AlfalfaGEDB | Msa0755760

M. sativa cultivar zhongmu-4 / Msa0755760

KEGG: K10436
GO: GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
PFAM: PF00307.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755760	sp\|Q9FGQ6\|EB1C_ARATH	61.383	347	98	10	1	331	1	327	3.48e-139	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755760	G7K588	94.294	333	18	1	1	332	1	333	0.0	611

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0755760	0.805395	1.363070e-49	-8.615850e-47
Msa0005890	Msa0755760	0.801895	7.256061e-49	-8.615850e-47
Msa0016040	Msa0755760	0.837820	4.147664e-57	-8.615850e-47
Msa0020540	Msa0755760	0.808863	2.512729e-50	-8.615850e-47
Msa0032980	Msa0755760	0.810084	1.373976e-50	-8.615850e-47
Msa0035140	Msa0755760	0.819889	9.160760e-53	-8.615850e-47
Msa0038940	Msa0755760	0.846242	2.456356e-59	-8.615850e-47
Msa0048510	Msa0755760	0.839748	1.316484e-57	-8.615850e-47
Msa0053070	Msa0755760	0.828182	1.036546e-54	-8.615850e-47
Msa0056180	Msa0755760	0.828298	9.715816e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755760	MtrunA17_Chr5g0401741	94.294	333	18	1	1	332	1	333	0.0	611
Msa0755760	MtrunA17_Chr3g0092651	58.304	283	94	6	1	275	1	267	8.50e-112	325
Msa0755760	MtrunA17_Chr4g0060561	58.333	276	88	5	1	267	1	258	2.14e-107	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755760	AT5G67270.1	61.383	347	98	10	1	331	1	327	3.54e-140	400
Msa0755760	AT3G47690.1	57.509	273	96	4	1	271	1	255	5.08e-110	322
Msa0755760	AT5G62500.1	57.401	277	97	5	1	271	1	262	7.17e-108	317

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Find 84 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTTGCCAACCCTG+AGG	0.702193	5_2:-9581167	Msa0755760:CDS
AACCCTGAGGTTGATGCTGC+TGG	0.418093	5_2:-9581154	Msa0755760:CDS
AATCTTCCCACACTGCTCGA+AGG	0.610802	5_2:-9581746	Msa0755760:CDS
AATTGGAACCTCTTCGACTT+TGG	0.334561	5_2:+9583030	None:intergenic
ACACTCTCAACCCTCAAACA+AGG	0.557498	5_2:-9581796	Msa0755760:CDS
ACATCAGAAAGCCTTCGTCT+AGG	0.591311	5_2:+9581115	None:intergenic
ACCGGTGAATGTTCTACTTC+AGG	0.375265	5_2:+9581441	None:intergenic
ACCTCAGCAATGGGGCTCAA+TGG	0.463460	5_2:+9581226	None:intergenic
AGAGACTTATGTTATGAATA+TGG	0.275535	5_2:-9580958	Msa0755760:three_prime_UTR
AGAGAGATGTGCAGGGGAGG+AGG	0.387265	5_2:-9581843	Msa0755760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATTGAATCGGAGAAAT+TGG	+	chr5_2:9580985-9581004	None:intergenic	30.0%
TAGAAATTCACCTTATGCAT+CGG	+	chr5_2:9581127-9581146	None:intergenic	30.0%
CAACAAACTCAAAATCACTA+AGG	-	chr5_2:9581201-9581220	Msa0755760:CDS	30.0%
TACTGTGATTCTGTTAATTC+TGG	-	chr5_2:9581401-9581420	Msa0755760:intron	30.0%
AAGTTACTGAATGTTGAACA+AGG	-	chr5_2:9581703-9581722	Msa0755760:CDS	30.0%
TCGTTTCAGTTATAATCCTT+TGG	-	chr5_2:9582124-9582143	Msa0755760:intron	30.0%
ACTTAAGGTGATACAGATAA+CGG	-	chr5_2:9582445-9582464	Msa0755760:intron	30.0%
AGAGTTTACAAGCAAAATAC+CGG	+	chr5_2:9582575-9582594	None:intergenic	30.0%
TGATCTGAAGGAAAAATTAG+AGG	-	chr5_2:9582935-9582954	Msa0755760:intron	30.0%
GAAAATTGAATCGGAGAAAT+TGG	+	chr5_2:9580985-9581004	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	9580794	9583223	9580794	ID=Msa0755760;Name=Msa0755760
chr5_2	mRNA	9580794	9583223	9580794	ID=Msa0755760-mRNA-1;Parent=Msa0755760;Name=Msa0755760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=77\|1\|1\|1\|0.83\|0.71\|7\|261\|332
chr5_2	exon	9580794	9580978	9580794	ID=Msa0755760-mRNA-1:exon:4443;Parent=Msa0755760-mRNA-1
chr5_2	exon	9580999	9581350	9580999	ID=Msa0755760-mRNA-1:exon:4442;Parent=Msa0755760-mRNA-1
chr5_2	exon	9581443	9581556	9581443	ID=Msa0755760-mRNA-1:exon:4441;Parent=Msa0755760-mRNA-1
chr5_2	exon	9581644	9581884	9581644	ID=Msa0755760-mRNA-1:exon:4440;Parent=Msa0755760-mRNA-1
chr5_2	exon	9582585	9582688	9582585	ID=Msa0755760-mRNA-1:exon:4439;Parent=Msa0755760-mRNA-1
chr5_2	exon	9582795	9582950	9582795	ID=Msa0755760-mRNA-1:exon:4438;Parent=Msa0755760-mRNA-1
chr5_2	exon	9583039	9583223	9583039	ID=Msa0755760-mRNA-1:exon:4437;Parent=Msa0755760-mRNA-1
chr5_2	five_prime_UTR	9583147	9583223	9583147	ID=Msa0755760-mRNA-1:five_prime_utr;Parent=Msa0755760-mRNA-1
chr5_2	CDS	9583039	9583146	9583039	ID=Msa0755760-mRNA-1:cds;Parent=Msa0755760-mRNA-1
chr5_2	CDS	9582795	9582950	9582795	ID=Msa0755760-mRNA-1:cds;Parent=Msa0755760-mRNA-1
chr5_2	CDS	9582585	9582688	9582585	ID=Msa0755760-mRNA-1:cds;Parent=Msa0755760-mRNA-1
chr5_2	CDS	9581644	9581884	9581644	ID=Msa0755760-mRNA-1:cds;Parent=Msa0755760-mRNA-1
chr5_2	CDS	9581443	9581556	9581443	ID=Msa0755760-mRNA-1:cds;Parent=Msa0755760-mRNA-1
chr5_2	CDS	9581075	9581350	9581075	ID=Msa0755760-mRNA-1:cds;Parent=Msa0755760-mRNA-1
chr5_2	three_prime_UTR	9580999	9581074	9580999	ID=Msa0755760-mRNA-1:three_prime_utr;Parent=Msa0755760-mRNA-1
chr5_2	three_prime_UTR	9580794	9580978	9580794	ID=Msa0755760-mRNA-1:three_prime_utr;Parent=Msa0755760-mRNA-1

Gene Sequence

>Msa0755760

ATGGCGACGAACATTGGAATAATGGACACTGCATACTTCGTCGGTAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCTATGCGAAGAATGAGTATGAGATGATTCAGAATTATAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCCACTGTTGCTGCAGCTCCTGCATATGATCAACAGATAACGGAATTGAAGCTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGATCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA

Protein sequence

>Msa0755760

MATNIGIMDTAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFYAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVATVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTADLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI*