AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170640 MtrunA17_Chr1g0188221 87.047 386 10 3 1 365 1 367 0.0 647
Msa0170640 MtrunA17_Chr1g0188231 79.328 387 39 4 1 365 1 368 0.0 568
Msa0170640 MtrunA17_Chr6g0476321 69.974 383 74 4 4 365 44 406 0.0 525
Msa0170640 MtrunA17_Chr3g0117581 31.514 403 195 12 11 363 519 890 2.48e-43 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170640 AT4G35360.2 66.841 383 86 4 4 365 3 365 3.85e-177 496
Msa0170640 AT4G35360.1 66.841 383 86 4 4 365 3 365 3.85e-177 496
Msa0170640 AT2G17340.1 66.580 383 87 4 4 365 3 365 4.30e-175 491
Msa0170640 AT2G17320.1 63.325 379 98 4 8 365 1 359 8.41e-163 460
Msa0170640 AT2G17320.2 65.882 340 96 3 8 347 1 320 8.50e-153 434
Msa0170640 AT4G35360.3 72.137 262 50 2 125 365 9 268 1.35e-129 372
Msa0170640 AT4G32180.1 30.829 386 189 11 36 362 530 896 5.84e-42 157
Msa0170640 AT4G32180.2 32.463 268 147 7 36 288 530 778 3.19e-36 140
Msa0170640 AT4G32180.3 32.463 268 147 7 36 288 530 778 3.19e-36 140

Find 107 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAGGGATACCTAGTATT+TGG 0.193542 1_4:-54893025 None:intergenic
TGAAGAAGAGAGTAGTAATA+AGG 0.229713 1_4:+54892393 Msa0170640:five_prime_UTR
TTAGACATTCATATTAATTA+AGG 0.234827 1_4:+54892442 Msa0170640:five_prime_UTR
AACCTTAATTGGATAAAATA+TGG 0.262193 1_4:-54897324 None:intergenic
GACGAACAACATTCTCAAAT+AGG 0.282309 1_4:-54894711 None:intergenic
TTCTGCCTTGTAAAAGAATC+AGG 0.323112 1_4:-54897074 None:intergenic
GCTTTGAGTGCAGGTTGTTT+TGG 0.323869 1_4:+54895893 Msa0170640:intron
CGACTTGAGAATTTAGTTAG+AGG 0.325458 1_4:+54894763 Msa0170640:CDS
AATGGTGCATGCTGAGTATT+TGG 0.337934 1_4:-54893708 None:intergenic
ACAAACCTCCGTCAACATTA+AGG 0.338704 1_4:+54892586 Msa0170640:five_prime_UTR
GATGATTCACCTTAGGAGTT+TGG 0.339687 1_4:-54892494 None:intergenic
ATGAATTTGTTTGATTATCA+AGG 0.355835 1_4:+54897271 Msa0170640:three_prime_UTR
AGTGCTGCGTGAAATGAAAA+TGG 0.362268 1_4:-54892538 None:intergenic
GAGTAAGAAGTCGTGGAAAA+AGG 0.372519 1_4:+54895254 Msa0170640:CDS
GAAGAAGAGAGTAGTAATAA+GGG 0.374933 1_4:+54892394 Msa0170640:five_prime_UTR
TCATATTAATTAAGGTCATA+AGG 0.379065 1_4:+54892450 Msa0170640:five_prime_UTR
TCAGCTTTATTTGCAGCATC+AGG 0.385927 1_4:-54893948 None:intergenic
TGAGGAAGTTCTTAAAGAAC+TGG 0.388118 1_4:+54894374 Msa0170640:CDS
ACGAACAACATTCTCAAATA+GGG 0.405415 1_4:-54894710 None:intergenic
CTCTGAGAATTAACTATTTG+AGG 0.406617 1_4:+54897178 Msa0170640:three_prime_UTR
GGTGAGATTCCCTTTGTTGA+TGG 0.411077 1_4:+54893670 Msa0170640:CDS
CTCTTCTTCATAGCATTATG+TGG 0.414812 1_4:-54892380 None:intergenic
TTGGTTTCACTTTGAAAAGA+AGG 0.416111 1_4:-54892561 None:intergenic
GCAGGGAACGTATTTGATCT+TGG 0.416285 1_4:+54894793 Msa0170640:CDS
CCTTTGTTGATGGATGATAC+TGG 0.416576 1_4:+54893680 Msa0170640:CDS
AGAGGATCGCCATGACTTGC+AGG 0.416925 1_4:-54894197 None:intergenic
TCACTCCCACCGAGTTATCT+TGG 0.422428 1_4:+54893765 Msa0170640:CDS
ATAAGGGATACCTAGTATTT+GGG 0.422711 1_4:-54893024 None:intergenic
ACCTCTCAAGGTAAACGAAA+AGG 0.424773 1_4:-54894016 None:intergenic
AAATTGAATTGAGAATTTCA+TGG 0.425251 1_4:+54897154 Msa0170640:three_prime_UTR
GCTCCTTCGACGTGGGAGTC+AGG 0.432277 1_4:+54895447 Msa0170640:CDS
CTAATCTGTATATGATCAAA+TGG 0.434621 1_4:-54897124 None:intergenic
ATTGATGAATACAACGTTGT+TGG 0.436524 1_4:-54892980 None:intergenic
GGATGAAGAAGGACGTCTCT+TGG 0.448800 1_4:+54896060 Msa0170640:CDS
CATATTAATTAAGGTCATAA+GGG 0.449308 1_4:+54892451 Msa0170640:five_prime_UTR
AATGATTCTATTGAAGATGA+AGG 0.450374 1_4:+54894736 Msa0170640:CDS
GCTATGAGATGATTCACCTT+AGG 0.452198 1_4:-54892501 None:intergenic
TAGTATTTGGGAATGATGAT+TGG 0.460420 1_4:-54893012 None:intergenic
TAAGTCACATCATTGATAGA+AGG 0.480649 1_4:-54895930 None:intergenic
CGAAGGAGCTCCCTTGCAAA+TGG 0.482521 1_4:-54895433 None:intergenic
GATGAAGAAGGACGTCTCTT+GGG 0.482977 1_4:+54896061 Msa0170640:CDS
ACTCAGCATGCACCATTCCT+TGG 0.486421 1_4:+54893714 Msa0170640:CDS
CCTCTCAAGGTAAACGAAAA+GGG 0.490353 1_4:-54894015 None:intergenic
ATCATATTTGTTGATAACTC+GGG 0.491873 1_4:+54895385 Msa0170640:CDS
AGGTAAATCATTTCCAGAGT+TGG 0.492461 1_4:-54896110 None:intergenic
TATCATATTTGTTGATAACT+CGG 0.512521 1_4:+54895384 Msa0170640:CDS
TGAATTTGTTTGATTATCAA+GGG 0.513729 1_4:+54897272 Msa0170640:three_prime_UTR
TATGAATGTCTAATGCTTGT+GGG 0.514041 1_4:-54892432 None:intergenic
ATGTCTAATGCTTGTGGGGT+TGG 0.515515 1_4:-54892427 None:intergenic
TCAAGAAATTCTGCAACCTC+AGG 0.517783 1_4:-54896994 None:intergenic
GTGGCATACCTTAATGTTGA+CGG 0.525295 1_4:-54892594 None:intergenic
GTGCTGCGTGAAATGAAAAT+GGG 0.525552 1_4:-54892537 None:intergenic
CAGCATGCACCATTCCTTGG+AGG 0.526434 1_4:+54893717 Msa0170640:CDS
AATCATCATTCCCAAATACT+AGG 0.528517 1_4:+54893014 Msa0170640:five_prime_UTR
TTGCAGAATTTCTTGAGTCA+CGG 0.536535 1_4:+54897001 Msa0170640:CDS
GTGAGATCATACTTGTAGGA+GGG 0.547151 1_4:-54893812 None:intergenic
GCAGAAGCTTTCTCTAGGGA+TGG 0.550760 1_4:+54895150 Msa0170640:CDS
GCTAATTGAAATTATATCAA+AGG 0.552577 1_4:+54895959 Msa0170640:CDS
AGCTTGCAGAAGCTTTCTCT+AGG 0.552796 1_4:+54895145 Msa0170640:intron
ATTTGATCTTGGTTCTCCCC+AGG 0.554481 1_4:+54894804 Msa0170640:CDS
TGAGATCATACTTGTAGGAG+GGG 0.554989 1_4:-54893811 None:intergenic
CAGTATCATCCATCAACAAA+GGG 0.555127 1_4:-54893679 None:intergenic
CAAGGGAGCTCCTTCGACGT+GGG 0.555930 1_4:+54895440 Msa0170640:CDS
AAAATCTTCTCCCTCGACCA+TGG 0.556892 1_4:+54895196 Msa0170640:CDS
TCATCGATAATCCATGGTCG+AGG 0.558003 1_4:-54895207 None:intergenic
TTAATGTTGACGGAGGTTTG+TGG 0.559375 1_4:-54892584 None:intergenic
GGCAAGTAGTAGATCACAGT+TGG 0.571985 1_4:+54893649 Msa0170640:CDS
TGTGAGATCATACTTGTAGG+AGG 0.573650 1_4:-54893813 None:intergenic
ATAGATAGACCAAACTCCTA+AGG 0.573670 1_4:+54892485 Msa0170640:five_prime_UTR
AATGACAAGATCTACATCAC+TGG 0.576486 1_4:-54896291 None:intergenic
AAGAAAGATCCTGCAAGTCA+TGG 0.579855 1_4:+54894188 Msa0170640:CDS
TATATCAGAAGAAGAAGCAA+TGG 0.580992 1_4:+54893628 Msa0170640:intron
TCTTCTTCATAGCATTATGT+GGG 0.581867 1_4:-54892379 None:intergenic
AGAAGGGAACCTCCAAGGAA+TGG 0.582699 1_4:-54893726 None:intergenic
TGTTGACGGAGGTTTGTGGT+TGG 0.583226 1_4:-54892580 None:intergenic
TCAGATGGAGTAAGAAGTCG+TGG 0.585426 1_4:+54895247 Msa0170640:CDS
GAGGAAGTTCTTAAAGAACT+GGG 0.585672 1_4:+54894375 Msa0170640:CDS
CCAGTATCATCCATCAACAA+AGG 0.588590 1_4:-54893680 None:intergenic
ATGCTTGTGGGGTTGGACAA+TGG 0.589067 1_4:-54892420 None:intergenic
AGGAGGGGATACCACTGTCT+AGG 0.589365 1_4:-54893796 None:intergenic
GCAGGTTATTGATCTTACAA+AGG 0.592904 1_4:+54896244 Msa0170640:intron
GCTTGCAGAAGCTTTCTCTA+GGG 0.594621 1_4:+54895146 Msa0170640:intron
ATATGAATGTCTAATGCTTG+TGG 0.601057 1_4:-54892433 None:intergenic
TCAAGGTCATCGATAATCCA+TGG 0.602984 1_4:-54895213 None:intergenic
AAACCTGACTCCCACGTCGA+AGG 0.603858 1_4:-54895450 None:intergenic
CTCAAATAGTTAATTCTCAG+AGG 0.608533 1_4:-54897177 None:intergenic
TGCCAGTTAAAGGATGAAGA+AGG 0.608692 1_4:+54896049 Msa0170640:intron
TCATCAGAAGGGAACCTCCA+AGG 0.615232 1_4:-54893731 None:intergenic
GTTCTTTAAGAACTTCCTCA+CGG 0.615555 1_4:-54894371 None:intergenic
GCAAGGGAGCTCCTTCGACG+TGG 0.618163 1_4:+54895439 Msa0170640:CDS
ACTACACGTGGATCATCAGA+AGG 0.625437 1_4:-54893743 None:intergenic
TTTATCCAAGATAACTCGGT+GGG 0.627208 1_4:-54893770 None:intergenic
CATCGATAATCCATGGTCGA+GGG 0.636580 1_4:-54895206 None:intergenic
GAGATTTATCCAAGATAACT+CGG 0.639617 1_4:-54893774 None:intergenic
AGATATCTTCAAGAAAGTCA+AGG 0.640034 1_4:+54894404 Msa0170640:CDS
GAACGTACAAGGATATCAAG+AGG 0.642086 1_4:-54894215 None:intergenic
CTTACAGGTGAAACATCCTG+AGG 0.644122 1_4:+54896978 Msa0170640:intron
ATGAATGTCTAATGCTTGTG+GGG 0.665400 1_4:-54892431 None:intergenic
GCATACCTTAATGTTGACGG+AGG 0.671540 1_4:-54892591 None:intergenic
ACAGGCTGAAGAGAACGCAA+AGG 0.681920 1_4:+54894681 Msa0170640:intron
TGGATAAATCTCCTAGACAG+TGG 0.682304 1_4:+54893785 Msa0170640:CDS
AGGAAGTTCTTAAAGAACTG+GGG 0.687598 1_4:+54894376 Msa0170640:CDS
TCGGTGGGAGTGACTACACG+TGG 0.696965 1_4:-54893755 None:intergenic
TGCTGCGTGAAATGAAAATG+GGG 0.713417 1_4:-54892536 None:intergenic
GCTTCTATGTAGACTCCGTG+AGG 0.714416 1_4:+54894356 Msa0170640:intron
ATTTATCCAAGATAACTCGG+TGG 0.722264 1_4:-54893771 None:intergenic
CTACACGTGGATCATCAGAA+GGG 0.724492 1_4:-54893742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAATACTCTAAAATAT+TGG + chr1_4:54892667-54892686 Msa0170640:intron 10.0%
!!! ATTAATTTTTAGCTTTTATT+TGG + chr1_4:54893892-54893911 Msa0170640:intron 10.0%
!! ATATGAATTATTATAAATCT+TGG - chr1_4:54894647-54894666 None:intergenic 10.0%
!!! AATTAATTTCAACAAATTTT+TGG + chr1_4:54895989-54896008 Msa0170640:intron 10.0%
!! ATTAAATGTATTATAGTAAA+AGG + chr1_4:54896561-54896580 Msa0170640:intron 10.0%
!! TTAGACATTCATATTAATTA+AGG + chr1_4:54892442-54892461 Msa0170640:five_prime_UTR 15.0%
!! TAACAACATTAATGATATAA+GGG - chr1_4:54893043-54893062 None:intergenic 15.0%
!! ATAACAACATTAATGATATA+AGG - chr1_4:54893044-54893063 None:intergenic 15.0%
!!! TATATCAAACATTTTAGTAT+TGG - chr1_4:54894276-54894295 None:intergenic 15.0%
!!! AATAAATTCATTTTGAGAAA+AGG - chr1_4:54895014-54895033 None:intergenic 15.0%
!! ATAAATAAATGTCTTCTAAT+AGG - chr1_4:54895039-54895058 None:intergenic 15.0%
!!! CATAATCAATTTATTTTTCA+TGG + chr1_4:54895356-54895375 Msa0170640:intron 15.0%
!! TCATATTAATTAAGGTCATA+AGG + chr1_4:54892450-54892469 Msa0170640:five_prime_UTR 20.0%
!! CATATTAATTAAGGTCATAA+GGG + chr1_4:54892451-54892470 Msa0170640:five_prime_UTR 20.0%
!! AATTGGAAACAATATTTATC+TGG - chr1_4:54892732-54892751 None:intergenic 20.0%
!! GAAAATGAATGATATGAAAT+TGG - chr1_4:54892781-54892800 None:intergenic 20.0%
!!! GTTGGTGATAATATAATAAA+CGG - chr1_4:54892846-54892865 None:intergenic 20.0%
!! TATCATTAATGTTGTTATCA+TGG + chr1_4:54893046-54893065 Msa0170640:intron 20.0%
!! AACAATAAATTTGAATGTAG+AGG + chr1_4:54893284-54893303 Msa0170640:intron 20.0%
!! ACAATAAATTTGAATGTAGA+GGG + chr1_4:54893285-54893304 Msa0170640:intron 20.0%
!!! TTTTCAATGTCATTAAGATA+GGG + chr1_4:54894580-54894599 Msa0170640:intron 20.0%
!!! TAAATCATATAGTTCCATTT+TGG + chr1_4:54894621-54894640 Msa0170640:intron 20.0%
!!! TATCATATTTGTTGATAACT+CGG + chr1_4:54895384-54895403 Msa0170640:CDS 20.0%
!!! AAGAACATATAACTTTGTTT+TGG - chr1_4:54895538-54895557 None:intergenic 20.0%
!! ATTCATTATAAAGAACTTAG+AGG + chr1_4:54895759-54895778 Msa0170640:intron 20.0%
!!! ATTTCAAAAAGCTTTAAAAG+TGG - chr1_4:54895865-54895884 None:intergenic 20.0%
!! GCTAATTGAAATTATATCAA+AGG + chr1_4:54895959-54895978 Msa0170640:CDS 20.0%
!!! AACATTTTGTTTGCTATATT+AGG + chr1_4:54896151-54896170 Msa0170640:intron 20.0%
!!! ATTGTATGCTTTTTCTATTT+GGG + chr1_4:54896346-54896365 Msa0170640:intron 20.0%
!!! TTATAAATCAATATTGACTG+TGG + chr1_4:54896473-54896492 Msa0170640:intron 20.0%
!!! ATTAAAAGTACGAAGTTTAT+TGG + chr1_4:54896595-54896614 Msa0170640:intron 20.0%
!! AAATTGAATTGAGAATTTCA+TGG + chr1_4:54897154-54897173 Msa0170640:three_prime_UTR 20.0%
!!! ATGAATTTGTTTGATTATCA+AGG + chr1_4:54897271-54897290 Msa0170640:three_prime_UTR 20.0%
!!! TGAATTTGTTTGATTATCAA+GGG + chr1_4:54897272-54897291 Msa0170640:three_prime_UTR 20.0%
!! AACCTTAATTGGATAAAATA+TGG - chr1_4:54897327-54897346 None:intergenic 20.0%
! AATTGAACATATAGTTTGAG+TGG - chr1_4:54892616-54892635 None:intergenic 25.0%
! TTATGAGCTATTAGATGAAT+TGG - chr1_4:54892749-54892768 None:intergenic 25.0%
!!! TTTTCCTAAGATTAGTTCAT+AGG + chr1_4:54892796-54892815 Msa0170640:intron 25.0%
!! AGTTCATAGGTTCATTTTAA+TGG + chr1_4:54892809-54892828 Msa0170640:intron 25.0%
! CTTCATGTTAGAATCAATAT+TGG + chr1_4:54893326-54893345 Msa0170640:intron 25.0%
! AGAGGCAAAATCAATTATAA+TGG - chr1_4:54893407-54893426 None:intergenic 25.0%
! TAACATATGAAGTGTATGTT+TGG - chr1_4:54893443-54893462 None:intergenic 25.0%
! TCACATAAAAAGTGACAATT+GGG + chr1_4:54893499-54893518 Msa0170640:intron 25.0%
!!! TTTTAGCTTTTATTTGGTAC+AGG + chr1_4:54893898-54893917 Msa0170640:intron 25.0%
! ACAAAAAAAAAAACCTCTCA+AGG - chr1_4:54894031-54894050 None:intergenic 25.0%
! AACAACAATTTGAATTACCT+AGG - chr1_4:54894100-54894119 None:intergenic 25.0%
! TTTGTGCATTCATTTCAAAA+AGG + chr1_4:54894141-54894160 Msa0170640:intron 25.0%
! ACAACGAATAAAGAGAATAA+GGG - chr1_4:54894324-54894343 None:intergenic 25.0%
! CATACAATTCTTCCAAAATT+TGG - chr1_4:54894445-54894464 None:intergenic 25.0%
! AAGAATTGTATGTGTATTTC+TGG + chr1_4:54894453-54894472 Msa0170640:intron 25.0%
!! AATGCATTCTTTTCATGATT+TGG + chr1_4:54894528-54894547 Msa0170640:intron 25.0%
!! CTTTTCAATGTCATTAAGAT+AGG + chr1_4:54894579-54894598 Msa0170640:intron 25.0%
! TTTCAATGTCATTAAGATAG+GGG + chr1_4:54894581-54894600 Msa0170640:intron 25.0%
! ATTATAAATCTTGGCCAAAA+TGG - chr1_4:54894638-54894657 None:intergenic 25.0%
! ATATATGATTTGAATGCAAC+AGG + chr1_4:54894663-54894682 Msa0170640:intron 25.0%
! AATGATTCTATTGAAGATGA+AGG + chr1_4:54894736-54894755 Msa0170640:CDS 25.0%
! TAGATAAAATCAAACTACCT+GGG - chr1_4:54894824-54894843 None:intergenic 25.0%
! ATAGATAAAATCAAACTACC+TGG - chr1_4:54894825-54894844 None:intergenic 25.0%
!! TATGTAATTTTGTTCACTTC+TGG + chr1_4:54894842-54894861 Msa0170640:intron 25.0%
!! TTTTATAACCATCTCTTTCT+CGG - chr1_4:54894929-54894948 None:intergenic 25.0%
! GAGATGGTTATAAAATTAAC+CGG + chr1_4:54894934-54894953 Msa0170640:intron 25.0%
! ATCAACTATTCATATAGTTC+CGG - chr1_4:54894956-54894975 None:intergenic 25.0%
! ATATATAATCCTCCAAACAT+TGG - chr1_4:54895078-54895097 None:intergenic 25.0%
!! ATCTGATTTTCAAAATGTCA+AGG - chr1_4:54895233-54895252 None:intergenic 25.0%
!!! TTGACATTTTGAAAATCAGA+TGG + chr1_4:54895232-54895251 Msa0170640:CDS 25.0%
! ATTGATTATGACACTATTCT+TGG - chr1_4:54895346-54895365 None:intergenic 25.0%
!!! ATCAATTTATTTTTCATGGC+AGG + chr1_4:54895360-54895379 Msa0170640:intron 25.0%
!!! ATCATATTTGTTGATAACTC+GGG + chr1_4:54895385-54895404 Msa0170640:CDS 25.0%
!! TATCTTTCAAACGTATTTTC+TGG + chr1_4:54895490-54895509 Msa0170640:intron 25.0%
! AAAAAGCCACATAATTTAAG+TGG - chr1_4:54895606-54895625 None:intergenic 25.0%
! AGTTCTTTATAATGAATTCC+AGG - chr1_4:54895756-54895775 None:intergenic 25.0%
!! TTTCTGAAAAACAATCTTAC+AGG - chr1_4:54896133-54896152 None:intergenic 25.0%
!! TCTGGTTTCTTTATAGTTTA+TGG + chr1_4:54896178-54896197 Msa0170640:intron 25.0%
!!! TAGATCTTGTCATTTTAGAA+GGG + chr1_4:54896300-54896319 Msa0170640:CDS 25.0%
!!! CATTGTATGCTTTTTCTATT+TGG + chr1_4:54896345-54896364 Msa0170640:intron 25.0%
! GATTTATAAAAGTGACAGAA+AGG - chr1_4:54896462-54896481 None:intergenic 25.0%
!!! TTCCTTTCTAGTTTCTTTTA+AGG - chr1_4:54896643-54896662 None:intergenic 25.0%
! TAACTAAATACACCTATTGA+AGG - chr1_4:54896743-54896762 None:intergenic 25.0%
! CAATAATTCTTGTCAGAAAT+TGG + chr1_4:54896765-54896784 Msa0170640:intron 25.0%
!!! TCTGTCATTATTTTTCTTAC+AGG + chr1_4:54896963-54896982 Msa0170640:intron 25.0%
! CTAATCTGTATATGATCAAA+TGG - chr1_4:54897127-54897146 None:intergenic 25.0%
!!! ATTTGAGGTAATGTTGTTTT+AGG + chr1_4:54897193-54897212 Msa0170640:three_prime_UTR 25.0%
!!! AATGTTGTTTTAGGAATAAG+AGG + chr1_4:54897202-54897221 Msa0170640:three_prime_UTR 25.0%
!!! ATGTTGTTTTAGGAATAAGA+GGG + chr1_4:54897203-54897222 Msa0170640:three_prime_UTR 25.0%
!! CTCCATATTTTATCCAATTA+AGG + chr1_4:54897322-54897341 Msa0170640:three_prime_UTR 25.0%
TCTTCTTCATAGCATTATGT+GGG - chr1_4:54892382-54892401 None:intergenic 30.0%
TGAAGAAGAGAGTAGTAATA+AGG + chr1_4:54892393-54892412 Msa0170640:five_prime_UTR 30.0%
GAAGAAGAGAGTAGTAATAA+GGG + chr1_4:54892394-54892413 Msa0170640:five_prime_UTR 30.0%
TATGAATGTCTAATGCTTGT+GGG - chr1_4:54892435-54892454 None:intergenic 30.0%
ATATGAATGTCTAATGCTTG+TGG - chr1_4:54892436-54892455 None:intergenic 30.0%
! TTGGTTTCACTTTGAAAAGA+AGG - chr1_4:54892564-54892583 None:intergenic 30.0%
TGAACCTATGAACTAATCTT+AGG - chr1_4:54892803-54892822 None:intergenic 30.0%
ATGAAGGAATACAATTCCAA+TGG - chr1_4:54892890-54892909 None:intergenic 30.0%
! TGAAATGATGATGATGATGA+AGG - chr1_4:54892906-54892925 None:intergenic 30.0%
ATTGATGAATACAACGTTGT+TGG - chr1_4:54892983-54893002 None:intergenic 30.0%
TAGTATTTGGGAATGATGAT+TGG - chr1_4:54893015-54893034 None:intergenic 30.0%
AATCATCATTCCCAAATACT+AGG + chr1_4:54893014-54893033 Msa0170640:five_prime_UTR 30.0%
ATAAGGGATACCTAGTATTT+GGG - chr1_4:54893027-54893046 None:intergenic 30.0%
TATAAGGGATACCTAGTATT+TGG - chr1_4:54893028-54893047 None:intergenic 30.0%
TCTAACATGAAGCTAGAATT+TGG - chr1_4:54893318-54893337 None:intergenic 30.0%
CATGTTAGAATCAATATTGG+AGG + chr1_4:54893329-54893348 Msa0170640:intron 30.0%
!! TGTATGTTTGGTTTCACTTT+TGG - chr1_4:54893431-54893450 None:intergenic 30.0%
GTCACATAAAAAGTGACAAT+TGG + chr1_4:54893498-54893517 Msa0170640:intron 30.0%
CAATTGGGTAAAGTTACTTA+AGG + chr1_4:54893514-54893533 Msa0170640:intron 30.0%
AAAGTAAGAGTCCTAAGAAA+AGG - chr1_4:54893569-54893588 None:intergenic 30.0%
TATATCAGAAGAAGAAGCAA+TGG + chr1_4:54893628-54893647 Msa0170640:intron 30.0%
GAGATTTATCCAAGATAACT+CGG - chr1_4:54893777-54893796 None:intergenic 30.0%
! TTTTGTGAGATCATACTTGT+AGG - chr1_4:54893819-54893838 None:intergenic 30.0%
! AAGCTGAAATTTTTGCTCAA+AGG + chr1_4:54893964-54893983 Msa0170640:CDS 30.0%
! GAAATTTTTGCTCAAAGGTT+AGG + chr1_4:54893969-54893988 Msa0170640:CDS 30.0%
CACAACGAATAAAGAGAATA+AGG - chr1_4:54894325-54894344 None:intergenic 30.0%
AGATATCTTCAAGAAAGTCA+AGG + chr1_4:54894404-54894423 Msa0170640:CDS 30.0%
! GAAACAATTCAGCCAAATTT+TGG + chr1_4:54894430-54894449 Msa0170640:intron 30.0%
!! ATGTGTATTTCTGGTTATTG+AGG + chr1_4:54894462-54894481 Msa0170640:intron 30.0%
AACATCTTGCAGAAAGAATA+TGG + chr1_4:54894497-54894516 Msa0170640:intron 30.0%
ACATCTTGCAGAAAGAATAT+GGG + chr1_4:54894498-54894517 Msa0170640:intron 30.0%
ACGAACAACATTCTCAAATA+GGG - chr1_4:54894713-54894732 None:intergenic 30.0%
! TTAGTTAGAGGAATTTTTGC+AGG + chr1_4:54894775-54894794 Msa0170640:CDS 30.0%
! TAGTTAGAGGAATTTTTGCA+GGG + chr1_4:54894776-54894795 Msa0170640:CDS 30.0%
AGATAAAATCAAACTACCTG+GGG - chr1_4:54894823-54894842 None:intergenic 30.0%
!! CAGATTTTTAAGCAAGTGTT+AGG - chr1_4:54894886-54894905 None:intergenic 30.0%
CCTTACAAATTGTCAGTATA+TGG - chr1_4:54894988-54895007 None:intergenic 30.0%
CCATATACTGACAATTTGTA+AGG + chr1_4:54894985-54895004 Msa0170640:intron 30.0%
TACAATCATATGCCAATGTT+TGG + chr1_4:54895063-54895082 Msa0170640:intron 30.0%
! TTATGTCTTCTGACGAATTT+TGG + chr1_4:54895320-54895339 Msa0170640:intron 30.0%
!! TTCAAACGTATTTTCTGGTA+TGG + chr1_4:54895495-54895514 Msa0170640:intron 30.0%
!!! TATAACTTTGTTTTGGCAGT+TGG - chr1_4:54895531-54895550 None:intergenic 30.0%
! TGTTGAAGTGTCTATATTTG+TGG + chr1_4:54895559-54895578 Msa0170640:intron 30.0%
GTTGAACCACTTAAATTATG+TGG + chr1_4:54895597-54895616 Msa0170640:intron 30.0%
!!! CAATTTTGTGTTTTAGCAGT+GGG + chr1_4:54895658-54895677 Msa0170640:intron 30.0%
!!! AATTTTGTGTTTTAGCAGTG+GGG + chr1_4:54895659-54895678 Msa0170640:intron 30.0%
TAAGTCACATCATTGATAGA+AGG - chr1_4:54895933-54895952 None:intergenic 30.0%
ACAGAGTTAGGAAAAAACTT+TGG - chr1_4:54896020-54896039 None:intergenic 30.0%
!! AATCTTTTAATTGCCAACTC+TGG + chr1_4:54896097-54896116 Msa0170640:CDS 30.0%
! TTTGCTATATTAGGAAGTTC+TGG + chr1_4:54896160-54896179 Msa0170640:intron 30.0%
TATGATGATTACTTTCTTGC+AGG + chr1_4:54896226-54896245 Msa0170640:intron 30.0%
!!! GTAGATCTTGTCATTTTAGA+AGG + chr1_4:54896299-54896318 Msa0170640:CDS 30.0%
TTTGTAGAAAGGGGAAAAAA+GGG - chr1_4:54896402-54896421 None:intergenic 30.0%
AGCCTTAAAAGAAACTAGAA+AGG + chr1_4:54896638-54896657 Msa0170640:intron 30.0%
! TCTCCAATTTTTCCTTCAAT+AGG + chr1_4:54896728-54896747 Msa0170640:intron 30.0%
ACACCTATTGAAGGAAAAAT+TGG - chr1_4:54896734-54896753 None:intergenic 30.0%
TGATTCTATGAAGATTGCAA+TGG + chr1_4:54896866-54896885 Msa0170640:intron 30.0%
! TTAAGCCTGATTCTTTTACA+AGG + chr1_4:54897069-54897088 Msa0170640:three_prime_UTR 30.0%
CTCAAATAGTTAATTCTCAG+AGG - chr1_4:54897180-54897199 None:intergenic 30.0%
! CTCTGAGAATTAACTATTTG+AGG + chr1_4:54897178-54897197 Msa0170640:three_prime_UTR 30.0%
CTCTTCTTCATAGCATTATG+TGG - chr1_4:54892383-54892402 None:intergenic 35.0%
ATGAATGTCTAATGCTTGTG+GGG - chr1_4:54892434-54892453 None:intergenic 35.0%
ATAGATAGACCAAACTCCTA+AGG + chr1_4:54892485-54892504 Msa0170640:five_prime_UTR 35.0%
! GAAAATGGGGAGTTTTTGTT+TGG - chr1_4:54892526-54892545 None:intergenic 35.0%
TTGAACTGAGTTATGCTCAA+GGG - chr1_4:54893143-54893162 None:intergenic 35.0%
TTTGAACTGAGTTATGCTCA+AGG - chr1_4:54893144-54893163 None:intergenic 35.0%
TTGAGCATAACTCAGTTCAA+AGG + chr1_4:54893143-54893162 Msa0170640:intron 35.0%
AAAGGAACATTGTGATATGC+AGG + chr1_4:54893161-54893180 Msa0170640:intron 35.0%
!! TTTGGTTTCACTTTTGGAAG+AGG - chr1_4:54893425-54893444 None:intergenic 35.0%
GGGTAAAGTTACTTAAGGAT+AGG + chr1_4:54893519-54893538 Msa0170640:intron 35.0%
CAGTATCATCCATCAACAAA+GGG - chr1_4:54893682-54893701 None:intergenic 35.0%
TTTATCCAAGATAACTCGGT+GGG - chr1_4:54893773-54893792 None:intergenic 35.0%
ATTTATCCAAGATAACTCGG+TGG - chr1_4:54893774-54893793 None:intergenic 35.0%
! ATTTTTGCTCAAAGGTTAGG+TGG + chr1_4:54893972-54893991 Msa0170640:CDS 35.0%
! ACCTGTTTCTCATAAACATC+AGG + chr1_4:54894058-54894077 Msa0170640:intron 35.0%
ATCCTTGTACGTTCTTTATC+TGG + chr1_4:54894224-54894243 Msa0170640:intron 35.0%
AATAAGGGAAAACACAGAAG+GGG - chr1_4:54894309-54894328 None:intergenic 35.0%
GAATAAGGGAAAACACAGAA+GGG - chr1_4:54894310-54894329 None:intergenic 35.0%
AGAATAAGGGAAAACACAGA+AGG - chr1_4:54894311-54894330 None:intergenic 35.0%
! GTTCTTTAAGAACTTCCTCA+CGG - chr1_4:54894374-54894393 None:intergenic 35.0%
TGAGGAAGTTCTTAAAGAAC+TGG + chr1_4:54894374-54894393 Msa0170640:CDS 35.0%
GAGGAAGTTCTTAAAGAACT+GGG + chr1_4:54894375-54894394 Msa0170640:CDS 35.0%
AGGAAGTTCTTAAAGAACTG+GGG + chr1_4:54894376-54894395 Msa0170640:CDS 35.0%
CATCTTGCAGAAAGAATATG+GGG + chr1_4:54894499-54894518 Msa0170640:intron 35.0%
AATGTCATTAAGATAGGGGA+TGG + chr1_4:54894585-54894604 Msa0170640:intron 35.0%
GACGAACAACATTCTCAAAT+AGG - chr1_4:54894714-54894733 None:intergenic 35.0%
CGACTTGAGAATTTAGTTAG+AGG + chr1_4:54894763-54894782 Msa0170640:CDS 35.0%
! TTTGTTCACTTCTGGTGTTA+TGG + chr1_4:54894850-54894869 Msa0170640:intron 35.0%
AATCATATGCCAATGTTTGG+AGG + chr1_4:54895066-54895085 Msa0170640:intron 35.0%
TGCAAGCTTCAAGAAATTGA+GGG - chr1_4:54895133-54895152 None:intergenic 35.0%
! TCGGGTGCAGATATAATTTT+AGG + chr1_4:54895403-54895422 Msa0170640:CDS 35.0%
!! TAGGTATTTTGCCATTTGCA+AGG + chr1_4:54895422-54895441 Msa0170640:CDS 35.0%
!! AGGTATTTTGCCATTTGCAA+GGG + chr1_4:54895423-54895442 Msa0170640:CDS 35.0%
!!! GCAATTTTGTGTTTTAGCAG+TGG + chr1_4:54895657-54895676 Msa0170640:intron 35.0%
!!! ATTTTGTGTTTTAGCAGTGG+GGG + chr1_4:54895660-54895679 Msa0170640:intron 35.0%
ACAATAGATCAATGTGTTGC+AGG + chr1_4:54895725-54895744 Msa0170640:intron 35.0%
! TCATGTTGATTGCCAGTTAA+AGG + chr1_4:54896039-54896058 Msa0170640:intron 35.0%
AGGTAAATCATTTCCAGAGT+TGG - chr1_4:54896113-54896132 None:intergenic 35.0%
AGTCAACTATTTGACAGCAT+CGG - chr1_4:54896204-54896223 None:intergenic 35.0%
GCAGGTTATTGATCTTACAA+AGG + chr1_4:54896244-54896263 Msa0170640:intron 35.0%
AATGACAAGATCTACATCAC+TGG - chr1_4:54896294-54896313 None:intergenic 35.0%
!!! TCTTGTCATTTTAGAAGGGA+TGG + chr1_4:54896304-54896323 Msa0170640:CDS 35.0%
CTTTGTAGAAAGGGGAAAAA+AGG - chr1_4:54896403-54896422 None:intergenic 35.0%
! ACTTCTGAGAGAGAAATATG+TGG + chr1_4:54896523-54896542 Msa0170640:intron 35.0%
AAGAAACTAGAAAGGAACAG+AGG + chr1_4:54896646-54896665 Msa0170640:intron 35.0%
AGAAACTAGAAAGGAACAGA+GGG + chr1_4:54896647-54896666 Msa0170640:intron 35.0%
TTGCAGAATTTCTTGAGTCA+CGG + chr1_4:54897001-54897020 Msa0170640:CDS 35.0%
TTCTGCCTTGTAAAAGAATC+AGG - chr1_4:54897077-54897096 None:intergenic 35.0%
GATGATTCACCTTAGGAGTT+TGG - chr1_4:54892497-54892516 None:intergenic 40.0%
GCTATGAGATGATTCACCTT+AGG - chr1_4:54892504-54892523 None:intergenic 40.0%
TGCTGCGTGAAATGAAAATG+GGG - chr1_4:54892539-54892558 None:intergenic 40.0%
GTGCTGCGTGAAATGAAAAT+GGG - chr1_4:54892540-54892559 None:intergenic 40.0%
AGTGCTGCGTGAAATGAAAA+TGG - chr1_4:54892541-54892560 None:intergenic 40.0%
TTAATGTTGACGGAGGTTTG+TGG - chr1_4:54892587-54892606 None:intergenic 40.0%
ACAAACCTCCGTCAACATTA+AGG + chr1_4:54892586-54892605 Msa0170640:five_prime_UTR 40.0%
GTGGCATACCTTAATGTTGA+CGG - chr1_4:54892597-54892616 None:intergenic 40.0%
TATCACCAACACAAACTCAC+AGG + chr1_4:54892856-54892875 Msa0170640:intron 40.0%
TTACTCTTTCAACAACCTGC+AGG + chr1_4:54892943-54892962 Msa0170640:intron 40.0%
TACTCTTTCAACAACCTGCA+GGG + chr1_4:54892944-54892963 Msa0170640:intron 40.0%
GAACATTGTGATATGCAGGT+CGG + chr1_4:54893165-54893184 Msa0170640:intron 40.0%
TGCTAGAAATTCACCACTTG+AGG - chr1_4:54893221-54893240 None:intergenic 40.0%
!! AGTGGTGAATTTCTAGCACT+AGG + chr1_4:54893223-54893242 Msa0170640:intron 40.0%
! CTTGTTTGCAGCCTTTTCTT+AGG + chr1_4:54893555-54893574 Msa0170640:intron 40.0%
CCAGTATCATCCATCAACAA+AGG - chr1_4:54893683-54893702 None:intergenic 40.0%
! CCTTTGTTGATGGATGATAC+TGG + chr1_4:54893680-54893699 Msa0170640:CDS 40.0%
AATGGTGCATGCTGAGTATT+TGG - chr1_4:54893711-54893730 None:intergenic 40.0%
TGGATAAATCTCCTAGACAG+TGG + chr1_4:54893785-54893804 Msa0170640:CDS 40.0%
TGAGATCATACTTGTAGGAG+GGG - chr1_4:54893814-54893833 None:intergenic 40.0%
GTGAGATCATACTTGTAGGA+GGG - chr1_4:54893815-54893834 None:intergenic 40.0%
TGTGAGATCATACTTGTAGG+AGG - chr1_4:54893816-54893835 None:intergenic 40.0%
!! TCAGCTTTATTTGCAGCATC+AGG - chr1_4:54893951-54893970 None:intergenic 40.0%
CCTCTCAAGGTAAACGAAAA+GGG - chr1_4:54894018-54894037 None:intergenic 40.0%
ACCTCTCAAGGTAAACGAAA+AGG - chr1_4:54894019-54894038 None:intergenic 40.0%
GCCTGATGTTTATGAGAAAC+AGG - chr1_4:54894062-54894081 None:intergenic 40.0%
AAGAAAGATCCTGCAAGTCA+TGG + chr1_4:54894188-54894207 Msa0170640:CDS 40.0%
GAACGTACAAGGATATCAAG+AGG - chr1_4:54894218-54894237 None:intergenic 40.0%
GTCCAGATAAAGAACGTACA+AGG - chr1_4:54894229-54894248 None:intergenic 40.0%
GCAAGCTTCAAGAAATTGAG+GGG - chr1_4:54895132-54895151 None:intergenic 40.0%
CTGCAAGCTTCAAGAAATTG+AGG - chr1_4:54895134-54895153 None:intergenic 40.0%
!!! TAGGGATGGAATGTCGTTTT+CGG + chr1_4:54895164-54895183 Msa0170640:CDS 40.0%
TCAAGGTCATCGATAATCCA+TGG - chr1_4:54895216-54895235 None:intergenic 40.0%
GAGTAAGAAGTCGTGGAAAA+AGG + chr1_4:54895254-54895273 Msa0170640:CDS 40.0%
GGAAAAAGGCAAGTGTCATA+TGG + chr1_4:54895268-54895287 Msa0170640:intron 40.0%
GTGTCTATATTTGTGGACAG+AGG + chr1_4:54895566-54895585 Msa0170640:intron 40.0%
!!! TTTTGTGTTTTAGCAGTGGG+GGG + chr1_4:54895661-54895680 Msa0170640:intron 40.0%
GCAATCAACATGACAGAGTT+AGG - chr1_4:54896032-54896051 None:intergenic 40.0%
TGCCAGTTAAAGGATGAAGA+AGG + chr1_4:54896049-54896068 Msa0170640:intron 40.0%
GTCCTTCTTCATCCTTTAAC+TGG - chr1_4:54896054-54896073 None:intergenic 40.0%
AAGTGACAGAAAGGAACGAA+AGG - chr1_4:54896453-54896472 None:intergenic 40.0%
AACAGAGGGAGTAGTTGATT+GGG + chr1_4:54896661-54896680 Msa0170640:intron 40.0%
ACTGACACATCTCTTATGAC+AGG + chr1_4:54896804-54896823 Msa0170640:intron 40.0%
CTGACACATCTCTTATGACA+GGG + chr1_4:54896805-54896824 Msa0170640:intron 40.0%
TCAAGAAATTCTGCAACCTC+AGG - chr1_4:54896997-54897016 None:intergenic 40.0%
ATGTCTAATGCTTGTGGGGT+TGG - chr1_4:54892430-54892449 None:intergenic 45.0%
GCATACCTTAATGTTGACGG+AGG - chr1_4:54892594-54892613 None:intergenic 45.0%
GTGAATAAGCAGGGAATCCA+GGG - chr1_4:54893199-54893218 None:intergenic 45.0%
CCACTTGAGGTGAATAAGCA+GGG - chr1_4:54893208-54893227 None:intergenic 45.0%
ACCACTTGAGGTGAATAAGC+AGG - chr1_4:54893209-54893228 None:intergenic 45.0%
GGCAAGTAGTAGATCACAGT+TGG + chr1_4:54893649-54893668 Msa0170640:CDS 45.0%
GGTGAGATTCCCTTTGTTGA+TGG + chr1_4:54893670-54893689 Msa0170640:CDS 45.0%
CTACACGTGGATCATCAGAA+GGG - chr1_4:54893745-54893764 None:intergenic 45.0%
ACTACACGTGGATCATCAGA+AGG - chr1_4:54893746-54893765 None:intergenic 45.0%
! CCCTTTTCGTTTACCTTGAG+AGG + chr1_4:54894015-54894034 Msa0170640:CDS 45.0%
GCTTGCACTGTCTTTATCCT+AGG + chr1_4:54894080-54894099 Msa0170640:intron 45.0%
CATTAAGATAGGGGATGGAG+TGG + chr1_4:54894590-54894609 Msa0170640:intron 45.0%
GCAGGGAACGTATTTGATCT+TGG + chr1_4:54894793-54894812 Msa0170640:CDS 45.0%
! ATTTGATCTTGGTTCTCCCC+AGG + chr1_4:54894804-54894823 Msa0170640:CDS 45.0%
CTCACAAACCGAGAAAGAGA+TGG + chr1_4:54894918-54894937 Msa0170640:intron 45.0%
AGCTTGCAGAAGCTTTCTCT+AGG + chr1_4:54895145-54895164 Msa0170640:intron 45.0%
GCTTGCAGAAGCTTTCTCTA+GGG + chr1_4:54895146-54895165 Msa0170640:intron 45.0%
AAAATCTTCTCCCTCGACCA+TGG + chr1_4:54895196-54895215 Msa0170640:CDS 45.0%
CATCGATAATCCATGGTCGA+GGG - chr1_4:54895209-54895228 None:intergenic 45.0%
TCATCGATAATCCATGGTCG+AGG - chr1_4:54895210-54895229 None:intergenic 45.0%
TCAGATGGAGTAAGAAGTCG+TGG + chr1_4:54895247-54895266 Msa0170640:CDS 45.0%
CACGTGCAAAACACGTCATA+TGG - chr1_4:54895638-54895657 None:intergenic 45.0%
AATGTGTTGCAGGCAATACC+TGG + chr1_4:54895735-54895754 Msa0170640:intron 45.0%
! TCTCGAATTGCTTTGAGTGC+AGG + chr1_4:54895884-54895903 Msa0170640:intron 45.0%
!! GCTTTGAGTGCAGGTTGTTT+TGG + chr1_4:54895893-54895912 Msa0170640:intron 45.0%
GATGAAGAAGGACGTCTCTT+GGG + chr1_4:54896061-54896080 Msa0170640:CDS 45.0%
GAACAGAGGGAGTAGTTGAT+TGG + chr1_4:54896660-54896679 Msa0170640:intron 45.0%
CTTACAGGTGAAACATCCTG+AGG + chr1_4:54896978-54896997 Msa0170640:intron 45.0%
!! TTATTAATAATTTATTTATG+TGG - chr1_4:54892654-54892673 None:intergenic 5.0%
ATGCTTGTGGGGTTGGACAA+TGG - chr1_4:54892423-54892442 None:intergenic 50.0%
TGTTGACGGAGGTTTGTGGT+TGG - chr1_4:54892583-54892602 None:intergenic 50.0%
CAGCACCTGTGAGTTTGTGT+TGG - chr1_4:54892864-54892883 None:intergenic 50.0%
CAACACAAACTCACAGGTGC+TGG + chr1_4:54892862-54892881 Msa0170640:intron 50.0%
GAACAGAGAGTTAACCCTGC+AGG - chr1_4:54892961-54892980 None:intergenic 50.0%
GGTGAATAAGCAGGGAATCC+AGG - chr1_4:54893200-54893219 None:intergenic 50.0%
CCCTGCTTATTCACCTCAAG+TGG + chr1_4:54893205-54893224 Msa0170640:intron 50.0%
ACTCAGCATGCACCATTCCT+TGG + chr1_4:54893714-54893733 Msa0170640:CDS 50.0%
AGAAGGGAACCTCCAAGGAA+TGG - chr1_4:54893729-54893748 None:intergenic 50.0%
TCATCAGAAGGGAACCTCCA+AGG - chr1_4:54893734-54893753 None:intergenic 50.0%
TCACTCCCACCGAGTTATCT+TGG + chr1_4:54893765-54893784 Msa0170640:CDS 50.0%
GCTTCTATGTAGACTCCGTG+AGG + chr1_4:54894356-54894375 Msa0170640:intron 50.0%
ACAGGCTGAAGAGAACGCAA+AGG + chr1_4:54894681-54894700 Msa0170640:intron 50.0%
! GCAGAAGCTTTCTCTAGGGA+TGG + chr1_4:54895150-54895169 Msa0170640:CDS 50.0%
GGGAAGGATGAGGTGGATAA+TGG + chr1_4:54895681-54895700 Msa0170640:intron 50.0%
GGATGAAGAAGGACGTCTCT+TGG + chr1_4:54896060-54896079 Msa0170640:CDS 50.0%
! CCGCTAGGCTTTGTAGAAAG+GGG - chr1_4:54896411-54896430 None:intergenic 50.0%
CCCCTTTCTACAAAGCCTAG+CGG + chr1_4:54896408-54896427 Msa0170640:intron 50.0%
! GCCGCTAGGCTTTGTAGAAA+GGG - chr1_4:54896412-54896431 None:intergenic 50.0%
GTTGTGTGAATTTCGCCGCT+AGG - chr1_4:54896426-54896445 None:intergenic 50.0%
ACATCTCTTATGACAGGGCG+CGG + chr1_4:54896810-54896829 Msa0170640:intron 50.0%
CAGCATGCACCATTCCTTGG+AGG + chr1_4:54893717-54893736 Msa0170640:CDS 55.0%
AGGAGGGGATACCACTGTCT+AGG - chr1_4:54893799-54893818 None:intergenic 55.0%
! AGAGGATCGCCATGACTTGC+AGG - chr1_4:54894200-54894219 None:intergenic 55.0%
CGAAGGAGCTCCCTTGCAAA+TGG - chr1_4:54895436-54895455 None:intergenic 55.0%
AAACCTGACTCCCACGTCGA+AGG - chr1_4:54895453-54895472 None:intergenic 55.0%
!!! GTGTTTTAGCAGTGGGGGGA+AGG + chr1_4:54895665-54895684 Msa0170640:intron 55.0%
! CGCCGCTAGGCTTTGTAGAA+AGG - chr1_4:54896413-54896432 None:intergenic 55.0%
!! CTCACAGGTGCTGGAGCCAT+TGG + chr1_4:54892871-54892890 Msa0170640:intron 60.0%
GCAGGTCGGAGTTTGAACCC+TGG + chr1_4:54893179-54893198 Msa0170640:intron 60.0%
TCGGTGGGAGTGACTACACG+TGG - chr1_4:54893758-54893777 None:intergenic 60.0%
CAAGGGAGCTCCTTCGACGT+GGG + chr1_4:54895440-54895459 Msa0170640:CDS 60.0%
TAGCAGTGGGGGGAAGGATG+AGG + chr1_4:54895671-54895690 Msa0170640:intron 60.0%
GCAAGGGAGCTCCTTCGACG+TGG + chr1_4:54895439-54895458 Msa0170640:CDS 65.0%
GCTCCTTCGACGTGGGAGTC+AGG + chr1_4:54895447-54895466 Msa0170640:CDS 65.0%
CAGTGGGGGGAAGGATGAGG+TGG + chr1_4:54895674-54895693 Msa0170640:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54892340 54897350 54892340 ID=Msa0170640;Name=Msa0170640
chr1_4 mRNA 54892340 54897350 54892340 ID=Msa0170640-mRNA-1;Parent=Msa0170640;Name=Msa0170640-mRNA-1;_AED=0.37;_eAED=0.37;_QI=350|0.75|0.84|1|0.83|0.76|13|291|365
chr1_4 exon 54892340 54892607 54892340 ID=Msa0170640-mRNA-1:exon:16396;Parent=Msa0170640-mRNA-1
chr1_4 exon 54892965 54893035 54892965 ID=Msa0170640-mRNA-1:exon:16397;Parent=Msa0170640-mRNA-1
chr1_4 exon 54893636 54893822 54893636 ID=Msa0170640-mRNA-1:exon:16398;Parent=Msa0170640-mRNA-1
chr1_4 exon 54893920 54894036 54893920 ID=Msa0170640-mRNA-1:exon:16399;Parent=Msa0170640-mRNA-1
chr1_4 exon 54894163 54894229 54894163 ID=Msa0170640-mRNA-1:exon:16400;Parent=Msa0170640-mRNA-1
chr1_4 exon 54894357 54894425 54894357 ID=Msa0170640-mRNA-1:exon:16401;Parent=Msa0170640-mRNA-1
chr1_4 exon 54894685 54894825 54894685 ID=Msa0170640-mRNA-1:exon:16402;Parent=Msa0170640-mRNA-1
chr1_4 exon 54895147 54895281 54895147 ID=Msa0170640-mRNA-1:exon:16403;Parent=Msa0170640-mRNA-1
chr1_4 exon 54895382 54895468 54895382 ID=Msa0170640-mRNA-1:exon:16404;Parent=Msa0170640-mRNA-1
chr1_4 exon 54895906 54895980 54895906 ID=Msa0170640-mRNA-1:exon:16405;Parent=Msa0170640-mRNA-1
chr1_4 exon 54896055 54896132 54896055 ID=Msa0170640-mRNA-1:exon:16406;Parent=Msa0170640-mRNA-1
chr1_4 exon 54896248 54896325 54896248 ID=Msa0170640-mRNA-1:exon:16407;Parent=Msa0170640-mRNA-1
chr1_4 exon 54896985 54897350 54896985 ID=Msa0170640-mRNA-1:exon:16408;Parent=Msa0170640-mRNA-1
chr1_4 five_prime_UTR 54892340 54892607 54892340 ID=Msa0170640-mRNA-1:five_prime_utr;Parent=Msa0170640-mRNA-1
chr1_4 five_prime_UTR 54892965 54893035 54892965 ID=Msa0170640-mRNA-1:five_prime_utr;Parent=Msa0170640-mRNA-1
chr1_4 five_prime_UTR 54893636 54893646 54893636 ID=Msa0170640-mRNA-1:five_prime_utr;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54893647 54893822 54893647 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54893920 54894036 54893920 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54894163 54894229 54894163 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54894357 54894425 54894357 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54894685 54894825 54894685 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54895147 54895281 54895147 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54895382 54895468 54895382 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54895906 54895980 54895906 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54896055 54896132 54896055 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54896248 54896325 54896248 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 CDS 54896985 54897059 54896985 ID=Msa0170640-mRNA-1:cds;Parent=Msa0170640-mRNA-1
chr1_4 three_prime_UTR 54897060 54897350 54897060 ID=Msa0170640-mRNA-1:three_prime_utr;Parent=Msa0170640-mRNA-1
Gene Sequence

>Msa0170640

ATGGCAAGTAGTAGATCACAGTTGGTGAGATTCCCTTTGTTGATGGATGATACTGGTACTACCAAATACTCAGCATGCACCATTCCTTGGAGGTTCCCTTCTGATGATCCACGTGTAGTCACTCCCACCGAGTTATCTTGGATAAATCTCCTAGACAGTGGTATCCCCTCCTACAAGAAGCGTGCTGAGAGTGATACTTCTGTTCCTGATGCTGCAAATAAAGCTGAAATTTTTGCTCAAAGGTTAGGTGGTCTCTTATTACTTCATTCTTCCCTTTTCGTTTACCTTGAGAGGTATGCTGAAATACTTGAAGATTTGAAGAAAGATCCTGCAAGTCATGGCGATCCTCTTGATATCCTTCTTCTATGTAGACTCCGTGAGGAAGTTCTTAAAGAACTGGGGTTCAGAGATATCTTCAAGAAAGTCAAGGCTGAAGAGAACGCAAAGGCAATCTCCCTATTTGAGAATGTTGTTCGTCTTAATGATTCTATTGAAGATGAAGGCAAGCGACTTGAGAATTTAGTTAGAGGAATTTTTGCAGGGAACGTATTTGATCTTGGTTCTCCCCAGCTTGCAGAAGCTTTCTCTAGGGATGGAATGTCGTTTTCGGCAACTTGTGAAAATCTTCTCCCTCGACCATGGATTATCGATGACCTTGACATTTTGAAAATCAGATGGAGTAAGAAGTCGTGGAAAAAGGCAAGTGTTATCATATTTGTTGATAACTCGGGTGCAGATATAATTTTAGGTATTTTGCCATTTGCAAGGGAGCTCCTTCGACGTGGGAGTCAGGTTGTTTTGGCTGCTAATGACTTACCTTCTATCAATGATGTGACTTACTCTGAGCTAATTGAAATTATATCAAAGTTAAAGGATGAAGAAGGACGTCTCTTGGGTGTCAGCACTTCAAATCTTTTAATTGCCAACTCTGGAAATGATTTACCTGTTATTGATCTTACAAAGGTGTCACAAGAGCTTGCTTCTCTTACCAGTGATGTAGATCTTGTCATTTTAGAAGGGATGGTGAAACATCCTGAGGTTGCAGAATTTCTTGAGTCACGGATGTATGACTGTGTAATCAAATACAATGAAGTTTAG

Protein sequence

>Msa0170640

MASSRSQLVRFPLLMDDTGTTKYSACTIPWRFPSDDPRVVTPTELSWINLLDSGIPSYKKRAESDTSVPDAANKAEIFAQRLGGLLLLHSSLFVYLERYAEILEDLKKDPASHGDPLDILLLCRLREEVLKELGFRDIFKKVKAEENAKAISLFENVVRLNDSIEDEGKRLENLVRGIFAGNVFDLGSPQLAEAFSRDGMSFSATCENLLPRPWIIDDLDILKIRWSKKSWKKASVIIFVDNSGADIILGILPFARELLRRGSQVVLAANDLPSINDVTYSELIEIISKLKDEEGRLLGVSTSNLLIANSGNDLPVIDLTKVSQELASLTSDVDLVILEGMVKHPEVAEFLESRMYDCVIKYNEV*