AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086460 MtrunA17_Chr1g0202661 90.000 310 17 3 1 310 1 296 0.0 521
Msa0086460 MtrunA17_Chr6g0468841 72.555 317 76 5 1 310 1 313 1.62e-155 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086460 AT4G25700.1 66.346 312 86 5 1 307 1 298 1.13e-144 410
Msa0086460 AT5G52570.1 67.508 317 74 8 1 308 1 297 4.47e-136 388
Msa0086460 AT4G25700.2 58.952 229 75 5 1 224 1 215 3.80e-85 255
Msa0086460 AT4G25700.3 58.952 229 75 5 1 224 1 215 3.80e-85 255
Msa0086460 AT5G52570.2 39.936 313 98 11 1 308 1 228 2.61e-41 144

Find 106 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGATTGTAGGGCTTTA+AGG 0.141087 1_2:+67183540 None:intergenic
TTTAGGTAGGTATGGAATAT+TGG 0.214997 1_2:-67182805 Msa0086460:intron
TTCATCTGGTTAGTGTGTTT+TGG 0.236695 1_2:+67183373 None:intergenic
CTCTCCTTTCACCCATTCAT+TGG 0.248086 1_2:-67183675 Msa0086460:five_prime_UTR
GGTCTTGGAATTACGGTGTT+TGG 0.277671 1_2:-67182217 Msa0086460:CDS
GCAATTGCTCTTCTCTCATA+TGG 0.287011 1_2:-67182437 Msa0086460:CDS
TTCTTGTTCTTTGGGTTTGA+AGG 0.312771 1_2:+67183434 None:intergenic
TAGCTTTGGTGTTACCTCTA+TGG 0.317708 1_2:-67183233 Msa0086460:CDS
TGAGGGCTGGGTTTACTGTT+AGG 0.327820 1_2:+67183328 None:intergenic
TTAGGTAGGTATGGAATATT+GGG 0.328698 1_2:-67182804 Msa0086460:intron
CTTCACCGTTTGTGTTCTAA+TGG 0.335091 1_2:-67183401 Msa0086460:CDS
GTCTTGGAATTACGGTGTTT+GGG 0.363241 1_2:-67182216 Msa0086460:CDS
GATGGGCTCATGAGGTTCTA+TGG 0.363709 1_2:-67182778 Msa0086460:CDS
GCTATGACGGAAACCTCTTA+AGG 0.364201 1_2:+67183462 None:intergenic
TGACTAGGGTCTTGGAATTA+CGG 0.376865 1_2:-67182224 Msa0086460:intron
TGAGGGTTGGAGGAGATTGT+AGG 0.377556 1_2:+67183531 None:intergenic
TTGGTGCCTGGTCTCTGCTT+TGG 0.387095 1_2:-67182398 Msa0086460:CDS
GGGAAGAAGTTGAGGGTTGG+AGG 0.387923 1_2:+67183521 None:intergenic
GTATGGAATATTGGGCTAGA+TGG 0.394991 1_2:-67182796 Msa0086460:CDS
GTTCCTTGGTCTGAAATGTT+TGG 0.410492 1_2:-67182937 Msa0086460:CDS
GGGGAAGGGGAAGAAGTTGA+GGG 0.413157 1_2:+67183514 None:intergenic
TCATCTTATGACTAGGGTCT+TGG 0.416939 1_2:-67182232 Msa0086460:intron
CTATGACGGAAACCTCTTAA+GGG 0.426369 1_2:+67183463 None:intergenic
TTTAACAAGGGATTGGTGCC+TGG 0.432109 1_2:-67182410 Msa0086460:CDS
GAGGGATGAGTGGGAAATGA+AGG 0.432487 1_2:+67183631 None:intergenic
AGGGGAAGGGGAAGAAGTTG+AGG 0.434588 1_2:+67183513 None:intergenic
GGCACATTTGCCCTCTCAGT+TGG 0.435097 1_2:-67182916 Msa0086460:CDS
GAGAGAAGGGATTGGATGGA+TGG 0.435764 1_2:+67183693 None:intergenic
CATGTTTGTCCATGATGGAT+TGG 0.437840 1_2:-67182185 Msa0086460:CDS
TTATAGATTCTCATGGCAAA+TGG 0.438735 1_2:-67183194 Msa0086460:CDS
CCCCTTTGAATTTGTCCGAA+TGG 0.445592 1_2:+67181925 None:intergenic
GAGGGTTGGAGGAGATTGTA+GGG 0.445723 1_2:+67183532 None:intergenic
GGGCTTTAAGGTTGTGGCGG+TGG 0.448289 1_2:+67183552 None:intergenic
GCCTACATGTTTGTCCATGA+TGG 0.451700 1_2:-67182190 Msa0086460:CDS
GTACTAGTGGAGAGGTTCCT+TGG 0.454261 1_2:-67182951 Msa0086460:CDS
AGCTCAAATGGTCCCTCTCT+TGG 0.457561 1_2:+67182494 None:intergenic
TAGTGTTGTTAGAGAGAGAG+AGG 0.461803 1_2:+67183612 None:intergenic
TTGTTTGCAGCTCCACCATT+CGG 0.466820 1_2:-67181940 Msa0086460:intron
GACAGAGACAAGCCAATGAA+TGG 0.467951 1_2:+67183663 None:intergenic
AGCTAGAGAAAGAGATAAGT+AGG 0.469767 1_2:-67181447 Msa0086460:CDS
AAAACATCATTAAGCTCAAA+TGG 0.470967 1_2:+67182482 None:intergenic
TCAGCCGCCATGGAGAATAA+AGG 0.471323 1_2:+67183580 None:intergenic
AACAGCTAAGATTGCCATAG+AGG 0.474363 1_2:+67183219 None:intergenic
AAATTCAAAGGGGTGCCATA+TGG 0.476176 1_2:-67181915 Msa0086460:CDS
ACCATTCGGACAAATTCAAA+GGG 0.476981 1_2:-67181926 Msa0086460:CDS
GCAGCTGTAATGTCTAGCTT+TGG 0.479617 1_2:-67183247 Msa0086460:CDS
AGGAGAACAAGATCATATAC+TGG 0.482339 1_2:-67181427 Msa0086460:CDS
TATGAGAGAAGAGCAATTGC+AGG 0.484302 1_2:+67182440 None:intergenic
GAAGTAGGGCACGTTGGCAA+TGG 0.491586 1_2:+67182138 None:intergenic
ATCGTAACCTTTATTCTCCA+TGG 0.493629 1_2:-67183587 Msa0086460:exon
AGACCTCATGCATGTGCCAC+AGG 0.495599 1_2:+67182747 None:intergenic
ACGTTGGCAATGGGACCCAC+AGG 0.500337 1_2:+67182148 None:intergenic
AGCAGCAACTCTTGTGAAGT+AGG 0.501312 1_2:+67182123 None:intergenic
ATTGTAGGGCTTTAAGGTTG+TGG 0.501902 1_2:+67183546 None:intergenic
GGTGAAAGGAGAGAAGGGAT+TGG 0.504657 1_2:+67183685 None:intergenic
GAATGGGTGAAAGGAGAGAA+GGG 0.508769 1_2:+67183680 None:intergenic
AAGGGGAAGAAGTTGAGGGT+TGG 0.509214 1_2:+67183518 None:intergenic
TTAGTAATAAATAATACAGC+AGG 0.511514 1_2:-67181295 Msa0086460:three_prime_UTR
AAAGGAGAGAAGGGATTGGA+TGG 0.511715 1_2:+67183689 None:intergenic
TATGGAATATTGGGCTAGAT+GGG 0.511988 1_2:-67182795 Msa0086460:CDS
AAGTAGGGCACGTTGGCAAT+GGG 0.513920 1_2:+67182139 None:intergenic
ATCTTCCATTAGAACACAAA+CGG 0.516336 1_2:+67183396 None:intergenic
CACCATTCGGACAAATTCAA+AGG 0.517507 1_2:-67181927 Msa0086460:CDS
AGTGTTGTTAGAGAGAGAGA+GGG 0.521837 1_2:+67183613 None:intergenic
CTTTGAATTTGTCCGAATGG+TGG 0.523450 1_2:+67181928 None:intergenic
GTGCAGGAAGTTGAAGAAGT+GGG 0.525266 1_2:-67181481 Msa0086460:intron
ACAGAGACAAGCCAATGAAT+GGG 0.528436 1_2:+67183664 None:intergenic
TTTGTATGATAGGGTACTAG+TGG 0.536420 1_2:-67182964 Msa0086460:intron
CTGTTTATTATAGATTCTCA+TGG 0.538973 1_2:-67183201 Msa0086460:CDS
GGTGCAGGAAGTTGAAGAAG+TGG 0.541999 1_2:-67181482 Msa0086460:intron
GGGCTGGGTTTACTGTTAGG+AGG 0.546115 1_2:+67183331 None:intergenic
CAAGCCAATGAATGGGTGAA+AGG 0.555081 1_2:+67183671 None:intergenic
TCTTATGAACCAATCCATCA+TGG 0.562531 1_2:+67182176 None:intergenic
GATGAGTGGGAAATGAAGGT+TGG 0.564852 1_2:+67183635 None:intergenic
TTCCCTGTGGCACATGCATG+AGG 0.571758 1_2:-67182750 Msa0086460:intron
TGAATGGGTGAAAGGAGAGA+AGG 0.571800 1_2:+67183679 None:intergenic
GGTGGAAAGTTCAGCCGCCA+TGG 0.584774 1_2:+67183570 None:intergenic
GCAGCAACTCTTGTGAAGTA+GGG 0.586414 1_2:+67182124 None:intergenic
CAGGAAGTTGAAGAAGTGGG+AGG 0.586564 1_2:-67181478 Msa0086460:CDS
TAGACATTACAGCTGCAACT+AGG 0.594222 1_2:+67183254 None:intergenic
AGGAAGTTGAAGAAGTGGGA+GGG 0.595124 1_2:-67181477 Msa0086460:CDS
AACGCAACATCACAAAATTG+TGG 0.602925 1_2:-67183723 Msa0086460:five_prime_UTR
GTCACATCATCGACCAAGAG+AGG 0.605840 1_2:-67182507 Msa0086460:CDS
TTGGGCTAGATGGGCTCATG+AGG 0.606671 1_2:-67182786 Msa0086460:CDS
TATGACGGAAACCTCTTAAG+GGG 0.609525 1_2:+67183464 None:intergenic
TACAGCAGCACCAACTGAGA+GGG 0.619847 1_2:+67182906 None:intergenic
TTCTATGGCATGCTTCCCTG+TGG 0.625607 1_2:-67182763 Msa0086460:CDS
ATATATACAAAAGAAATGAA+AGG 0.627298 1_2:+67183761 None:intergenic
GACCTCATGCATGTGCCACA+GGG 0.632725 1_2:+67182748 None:intergenic
AGAGCAATTCGATTAATGCA+TGG 0.641419 1_2:-67181352 Msa0086460:three_prime_UTR
TAGATTCTCATGGCAAATGG+AGG 0.648620 1_2:-67183191 Msa0086460:intron
ACTGCACCAAAGCAGAGACC+AGG 0.649131 1_2:+67182392 None:intergenic
TCCATCATGGACAAACATGT+AGG 0.652573 1_2:+67182189 None:intergenic
GTAGGGCTTTAAGGTTGTGG+CGG 0.654013 1_2:+67183549 None:intergenic
TCACATCATCGACCAAGAGA+GGG 0.657623 1_2:-67182506 Msa0086460:CDS
GTGCCAAACATTTCAGACCA+AGG 0.665898 1_2:+67182934 None:intergenic
GTAACCTTTATTCTCCATGG+CGG 0.666735 1_2:-67183584 Msa0086460:exon
TTACAGCAGCACCAACTGAG+AGG 0.672349 1_2:+67182905 None:intergenic
TCTTGTGAAGTAGGGCACGT+TGG 0.672979 1_2:+67182132 None:intergenic
ATGATAGGGTACTAGTGGAG+AGG 0.675739 1_2:-67182959 Msa0086460:intron
CGTTGGCAATGGGACCCACA+GGG 0.676768 1_2:+67182149 None:intergenic
GGTTCATAAGAGATTCCCTG+TGG 0.688013 1_2:-67182164 Msa0086460:CDS
ATGACGGAAACCTCTTAAGG+GGG 0.694254 1_2:+67183465 None:intergenic
CACTAACCAGATGAAAACTG+AGG 0.695160 1_2:-67183365 Msa0086460:CDS
GTTCATAAGAGATTCCCTGT+GGG 0.700599 1_2:-67182163 Msa0086460:CDS
CCATTCGGACAAATTCAAAG+GGG 0.749285 1_2:-67181925 Msa0086460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATACAAAAGAAATGAA+AGG + chr1_2:67181223-67181242 None:intergenic 15.0%
!!! AAAATGAAATTGGTTAATTT+TGG - chr1_2:67182130-67182149 Msa0086460:CDS 15.0%
!!! AATTCAACATTGATTTTTTT+AGG - chr1_2:67182159-67182178 Msa0086460:CDS 15.0%
!!! ATTTTTATTTTTTGTGCAAA+TGG - chr1_2:67182988-67183007 Msa0086460:intron 15.0%
!!! TTTTTATTTTTTGTGCAAAT+GGG - chr1_2:67182989-67183008 Msa0086460:intron 15.0%
!!! ATTTTTAGTTGCACAAAAAT+TGG - chr1_2:67181676-67181695 Msa0086460:intron 20.0%
!!! TCATATGGTTTTTTTAACAA+GGG - chr1_2:67182559-67182578 Msa0086460:intron 20.0%
!! TTAGTAAATCCCTTAATTAA+CGG - chr1_2:67182641-67182660 Msa0086460:intron 20.0%
!! TAAACAAAAGAAAATATGAG+TGG - chr1_2:67182946-67182965 Msa0086460:CDS 20.0%
!! AAAAAAAAAAACCAAGAAGA+GGG + chr1_2:67183129-67183148 None:intergenic 20.0%
!! TTAGTAATAAATAATACAGC+AGG - chr1_2:67183686-67183705 Msa0086460:five_prime_UTR 20.0%
!!! TGTTGATTTTCTTGTTCTTT+GGG + chr1_2:67181558-67181577 None:intergenic 25.0%
! TTTGTGCAACTAAAAATTGA+GGG + chr1_2:67181673-67181692 None:intergenic 25.0%
!! TTTTGTGCAACTAAAAATTG+AGG + chr1_2:67181674-67181693 None:intergenic 25.0%
! CTGTTTATTATAGATTCTCA+TGG - chr1_2:67181780-67181799 Msa0086460:intron 25.0%
!!! ATCGTTTTTTGAATGATGTT+TGG - chr1_2:67181990-67182009 Msa0086460:intron 25.0%
!!! TCGTTTTTTGAATGATGTTT+GGG - chr1_2:67181991-67182010 Msa0086460:intron 25.0%
! TCAGCAATTGAAAATGAAAT+TGG - chr1_2:67182120-67182139 Msa0086460:CDS 25.0%
!!! CAACATTGATTTTTTTAGGT+AGG - chr1_2:67182163-67182182 Msa0086460:CDS 25.0%
!!! TTGATTTTTTTAGGTAGGTA+TGG - chr1_2:67182168-67182187 Msa0086460:CDS 25.0%
! TGTGAAAGAAAAGAGAAAAT+GGG + chr1_2:67182283-67182302 None:intergenic 25.0%
! ATGTGAAAGAAAAGAGAAAA+TGG + chr1_2:67182284-67182303 None:intergenic 25.0%
! ATGTGAATAAACAAATGCAT+TGG - chr1_2:67182330-67182349 Msa0086460:intron 25.0%
! AAAACATCATTAAGCTCAAA+TGG + chr1_2:67182502-67182521 None:intergenic 25.0%
!!! CTCATATGGTTTTTTTAACA+AGG - chr1_2:67182558-67182577 Msa0086460:intron 25.0%
! TCAAGCAATTCTTAATTACT+TGG + chr1_2:67182889-67182908 None:intergenic 25.0%
! CAAAAAAAAAAACCAAGAAG+AGG + chr1_2:67183130-67183149 None:intergenic 25.0%
! GATTATTCATCAATTAAGTG+TGG - chr1_2:67183225-67183244 Msa0086460:CDS 25.0%
!!! GTTTAAAAGAATTTTGAGTG+TGG - chr1_2:67183606-67183625 Msa0086460:five_prime_UTR 25.0%
!!! ACAGCATGTTATTTTAATAC+AGG - chr1_2:67183730-67183749 Msa0086460:five_prime_UTR 25.0%
!! TTTGAAGGATTTTGCTATGA+CGG + chr1_2:67181535-67181554 None:intergenic 30.0%
!!! GTGTTGATTTTCTTGTTCTT+TGG + chr1_2:67181559-67181578 None:intergenic 30.0%
ATCTTCCATTAGAACACAAA+CGG + chr1_2:67181588-67181607 None:intergenic 30.0%
TTATAGATTCTCATGGCAAA+TGG - chr1_2:67181787-67181806 Msa0086460:intron 30.0%
! ATTTGACACCGTAATTTTGT+AGG - chr1_2:67181864-67181883 Msa0086460:intron 30.0%
TTTCAGCTCCTACAAAATTA+CGG + chr1_2:67181875-67181894 None:intergenic 30.0%
! TAAGTGCATGTTTGAAATGA+CGG + chr1_2:67181955-67181974 None:intergenic 30.0%
!! TTTGGGTTGTTTGTATGATA+GGG - chr1_2:67182008-67182027 Msa0086460:intron 30.0%
TTTAGGTAGGTATGGAATAT+TGG - chr1_2:67182176-67182195 Msa0086460:CDS 30.0%
TTAGGTAGGTATGGAATATT+GGG - chr1_2:67182177-67182196 Msa0086460:CDS 30.0%
! GCAAAATATTCAAGTTAGCA+TGG + chr1_2:67182409-67182428 None:intergenic 30.0%
GATTCAATGCTATTGGTATA+AGG + chr1_2:67182431-67182450 None:intergenic 30.0%
CATCTTTGATTCAATGCTAT+TGG + chr1_2:67182438-67182457 None:intergenic 30.0%
!!! TGGTTTTTTTAACAAGGGAT+TGG - chr1_2:67182564-67182583 Msa0086460:intron 30.0%
CCAATGAAACCGTTAATTAA+GGG + chr1_2:67182653-67182672 None:intergenic 30.0%
CCTTAATTAACGGTTTCATT+GGG - chr1_2:67182651-67182670 Msa0086460:intron 30.0%
TCATTTCAGAGAATACATCA+GGG + chr1_2:67182724-67182743 None:intergenic 30.0%
CAAACAAACAACAAAACCAA+AGG + chr1_2:67183028-67183047 None:intergenic 30.0%
! CAAATTTGGATGCATTTTGT+GGG - chr1_2:67183446-67183465 Msa0086460:CDS 30.0%
AACGCAACATCACAAAATTG+TGG - chr1_2:67181258-67181277 Msa0086460:three_prime_UTR 35.0%
ATCGTAACCTTTATTCTCCA+TGG - chr1_2:67181394-67181413 Msa0086460:three_prime_UTR 35.0%
! TTCTTGTTCTTTGGGTTTGA+AGG + chr1_2:67181550-67181569 None:intergenic 35.0%
! TTCATCTGGTTAGTGTGTTT+TGG + chr1_2:67181611-67181630 None:intergenic 35.0%
! TTTCTTCCTCAGTTTTCATC+TGG + chr1_2:67181625-67181644 None:intergenic 35.0%
!! GTTTGGGTTGTTTGTATGAT+AGG - chr1_2:67182007-67182026 Msa0086460:intron 35.0%
! TTTGTATGATAGGGTACTAG+TGG - chr1_2:67182017-67182036 Msa0086460:intron 35.0%
! TATGGAATATTGGGCTAGAT+GGG - chr1_2:67182186-67182205 Msa0086460:CDS 35.0%
AAAAGAGAAAATGGGAAGAC+TGG + chr1_2:67182275-67182294 None:intergenic 35.0%
CCCTTAATTAACGGTTTCAT+TGG - chr1_2:67182650-67182669 Msa0086460:intron 35.0%
CCCAATGAAACCGTTAATTA+AGG + chr1_2:67182654-67182673 None:intergenic 35.0%
GTCATTTCAGAGAATACATC+AGG + chr1_2:67182725-67182744 None:intergenic 35.0%
ACATCCTCATCTTATGACTA+GGG - chr1_2:67182743-67182762 Msa0086460:intron 35.0%
TCTTATGAACCAATCCATCA+TGG + chr1_2:67182808-67182827 None:intergenic 35.0%
TGTGCAAATGGGATCTAATT+TGG - chr1_2:67183000-67183019 Msa0086460:intron 35.0%
ACCATTCGGACAAATTCAAA+GGG - chr1_2:67183055-67183074 Msa0086460:intron 35.0%
TGTGGAGAAAAGAGAAAAAC+TGG - chr1_2:67183243-67183262 Msa0086460:CDS 35.0%
GCTAGTTGAGTAGTACTTAT+GGG - chr1_2:67183325-67183344 Msa0086460:CDS 35.0%
CTAGTTGAGTAGTACTTATG+GGG - chr1_2:67183326-67183345 Msa0086460:CDS 35.0%
CCACAAAATGCATCCAAATT+TGG + chr1_2:67183448-67183467 None:intergenic 35.0%
! CCAAATTTGGATGCATTTTG+TGG - chr1_2:67183445-67183464 Msa0086460:CDS 35.0%
AGCTAGAGAAAGAGATAAGT+AGG - chr1_2:67183534-67183553 Msa0086460:CDS 35.0%
AGGAGAACAAGATCATATAC+TGG - chr1_2:67183554-67183573 Msa0086460:CDS 35.0%
!! CTTTTAAACAGCTCTAGTAC+TGG + chr1_2:67183595-67183614 None:intergenic 35.0%
AGAGCAATTCGATTAATGCA+TGG - chr1_2:67183629-67183648 Msa0086460:five_prime_UTR 35.0%
ACAGAGACAAGCCAATGAAT+GGG + chr1_2:67181320-67181339 None:intergenic 40.0%
! AGTGTTGTTAGAGAGAGAGA+GGG + chr1_2:67181371-67181390 None:intergenic 40.0%
! TAGTGTTGTTAGAGAGAGAG+AGG + chr1_2:67181372-67181391 None:intergenic 40.0%
GTAACCTTTATTCTCCATGG+CGG - chr1_2:67181397-67181416 Msa0086460:three_prime_UTR 40.0%
!! ATTGTAGGGCTTTAAGGTTG+TGG + chr1_2:67181438-67181457 None:intergenic 40.0%
!! ACAGTGTTGGGGTTGTTTTA+GGG + chr1_2:67181490-67181509 None:intergenic 40.0%
!! AACAGTGTTGGGGTTGTTTT+AGG + chr1_2:67181491-67181510 None:intergenic 40.0%
! TATGACGGAAACCTCTTAAG+GGG + chr1_2:67181520-67181539 None:intergenic 40.0%
! CTATGACGGAAACCTCTTAA+GGG + chr1_2:67181521-67181540 None:intergenic 40.0%
CTTCACCGTTTGTGTTCTAA+TGG - chr1_2:67181580-67181599 Msa0086460:intron 40.0%
CACTAACCAGATGAAAACTG+AGG - chr1_2:67181616-67181635 Msa0086460:intron 40.0%
GCAACTAAAAATTGAGGGCT+GGG + chr1_2:67181668-67181687 None:intergenic 40.0%
TGCAACTAAAAATTGAGGGC+TGG + chr1_2:67181669-67181688 None:intergenic 40.0%
TAGACATTACAGCTGCAACT+AGG + chr1_2:67181730-67181749 None:intergenic 40.0%
!! TAGCTTTGGTGTTACCTCTA+TGG - chr1_2:67181748-67181767 Msa0086460:intron 40.0%
AACAGCTAAGATTGCCATAG+AGG + chr1_2:67181765-67181784 None:intergenic 40.0%
TAGATTCTCATGGCAAATGG+AGG - chr1_2:67181790-67181809 Msa0086460:intron 40.0%
ACTCTGATACACACGTGATT+CGG - chr1_2:67181920-67181939 Msa0086460:CDS 40.0%
! GTTCCTTGGTCTGAAATGTT+TGG - chr1_2:67182044-67182063 Msa0086460:intron 40.0%
! GTATGGAATATTGGGCTAGA+TGG - chr1_2:67182185-67182204 Msa0086460:CDS 40.0%
TATGAGAGAAGAGCAATTGC+AGG + chr1_2:67182544-67182563 None:intergenic 40.0%
GCAATTGCTCTTCTCTCATA+TGG - chr1_2:67182544-67182563 Msa0086460:intron 40.0%
GACATCCTCATCTTATGACT+AGG - chr1_2:67182742-67182761 Msa0086460:intron 40.0%
AAGACCCTAGTCATAAGATG+AGG + chr1_2:67182750-67182769 None:intergenic 40.0%
TCATCTTATGACTAGGGTCT+TGG - chr1_2:67182749-67182768 Msa0086460:intron 40.0%
TGACTAGGGTCTTGGAATTA+CGG - chr1_2:67182757-67182776 Msa0086460:CDS 40.0%
GTCTTGGAATTACGGTGTTT+GGG - chr1_2:67182765-67182784 Msa0086460:CDS 40.0%
TCCATCATGGACAAACATGT+AGG + chr1_2:67182795-67182814 None:intergenic 40.0%
!! CATGTTTGTCCATGATGGAT+TGG - chr1_2:67182796-67182815 Msa0086460:CDS 40.0%
GTTCATAAGAGATTCCCTGT+GGG - chr1_2:67182818-67182837 Msa0086460:intron 40.0%
CTTTGAATTTGTCCGAATGG+TGG + chr1_2:67183056-67183075 None:intergenic 40.0%
CACCATTCGGACAAATTCAA+AGG - chr1_2:67183054-67183073 Msa0086460:intron 40.0%
CCATTCGGACAAATTCAAAG+GGG - chr1_2:67183056-67183075 Msa0086460:intron 40.0%
!! AAATTCAAAGGGGTGCCATA+TGG - chr1_2:67183066-67183085 Msa0086460:intron 40.0%
! GTGCCATATGGACTCTTTTT+AGG - chr1_2:67183078-67183097 Msa0086460:intron 40.0%
GGTCCTAAAAAGAGTCCATA+TGG + chr1_2:67183084-67183103 None:intergenic 40.0%
!!! TGGACTCTTTTTAGGACCAA+AGG - chr1_2:67183086-67183105 Msa0086460:intron 40.0%
AAGAAGAGGGAATGTGAATG+TGG + chr1_2:67183116-67183135 None:intergenic 40.0%
ACATTCACATTCCCTCTTCT+TGG - chr1_2:67183115-67183134 Msa0086460:intron 40.0%
CGCTAGTTGAGTAGTACTTA+TGG - chr1_2:67183324-67183343 Msa0086460:CDS 40.0%
GGTGCTAATAACACATTGCT+TGG - chr1_2:67183467-67183486 Msa0086460:CDS 40.0%
AAAGGAGAGAAGGGATTGGA+TGG + chr1_2:67181295-67181314 None:intergenic 45.0%
GAATGGGTGAAAGGAGAGAA+GGG + chr1_2:67181304-67181323 None:intergenic 45.0%
TGAATGGGTGAAAGGAGAGA+AGG + chr1_2:67181305-67181324 None:intergenic 45.0%
CTCTCCTTTCACCCATTCAT+TGG - chr1_2:67181306-67181325 Msa0086460:three_prime_UTR 45.0%
CAAGCCAATGAATGGGTGAA+AGG + chr1_2:67181313-67181332 None:intergenic 45.0%
GACAGAGACAAGCCAATGAA+TGG + chr1_2:67181321-67181340 None:intergenic 45.0%
GATGAGTGGGAAATGAAGGT+TGG + chr1_2:67181349-67181368 None:intergenic 45.0%
GAGGAGATTGTAGGGCTTTA+AGG + chr1_2:67181444-67181463 None:intergenic 45.0%
!!! TTGGGGTTGTTTTAGGGGAA+GGG + chr1_2:67181484-67181503 None:intergenic 45.0%
!!! CAGTGTTGGGGTTGTTTTAG+GGG + chr1_2:67181489-67181508 None:intergenic 45.0%
! ATGACGGAAACCTCTTAAGG+GGG + chr1_2:67181519-67181538 None:intergenic 45.0%
! GCTATGACGGAAACCTCTTA+AGG + chr1_2:67181522-67181541 None:intergenic 45.0%
! GCAGCTGTAATGTCTAGCTT+TGG - chr1_2:67181734-67181753 Msa0086460:intron 45.0%
! ATGATAGGGTACTAGTGGAG+AGG - chr1_2:67182022-67182041 Msa0086460:intron 45.0%
GTGCCAAACATTTCAGACCA+AGG + chr1_2:67182050-67182069 None:intergenic 45.0%
TGGGAAGACTGGTGAAGAAT+CGG + chr1_2:67182264-67182283 None:intergenic 45.0%
TCACATCATCGACCAAGAGA+GGG - chr1_2:67182475-67182494 Msa0086460:CDS 45.0%
! TTTAACAAGGGATTGGTGCC+TGG - chr1_2:67182571-67182590 Msa0086460:intron 45.0%
GGTCTTGGAATTACGGTGTT+TGG - chr1_2:67182764-67182783 Msa0086460:CDS 45.0%
GCCTACATGTTTGTCCATGA+TGG - chr1_2:67182791-67182810 Msa0086460:CDS 45.0%
GGTTCATAAGAGATTCCCTG+TGG - chr1_2:67182817-67182836 Msa0086460:intron 45.0%
GCAGCAACTCTTGTGAAGTA+GGG + chr1_2:67182860-67182879 None:intergenic 45.0%
AGCAGCAACTCTTGTGAAGT+AGG + chr1_2:67182861-67182880 None:intergenic 45.0%
!! GGGATCTAATTTGGTGCCTT+TGG - chr1_2:67183009-67183028 Msa0086460:intron 45.0%
TTGTTTGCAGCTCCACCATT+CGG - chr1_2:67183041-67183060 Msa0086460:intron 45.0%
CCCCTTTGAATTTGTCCGAA+TGG + chr1_2:67183059-67183078 None:intergenic 45.0%
ATGTGAATGTGGCTGACCTT+TGG + chr1_2:67183105-67183124 None:intergenic 45.0%
AGTGTGCTCGTAGCCAAATT+TGG - chr1_2:67183432-67183451 Msa0086460:CDS 45.0%
CACATTGCTTGGCTGACATA+TGG - chr1_2:67183478-67183497 Msa0086460:CDS 45.0%
GTGCAGGAAGTTGAAGAAGT+GGG - chr1_2:67183500-67183519 Msa0086460:CDS 45.0%
AGGAAGTTGAAGAAGTGGGA+GGG - chr1_2:67183504-67183523 Msa0086460:CDS 45.0%
GAGAGAAGGGATTGGATGGA+TGG + chr1_2:67181291-67181310 None:intergenic 50.0%
GGTGAAAGGAGAGAAGGGAT+TGG + chr1_2:67181299-67181318 None:intergenic 50.0%
GAGGGATGAGTGGGAAATGA+AGG + chr1_2:67181353-67181372 None:intergenic 50.0%
AGAGAGAGAGAGGGATGAGT+GGG + chr1_2:67181362-67181381 None:intergenic 50.0%
TAGAGAGAGAGAGGGATGAG+TGG + chr1_2:67181363-67181382 None:intergenic 50.0%
TCAGCCGCCATGGAGAATAA+AGG + chr1_2:67181404-67181423 None:intergenic 50.0%
!! GTAGGGCTTTAAGGTTGTGG+CGG + chr1_2:67181435-67181454 None:intergenic 50.0%
GAGGGTTGGAGGAGATTGTA+GGG + chr1_2:67181452-67181471 None:intergenic 50.0%
TGAGGGTTGGAGGAGATTGT+AGG + chr1_2:67181453-67181472 None:intergenic 50.0%
AAGGGGAAGAAGTTGAGGGT+TGG + chr1_2:67181466-67181485 None:intergenic 50.0%
!!! TGGGGTTGTTTTAGGGGAAG+GGG + chr1_2:67181483-67181502 None:intergenic 50.0%
!!! GTTGGGGTTGTTTTAGGGGA+AGG + chr1_2:67181485-67181504 None:intergenic 50.0%
AGGGGGTGAAGAACAGTGTT+GGG + chr1_2:67181502-67181521 None:intergenic 50.0%
AAGGGGGTGAAGAACAGTGT+TGG + chr1_2:67181503-67181522 None:intergenic 50.0%
CTGTTCTTCACCCCCTTAAG+AGG - chr1_2:67181506-67181525 Msa0086460:intron 50.0%
TGAGGGCTGGGTTTACTGTT+AGG + chr1_2:67181656-67181675 None:intergenic 50.0%
GTACTAGTGGAGAGGTTCCT+TGG - chr1_2:67182030-67182049 Msa0086460:intron 50.0%
TACAGCAGCACCAACTGAGA+GGG + chr1_2:67182078-67182097 None:intergenic 50.0%
TTACAGCAGCACCAACTGAG+AGG + chr1_2:67182079-67182098 None:intergenic 50.0%
! GATGGGCTCATGAGGTTCTA+TGG - chr1_2:67182203-67182222 Msa0086460:CDS 50.0%
TTCTATGGCATGCTTCCCTG+TGG - chr1_2:67182218-67182237 Msa0086460:CDS 50.0%
GTCACATCATCGACCAAGAG+AGG - chr1_2:67182474-67182493 Msa0086460:CDS 50.0%
AGCTCAAATGGTCCCTCTCT+TGG + chr1_2:67182490-67182509 None:intergenic 50.0%
AAGTAGGGCACGTTGGCAAT+GGG + chr1_2:67182845-67182864 None:intergenic 50.0%
TCTTGTGAAGTAGGGCACGT+TGG + chr1_2:67182852-67182871 None:intergenic 50.0%
GGTGCAGGAAGTTGAAGAAG+TGG - chr1_2:67183499-67183518 Msa0086460:CDS 50.0%
CAGGAAGTTGAAGAAGTGGG+AGG - chr1_2:67183503-67183522 Msa0086460:CDS 50.0%
GGGAAGAAGTTGAGGGTTGG+AGG + chr1_2:67181463-67181482 None:intergenic 55.0%
GGGGAAGGGGAAGAAGTTGA+GGG + chr1_2:67181470-67181489 None:intergenic 55.0%
AGGGGAAGGGGAAGAAGTTG+AGG + chr1_2:67181471-67181490 None:intergenic 55.0%
GGGGGTGAAGAACAGTGTTG+GGG + chr1_2:67181501-67181520 None:intergenic 55.0%
GGGCTGGGTTTACTGTTAGG+AGG + chr1_2:67181653-67181672 None:intergenic 55.0%
GGCACATTTGCCCTCTCAGT+TGG - chr1_2:67182065-67182084 Msa0086460:intron 55.0%
! TTGGGCTAGATGGGCTCATG+AGG - chr1_2:67182195-67182214 Msa0086460:CDS 55.0%
TTCCCTGTGGCACATGCATG+AGG - chr1_2:67182231-67182250 Msa0086460:intron 55.0%
GACCTCATGCATGTGCCACA+GGG + chr1_2:67182236-67182255 None:intergenic 55.0%
AGACCTCATGCATGTGCCAC+AGG + chr1_2:67182237-67182256 None:intergenic 55.0%
! TTGGTGCCTGGTCTCTGCTT+TGG - chr1_2:67182583-67182602 Msa0086460:intron 55.0%
ACTGCACCAAAGCAGAGACC+AGG + chr1_2:67182592-67182611 None:intergenic 55.0%
GAAGTAGGGCACGTTGGCAA+TGG + chr1_2:67182846-67182865 None:intergenic 55.0%
GCTTGGCTGACATATGGTGC+AGG - chr1_2:67183484-67183503 Msa0086460:CDS 55.0%
GGTGGAAAGTTCAGCCGCCA+TGG + chr1_2:67181414-67181433 None:intergenic 60.0%
!! GGGCTTTAAGGTTGTGGCGG+TGG + chr1_2:67181432-67181451 None:intergenic 60.0%
CGTTGGCAATGGGACCCACA+GGG + chr1_2:67182835-67182854 None:intergenic 60.0%
ACGTTGGCAATGGGACCCAC+AGG + chr1_2:67182836-67182855 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67181217 67183786 67181217 ID=Msa0086460;Name=Msa0086460
chr1_2 mRNA 67181217 67183786 67181217 ID=Msa0086460-mRNA-1;Parent=Msa0086460;Name=Msa0086460-mRNA-1;_AED=0.11;_eAED=0.11;_QI=196|1|1|1|1|1|7|203|310
chr1_2 exon 67181217 67181497 67181217 ID=Msa0086460-mRNA-1:exon:22717;Parent=Msa0086460-mRNA-1
chr1_2 exon 67181896 67181952 67181896 ID=Msa0086460-mRNA-1:exon:22716;Parent=Msa0086460-mRNA-1
chr1_2 exon 67182114 67182239 67182114 ID=Msa0086460-mRNA-1:exon:22715;Parent=Msa0086460-mRNA-1
chr1_2 exon 67182394 67182528 67182394 ID=Msa0086460-mRNA-1:exon:22714;Parent=Msa0086460-mRNA-1
chr1_2 exon 67182751 67182822 67182751 ID=Msa0086460-mRNA-1:exon:22713;Parent=Msa0086460-mRNA-1
chr1_2 exon 67182909 67182974 67182909 ID=Msa0086460-mRNA-1:exon:22712;Parent=Msa0086460-mRNA-1
chr1_2 exon 67183192 67183786 67183192 ID=Msa0086460-mRNA-1:exon:22711;Parent=Msa0086460-mRNA-1
chr1_2 five_prime_UTR 67183591 67183786 67183591 ID=Msa0086460-mRNA-1:five_prime_utr;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67183192 67183590 67183192 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67182909 67182974 67182909 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67182751 67182822 67182751 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67182394 67182528 67182394 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67182114 67182239 67182114 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67181896 67181952 67181896 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 CDS 67181420 67181497 67181420 ID=Msa0086460-mRNA-1:cds;Parent=Msa0086460-mRNA-1
chr1_2 three_prime_UTR 67181217 67181419 67181217 ID=Msa0086460-mRNA-1:three_prime_utr;Parent=Msa0086460-mRNA-1
Gene Sequence

>Msa0086460

ATGGCGGCTGAACTTTCCACCGCCACAACCTTAAAGCCCTACAATCTCCTCCAACCCTCAACTTCTTCCCCTTCCCCTAAAACAACCCCAACACTGTTCTTCACCCCCTTAAGAGGTTTCCGTCATAGCAAAATCCTTCAAACCCAAAGAACAAGAAAATCAACACGCTTCACCGTTTGTGTTCTAATGGAAGATCCAAAACACACTAACCAGATGAAAACTGAGGAAGAAATAGAACCTCCTAACAGTAAACCCAGCCCTCAATTTTTAGTTGCACAAAAATTGGCGAGAAAGAAGTCTCAAAGATTCACTTACCTAGTTGCAGCTGTAATGTCTAGCTTTGGTGTTACCTCTATGGCAATCTTAGCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTACTAGTGGAGAGGTTCCTTGGTCTGAAATGTTTGGCACATTTGCCCTCTCAGTTGGTGCTGCTGTAGGTATGGAATATTGGGCTAGATGGGCTCATGAGGTTCTATGGCATGCTTCCCTGTGGCACATGCATGAGTCACATCATCGACCAAGAGAGGGACCATTTGAGCTTAATGATGTTTTCGCTATAATCAACGCTGTTCCTGCAATTGCTCTTCTCTCATATGGTTTTTTTAACAAGGGATTGGTGCCTGGTCTCTGCTTTGGTGCAGGTCTTGGAATTACGGTGTTTGGGATTGCCTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCACAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAAAGGGGTGCCATATGGACTCTTTTTAGGACCAAAGGAAGTTGAAGAAGTGGGAGGGATAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAACAAGATCATATACTGGCTCATGA

Protein sequence

>Msa0086460

MAAELSTATTLKPYNLLQPSTSSPSPKTTPTLFFTPLRGFRHSKILQTQRTRKSTRFTVCVLMEDPKHTNQMKTEEEIEPPNSKPSPQFLVAQKLARKKSQRFTYLVAAVMSSFGVTSMAILAVYYRFSWQMEGTSGEVPWSEMFGTFALSVGAAVGMEYWARWAHEVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPKEVEEVGGIEELEKEISRRTRSYTGS*