AlfalfaGEDB | Msa1154100

M. sativa cultivar zhongmu-4 / Msa1154100

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154100	XP_013449250.1	87.383	214	19	4	1	207	1	213	5.96e-110	323

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154100	A0A072U0R7	87.383	214	19	4	1	207	1	213	2.85e-110	323

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa1154100	0.816205	6.234202e-52	-8.615850e-47
Msa0016040	Msa1154100	0.819110	1.379435e-52	-8.615850e-47
Msa0025160	Msa1154100	0.802321	5.929514e-49	-8.615850e-47
Msa0025580	Msa1154100	0.817393	3.374989e-52	-8.615850e-47
Msa0027280	Msa1154100	0.808162	3.545672e-50	-8.615850e-47
Msa0035380	Msa1154100	0.803984	2.684733e-49	-8.615850e-47
Msa0048510	Msa1154100	0.812948	3.278335e-51	-8.615850e-47
Msa0056180	Msa1154100	0.806257	8.982274e-50	-8.615850e-47
Msa0067330	Msa1154100	0.819902	9.100943e-53	-8.615850e-47
Msa0073120	Msa1154100	0.848504	5.875809e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154100	MtrunA17_Chr7g0245001	87.383	214	19	4	1	207	1	213	5.48e-114	323

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154100	AT5G01910.1	49.635	137	54	3	19	152	4	128	8.38e-30	108
Msa1154100	AT5G01910.2	49.635	137	54	3	19	152	4	128	1.62e-29	107

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Find 47 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAATTGATCGAGCTT+GGG	0.455044	7_4:+41470167	None:intergenic
AAATCCGGCCACGCTCTGGC+CGG	0.529930	7_4:-41470253	Msa1154100:CDS
AACAGAGGAAATGGTTGAGT+CGG	0.536566	7_4:-41469577	Msa1154100:CDS
AACAGCACCATCGACATCAG+AGG	0.666142	7_4:-41469734	Msa1154100:intron
AAGATGGTGAGTGAGATCGG+CGG	0.726270	7_4:+41470205	None:intergenic
AAGCTGTGCCATGTTTGGTT+TGG	0.436936	7_4:+41470304	None:intergenic
ACTGGAGACGTCGCTTGCAG+AGG	0.576756	7_4:-41470096	Msa1154100:CDS
AGATCGGCGGGAGTGTTTAT+GGG	0.461473	7_4:+41470218	None:intergenic
AGATGGTGAGTGAGATCGGC+GGG	0.512562	7_4:+41470206	None:intergenic
AGATTAAGAAAGTACCGTTT+TGG	0.310104	7_4:-41469454	Msa1154100:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAGAATGGTGAATAAAA+AGG	+	chr7_4:41469349-41469368	None:intergenic	30.0%
AAACATAATTGATCGAGCTT+GGG	+	chr7_4:41469537-41469556	None:intergenic	30.0%
AGAAACAAAACGAAACTGAA+TGG	+	chr7_4:41469859-41469878	None:intergenic	30.0%
TTGGAGAATGGTGAATAAAA+AGG	+	chr7_4:41469349-41469368	None:intergenic	30.0%
AAACATAATTGATCGAGCTT+GGG	+	chr7_4:41469537-41469556	None:intergenic	30.0%
AGAAACAAAACGAAACTGAA+TGG	+	chr7_4:41469859-41469878	None:intergenic	30.0%
GAGAATGGTGAATAAAAAGG+TGG	+	chr7_4:41469346-41469365	None:intergenic	35.0%
GAAGTGAAAGAATTGGAGAA+TGG	+	chr7_4:41469361-41469380	None:intergenic	35.0%
GAAAGGAGAAGTGAAAGAAT+TGG	+	chr7_4:41469368-41469387	None:intergenic	35.0%
GAAACATAATTGATCGAGCT+TGG	+	chr7_4:41469538-41469557	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	41469315	41470408	41469315	ID=Msa1154100;Name=Msa1154100
chr7_4	mRNA	41469315	41470408	41469315	ID=Msa1154100-mRNA-1;Parent=Msa1154100;Name=Msa1154100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=93\|1\|1\|1\|1\|1\|3\|161\|207
chr7_4	exon	41469315	41469607	41469315	ID=Msa1154100-mRNA-1:exon:10012;Parent=Msa1154100-mRNA-1
chr7_4	exon	41469735	41469812	41469735	ID=Msa1154100-mRNA-1:exon:10011;Parent=Msa1154100-mRNA-1
chr7_4	exon	41469902	41470408	41469902	ID=Msa1154100-mRNA-1:exon:10010;Parent=Msa1154100-mRNA-1
chr7_4	five_prime_UTR	41470316	41470408	41470316	ID=Msa1154100-mRNA-1:five_prime_utr;Parent=Msa1154100-mRNA-1
chr7_4	CDS	41469902	41470315	41469902	ID=Msa1154100-mRNA-1:cds;Parent=Msa1154100-mRNA-1
chr7_4	CDS	41469735	41469812	41469735	ID=Msa1154100-mRNA-1:cds;Parent=Msa1154100-mRNA-1
chr7_4	CDS	41469476	41469607	41469476	ID=Msa1154100-mRNA-1:cds;Parent=Msa1154100-mRNA-1
chr7_4	three_prime_UTR	41469315	41469475	41469315	ID=Msa1154100-mRNA-1:three_prime_utr;Parent=Msa1154100-mRNA-1

Gene Sequence

>Msa1154100

ATGGCACAGCTTATGCAAACACCCGCCACCGGAACACCAAAAATCCGGCCACGCTCTGGCCGGACACCACTTCAGCCCATAAACACTCCCGCCGATCTCACTCACCATCTTTCCACAAAGCACAAACCCAAGCTCGATCAATTATGTTTCGAAATCACACCGATCCAGAAGGAAAACTGTCCGATCACCACTTCTCCACTGGAGACGTCGCTTGCAGAGGAGCTGACTGCGATGAAGAAGAAGCTGGAGAGACTAAGAATCGACAAAGAAAAGACAGAGAAAATGCTGAAAGAGAGAGAAGCGTTGCTTGACGCGAAGATGAAGGAGATGGAAGAGAAAAGCGAGATTCAGAAGAATCTCGAAATTCAAGTCGATAGATTGTTCCGTTTGAAGGAACTCAAATATCGATGCATGAGAGTTTCTCCTATTCGAACCCTTAGAGAAAAGGAACATGAAAAGATTATCAACGAAACAGCACCATCGACATCAGAGAAGGTGAAAACAGAGGAAATGGTTGAGTCGGTATCTGAATCTGAATCTGTTAGAGATGAATCTGAAGTGCTTCAGAGTCCTGGTTCAGCTTGTTCACAAACAAATACTATACAAACAAAATCTGAAAATTAA

Protein sequence

>Msa1154100

MAQLMQTPATGTPKIRPRSGRTPLQPINTPADLTHHLSTKHKPKLDQLCFEITPIQKENCPITTSPLETSLAEELTAMKKKLERLRIDKEKTEKMLKEREALLDAKMKEMEEKSEIQKNLEIQVDRLFRLKELKYRCMRVSPIRTLREKEHEKIINETAPSTSEKVKTEEMVESVSESESVRDESEVLQSPGSACSQTNTIQTKSEN*