! AGAGATTTACTTGTTGCTTC+TGG + chr5_1:12227892-12227911 Msa0718070:CDS 35.0%
!! GTTGCTTCTGGTTTATACTT+TGG + chr5_1:12227904-12227923 Msa0718070:CDS 35.0%
!! CTGGTTTATACTTTGGTTCT+TGG + chr5_1:12227911-12227930 Msa0718070:CDS 35.0%
GATACATATGCAAAGCCTAT+TGG + chr5_1:12227955-12227974 Msa0718070:CDS 35.0%
GAATCACTTTCAGTTGTTCT+TGG + chr5_1:12228099-12228118 Msa0718070:CDS 35.0%
AGGAACTGTTGAAGTTAGTA+TGG + chr5_1:12228193-12228212 Msa0718070:CDS 35.0%
GGAACTGTTGAAGTTAGTAT+GGG + chr5_1:12228194-12228213 Msa0718070:CDS 35.0%
GTGAAGGATATAACGAAACA+CGG - chr5_1:12228227-12228246 None:intergenic 35.0%
TGTTTCGTTATATCCTTCAC+CGG + chr5_1:12228227-12228246 Msa0718070:CDS 35.0%
! AACATTTGAGTTCAATCCCT+TGG + chr5_1:12228286-12228305 Msa0718070:CDS 35.0%
! CATTGATTATTCCAGACCAA+GGG - chr5_1:12228305-12228324 None:intergenic 35.0%
! TCATTGATTATTCCAGACCA+AGG - chr5_1:12228306-12228325 None:intergenic 35.0%
TCTTGTTGAAGAACTCACAA+AGG + chr5_1:12228374-12228393 Msa0718070:CDS 35.0%
TAAAGAGTTCCATACATTGG+TGG + chr5_1:12228439-12228458 Msa0718070:three_prime_UTR 35.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr5_1:12223590-12223609 None:intergenic 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr5_1:12223384-12223403 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr5_1:12223590-12223609 Msa0718070:intron 40.0%
!! ATGTGGGTGTTGTTGAAAAG+TGG - chr5_1:12223747-12223766 None:intergenic 40.0%
TGGACTAATCTGCTACCTTA+AGG - chr5_1:12224272-12224291 None:intergenic 40.0%
TAGAACGGGCGTAATTCTAA+TGG + chr5_1:12224515-12224534 Msa0718070:five_prime_UTR 40.0%
ACACATGGAAGGTGAAATTG+AGG + chr5_1:12224542-12224561 Msa0718070:five_prime_UTR 40.0%
! GAGTCTTTTGGTAGACTGTA+TGG + chr5_1:12224571-12224590 Msa0718070:exon 40.0%
! TTTTGGTAGACTGTATGGGA+GGG + chr5_1:12224576-12224595 Msa0718070:exon 40.0%
TGAATTCAATCAAGGGAGGA+TGG + chr5_1:12224613-12224632 Msa0718070:CDS 40.0%
TATGATGTCTCTTGTGAGCA+TGG - chr5_1:12224649-12224668 None:intergenic 40.0%
!!! GTTTTCCCCCTTATTTTCCT+CGG + chr5_1:12224781-12224800 Msa0718070:intron 40.0%
TGACAACCGAGGAAAATAAG+GGG - chr5_1:12224790-12224809 None:intergenic 40.0%
GTGACAACCGAGGAAAATAA+GGG - chr5_1:12224791-12224810 None:intergenic 40.0%
TGTGACAACCGAGGAAAATA+AGG - chr5_1:12224792-12224811 None:intergenic 40.0%
TTACCGGTAATTCTCCTTCT+GGG - chr5_1:12224969-12224988 None:intergenic 40.0%
GGTCAATGATTGTTTCAGCT+AGG - chr5_1:12225101-12225120 None:intergenic 40.0%
ACGAACAAGGGGATATAAGA+AGG - chr5_1:12225144-12225163 None:intergenic 40.0%
TTCTTATATCCCCTTGTTCG+TGG + chr5_1:12225143-12225162 Msa0718070:intron 40.0%
TCATTGTTACCACGAACAAG+GGG - chr5_1:12225155-12225174 None:intergenic 40.0%
GTCATTGTTACCACGAACAA+GGG - chr5_1:12225156-12225175 None:intergenic 40.0%
TATCCAATCGATCAAGCACA+CGG + chr5_1:12225536-12225555 Msa0718070:CDS 40.0%
! CTTTTATCTGATGGAGCAAC+AGG - chr5_1:12225625-12225644 None:intergenic 40.0%
! GGGGAAGAAGTTTTCAAACA+AGG + chr5_1:12225660-12225679 Msa0718070:CDS 40.0%
CAAACAAGGGAACAAATGGA+AGG + chr5_1:12225674-12225693 Msa0718070:CDS 40.0%
ATGGAAGGAGTTCAGTTAGT+TGG + chr5_1:12225689-12225708 Msa0718070:CDS 40.0%
TGGAAGGAGTTCAGTTAGTT+GGG + chr5_1:12225690-12225709 Msa0718070:CDS 40.0%
GCCTTTGTTCTCCAAAATTC+CGG - chr5_1:12225801-12225820 None:intergenic 40.0%
!! ATTTTGGAGAACAAAGGCGT+CGG + chr5_1:12225803-12225822 Msa0718070:CDS 40.0%
!!! TTCTGAAGTTCCTTTTCCTG+TGG - chr5_1:12225835-12225854 None:intergenic 40.0%
TTGAAGCATATCAAGCAGCA+AGG + chr5_1:12225869-12225888 Msa0718070:CDS 40.0%
ATATCAAGCAGCAAGGTTTC+AGG + chr5_1:12225876-12225895 Msa0718070:CDS 40.0%
GCTAGAAACACTTCCGATTT+CGG - chr5_1:12225917-12225936 None:intergenic 40.0%
AGAGAATCTGAACAGCGAAA+AGG + chr5_1:12225951-12225970 Msa0718070:CDS 40.0%
CTTAGAGTTCTGCTCTTTGA+AGG - chr5_1:12226018-12226037 None:intergenic 40.0%
TTCAAGATAACGATCCTGGT+TGG - chr5_1:12226099-12226118 None:intergenic 40.0%
AGGTTTCAAGATAACGATCC+TGG - chr5_1:12226103-12226122 None:intergenic 40.0%
AGGATCGTTATCTTGAAACC+TGG + chr5_1:12226102-12226121 Msa0718070:CDS 40.0%
TTGAATATGCAATCAGGACC+AGG - chr5_1:12226123-12226142 None:intergenic 40.0%
!! GAGAATTGGACTAGTTCAAC+AGG + chr5_1:12226150-12226169 Msa0718070:CDS 40.0%
GAACTGCAAGGAAAAACTGT+CGG + chr5_1:12226237-12226256 Msa0718070:CDS 40.0%
CAAGGAAAAACTGTCGGAAA+AGG + chr5_1:12226243-12226262 Msa0718070:CDS 40.0%
AACTGTCGGAAAAGGTTATG+TGG + chr5_1:12226251-12226270 Msa0718070:CDS 40.0%
GTGTCTCAATATCACTTCCT+CGG - chr5_1:12226278-12226297 None:intergenic 40.0%
TGAGCAGACTGAATTTGAGT+CGG - chr5_1:12226382-12226401 None:intergenic 40.0%
ACAAGATCATACGAAGGTGA+AGG + chr5_1:12226408-12226427 Msa0718070:CDS 40.0%
AAGGATCTTACAAGGTTCCT+TGG - chr5_1:12226690-12226709 None:intergenic 40.0%
GATGTTCCTGATCTTGATAC+AGG - chr5_1:12226720-12226739 None:intergenic 40.0%
TGATATCTCTCATTGTCGGA+CGG - chr5_1:12226968-12226987 None:intergenic 40.0%
CCAACAGTTCTTATGAACGA+CGG + chr5_1:12226996-12227015 Msa0718070:intron 40.0%
GAATTCTTCTGCAGAAGTGA+GGG - chr5_1:12227076-12227095 None:intergenic 40.0%
! TCTTTAGGAGAACTACACTG+AGG + chr5_1:12227408-12227427 Msa0718070:intron 40.0%
! GCAGTGTTCATGAAGACTTT+TGG + chr5_1:12227458-12227477 Msa0718070:CDS 40.0%
! GTGTTCATGAAGACTTTTGG+AGG + chr5_1:12227461-12227480 Msa0718070:CDS 40.0%
!! GACAAATCAGGAGTTGATAC+TGG - chr5_1:12227505-12227524 None:intergenic 40.0%
! CTGATGTCTCTGAAAACTTG+TGG - chr5_1:12227550-12227569 None:intergenic 40.0%
ATGGTATCATTGCACAATGC+TGG - chr5_1:12227609-12227628 None:intergenic 40.0%
!! TTGTTGATTTGGCAGAGCTA+AGG + chr5_1:12227761-12227780 Msa0718070:intron 40.0%
ACTTGATTCTAGTGATGTCG+AGG + chr5_1:12227798-12227817 Msa0718070:CDS 40.0%
AATCTAGACAGTGTCAAAGG+TGG - chr5_1:12228126-12228145 None:intergenic 40.0%
CTGAATCTAGACAGTGTCAA+AGG - chr5_1:12228129-12228148 None:intergenic 40.0%
TTCAACAGTTCCTTTCCTTG+AGG - chr5_1:12228186-12228205 None:intergenic 40.0%
TAAAGAGACATATCCGGTGA+AGG - chr5_1:12228243-12228262 None:intergenic 40.0%
! GTGCATTGGCATATGTGAAG+TGG - chr5_1:12223393-12223412 None:intergenic 45.0%
CTAATGGAGTGACACATGGA+AGG + chr5_1:12224531-12224550 Msa0718070:five_prime_UTR 45.0%
! TTGAGGACCTGAGAGTCTTT+TGG + chr5_1:12224559-12224578 Msa0718070:five_prime_UTR 45.0%
CAGTCTACCAAAAGACTCTC+AGG - chr5_1:12224569-12224588 None:intergenic 45.0%
! CTTTTGGTAGACTGTATGGG+AGG + chr5_1:12224575-12224594 Msa0718070:exon 45.0%
CTTGTGAGCATGGACTTTCT+TGG - chr5_1:12224639-12224658 None:intergenic 45.0%
GCTCACAAGAGACATCATAG+TGG + chr5_1:12224650-12224669 Msa0718070:CDS 45.0%
GACAACCGAGGAAAATAAGG+GGG - chr5_1:12224789-12224808 None:intergenic 45.0%
TCAAGAACATGTGACAACCG+AGG - chr5_1:12224801-12224820 None:intergenic 45.0%
CTTACCGGTAATTCTCCTTC+TGG - chr5_1:12224970-12224989 None:intergenic 45.0%
GGTCATTGTTACCACGAACA+AGG - chr5_1:12225157-12225176 None:intergenic 45.0%
ATCTTGAGAAAGACCCCTCA+AGG + chr5_1:12225209-12225228 Msa0718070:intron 45.0%
TACTCTCCTACAACCTTGAG+GGG - chr5_1:12225225-12225244 None:intergenic 45.0%
CTACTCTCCTACAACCTTGA+GGG - chr5_1:12225226-12225245 None:intergenic 45.0%
TCTACTCTCCTACAACCTTG+AGG - chr5_1:12225227-12225246 None:intergenic 45.0%
GGAGAGTAGAGCACATGTAT+AGG + chr5_1:12225237-12225256 Msa0718070:intron 45.0%
GTAGAGCACATGTATAGGCT+TGG + chr5_1:12225242-12225261 Msa0718070:intron 45.0%
! CACATGTATAGGCTTGGTCT+TGG + chr5_1:12225248-12225267 Msa0718070:intron 45.0%
GCAACAGGTTTAGTGTCTAC+AGG - chr5_1:12225610-12225629 None:intergenic 45.0%
! AAAGATGACGGCGATGATGA+TGG + chr5_1:12225769-12225788 Msa0718070:CDS 45.0%
!! GCCGGAATTTTGGAGAACAA+AGG + chr5_1:12225797-12225816 Msa0718070:CDS 45.0%
!!! TTTTGGAGAACAAAGGCGTC+GGG + chr5_1:12225804-12225823 Msa0718070:CDS 45.0%
TAGATGCATCTTCTCCAACC+AGG + chr5_1:12226082-12226101 Msa0718070:CDS 45.0%
AGTTCAACAGGGACTTTACC+AGG + chr5_1:12226162-12226181 Msa0718070:CDS 45.0%
! CGTTTGAAATGCGAACTGCA+AGG + chr5_1:12226225-12226244 Msa0718070:CDS 45.0%
CTGATAAATTCGGGGACACT+TGG - chr5_1:12226447-12226466 None:intergenic 45.0%
TTGGAGACAACAACTCTCTG+TGG - chr5_1:12226671-12226690 None:intergenic 45.0%
ACAGAGAGTTGTTGTCTCCA+AGG + chr5_1:12226670-12226689 Msa0718070:CDS 45.0%
GAGCAGACAAGGATCTTACA+AGG - chr5_1:12226698-12226717 None:intergenic 45.0%
TCTTGATACAGGAGCAGACA+AGG - chr5_1:12226709-12226728 None:intergenic 45.0%
TCTGCTCCTGTATCAAGATC+AGG + chr5_1:12226711-12226730 Msa0718070:CDS 45.0%
GAAAGCTTCTACTAGAGGAC+CGG + chr5_1:12226745-12226764 Msa0718070:CDS 45.0%
! TTTTAACCGGGGCTCATATC+CGG + chr5_1:12226772-12226791 Msa0718070:CDS 45.0%
!!! ACAGTTTTGCTCTAAGAGGG+AGG + chr5_1:12226892-12226911 Msa0718070:CDS 45.0%
!!! GCTCTAAGAGGGAGGATTTT+TGG + chr5_1:12226900-12226919 Msa0718070:CDS 45.0%
CCGTCGTTCATAAGAACTGT+TGG - chr5_1:12226999-12227018 None:intergenic 45.0%
ACAGTTCTTATGAACGACGG+TGG + chr5_1:12226999-12227018 Msa0718070:intron 45.0%
TGCAGAAGTGAGGGTTGAAA+AGG - chr5_1:12227067-12227086 None:intergenic 45.0%
CGAATTCTTCTGCAGAAGTG+AGG - chr5_1:12227077-12227096 None:intergenic 45.0%
TCGTCTCTTGAGGACAAATC+AGG - chr5_1:12227517-12227536 None:intergenic 45.0%
! GTTTTCAGAGACATCAGCTC+TGG + chr5_1:12227553-12227572 Msa0718070:CDS 45.0%
! GACATCAGCTCTGGTTTAAC+TGG + chr5_1:12227562-12227581 Msa0718070:CDS 45.0%
ATTCAGACTCAGACGGTTTC+TGG - chr5_1:12227837-12227856 None:intergenic 45.0%
GAAACCGTCTGAGTCTGAAT+TGG + chr5_1:12227837-12227856 Msa0718070:CDS 45.0%
TGCACCAATTCAGACTCAGA+CGG - chr5_1:12227844-12227863 None:intergenic 45.0%
AACAGTTCCTTTCCTTGAGG+CGG - chr5_1:12228183-12228202 None:intergenic 45.0%
TTGAGTTCAATCCCTTGGTC+TGG + chr5_1:12228291-12228310 Msa0718070:CDS 45.0%
TTCCATACATTGGTGGAGCA+AGG + chr5_1:12228446-12228465 Msa0718070:three_prime_UTR 45.0%
TCCATACATTGGTGGAGCAA+GGG + chr5_1:12228447-12228466 Msa0718070:three_prime_UTR 45.0%
TGTGTGAGTGTGTGTGATGT+AGG + chr5_1:12228568-12228587 Msa0718070:three_prime_UTR 45.0%
GTGTGAGTGTGTGTGATGTA+GGG + chr5_1:12228569-12228588 Msa0718070:three_prime_UTR 45.0%
TGTGAGTGTGTGTGATGTAG+GGG + chr5_1:12228570-12228589 Msa0718070:three_prime_UTR 45.0%
!! ATGTAGGGGGTATTGAGTTG+TGG + chr5_1:12228584-12228603 Msa0718070:three_prime_UTR 45.0%
GGAACAGGCTACGAGGTTAA+GGG - chr5_1:12223293-12223312 None:intergenic 50.0%
AGGAACAGGCTACGAGGTTA+AGG - chr5_1:12223294-12223313 None:intergenic 50.0%
GAAAGACCCCTCAAGGTTGT+AGG + chr5_1:12225216-12225235 Msa0718070:intron 50.0%
TTGCCGTGTGCTTGATCGAT+TGG - chr5_1:12225542-12225561 None:intergenic 50.0%
GCAATATGCACCAAGCCTTG+TGG + chr5_1:12225558-12225577 Msa0718070:CDS 50.0%
ATCAACCTTGCCACAAGGCT+TGG - chr5_1:12225571-12225590 None:intergenic 50.0%
! AAGCCTTGTGGCAAGGTTGA+TGG + chr5_1:12225570-12225589 Msa0718070:CDS 50.0%
! AGCCTTGTGGCAAGGTTGAT+GGG + chr5_1:12225571-12225590 Msa0718070:CDS 50.0%
!! ATGACGGCGATGATGATGGA+TGG + chr5_1:12225773-12225792 Msa0718070:CDS 50.0%
! GATGGATGGAGCCGGAATTT+TGG + chr5_1:12225787-12225806 Msa0718070:CDS 50.0%
TCGGGAACATCCACAGGAAA+AGG + chr5_1:12225822-12225841 Msa0718070:CDS 50.0%
GGAAAAGGTTATGTGGTCCG+AGG + chr5_1:12226258-12226277 Msa0718070:CDS 50.0%
!! GAGGACCGGCACATTTTAAC+CGG + chr5_1:12226759-12226778 Msa0718070:CDS 50.0%
!! AGGACCGGCACATTTTAACC+GGG + chr5_1:12226760-12226779 Msa0718070:CDS 50.0%
TATCCGGAGGAAGCTTGAAG+CGG + chr5_1:12226788-12226807 Msa0718070:CDS 50.0%
ACCCTTGCTCCACCAATGTA+TGG - chr5_1:12228451-12228470 None:intergenic 50.0%
GTGAGTGTGTGTGATGTAGG+GGG + chr5_1:12228571-12228590 Msa0718070:three_prime_UTR 50.0%
TGACAGAGGAACAGGCTACG+AGG - chr5_1:12223300-12223319 None:intergenic 55.0%
! TCTCAGAAGTACGGCCCAGA+AGG + chr5_1:12224952-12224971 Msa0718070:intron 55.0%
CGGCCCAGAAGGAGAATTAC+CGG + chr5_1:12224963-12224982 Msa0718070:intron 55.0%
! ATGCACCAAGCCTTGTGGCA+AGG + chr5_1:12225563-12225582 Msa0718070:CDS 55.0%
!! GCCTTGTGGCAAGGTTGATG+GGG + chr5_1:12225572-12225591 Msa0718070:CDS 55.0%
ACCCCATCAACCTTGCCACA+AGG - chr5_1:12225576-12225595 None:intergenic 55.0%
!! GCGATGATGATGGATGGAGC+CGG + chr5_1:12225779-12225798 Msa0718070:CDS 55.0%
!! GGACCGGCACATTTTAACCG+GGG + chr5_1:12226761-12226780 Msa0718070:CDS 55.0%
GAGCCCCGGTTAAAATGTGC+CGG - chr5_1:12226767-12226786 None:intergenic 55.0%
CAACCGCTTCAAGCTTCCTC+CGG - chr5_1:12226794-12226813 None:intergenic 55.0%
CTGCACACAGATGCAGGACT+CGG - chr5_1:12227439-12227458 None:intergenic 55.0%
ACACTGCTGCACACAGATGC+AGG - chr5_1:12227445-12227464 None:intergenic 55.0%
CACAGCAGTCTCGTCTCTTG+AGG - chr5_1:12227527-12227546 None:intergenic 55.0%
!! AAGGCGTCGGGAACATCCAC+AGG + chr5_1:12225816-12225835 Msa0718070:CDS 60.0%
TAACCGGGGCTCATATCCGG+AGG + chr5_1:12226775-12226794 Msa0718070:CDS 60.0%
CTTCCTCCGGATATGAGCCC+CGG - chr5_1:12226781-12226800 None:intergenic 60.0%
CACACAGATGCAGGACTCGG+AGG - chr5_1:12227436-12227455 None:intergenic 60.0%
TCCATGTTGTCGCCGCCTCA+AGG + chr5_1:12228168-12228187 Msa0718070:CDS 60.0%
TCCTTGAGGCGGCGACAACA+TGG - chr5_1:12228172-12228191 None:intergenic 60.0%
GTTGTCGCCGCCTCAAGGAA+AGG + chr5_1:12228173-12228192 Msa0718070:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 12223272 12228779 12223272 ID=Msa0718070;Name=Msa0718070
chr5_1 mRNA 12223272 12228779 12223272 ID=Msa0718070-mRNA-1;Parent=Msa0718070;Name=Msa0718070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=415|0.6|0.83|1|0.4|0.33|6|372|786
chr5_1 exon 12223272 12223350 12223272 ID=Msa0718070-mRNA-1:exon:4965;Parent=Msa0718070-mRNA-1
chr5_1 exon 12223612 12223842 12223612 ID=Msa0718070-mRNA-1:exon:4966;Parent=Msa0718070-mRNA-1
chr5_1 exon 12224485 12224671 12224485 ID=Msa0718070-mRNA-1:exon:4967;Parent=Msa0718070-mRNA-1
chr5_1 exon 12225464 12226941 12225464 ID=Msa0718070-mRNA-1:exon:4968;Parent=Msa0718070-mRNA-1
chr5_1 exon 12227415 12227583 12227415 ID=Msa0718070-mRNA-1:exon:4969;Parent=Msa0718070-mRNA-1
chr5_1 exon 12227776 12228779 12227776 ID=Msa0718070-mRNA-1:exon:4970;Parent=Msa0718070-mRNA-1
chr5_1 five_prime_UTR 12223272 12223350 12223272 ID=Msa0718070-mRNA-1:five_prime_utr;Parent=Msa0718070-mRNA-1
chr5_1 five_prime_UTR 12223612 12223842 12223612 ID=Msa0718070-mRNA-1:five_prime_utr;Parent=Msa0718070-mRNA-1
chr5_1 five_prime_UTR 12224485 12224589 12224485 ID=Msa0718070-mRNA-1:five_prime_utr;Parent=Msa0718070-mRNA-1
chr5_1 CDS 12224590 12224671 12224590 ID=Msa0718070-mRNA-1:cds;Parent=Msa0718070-mRNA-1
chr5_1 CDS 12225464 12226941 12225464 ID=Msa0718070-mRNA-1:cds;Parent=Msa0718070-mRNA-1
chr5_1 CDS 12227415 12227583 12227415 ID=Msa0718070-mRNA-1:cds;Parent=Msa0718070-mRNA-1
chr5_1 CDS 12227776 12228407 12227776 ID=Msa0718070-mRNA-1:cds;Parent=Msa0718070-mRNA-1
chr5_1 three_prime_UTR 12228408 12228779 12228408 ID=Msa0718070-mRNA-1:three_prime_utr;Parent=Msa0718070-mRNA-1
Gene Sequence

>Msa0718070

ATGGGAGGGTTATTACACTTTTCTGAATTCAATCAAGGGAGGATGGCCAAGAAAGTCCATGCTCACAAGAGACATCATAGTGTAGAAGAAGACTGGTCTGAAAATAATTGTTATTCAAACGCTGGTTCAATGAAAAAGCTGATCAATGAAGAAATATCCAATCGATCAAGCACACGGCAATATGCACCAAGCCTTGTGGCAAGGTTGATGGGGTTAGATATGATGCCTGTAGACACTAAACCTGTTGCTCCATCAGATAAAAGAATAAGTGAAAATATGGGGAAGAAGTTTTCAAACAAGGGAACAAATGGAAGGAGTTCAGTTAGTTGGGAATCTTCTAACTTTAATTCTTCTAGCCATATTGAATTCGATTCATTTCACAAAGTTAAAGATGACGGCGATGATGATGGATGGAGCCGGAATTTTGGAGAACAAAGGCGTCGGGAACATCCACAGGAAAAGGAACTTCAGAAATTCAAGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCAGGAATGTTCAAAGTTTGCCGAAATCGGAAGTGTTTCTAGCAGATTGATTTTTCAAGAGAATCTGAACAGCGAAAAGGTTGCACTTGCACATAATACAAGTATGCAAAGGAAAATATTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAAGAGTCCTTAATGATCAAATCTTATAACAGATTAGATGCATCTTCTCCAACCAGGATCGTTATCTTGAAACCTGGTCCTGATTGCATATTCAATCATGAAGAGAATTGGACTAGTTCAACAGGGACTTTACCAGGTAGACATAGTATAGAAGATTTTCTTGAGGAGGTGAAAGAGCGTTTGAAATGCGAACTGCAAGGAAAAACTGTCGGAAAAGGTTATGTGGTCCGAGGAAGTGATATTGAGACACTATGCAATAAAAAACCATCTGATCCTAAACTTATTGCTCGTCAAATAGTAAAGCAAGTCAAAGAAAATGTGACTAGAGATACCGACTCAAATTCAGTCTGCTCAGAATCAACAAGATCATACGAAGGTGAAGGACAATTCAATGAACCAAGTGTCCCCGAATTTATCAGTAGAGATTCAAGGAGTTACTTGTCAGAGAAGCTAACAGATGTTGTAAAAAGTGAAAGACATGATACATTTGACAATCACAGATTTAGACTCAAGAAGAGAGAAGATATTTTGAAATGTGCAGATGAATGGGAAATATCGAAAGAAGAAACAGAAATACAAACAGGATCTTTCAGGCATGAACAAGACAACAACATATTGTTCCACAGAGAGTTGTTGTCTCCAAGGAACCTTGTAAGATCCTTGTCTGCTCCTGTATCAAGATCAGGAACATCATTTGGAAAGCTTCTACTAGAGGACCGGCACATTTTAACCGGGGCTCATATCCGGAGGAAGCTTGAAGCGGTTGAAACTATGTCTCTTGATGTTAAAAAACAGAAAAAAGAGAGATTTAATAATATTAAAGAAAAAGTTTCCAATTTGAGTTACAGTTTTGCTCTAAGAGGGAGGATTTTTGGTAAGAGAAATCAATCAATGGAGAACTACACTGAGGTACCTCCGAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGACTTTTGGAGGCGAACTGAATATTTAAGTCCAGTATCAACTCCTGATTTGTCCTCAAGAGACGAGACTGCTGTGCCACAAGTTTTCAGAGACATCAGCTCTGGTTTAACTGAGCTAAGGAGACAACTCAATCAACTTGATTCTAGTGATGTCGAGGACTTCACTACGAACCAGAAACCGTCTGAGTCTGAATTGGTGCAAATAAATGATCCAGCAGAATCTTACATAAGAGATTTACTTGTTGCTTCTGGTTTATACTTTGGTTCTTGGAATAAGTCTTTGTTAAGAGGGGATACATATGCAAAGCCTATTGGAAATTCTGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTGATCAAGAATGATGAAAATTCTATGAAGGATCAAAGCGAGAACAAATTAGACCACAAGATTTTGCTTGATTTGTTAAATGAATCACTTTCAGTTGTTCTTGGACCACCTTTGACACTGTCTAGATTCAGAAAAAAACTATGCAACTCTTCCATGTTGTCGCCGCCTCAAGGAAAGGAACTGTTGAAGTTAGTATGGGAAAATATCCGTGTTTCGTTATATCCTTCACCGGATATGTCTCTTTATTCACTTGATAATTTGGTAGCTCAACATTTGAGTTCAATCCCTTGGTCTGGAATAATCAATGAAGAGATCAATATATTGGAAAGAGAGGTAGAATGTCTTATAACTAATGATCTTGTTGAAGAACTCACAAAGGATTTGCTCTGA
Protein sequence

>Msa0718070

MGGLLHFSEFNQGRMAKKVHAHKRHHSVEEDWSENNCYSNAGSMKKLINEEISNRSSTRQYAPSLVARLMGLDMMPVDTKPVAPSDKRISENMGKKFSNKGTNGRSSVSWESSNFNSSSHIEFDSFHKVKDDGDDDGWSRNFGEQRRREHPQEKELQKFKKEFEAYQAARFQECSKFAEIGSVSSRLIFQENLNSEKVALAHNTSMQRKIFPSKSRTLSRDFEESLMIKSYNRLDASSPTRIVILKPGPDCIFNHEENWTSSTGTLPGRHSIEDFLEEVKERLKCELQGKTVGKGYVVRGSDIETLCNKKPSDPKLIARQIVKQVKENVTRDTDSNSVCSESTRSYEGEGQFNEPSVPEFISRDSRSYLSEKLTDVVKSERHDTFDNHRFRLKKREDILKCADEWEISKEETEIQTGSFRHEQDNNILFHRELLSPRNLVRSLSAPVSRSGTSFGKLLLEDRHILTGAHIRRKLEAVETMSLDVKKQKKERFNNIKEKVSNLSYSFALRGRIFGKRNQSMENYTEVPPSPASVCSSVHEDFWRRTEYLSPVSTPDLSSRDETAVPQVFRDISSGLTELRRQLNQLDSSDVEDFTTNQKPSESELVQINDPAESYIRDLLVASGLYFGSWNKSLLRGDTYAKPIGNSVFEEVEESHKKLIKNDENSMKDQSENKLDHKILLDLLNESLSVVLGPPLTLSRFRKKLCNSSMLSPPQGKELLKLVWENIRVSLYPSPDMSLYSLDNLVAQHLSSIPWSGIINEEINILEREVECLITNDLVEELTKDLL*