Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154100 | XP_013449250.1 | 87.383 | 214 | 19 | 4 | 1 | 207 | 1 | 213 | 5.96e-110 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154100 | A0A072U0R7 | 87.383 | 214 | 19 | 4 | 1 | 207 | 1 | 213 | 2.85e-110 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa1154100 | 0.816205 | 6.234202e-52 | -8.615850e-47 |
| Msa0016040 | Msa1154100 | 0.819110 | 1.379435e-52 | -8.615850e-47 |
| Msa0025160 | Msa1154100 | 0.802321 | 5.929514e-49 | -8.615850e-47 |
| Msa0025580 | Msa1154100 | 0.817393 | 3.374989e-52 | -8.615850e-47 |
| Msa0027280 | Msa1154100 | 0.808162 | 3.545672e-50 | -8.615850e-47 |
| Msa0035380 | Msa1154100 | 0.803984 | 2.684733e-49 | -8.615850e-47 |
| Msa0048510 | Msa1154100 | 0.812948 | 3.278335e-51 | -8.615850e-47 |
| Msa0056180 | Msa1154100 | 0.806257 | 8.982274e-50 | -8.615850e-47 |
| Msa0067330 | Msa1154100 | 0.819902 | 9.100943e-53 | -8.615850e-47 |
| Msa0073120 | Msa1154100 | 0.848504 | 5.875809e-60 | -8.615850e-47 |
| Msa0075530 | Msa1154100 | 0.807418 | 5.104945e-50 | -8.615850e-47 |
| Msa0077560 | Msa1154100 | 0.817087 | 3.956067e-52 | -8.615850e-47 |
| Msa0081980 | Msa1154100 | 0.801467 | 8.879960e-49 | -8.615850e-47 |
| Msa0094790 | Msa1154100 | 0.801540 | 8.578873e-49 | -8.615850e-47 |
| Msa0603980 | Msa1154100 | 0.802749 | 4.840638e-49 | -8.615850e-47 |
| Msa0606100 | Msa1154100 | 0.838202 | 3.307075e-57 | -8.615850e-47 |
| Msa0608330 | Msa1154100 | 0.801082 | 1.064970e-48 | -8.615850e-47 |
| Msa0621710 | Msa1154100 | 0.831067 | 2.059876e-55 | -8.615850e-47 |
| Msa0657700 | Msa1154100 | 0.826758 | 2.275979e-54 | -8.615850e-47 |
| Msa0658640 | Msa1154100 | 0.820521 | 6.564654e-53 | -8.615850e-47 |
| Msa0666700 | Msa1154100 | 0.856763 | 2.581043e-62 | -8.615850e-47 |
| Msa0668900 | Msa1154100 | 0.812452 | 4.209178e-51 | -8.615850e-47 |
| Msa0687090 | Msa1154100 | 0.800959 | 1.128338e-48 | -8.615850e-47 |
| Msa0699540 | Msa1154100 | 0.800221 | 1.595643e-48 | -8.615850e-47 |
| Msa0702810 | Msa1154100 | 0.829359 | 5.380992e-55 | -8.615850e-47 |
| Msa0703600 | Msa1154100 | 0.840815 | 6.928315e-58 | -8.615850e-47 |
| Msa0706150 | Msa1154100 | 0.800065 | 1.716745e-48 | -8.615850e-47 |
| Msa0709200 | Msa1154100 | 0.842042 | 3.291977e-58 | -8.615850e-47 |
| Msa0709440 | Msa1154100 | 0.822760 | 1.993142e-53 | -8.615850e-47 |
| Msa0714790 | Msa1154100 | 0.804650 | 1.950891e-49 | -8.615850e-47 |
| Msa0735780 | Msa1154100 | 0.822244 | 2.628360e-53 | -8.615850e-47 |
| Msa0740710 | Msa1154100 | 0.821323 | 4.292722e-53 | -8.615850e-47 |
| Msa0747740 | Msa1154100 | 0.803748 | 3.006735e-49 | -8.615850e-47 |
| Msa0755760 | Msa1154100 | 0.847161 | 1.377233e-59 | -8.615850e-47 |
| Msa0756590 | Msa1154100 | 0.803553 | 3.300334e-49 | -8.615850e-47 |
| Msa0756820 | Msa1154100 | 0.800370 | 1.488162e-48 | -8.615850e-47 |
| Msa0773630 | Msa1154100 | 0.837669 | 4.534651e-57 | -8.615850e-47 |
| Msa0777750 | Msa1154100 | 0.809296 | 2.030119e-50 | -8.615850e-47 |
| Msa0778550 | Msa1154100 | 0.824587 | 7.444437e-54 | -8.615850e-47 |
| Msa0778600 | Msa1154100 | 0.810127 | 1.345402e-50 | -8.615850e-47 |
| Msa0780910 | Msa1154100 | 0.821069 | 4.912452e-53 | -8.615850e-47 |
| Msa0795870 | Msa1154100 | 0.804486 | 2.111282e-49 | -8.615850e-47 |
| Msa0811020 | Msa1154100 | 0.828306 | 9.675118e-55 | -8.615850e-47 |
| Msa0815920 | Msa1154100 | 0.804565 | 2.032301e-49 | -8.615850e-47 |
| Msa0821160 | Msa1154100 | 0.814259 | 1.687159e-51 | -8.615850e-47 |
| Msa0824450 | Msa1154100 | 0.806408 | 8.347660e-50 | -8.615850e-47 |
| Msa0828970 | Msa1154100 | 0.831008 | 2.128853e-55 | -8.615850e-47 |
| Msa0833650 | Msa1154100 | 0.813214 | 2.867301e-51 | -8.615850e-47 |
| Msa0835900 | Msa1154100 | 0.816693 | 4.847329e-52 | -8.615850e-47 |
| Msa0121330 | Msa1154100 | 0.805786 | 1.128309e-49 | -8.615850e-47 |
| Msa0123070 | Msa1154100 | 0.836008 | 1.203684e-56 | -8.615850e-47 |
| Msa0140380 | Msa1154100 | 0.805507 | 1.291226e-49 | -8.615850e-47 |
| Msa0141640 | Msa1154100 | 0.810842 | 9.426887e-51 | -8.615850e-47 |
| Msa0143670 | Msa1154100 | 0.817891 | 2.606412e-52 | -8.615850e-47 |
| Msa0146650 | Msa1154100 | 0.811380 | 7.205675e-51 | -8.615850e-47 |
| Msa0159590 | Msa1154100 | 0.803003 | 4.289639e-49 | -8.615850e-47 |
| Msa0174290 | Msa1154100 | 0.815699 | 8.088669e-52 | -8.615850e-47 |
| Msa0200050 | Msa1154100 | 0.815193 | 1.048117e-51 | -8.615850e-47 |
| Msa0213030 | Msa1154100 | 0.802350 | 5.849569e-49 | -8.615850e-47 |
| Msa0367150 | Msa1154100 | 0.802412 | 5.680880e-49 | -8.615850e-47 |
| Msa0367520 | Msa1154100 | 0.808796 | 2.597288e-50 | -8.615850e-47 |
| Msa0369790 | Msa1154100 | 0.800230 | 1.588864e-48 | -8.615850e-47 |
| Msa0381730 | Msa1154100 | 0.801921 | 7.168048e-49 | -8.615850e-47 |
| Msa0383000 | Msa1154100 | 0.818658 | 1.747284e-52 | -8.615850e-47 |
| Msa0405620 | Msa1154100 | 0.806726 | 7.149813e-50 | -8.615850e-47 |
| Msa0433150 | Msa1154100 | 0.814518 | 1.478868e-51 | -8.615850e-47 |
| Msa0436330 | Msa1154100 | 0.804516 | 2.080284e-49 | -8.615850e-47 |
| Msa0462780 | Msa1154100 | 0.813422 | 2.580233e-51 | -8.615850e-47 |
| Msa0464000 | Msa1154100 | 0.800957 | 1.129639e-48 | -8.615850e-47 |
| Msa0481890 | Msa1154100 | 0.821705 | 3.503106e-53 | -8.615850e-47 |
| Msa0997920 | Msa1154100 | 0.820981 | 5.145662e-53 | -8.615850e-47 |
| Msa1009950 | Msa1154100 | 0.808052 | 3.742170e-50 | -8.615850e-47 |
| Msa1035570 | Msa1154100 | 0.806583 | 7.665131e-50 | -8.615850e-47 |
| Msa1035610 | Msa1154100 | 0.822918 | 1.831269e-53 | -8.615850e-47 |
| Msa1037540 | Msa1154100 | 0.803206 | 3.893560e-49 | -8.615850e-47 |
| Msa1042160 | Msa1154100 | 0.817070 | 3.989542e-52 | -8.615850e-47 |
| Msa1042190 | Msa1154100 | 0.821452 | 4.008028e-53 | -8.615850e-47 |
| Msa1051420 | Msa1154100 | 0.821879 | 3.192481e-53 | -8.615850e-47 |
| Msa1077990 | Msa1154100 | 0.802161 | 6.396444e-49 | -8.615850e-47 |
| Msa1078880 | Msa1154100 | 0.815494 | 8.982449e-52 | -8.615850e-47 |
| Msa1078970 | Msa1154100 | 0.816861 | 4.445319e-52 | -8.615850e-47 |
| Msa1082200 | Msa1154100 | 0.807516 | 4.866443e-50 | -8.615850e-47 |
| Msa1084530 | Msa1154100 | 0.820373 | 7.099969e-53 | -8.615850e-47 |
| Msa0242590 | Msa1154100 | 0.824028 | 1.007808e-53 | -8.615850e-47 |
| Msa0260510 | Msa1154100 | 0.812422 | 4.274240e-51 | -8.615850e-47 |
| Msa0269210 | Msa1154100 | 0.812052 | 5.147971e-51 | -8.615850e-47 |
| Msa0280790 | Msa1154100 | 0.822567 | 2.210603e-53 | -8.615850e-47 |
| Msa0298470 | Msa1154100 | 0.809101 | 2.234346e-50 | -8.615850e-47 |
| Msa0343010 | Msa1154100 | 0.807577 | 4.722810e-50 | -8.615850e-47 |
| Msa1116220 | Msa1154100 | 0.801088 | 1.062019e-48 | -8.615850e-47 |
| Msa1116660 | Msa1154100 | 0.814239 | 1.705076e-51 | -8.615850e-47 |
| Msa1125820 | Msa1154100 | 0.822800 | 1.951711e-53 | -8.615850e-47 |
| Msa1125990 | Msa1154100 | 0.826685 | 2.368193e-54 | -8.615850e-47 |
| Msa1130420 | Msa1154100 | 0.815340 | 9.720480e-52 | -8.615850e-47 |
| Msa1132530 | Msa1154100 | 0.817794 | 2.741336e-52 | -8.615850e-47 |
| Msa1132840 | Msa1154100 | 0.805136 | 1.544377e-49 | -8.615850e-47 |
| Msa1154100 | Msa1167470 | 0.815130 | 1.082422e-51 | -8.615850e-47 |
| Msa1154100 | Msa1169190 | 0.804779 | 1.833966e-49 | -8.615850e-47 |
| Msa1154100 | Msa1171290 | 0.817301 | 3.540013e-52 | -8.615850e-47 |
| Msa1154100 | Msa1192570 | 0.809704 | 1.658891e-50 | -8.615850e-47 |
| Msa1154100 | Msa1218820 | 0.808488 | 3.021332e-50 | -8.615850e-47 |
| Msa1154100 | Msa1226520 | 0.826395 | 2.778025e-54 | -8.615850e-47 |
| Msa1154100 | Msa1244240 | 0.822210 | 2.675370e-53 | -8.615850e-47 |
| Msa1154100 | Msa1254540 | 0.818541 | 1.857819e-52 | -8.615850e-47 |
| Msa1154100 | Msa1260710 | 0.811836 | 5.735462e-51 | -8.615850e-47 |
| Msa1154100 | Msa1263740 | 0.830105 | 3.541197e-55 | -8.615850e-47 |
| Msa1154100 | Msa1263780 | 0.861052 | 1.345389e-63 | -8.615850e-47 |
| Msa1154100 | Msa1339170 | 0.802386 | 5.749811e-49 | -8.615850e-47 |
| Msa1154100 | Msa1343180 | 0.803988 | 2.680329e-49 | -8.615850e-47 |
| Msa1154100 | Msa1359690 | 0.808216 | 3.453402e-50 | -8.615850e-47 |
| Msa1154100 | Msa1359980 | 0.804864 | 1.760021e-49 | -8.615850e-47 |
| Msa1154100 | Msa1364410 | 0.833922 | 4.036494e-56 | -8.615850e-47 |
| Msa1154100 | Msa1380120 | 0.805236 | 1.471769e-49 | -8.615850e-47 |
| Msa1154100 | Msa1387440 | 0.801811 | 7.550921e-49 | -8.615850e-47 |
| Msa1154100 | Msa1397400 | 0.804771 | 1.841202e-49 | -8.615850e-47 |
| Msa1154100 | Msa1406720 | 0.800645 | 1.307914e-48 | -8.615850e-47 |
| Msa1154100 | Msa1409410 | 0.841491 | 4.600379e-58 | -8.615850e-47 |
| Msa1154100 | Msa1446100 | 0.807556 | 4.771557e-50 | -8.615850e-47 |
| Msa1154100 | Msa1447170 | 0.805918 | 1.058343e-49 | -8.615850e-47 |
| Msa1154100 | Msa1450190 | 0.824368 | 8.383213e-54 | -8.615850e-47 |
| Msa0524520 | Msa1154100 | 0.802315 | 5.946702e-49 | -8.615850e-47 |
| Msa0531960 | Msa1154100 | 0.814920 | 1.204978e-51 | -8.615850e-47 |
| Msa0532050 | Msa1154100 | 0.804073 | 2.573293e-49 | -8.615850e-47 |
| Msa0567170 | Msa1154100 | 0.857162 | 1.969850e-62 | -8.615850e-47 |
| Msa0580370 | Msa1154100 | 0.807176 | 5.744174e-50 | -8.615850e-47 |
| Msa0580810 | Msa1154100 | 0.828386 | 9.253565e-55 | -8.615850e-47 |
| Msa0588920 | Msa1154100 | 0.822412 | 2.402378e-53 | -8.615850e-47 |
| Msa0863620 | Msa1154100 | 0.811311 | 7.458590e-51 | -8.615850e-47 |
| Msa0878280 | Msa1154100 | 0.800460 | 1.426512e-48 | -8.615850e-47 |
| Msa0931590 | Msa1154100 | 0.820638 | 6.169432e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154100 | MtrunA17_Chr7g0245001 | 87.383 | 214 | 19 | 4 | 1 | 207 | 1 | 213 | 5.48e-114 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154100 | AT5G01910.1 | 49.635 | 137 | 54 | 3 | 19 | 152 | 4 | 128 | 8.38e-30 | 108 |
| Msa1154100 | AT5G01910.2 | 49.635 | 137 | 54 | 3 | 19 | 152 | 4 | 128 | 1.62e-29 | 107 |
Find 47 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATCGGCGGGAGTGTTTA+TGG | 0.245932 | 7_4:+41470217 | None:intergenic |
| AGATTAAGAAAGTACCGTTT+TGG | 0.310104 | 7_4:-41469454 | Msa1154100:three_prime_UTR |
| GAAAGGAGAAGTGAAAGAAT+TGG | 0.346121 | 7_4:+41470336 | None:intergenic |
| TTATGAAATTCAAATTCAAC+AGG | 0.363852 | 7_4:+41469384 | None:intergenic |
| CGATAGATTGTTCCGTTTGA+AGG | 0.364571 | 7_4:-41469922 | Msa1154100:CDS |
| TTGGAGAATGGTGAATAAAA+AGG | 0.365241 | 7_4:+41470355 | None:intergenic |
| TGCATAAGCTGTGCCATGTT+TGG | 0.401680 | 7_4:+41470299 | None:intergenic |
| GAAGGTGAAAACAGAGGAAA+TGG | 0.410284 | 7_4:-41469586 | Msa1154100:CDS |
| GAAACATAATTGATCGAGCT+TGG | 0.412716 | 7_4:+41470166 | None:intergenic |
| GAGCTTGGGTTTGTGCTTTG+TGG | 0.423141 | 7_4:+41470181 | None:intergenic |
| AAGCTGTGCCATGTTTGGTT+TGG | 0.436936 | 7_4:+41470304 | None:intergenic |
| GTGTCCGGCCAGAGCGTGGC+CGG | 0.445137 | 7_4:+41470249 | None:intergenic |
| AAACATAATTGATCGAGCTT+GGG | 0.455044 | 7_4:+41470167 | None:intergenic |
| TGGTTTGGTGTGGTTGAGAA+AGG | 0.456729 | 7_4:+41470319 | None:intergenic |
| AGATCGGCGGGAGTGTTTAT+GGG | 0.461473 | 7_4:+41470218 | None:intergenic |
| TCTGAAGTGCTTCAGAGTCC+TGG | 0.482019 | 7_4:-41469525 | Msa1154100:CDS |
| TATTCGAACCCTTAGAGAAA+AGG | 0.487625 | 7_4:-41469779 | Msa1154100:CDS |
| GTTGCTTGACGCGAAGATGA+AGG | 0.492065 | 7_4:-41469991 | Msa1154100:CDS |
| TCCGATCACCACTTCTCCAC+TGG | 0.492835 | 7_4:-41470114 | Msa1154100:CDS |
| GTTTGTGCTTTGTGGAAAGA+TGG | 0.506717 | 7_4:+41470189 | None:intergenic |
| GAAGTGAAAGAATTGGAGAA+TGG | 0.509909 | 7_4:+41470343 | None:intergenic |
| AGATGGTGAGTGAGATCGGC+GGG | 0.512562 | 7_4:+41470206 | None:intergenic |
| GATATTTGAGTTCCTTCAAA+CGG | 0.520675 | 7_4:+41469910 | None:intergenic |
| GACTGCGATGAAGAAGAAGC+TGG | 0.522184 | 7_4:-41470069 | Msa1154100:CDS |
| AAATCCGGCCACGCTCTGGC+CGG | 0.529930 | 7_4:-41470253 | Msa1154100:CDS |
| AACAGAGGAAATGGTTGAGT+CGG | 0.536566 | 7_4:-41469577 | Msa1154100:CDS |
| CAACCACACCAAACCAAACA+TGG | 0.541236 | 7_4:-41470312 | Msa1154100:exon |
| TTATGGGCTGAAGTGGTGTC+CGG | 0.550025 | 7_4:+41470234 | None:intergenic |
| TGACGCGAAGATGAAGGAGA+TGG | 0.559497 | 7_4:-41469985 | Msa1154100:CDS |
| AGTGGTGTCCGGCCAGAGCG+TGG | 0.560975 | 7_4:+41470245 | None:intergenic |
| GTGCCATGTTTGGTTTGGTG+TGG | 0.568892 | 7_4:+41470309 | None:intergenic |
| GTTTGTGAACAAGCTGAACC+AGG | 0.569366 | 7_4:+41469507 | None:intergenic |
| CGACGTCTCCAGTGGAGAAG+TGG | 0.569616 | 7_4:+41470106 | None:intergenic |
| ATAGAAAAGCTTCCCCAAAA+CGG | 0.576398 | 7_4:+41469440 | None:intergenic |
| ACTGGAGACGTCGCTTGCAG+AGG | 0.576756 | 7_4:-41470096 | Msa1154100:CDS |
| GGAGTGTTTATGGGCTGAAG+TGG | 0.581810 | 7_4:+41470227 | None:intergenic |
| GGAAAGATGGTGAGTGAGAT+CGG | 0.586737 | 7_4:+41470202 | None:intergenic |
| TCCAGTGGAGAAGTGGTGAT+CGG | 0.588457 | 7_4:+41470113 | None:intergenic |
| TCTGCAAGCGACGTCTCCAG+TGG | 0.592842 | 7_4:+41470098 | None:intergenic |
| CTTATGCAAACACCCGCCAC+CGG | 0.606622 | 7_4:-41470284 | Msa1154100:CDS |
| TTTCATACCTCTGATGTCGA+TGG | 0.613539 | 7_4:+41469727 | None:intergenic |
| CGAAATCACACCGATCCAGA+AGG | 0.617005 | 7_4:-41470144 | Msa1154100:CDS |
| GGAACTCAAATATCGATGCA+TGG | 0.636808 | 7_4:-41469901 | Msa1154100:intron |
| AACAGCACCATCGACATCAG+AGG | 0.666142 | 7_4:-41469734 | Msa1154100:intron |
| TGTTCAGAAGGTGAAAACAG+AGG | 0.670712 | 7_4:-41469592 | Msa1154100:intron |
| TATGAAATTCAAATTCAACA+GGG | 0.714468 | 7_4:+41469385 | None:intergenic |
| AAGATGGTGAGTGAGATCGG+CGG | 0.726270 | 7_4:+41470205 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACATAATTTTCTCGTTA+TGG | - | chr7_4:41470284-41470303 | Msa1154100:CDS | 20.0% |
| !! | TATGAAATTCAAATTCAACA+GGG | + | chr7_4:41470319-41470338 | None:intergenic | 20.0% |
| !! | TTATGAAATTCAAATTCAAC+AGG | + | chr7_4:41470320-41470339 | None:intergenic | 20.0% |
| !!! | ATTTTAAGAATGAATGAAAG+TGG | - | chr7_4:41470379-41470398 | Msa1154100:five_prime_UTR | 20.0% |
| !!! | TATACATAATTTTCTCGTTA+TGG | - | chr7_4:41470284-41470303 | Msa1154100:CDS | 20.0% |
| !! | TATGAAATTCAAATTCAACA+GGG | + | chr7_4:41470319-41470338 | None:intergenic | 20.0% |
| !! | TTATGAAATTCAAATTCAAC+AGG | + | chr7_4:41470320-41470339 | None:intergenic | 20.0% |
| !!! | ATTTTAAGAATGAATGAAAG+TGG | - | chr7_4:41470379-41470398 | Msa1154100:five_prime_UTR | 20.0% |
| ! | AACAACAACAACAAAAACAA+AGG | + | chr7_4:41470093-41470112 | None:intergenic | 25.0% |
| ! | AACAACAACAACAAAAACAA+AGG | + | chr7_4:41470093-41470112 | None:intergenic | 25.0% |
| TTGGAGAATGGTGAATAAAA+AGG | + | chr7_4:41469349-41469368 | None:intergenic | 30.0% | |
| AAACATAATTGATCGAGCTT+GGG | + | chr7_4:41469537-41469556 | None:intergenic | 30.0% | |
| ! | GATATTTGAGTTCCTTCAAA+CGG | + | chr7_4:41469794-41469813 | None:intergenic | 30.0% |
| AGAAACAAAACGAAACTGAA+TGG | + | chr7_4:41469859-41469878 | None:intergenic | 30.0% | |
| ! | TTCATGTTCCTTTTCTCTAA+GGG | + | chr7_4:41469933-41469952 | None:intergenic | 30.0% |
| ! | TTTCATGTTCCTTTTCTCTA+AGG | + | chr7_4:41469934-41469953 | None:intergenic | 30.0% |
| !!! | TTTTGTTGTTGTTGTTCAGA+AGG | - | chr7_4:41470097-41470116 | Msa1154100:CDS | 30.0% |
| !!! | AGATTAAGAAAGTACCGTTT+TGG | - | chr7_4:41470247-41470266 | Msa1154100:CDS | 30.0% |
| !!! | GATTAAGAAAGTACCGTTTT+GGG | - | chr7_4:41470248-41470267 | Msa1154100:CDS | 30.0% |
| !!! | ATTAAGAAAGTACCGTTTTG+GGG | - | chr7_4:41470249-41470268 | Msa1154100:CDS | 30.0% |
| TTGGAGAATGGTGAATAAAA+AGG | + | chr7_4:41469349-41469368 | None:intergenic | 30.0% | |
| AAACATAATTGATCGAGCTT+GGG | + | chr7_4:41469537-41469556 | None:intergenic | 30.0% | |
| ! | GATATTTGAGTTCCTTCAAA+CGG | + | chr7_4:41469794-41469813 | None:intergenic | 30.0% |
| AGAAACAAAACGAAACTGAA+TGG | + | chr7_4:41469859-41469878 | None:intergenic | 30.0% | |
| ! | TTCATGTTCCTTTTCTCTAA+GGG | + | chr7_4:41469933-41469952 | None:intergenic | 30.0% |
| ! | TTTCATGTTCCTTTTCTCTA+AGG | + | chr7_4:41469934-41469953 | None:intergenic | 30.0% |
| !!! | TTTTGTTGTTGTTGTTCAGA+AGG | - | chr7_4:41470097-41470116 | Msa1154100:CDS | 30.0% |
| !!! | AGATTAAGAAAGTACCGTTT+TGG | - | chr7_4:41470247-41470266 | Msa1154100:CDS | 30.0% |
| !!! | GATTAAGAAAGTACCGTTTT+GGG | - | chr7_4:41470248-41470267 | Msa1154100:CDS | 30.0% |
| !!! | ATTAAGAAAGTACCGTTTTG+GGG | - | chr7_4:41470249-41470268 | Msa1154100:CDS | 30.0% |
| GAGAATGGTGAATAAAAAGG+TGG | + | chr7_4:41469346-41469365 | None:intergenic | 35.0% | |
| GAAGTGAAAGAATTGGAGAA+TGG | + | chr7_4:41469361-41469380 | None:intergenic | 35.0% | |
| GAAAGGAGAAGTGAAAGAAT+TGG | + | chr7_4:41469368-41469387 | None:intergenic | 35.0% | |
| GAAACATAATTGATCGAGCT+TGG | + | chr7_4:41469538-41469557 | None:intergenic | 35.0% | |
| !! | TTTTCTCTAAGGGTTCGAAT+AGG | + | chr7_4:41469923-41469942 | None:intergenic | 35.0% |
| TATTCGAACCCTTAGAGAAA+AGG | - | chr7_4:41469922-41469941 | Msa1154100:CDS | 35.0% | |
| ATAGAAAAGCTTCCCCAAAA+CGG | + | chr7_4:41470264-41470283 | None:intergenic | 35.0% | |
| AATGAATGAAAGTGGTCCAT+AGG | - | chr7_4:41470387-41470406 | Msa1154100:five_prime_UTR | 35.0% | |
| GAGAATGGTGAATAAAAAGG+TGG | + | chr7_4:41469346-41469365 | None:intergenic | 35.0% | |
| GAAGTGAAAGAATTGGAGAA+TGG | + | chr7_4:41469361-41469380 | None:intergenic | 35.0% | |
| GAAAGGAGAAGTGAAAGAAT+TGG | + | chr7_4:41469368-41469387 | None:intergenic | 35.0% | |
| GAAACATAATTGATCGAGCT+TGG | + | chr7_4:41469538-41469557 | None:intergenic | 35.0% | |
| !! | TTTTCTCTAAGGGTTCGAAT+AGG | + | chr7_4:41469923-41469942 | None:intergenic | 35.0% |
| TATTCGAACCCTTAGAGAAA+AGG | - | chr7_4:41469922-41469941 | Msa1154100:CDS | 35.0% | |
| ATAGAAAAGCTTCCCCAAAA+CGG | + | chr7_4:41470264-41470283 | None:intergenic | 35.0% | |
| TGGTGAATAAAAAGGTGGTG+TGG | + | chr7_4:41469341-41469360 | None:intergenic | 40.0% | |
| GTTTGTGCTTTGTGGAAAGA+TGG | + | chr7_4:41469515-41469534 | None:intergenic | 40.0% | |
| CGATAGATTGTTCCGTTTGA+AGG | - | chr7_4:41469779-41469798 | Msa1154100:CDS | 40.0% | |
| GGAACTCAAATATCGATGCA+TGG | - | chr7_4:41469800-41469819 | Msa1154100:intron | 40.0% | |
| TTTCATACCTCTGATGTCGA+TGG | + | chr7_4:41469977-41469996 | None:intergenic | 40.0% | |
| TGTTCAGAAGGTGAAAACAG+AGG | - | chr7_4:41470109-41470128 | Msa1154100:CDS | 40.0% | |
| GAAGGTGAAAACAGAGGAAA+TGG | - | chr7_4:41470115-41470134 | Msa1154100:CDS | 40.0% | |
| AACAGAGGAAATGGTTGAGT+CGG | - | chr7_4:41470124-41470143 | Msa1154100:CDS | 40.0% | |
| TGGTGAATAAAAAGGTGGTG+TGG | + | chr7_4:41469341-41469360 | None:intergenic | 40.0% | |
| GTTTGTGCTTTGTGGAAAGA+TGG | + | chr7_4:41469515-41469534 | None:intergenic | 40.0% | |
| CGATAGATTGTTCCGTTTGA+AGG | - | chr7_4:41469779-41469798 | Msa1154100:CDS | 40.0% | |
| GGAACTCAAATATCGATGCA+TGG | - | chr7_4:41469800-41469819 | Msa1154100:intron | 40.0% | |
| TTTCATACCTCTGATGTCGA+TGG | + | chr7_4:41469977-41469996 | None:intergenic | 40.0% | |
| TGTTCAGAAGGTGAAAACAG+AGG | - | chr7_4:41470109-41470128 | Msa1154100:CDS | 40.0% | |
| GAAGGTGAAAACAGAGGAAA+TGG | - | chr7_4:41470115-41470134 | Msa1154100:CDS | 40.0% | |
| AACAGAGGAAATGGTTGAGT+CGG | - | chr7_4:41470124-41470143 | Msa1154100:CDS | 40.0% | |
| !! | TGGTTTGGTGTGGTTGAGAA+AGG | + | chr7_4:41469385-41469404 | None:intergenic | 45.0% |
| CAACCACACCAAACCAAACA+TGG | - | chr7_4:41469389-41469408 | Msa1154100:three_prime_UTR | 45.0% | |
| AAGCTGTGCCATGTTTGGTT+TGG | + | chr7_4:41469400-41469419 | None:intergenic | 45.0% | |
| TGCATAAGCTGTGCCATGTT+TGG | + | chr7_4:41469405-41469424 | None:intergenic | 45.0% | |
| GGAAAGATGGTGAGTGAGAT+CGG | + | chr7_4:41469502-41469521 | None:intergenic | 45.0% | |
| ! | GGACAGTTTTCCTTCTGGAT+CGG | + | chr7_4:41469570-41469589 | None:intergenic | 45.0% |
| ! | TGATCGGACAGTTTTCCTTC+TGG | + | chr7_4:41469575-41469594 | None:intergenic | 45.0% |
| GTTTGTGAACAAGCTGAACC+AGG | + | chr7_4:41470197-41470216 | None:intergenic | 45.0% | |
| !! | TGGTTTGGTGTGGTTGAGAA+AGG | + | chr7_4:41469385-41469404 | None:intergenic | 45.0% |
| CAACCACACCAAACCAAACA+TGG | - | chr7_4:41469389-41469408 | Msa1154100:three_prime_UTR | 45.0% | |
| AAGCTGTGCCATGTTTGGTT+TGG | + | chr7_4:41469400-41469419 | None:intergenic | 45.0% | |
| TGCATAAGCTGTGCCATGTT+TGG | + | chr7_4:41469405-41469424 | None:intergenic | 45.0% | |
| GGAAAGATGGTGAGTGAGAT+CGG | + | chr7_4:41469502-41469521 | None:intergenic | 45.0% | |
| ! | GGACAGTTTTCCTTCTGGAT+CGG | + | chr7_4:41469570-41469589 | None:intergenic | 45.0% |
| ! | TGATCGGACAGTTTTCCTTC+TGG | + | chr7_4:41469575-41469594 | None:intergenic | 45.0% |
| GTTTGTGAACAAGCTGAACC+AGG | + | chr7_4:41470197-41470216 | None:intergenic | 45.0% | |
| !! | GTGCCATGTTTGGTTTGGTG+TGG | + | chr7_4:41469395-41469414 | None:intergenic | 50.0% |
| !!! | ATTTTTGGTGTTCCGGTGGC+GGG | + | chr7_4:41469432-41469451 | None:intergenic | 50.0% |
| !!! | GATTTTTGGTGTTCCGGTGG+CGG | + | chr7_4:41469433-41469452 | None:intergenic | 50.0% |
| CCACCGGAACACCAAAAATC+CGG | - | chr7_4:41469433-41469452 | Msa1154100:three_prime_UTR | 50.0% | |
| !!! | TGGCCGGATTTTTGGTGTTC+CGG | + | chr7_4:41469439-41469458 | None:intergenic | 50.0% |
| ! | TTATGGGCTGAAGTGGTGTC+CGG | + | chr7_4:41469470-41469489 | None:intergenic | 50.0% |
| ! | GGAGTGTTTATGGGCTGAAG+TGG | + | chr7_4:41469477-41469496 | None:intergenic | 50.0% |
| !! | AGATCGGCGGGAGTGTTTAT+GGG | + | chr7_4:41469486-41469505 | None:intergenic | 50.0% |
| AAGATGGTGAGTGAGATCGG+CGG | + | chr7_4:41469499-41469518 | None:intergenic | 50.0% | |
| GAGCTTGGGTTTGTGCTTTG+TGG | + | chr7_4:41469523-41469542 | None:intergenic | 50.0% | |
| CGAAATCACACCGATCCAGA+AGG | - | chr7_4:41469557-41469576 | Msa1154100:CDS | 50.0% | |
| TCCAGTGGAGAAGTGGTGAT+CGG | + | chr7_4:41469591-41469610 | None:intergenic | 50.0% | |
| GACTGCGATGAAGAAGAAGC+TGG | - | chr7_4:41469632-41469651 | Msa1154100:intron | 50.0% | |
| GTTGCTTGACGCGAAGATGA+AGG | - | chr7_4:41469710-41469729 | Msa1154100:intron | 50.0% | |
| TGACGCGAAGATGAAGGAGA+TGG | - | chr7_4:41469716-41469735 | Msa1154100:intron | 50.0% | |
| AACAGCACCATCGACATCAG+AGG | - | chr7_4:41469967-41469986 | Msa1154100:CDS | 50.0% | |
| ! | TCTGAAGTGCTTCAGAGTCC+TGG | - | chr7_4:41470176-41470195 | Msa1154100:CDS | 50.0% |
| !! | GTGCCATGTTTGGTTTGGTG+TGG | + | chr7_4:41469395-41469414 | None:intergenic | 50.0% |
| !!! | ATTTTTGGTGTTCCGGTGGC+GGG | + | chr7_4:41469432-41469451 | None:intergenic | 50.0% |
| !!! | GATTTTTGGTGTTCCGGTGG+CGG | + | chr7_4:41469433-41469452 | None:intergenic | 50.0% |
| CCACCGGAACACCAAAAATC+CGG | - | chr7_4:41469433-41469452 | Msa1154100:three_prime_UTR | 50.0% | |
| !!! | TGGCCGGATTTTTGGTGTTC+CGG | + | chr7_4:41469439-41469458 | None:intergenic | 50.0% |
| ! | TTATGGGCTGAAGTGGTGTC+CGG | + | chr7_4:41469470-41469489 | None:intergenic | 50.0% |
| ! | GGAGTGTTTATGGGCTGAAG+TGG | + | chr7_4:41469477-41469496 | None:intergenic | 50.0% |
| !! | AGATCGGCGGGAGTGTTTAT+GGG | + | chr7_4:41469486-41469505 | None:intergenic | 50.0% |
| AAGATGGTGAGTGAGATCGG+CGG | + | chr7_4:41469499-41469518 | None:intergenic | 50.0% | |
| GAGCTTGGGTTTGTGCTTTG+TGG | + | chr7_4:41469523-41469542 | None:intergenic | 50.0% | |
| CGAAATCACACCGATCCAGA+AGG | - | chr7_4:41469557-41469576 | Msa1154100:CDS | 50.0% | |
| TCCAGTGGAGAAGTGGTGAT+CGG | + | chr7_4:41469591-41469610 | None:intergenic | 50.0% | |
| GACTGCGATGAAGAAGAAGC+TGG | - | chr7_4:41469632-41469651 | Msa1154100:intron | 50.0% | |
| GTTGCTTGACGCGAAGATGA+AGG | - | chr7_4:41469710-41469729 | Msa1154100:intron | 50.0% | |
| TGACGCGAAGATGAAGGAGA+TGG | - | chr7_4:41469716-41469735 | Msa1154100:intron | 50.0% | |
| AACAGCACCATCGACATCAG+AGG | - | chr7_4:41469967-41469986 | Msa1154100:CDS | 50.0% | |
| ! | TCTGAAGTGCTTCAGAGTCC+TGG | - | chr7_4:41470176-41470195 | Msa1154100:CDS | 50.0% |
| CTTATGCAAACACCCGCCAC+CGG | - | chr7_4:41469417-41469436 | Msa1154100:three_prime_UTR | 55.0% | |
| !!! | CCGGATTTTTGGTGTTCCGG+TGG | + | chr7_4:41469436-41469455 | None:intergenic | 55.0% |
| !! | GAGATCGGCGGGAGTGTTTA+TGG | + | chr7_4:41469487-41469506 | None:intergenic | 55.0% |
| AGATGGTGAGTGAGATCGGC+GGG | + | chr7_4:41469498-41469517 | None:intergenic | 55.0% | |
| TCCGATCACCACTTCTCCAC+TGG | - | chr7_4:41469587-41469606 | Msa1154100:CDS | 55.0% | |
| CTTATGCAAACACCCGCCAC+CGG | - | chr7_4:41469417-41469436 | Msa1154100:three_prime_UTR | 55.0% | |
| !!! | CCGGATTTTTGGTGTTCCGG+TGG | + | chr7_4:41469436-41469455 | None:intergenic | 55.0% |
| !! | GAGATCGGCGGGAGTGTTTA+TGG | + | chr7_4:41469487-41469506 | None:intergenic | 55.0% |
| AGATGGTGAGTGAGATCGGC+GGG | + | chr7_4:41469498-41469517 | None:intergenic | 55.0% | |
| TCCGATCACCACTTCTCCAC+TGG | - | chr7_4:41469587-41469606 | Msa1154100:CDS | 55.0% | |
| ! | CCAGAGCGTGGCCGGATTTT+TGG | + | chr7_4:41469447-41469466 | None:intergenic | 60.0% |
| CCAAAAATCCGGCCACGCTC+TGG | - | chr7_4:41469444-41469463 | Msa1154100:three_prime_UTR | 60.0% | |
| CGACGTCTCCAGTGGAGAAG+TGG | + | chr7_4:41469598-41469617 | None:intergenic | 60.0% | |
| TCTGCAAGCGACGTCTCCAG+TGG | + | chr7_4:41469606-41469625 | None:intergenic | 60.0% | |
| ACTGGAGACGTCGCTTGCAG+AGG | - | chr7_4:41469605-41469624 | Msa1154100:intron | 60.0% | |
| ! | CCAGAGCGTGGCCGGATTTT+TGG | + | chr7_4:41469447-41469466 | None:intergenic | 60.0% |
| CCAAAAATCCGGCCACGCTC+TGG | - | chr7_4:41469444-41469463 | Msa1154100:three_prime_UTR | 60.0% | |
| CGACGTCTCCAGTGGAGAAG+TGG | + | chr7_4:41469598-41469617 | None:intergenic | 60.0% | |
| TCTGCAAGCGACGTCTCCAG+TGG | + | chr7_4:41469606-41469625 | None:intergenic | 60.0% | |
| ACTGGAGACGTCGCTTGCAG+AGG | - | chr7_4:41469605-41469624 | Msa1154100:intron | 60.0% | |
| AAATCCGGCCACGCTCTGGC+CGG | - | chr7_4:41469448-41469467 | Msa1154100:three_prime_UTR | 65.0% | |
| AAATCCGGCCACGCTCTGGC+CGG | - | chr7_4:41469448-41469467 | Msa1154100:three_prime_UTR | 65.0% | |
| AGTGGTGTCCGGCCAGAGCG+TGG | + | chr7_4:41469459-41469478 | None:intergenic | 70.0% | |
| AGTGGTGTCCGGCCAGAGCG+TGG | + | chr7_4:41469459-41469478 | None:intergenic | 70.0% | |
| GTGTCCGGCCAGAGCGTGGC+CGG | + | chr7_4:41469455-41469474 | None:intergenic | 75.0% | |
| GTGTCCGGCCAGAGCGTGGC+CGG | + | chr7_4:41469455-41469474 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 41469315 | 41470408 | 41469315 | ID=Msa1154100;Name=Msa1154100 |
| chr7_4 | mRNA | 41469315 | 41470408 | 41469315 | ID=Msa1154100-mRNA-1;Parent=Msa1154100;Name=Msa1154100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=93|1|1|1|1|1|3|161|207 |
| chr7_4 | exon | 41469315 | 41469607 | 41469315 | ID=Msa1154100-mRNA-1:exon:10012;Parent=Msa1154100-mRNA-1 |
| chr7_4 | exon | 41469735 | 41469812 | 41469735 | ID=Msa1154100-mRNA-1:exon:10011;Parent=Msa1154100-mRNA-1 |
| chr7_4 | exon | 41469902 | 41470408 | 41469902 | ID=Msa1154100-mRNA-1:exon:10010;Parent=Msa1154100-mRNA-1 |
| chr7_4 | five_prime_UTR | 41470316 | 41470408 | 41470316 | ID=Msa1154100-mRNA-1:five_prime_utr;Parent=Msa1154100-mRNA-1 |
| chr7_4 | CDS | 41469902 | 41470315 | 41469902 | ID=Msa1154100-mRNA-1:cds;Parent=Msa1154100-mRNA-1 |
| chr7_4 | CDS | 41469735 | 41469812 | 41469735 | ID=Msa1154100-mRNA-1:cds;Parent=Msa1154100-mRNA-1 |
| chr7_4 | CDS | 41469476 | 41469607 | 41469476 | ID=Msa1154100-mRNA-1:cds;Parent=Msa1154100-mRNA-1 |
| chr7_4 | three_prime_UTR | 41469315 | 41469475 | 41469315 | ID=Msa1154100-mRNA-1:three_prime_utr;Parent=Msa1154100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
