AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1182970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182970 MtrunA17_Chr8g0336791 92.025 163 9 1 1 159 15 177 1.07e-107 310
Msa1182970 MtrunA17_Chr8g0336791 81.452 124 19 1 159 278 1 124 3.09e-65 202
Msa1182970 MtrunA17_Chr8g0336831 91.411 163 10 1 1 159 15 177 3.09e-106 308
Msa1182970 MtrunA17_Chr8g0336831 80.645 124 20 1 159 278 1 124 3.94e-64 201
Msa1182970 MtrunA17_Chr8g0336781 79.755 163 29 1 1 159 50 212 4.88e-91 275
Msa1182970 MtrunA17_Chr8g0336781 84.921 126 15 1 157 278 34 159 4.77e-69 219
Msa1182970 MtrunA17_Chr8g0336861 80.368 163 28 1 1 159 15 177 9.19e-91 273
Msa1182970 MtrunA17_Chr8g0336861 87.903 124 11 1 159 278 1 124 7.04e-69 217
Msa1182970 MtrunA17_Chr8g0348081 79.141 163 29 2 1 159 15 176 2.70e-87 264
Msa1182970 MtrunA17_Chr8g0348081 84.677 124 15 1 159 278 1 124 3.51e-68 215
Msa1182970 MtrunA17_Chr8g0336851 78.261 161 30 2 1 157 15 174 1.57e-86 262
Msa1182970 MtrunA17_Chr8g0336851 86.290 124 13 1 159 278 1 124 1.21e-69 219
Msa1182970 MtrunA17_Chr8g0336631 74.390 164 36 3 1 159 15 177 1.65e-80 247
Msa1182970 MtrunA17_Chr8g0336631 86.290 124 13 1 159 278 1 124 2.91e-68 216
Msa1182970 MtrunA17_Chr8g0336761 73.620 163 38 2 1 159 15 176 9.37e-80 245
Msa1182970 MtrunA17_Chr8g0336761 85.484 124 14 1 159 278 1 124 1.91e-67 213
Msa1182970 MtrunA17_Chr4g0066121 54.245 212 88 6 1 205 15 224 1.24e-65 209
Msa1182970 MtrunA17_Chr4g0066121 73.387 124 29 1 159 278 1 124 5.68e-59 192
Msa1182970 MtrunA17_Chr2g0311761 60.241 166 57 4 1 159 20 183 2.81e-61 198
Msa1182970 MtrunA17_Chr2g0311761 69.912 113 26 3 173 278 20 131 1.34e-44 154
Msa1182970 MtrunA17_Chr2g0311831 56.627 166 63 4 1 159 20 183 1.75e-57 188
Msa1182970 MtrunA17_Chr2g0311831 63.717 113 33 3 173 278 20 131 3.40e-40 143
Msa1182970 MtrunA17_Chr2g0311921 56.707 164 62 4 1 157 6 167 1.43e-56 185
Msa1182970 MtrunA17_Chr2g0311921 62.832 113 34 3 173 278 6 117 5.00e-40 142
Msa1182970 MtrunA17_Chr8g0336751 53.374 163 67 4 2 157 47 207 2.42e-49 167
Msa1182970 MtrunA17_Chr8g0336751 52.740 146 54 6 146 278 14 157 3.19e-32 122
Msa1182970 MtrunA17_Chr1g0167911 51.515 165 71 5 1 159 7 168 2.18e-48 164
Msa1182970 MtrunA17_Chr1g0167911 60.000 110 37 3 175 278 9 117 4.00e-35 129
Msa1182970 MtrunA17_Chr1g0167951 51.266 158 69 5 5 157 11 165 1.30e-47 162
Msa1182970 MtrunA17_Chr1g0167951 60.748 107 36 3 177 278 11 116 1.67e-35 130
Msa1182970 MtrunA17_Chr1g0168001 50.296 169 69 7 1 157 7 172 1.24e-46 154
Msa1182970 MtrunA17_Chr1g0168001 54.783 115 40 3 175 278 9 122 2.61e-34 122
Msa1182970 MtrunA17_Chr2g0311861 50.617 162 59 4 1 159 16 159 1.07e-45 157
Msa1182970 MtrunA17_Chr2g0311861 60.000 100 31 4 160 252 4 101 4.20e-27 107
Msa1182970 MtrunA17_Chr1g0167961 50.000 166 73 6 1 159 22 184 1.43e-45 157
Msa1182970 MtrunA17_Chr1g0167961 59.091 110 38 3 175 278 24 132 8.14e-34 126
Msa1182970 MtrunA17_Chr8g0354261 46.746 169 77 5 3 161 22 187 7.56e-41 145
Msa1182970 MtrunA17_Chr8g0354261 51.754 114 43 3 175 278 22 133 2.75e-26 106
Msa1182970 MtrunA17_Chr8g0354241 45.509 167 78 5 3 159 22 185 5.11e-40 142
Msa1182970 MtrunA17_Chr8g0354241 51.754 114 43 3 175 278 22 133 1.18e-26 107
Msa1182970 MtrunA17_Chr1g0187821 42.515 167 80 6 3 157 18 180 8.36e-38 136
Msa1182970 MtrunA17_Chr1g0187821 44.737 114 52 4 175 278 18 130 1.98e-25 103
Msa1182970 MtrunA17_Chr8g0335411 41.104 163 88 4 3 159 22 182 3.67e-37 135
Msa1182970 MtrunA17_Chr8g0335411 49.541 109 50 2 175 278 22 130 2.96e-28 111
Msa1182970 MtrunA17_Chr7g0235951 42.073 164 87 5 2 159 21 182 4.47e-37 135
Msa1182970 MtrunA17_Chr7g0235951 49.550 111 51 4 173 278 20 130 5.93e-26 105
Msa1182970 MtrunA17_Chr1g0187811 44.186 172 75 6 3 157 134 301 1.79e-36 135
Msa1182970 MtrunA17_Chr1g0187811 44.526 137 53 6 162 278 118 251 1.07e-26 108
Msa1182970 MtrunA17_Chr7g0247991 41.212 165 85 5 3 159 22 182 6.60e-36 132
Msa1182970 MtrunA17_Chr7g0247991 51.376 109 48 3 175 278 22 130 8.89e-28 110
Msa1182970 MtrunA17_Chr7g0225881 39.286 168 86 4 1 157 15 177 2.84e-35 130
Msa1182970 MtrunA17_Chr7g0225881 43.750 112 56 1 173 277 15 126 1.29e-23 98.6
Msa1182970 MtrunA17_Chr1g0187831 39.378 193 100 7 3 182 19 207 4.61e-34 127
Msa1182970 MtrunA17_Chr1g0187831 42.609 115 55 3 175 278 19 133 1.77e-22 95.5
Msa1182970 MtrunA17_Chr8g0364161 40.000 160 88 4 2 155 21 178 4.68e-34 122
Msa1182970 MtrunA17_Chr8g0364161 45.161 124 50 4 168 278 12 130 1.56e-27 105
Msa1182970 MtrunA17_Chr8g0364471 39.752 161 89 5 3 157 22 180 1.05e-33 125
Msa1182970 MtrunA17_Chr8g0364471 44.355 124 61 4 163 278 7 130 1.54e-27 109
Msa1182970 MtrunA17_Chr7g0236011 40.994 161 87 5 3 157 22 180 1.25e-33 125
Msa1182970 MtrunA17_Chr7g0236011 44.037 109 56 2 175 278 22 130 1.55e-22 95.5
Msa1182970 MtrunA17_Chr2g0311701 38.037 163 91 4 2 156 21 181 1.48e-33 125
Msa1182970 MtrunA17_Chr2g0311701 40.708 113 58 3 174 278 21 132 4.98e-21 91.7
Msa1182970 MtrunA17_Chr4g0055591 41.615 161 79 4 5 157 16 169 4.00e-33 124
Msa1182970 MtrunA17_Chr4g0055591 51.402 107 44 3 177 278 16 119 7.05e-28 110
Msa1182970 MtrunA17_Chr2g0311711 39.264 163 89 4 2 156 19 179 4.97e-33 124
Msa1182970 MtrunA17_Chr2g0311711 42.478 113 56 3 174 278 19 130 3.70e-21 91.7
Msa1182970 MtrunA17_Chr6g0472861 41.765 170 84 5 1 157 15 182 5.41e-33 124
Msa1182970 MtrunA17_Chr6g0472861 46.957 115 51 1 173 277 15 129 6.38e-23 96.7
Msa1182970 MtrunA17_Chr4g0011311 39.877 163 90 5 3 159 22 182 5.84e-33 122
Msa1182970 MtrunA17_Chr4g0011311 45.238 126 61 3 161 278 5 130 1.46e-28 110
Msa1182970 MtrunA17_Chr2g0311681 38.788 165 87 5 2 156 15 175 5.91e-32 121
Msa1182970 MtrunA17_Chr2g0311681 43.750 128 62 4 159 278 1 126 8.61e-25 101
Msa1182970 MtrunA17_Chr2g0311691 40.000 165 85 6 2 156 15 175 2.94e-31 119
Msa1182970 MtrunA17_Chr2g0311691 46.094 128 59 5 159 278 1 126 6.24e-24 99.4
Msa1182970 MtrunA17_Chr8g0362741 39.869 153 78 6 3 153 22 162 4.93e-29 111
Msa1182970 MtrunA17_Chr8g0362741 44.628 121 51 4 163 278 7 116 9.62e-22 92.0
Msa1182970 MtrunA17_Chr4g0066991 48.718 117 52 4 170 278 14 130 5.09e-27 107
Msa1182970 MtrunA17_Chr4g0066991 36.196 163 76 6 3 159 22 162 2.19e-25 103
Msa1182970 MtrunA17_Chr7g0266651 36.076 158 95 3 5 157 15 171 1.31e-25 103
Msa1182970 MtrunA17_Chr7g0266651 41.509 106 57 2 177 277 15 120 7.68e-20 87.8
Msa1182970 MtrunA17_Chr1g0167931 53.061 98 39 3 175 266 9 105 2.41e-25 102
Msa1182970 MtrunA17_Chr1g0167931 36.364 165 58 5 1 159 7 130 6.52e-22 93.2
Msa1182970 MtrunA17_Chr1g0184241 37.267 161 92 3 3 157 23 180 4.41e-25 102
Msa1182970 MtrunA17_Chr1g0184241 44.444 108 56 2 175 278 23 130 1.12e-22 95.9
Msa1182970 MtrunA17_Chr2g0311741 39.860 143 76 5 25 159 2 142 1.23e-24 100
Msa1182970 MtrunA17_Chr2g0311741 44.444 72 33 2 212 278 21 90 6.81e-11 62.0
Msa1182970 MtrunA17_Chr1g0161081 36.025 161 90 4 5 157 28 183 1.27e-24 101
Msa1182970 MtrunA17_Chr1g0161081 39.623 106 60 1 177 278 28 133 1.54e-19 87.0
Msa1182970 MtrunA17_Chr1g0161111 36.025 161 90 4 5 157 87 242 1.85e-24 101
Msa1182970 MtrunA17_Chr1g0161111 35.385 130 79 2 153 278 64 192 1.49e-20 90.5
Msa1182970 MtrunA17_Chr1g0161041 37.267 161 88 4 5 157 51 206 1.13e-23 99.0
Msa1182970 MtrunA17_Chr1g0161041 37.405 131 78 1 152 278 26 156 1.42e-20 90.5
Msa1182970 MtrunA17_Chr2g0311751 40.984 122 66 3 40 157 21 140 3.10e-23 93.2
Msa1182970 MtrunA17_Chr2g0311751 46.479 71 33 2 212 278 21 90 9.40e-13 65.1
Msa1182970 MtrunA17_Chr7g0235981 35.897 156 70 5 7 161 12 138 6.86e-23 95.9
Msa1182970 MtrunA17_Chr7g0235991 31.214 173 106 6 28 189 1 171 1.60e-19 84.0
Msa1182970 MtrunA17_Chr7g0235991 40.625 64 35 1 218 278 21 84 9.62e-11 60.1
Msa1182970 MtrunA17_Chr2g0311621 38.947 95 56 2 185 277 21 115 1.24e-14 68.9
Msa1182970 MtrunA17_Chr7g0242551 35.398 113 62 4 177 278 6 118 2.22e-14 72.4
Msa1182970 MtrunA17_Chr7g0242551 26.590 173 115 5 1 162 2 173 4.53e-11 62.4
Msa1182970 MtrunA17_Chr2g0311641 39.583 96 54 3 185 277 21 115 9.18e-14 67.8
Msa1182970 MtrunA17_Chr2g0311641 34.091 132 74 6 12 135 20 146 1.41e-11 61.6
Msa1182970 MtrunA17_Chr2g0311631 39.583 96 54 3 185 277 21 115 1.20e-12 67.4
Msa1182970 MtrunA17_Chr8g0375661 43.939 66 31 2 218 278 52 116 2.01e-11 61.2
Msa1182970 MtrunA17_Chr5g0420891 32.632 95 62 1 186 278 12 106 2.72e-11 60.8
Msa1182970 MtrunA17_Chr5g0423201 36.082 97 58 3 185 278 12 107 2.92e-11 63.2
Msa1182970 MtrunA17_Chr3g0093741 39.604 101 51 3 185 278 17 114 3.25e-11 62.8
Msa1182970 MtrunA17_Chr3g0126741 33.077 130 69 4 158 278 3 123 4.37e-11 62.8
Msa1182970 MtrunA17_Chr3g0093751 38.614 101 52 3 185 278 17 114 4.85e-11 62.4
Msa1182970 MtrunA17_Chr5g0423211 34.375 96 61 1 185 278 12 107 5.02e-11 62.4
Msa1182970 MtrunA17_Chr5g0421041 32.979 94 63 0 185 278 12 105 6.19e-11 62.0
Msa1182970 MtrunA17_Chr2g0311821 29.851 134 74 5 36 163 2 121 7.38e-11 58.9
Msa1182970 MtrunA17_Chr8g0375641 43.077 65 33 1 218 278 52 116 7.64e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182970 AT5G59540.2 52.121 165 67 6 3 157 14 176 3.23e-48 162
Msa1182970 AT5G59540.2 54.054 111 44 2 175 278 14 124 5.98e-31 117
Msa1182970 AT5G59540.1 52.121 165 67 6 3 157 14 176 1.93e-47 162
Msa1182970 AT5G59540.1 54.054 111 44 2 175 278 14 124 2.13e-30 117
Msa1182970 AT1G06640.3 47.590 166 76 3 2 157 14 178 1.63e-44 152
Msa1182970 AT1G06640.3 48.092 131 51 6 162 278 1 128 7.75e-27 106
Msa1182970 AT1G06640.2 47.590 166 76 3 2 157 14 178 1.95e-44 153
Msa1182970 AT1G06640.2 48.092 131 51 6 162 278 1 128 9.14e-27 106
Msa1182970 AT1G04350.1 50.000 168 64 7 2 157 10 169 4.40e-44 153
Msa1182970 AT1G04350.1 49.550 111 52 1 172 278 8 118 4.87e-29 113
Msa1182970 AT1G06620.2 48.148 162 75 4 5 159 18 177 5.24e-44 151
Msa1182970 AT1G06620.2 52.778 108 45 3 177 278 18 125 4.86e-28 109
Msa1182970 AT5G43440.2 45.509 167 79 3 1 157 11 175 5.31e-44 151
Msa1182970 AT5G43440.2 50.000 114 49 2 173 278 11 124 1.39e-28 110
Msa1182970 AT1G06650.1 46.386 166 78 3 2 157 14 178 5.48e-44 152
Msa1182970 AT1G06650.1 47.826 115 50 3 174 278 14 128 6.51e-26 104
Msa1182970 AT1G06640.1 47.590 166 76 3 2 157 14 178 8.72e-44 152
Msa1182970 AT1G06640.1 48.092 131 51 6 162 278 1 128 2.53e-26 106
Msa1182970 AT1G06650.2 46.386 166 78 3 2 157 14 178 2.85e-43 151
Msa1182970 AT1G06650.2 47.826 115 50 3 174 278 14 128 1.49e-25 104
Msa1182970 AT5G43440.1 45.509 167 79 3 1 157 11 175 3.67e-43 151
Msa1182970 AT5G43440.1 50.000 114 49 2 173 278 11 124 4.65e-28 110
Msa1182970 AT1G06620.1 48.148 162 75 4 5 159 18 177 5.65e-43 150
Msa1182970 AT1G06620.1 52.778 108 45 3 177 278 18 125 1.63e-27 109
Msa1182970 AT5G59530.1 50.610 164 70 8 3 157 13 174 2.02e-41 146
Msa1182970 AT5G59530.1 52.679 112 43 4 175 278 13 122 1.29e-27 109
Msa1182970 AT1G06645.1 48.684 152 68 2 2 143 27 178 3.32e-40 143
Msa1182970 AT1G06645.1 45.588 136 61 4 155 278 7 141 2.50e-27 109
Msa1182970 AT5G43450.2 43.182 176 84 6 1 166 11 180 2.12e-39 139
Msa1182970 AT5G43450.2 46.429 112 52 3 173 277 11 121 5.39e-24 98.6
Msa1182970 AT1G03410.2 46.667 165 76 5 2 156 8 170 3.30e-39 140
Msa1182970 AT1G03410.2 49.558 113 49 3 174 278 8 120 1.49e-27 109
Msa1182970 AT2G30840.2 44.242 165 80 5 2 156 9 171 5.31e-39 139
Msa1182970 AT2G30840.2 46.491 114 52 2 174 278 9 122 5.28e-25 101
Msa1182970 AT1G03410.1 46.667 165 76 5 2 156 45 207 8.47e-39 140
Msa1182970 AT1G03410.1 49.558 113 49 3 174 278 45 157 2.17e-27 109
Msa1182970 AT2G30840.3 43.902 164 82 4 2 156 9 171 8.99e-39 139
Msa1182970 AT2G30840.3 46.491 114 52 2 174 278 9 122 1.08e-24 101
Msa1182970 AT2G30840.1 43.902 164 82 4 2 156 9 171 9.43e-39 139
Msa1182970 AT2G30840.1 46.491 114 52 2 174 278 9 122 1.16e-24 101
Msa1182970 AT5G43450.1 43.182 176 84 6 1 166 11 180 1.15e-38 139
Msa1182970 AT5G43450.1 46.429 112 52 3 173 277 11 121 1.20e-23 99.0
Msa1182970 AT2G30830.1 42.331 163 88 3 2 159 9 170 1.46e-38 139
Msa1182970 AT2G30830.1 48.182 110 52 3 174 278 9 118 1.76e-25 103
Msa1182970 AT2G25450.1 44.720 161 81 4 2 156 9 167 1.54e-37 136
Msa1182970 AT2G25450.1 47.273 110 53 2 174 278 9 118 1.02e-23 99.0
Msa1182970 AT3G61400.2 41.916 167 85 4 1 156 12 177 4.65e-35 128
Msa1182970 AT3G61400.2 42.188 128 63 3 162 278 1 128 1.53e-24 100
Msa1182970 AT1G04380.2 42.236 161 70 5 2 157 13 155 5.18e-35 127
Msa1182970 AT1G04380.2 42.453 106 47 2 174 278 13 105 4.85e-20 87.4
Msa1182970 AT3G61400.1 41.916 167 85 4 1 156 12 177 1.54e-34 128
Msa1182970 AT3G61400.1 42.188 128 63 3 162 278 1 128 2.69e-24 100
Msa1182970 AT1G04380.1 42.236 161 70 5 2 157 13 155 3.12e-34 127
Msa1182970 AT1G04380.1 42.453 106 47 2 174 278 13 105 1.15e-19 87.8
Msa1182970 AT1G03400.1 39.877 163 80 4 2 156 8 160 3.64e-31 119
Msa1182970 AT1G03400.1 44.954 109 51 3 174 278 8 111 4.33e-22 94.4
Msa1182970 AT1G03400.2 39.877 163 80 4 2 156 8 160 1.02e-30 118
Msa1182970 AT1G03400.2 44.954 109 51 3 174 278 8 111 5.12e-22 94.7
Msa1182970 AT3G13610.1 39.000 100 50 4 185 278 26 120 7.57e-14 71.2
Msa1182970 AT1G55290.1 38.614 101 50 4 185 278 25 120 3.77e-12 66.2
Msa1182970 AT2G38240.1 32.381 105 66 2 178 278 4 107 4.16e-12 65.9
Msa1182970 AT3G12900.1 28.947 152 99 5 12 157 20 168 4.13e-11 63.2

Find 63 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATTATCAATATCTTTA+AGG 0.122806 8_1:+18127596 None:intergenic
CCTCGTATTTGTCTGGTTGA+TGG 0.287516 8_1:+18127656 None:intergenic
TCTTCTGGTTTGAGAGTATC+AGG 0.289608 8_1:+18130743 None:intergenic
CATACCACAGGAATCTCTTC+TGG 0.339436 8_1:+18130728 None:intergenic
ATAATTGCTATTGTAAATAA+AGG 0.349980 8_1:+18130826 None:intergenic
AAGGATGCATGTGAAACATT+AGG 0.363480 8_1:-18130977 Msa1182970:intron
TTGGCTTTCTCATATTTGTC+TGG 0.369279 8_1:+18131088 None:intergenic
GTTAGGTTTGGTTGTATCAA+TGG 0.379115 8_1:+18127780 None:intergenic
AATAACATTGCTTGTGTTGT+TGG 0.393117 8_1:+18131069 None:intergenic
TTGGCTTCCTCGTATTTGTC+TGG 0.410058 8_1:+18127649 None:intergenic
TCAAGGAAGCATGTGAAACT+TGG 0.431792 8_1:-18127540 Msa1182970:CDS
ACTATCCCTTGGTGAATACT+TGG 0.435000 8_1:+18131010 None:intergenic
ATAGCCCACCAGCACTCAAT+TGG 0.441791 8_1:-18130796 Msa1182970:CDS
GCATTTGATGAAACAAAATC+TGG 0.443417 8_1:-18131169 Msa1182970:CDS
TTGAATGTGGAATCAAGGTT+AGG 0.444552 8_1:+18127763 None:intergenic
GTTCTTGAGGAGTTGAAAGA+TGG 0.453205 8_1:-18130917 Msa1182970:CDS
GTTCTTGAGGAGGTGAAAGA+TGG 0.464397 8_1:-18127478 Msa1182970:CDS
GTTCATTGAATGTGGAATCA+AGG 0.469424 8_1:+18127758 None:intergenic
TTCTACTCATTCAAGAAGCA+TGG 0.481021 8_1:-18127806 Msa1182970:intron
AATAACATGACTTGTGTTGT+TGG 0.488088 8_1:+18127630 None:intergenic
AAGAGATTCCTGTGGTATGC+AGG 0.491788 8_1:-18130724 Msa1182970:intron
TGTGGAATCAAGGTTAGGTT+TGG 0.492547 8_1:+18127768 None:intergenic
CCCTTTGAGTGTTCTTGAGG+AGG 0.493576 8_1:-18127488 Msa1182970:CDS
CAAGGAAGCATGTGAAACTT+GGG 0.494320 8_1:-18127539 Msa1182970:CDS
AGTTGAAAGATGGGGTGAAA+AGG 0.500490 8_1:-18130907 Msa1182970:CDS
GGTTGACAATGGAATATCTC+AGG 0.504374 8_1:+18131109 None:intergenic
TTGTTGATGGAGGACTTAAG+AGG 0.512431 8_1:-18131135 Msa1182970:CDS
AACTCCTCAAGAACACTCAA+AGG 0.516232 8_1:+18130926 None:intergenic
GGTGTGAAAGGACTTGTTGA+TGG 0.516751 8_1:-18131148 Msa1182970:CDS
CATATTTGTCTGGTTGACAA+TGG 0.521322 8_1:+18131098 None:intergenic
ACTCCTCAAGAACACTCAAA+GGG 0.527377 8_1:+18130927 None:intergenic
GCCCACCAGCACTCAATTGG+CGG 0.527854 8_1:-18130793 Msa1182970:CDS
AGGAATTGTTGACGATATCA+AGG 0.530296 8_1:-18127557 Msa1182970:CDS
GAAACAAAAGCAGGTGTGAA+AGG 0.532657 8_1:-18127721 Msa1182970:CDS
TCCCGCCAATTGAGTGCTGG+TGG 0.534033 8_1:+18130791 None:intergenic
TGCTTTGCGTTCATTGAATG+TGG 0.544374 8_1:+18127750 None:intergenic
TCTACTCATTCAAGAAGCAT+GGG 0.545841 8_1:-18127805 Msa1182970:intron
AATCCCTTTGAGTGTTCTTG+AGG 0.545874 8_1:-18127491 Msa1182970:CDS
AATCCCTTTGAGTGTTCTTG+AGG 0.545874 8_1:-18130930 Msa1182970:CDS
ACCTCCTCAAGAACACTCAA+AGG 0.547379 8_1:+18127487 None:intergenic
CCTCCTCAAGAACACTCAAA+GGG 0.551009 8_1:+18127488 None:intergenic
GAAACAAAATCTGGTGTGAA+AGG 0.554447 8_1:-18131160 Msa1182970:CDS
AGGTGAAAGATGGAGTGAAG+AGG 0.558342 8_1:-18127468 Msa1182970:CDS
TTCTTGAGGAGTTGAAAGAT+GGG 0.560902 8_1:-18130916 Msa1182970:CDS
CCCACCAGCACTCAATTGGC+GGG 0.561348 8_1:-18130792 Msa1182970:CDS
CGTATTTGTCTGGTTGATGG+TGG 0.562970 8_1:+18127659 None:intergenic
GTATCCCGCCAATTGAGTGC+TGG 0.579076 8_1:+18130788 None:intergenic
TACTAGTACCTGCATACCAC+AGG 0.580193 8_1:+18130716 None:intergenic
ATATCTTTAAGGTCGATGAC+AGG 0.590653 8_1:+18127607 None:intergenic
GTGAAAGGACTTGTTGATGC+AGG 0.590786 8_1:-18127706 Msa1182970:CDS
AGGGATAGTTGAGAAAATCA+AGG 0.591230 8_1:-18130996 Msa1182970:CDS
GCATTTGATGAAACAAAAGC+AGG 0.595830 8_1:-18127730 Msa1182970:CDS
GGTTGATGGTGGAATAAGCT+TGG 0.607514 8_1:+18127670 None:intergenic
CCCGCCAATTGAGTGCTGGT+GGG 0.607979 8_1:+18130792 None:intergenic
ACATCTACAAGATCTATGAC+AGG 0.618496 8_1:+18131046 None:intergenic
AAGGAAGCATGTGAAACTTG+GGG 0.628246 8_1:-18127538 Msa1182970:CDS
TCTGGTTTGAGAGTATCAGG+TGG 0.638557 8_1:+18130746 None:intergenic
AAGATCCAAGTATTCACCAA+GGG 0.638816 8_1:-18131015 Msa1182970:CDS
AAAGATCCAAGTATTCACCA+AGG 0.675646 8_1:-18131016 Msa1182970:CDS
TCTTGAGGAGTTGAAAGATG+GGG 0.685762 8_1:-18130915 Msa1182970:CDS
CAAACCAGAAGAGATTCCTG+TGG 0.707644 8_1:-18130732 Msa1182970:CDS
GTGAAAGGACTTGTTGATGG+AGG 0.720260 8_1:-18131145 Msa1182970:CDS
CCATCAACCAGACAAATACG+AGG 0.724113 8_1:-18127656 Msa1182970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTATTTAAATT+GGG - chr8_1:18128882-18128901 Msa1182970:intron 0.0%
!!! TTTTTTTTTTTTAAAAAAAA+TGG - chr8_1:18129018-18129037 Msa1182970:intron 0.0%
!!! ACAAATTTTCTAATTATTAT+TGG - chr8_1:18128053-18128072 Msa1182970:intron 10.0%
!! AAAAAAATTATTTAAATTGG+GGG - chr8_1:18128884-18128903 Msa1182970:intron 10.0%
!! AATTAAAAAAAATAAACTCA+AGG - chr8_1:18129256-18129275 Msa1182970:intron 10.0%
!!! AATATTTTTTGTGATTTTTT+TGG - chr8_1:18129362-18129381 Msa1182970:intron 10.0%
!!! CTTATATTTTTATACATTTT+TGG + chr8_1:18130220-18130239 None:intergenic 10.0%
!! TATTATGAATTATATTCATA+AGG - chr8_1:18130431-18130450 Msa1182970:intron 10.0%
!!! AAAAGATTTATTTTATGATT+GGG + chr8_1:18130610-18130629 None:intergenic 10.0%
!!! ATAATTGCTATTGTAAATAA+AGG + chr8_1:18127799-18127818 None:intergenic 15.0%
!! AAAAAATTATTTAAATTGGG+GGG - chr8_1:18128885-18128904 Msa1182970:intron 15.0%
!! AAAAGTTAAATAAAATCAAG+AGG + chr8_1:18128976-18128995 None:intergenic 15.0%
!!! TTTTGAAATGATTGAAAAAA+AGG - chr8_1:18129043-18129062 Msa1182970:intron 15.0%
!! TCAATAAAATGTAGATAATT+AGG + chr8_1:18129073-18129092 None:intergenic 15.0%
!!! TTATCTACATTTTATTGATT+TGG - chr8_1:18129075-18129094 Msa1182970:intron 15.0%
!!! GTTTTTTATTAGTTTTGAAA+AGG - chr8_1:18129184-18129203 Msa1182970:intron 15.0%
!! ATATTAAATAGAGAGAAAAT+TGG - chr8_1:18129821-18129840 Msa1182970:intron 15.0%
!! TACTTTATATGTTTAAGAAT+TGG - chr8_1:18130303-18130322 Msa1182970:intron 15.0%
!!! GAAAAGATTTATTTTATGAT+TGG + chr8_1:18130611-18130630 None:intergenic 15.0%
!! CTTTATTATCAATATCTTTA+AGG + chr8_1:18131029-18131048 None:intergenic 15.0%
!!! TTTTTTCAAGTTGTTAATCA+TGG - chr8_1:18127669-18127688 Msa1182970:CDS 20.0%
!!! TAAGTTTTAAAGATTGATCT+AGG + chr8_1:18128279-18128298 None:intergenic 20.0%
!! GTTAGAAGAAATAAAATTTG+AGG + chr8_1:18128406-18128425 None:intergenic 20.0%
!!! CAAATTTTATTTCTTCTAAC+AGG - chr8_1:18128406-18128425 Msa1182970:intron 20.0%
!! AGAGATATAATACTAGAATA+TGG - chr8_1:18128443-18128462 Msa1182970:intron 20.0%
!! ATTTATCTTCATAAAGAACT+TGG + chr8_1:18128688-18128707 None:intergenic 20.0%
!! AAGTTCTTTATGAAGATAAA+TGG - chr8_1:18128687-18128706 Msa1182970:intron 20.0%
!! TATAAACAGAGTTATGTTAA+TGG + chr8_1:18130347-18130366 None:intergenic 20.0%
!! ATAAATATGAATATCTGTGT+GGG + chr8_1:18130414-18130433 None:intergenic 20.0%
!! AATAAATATGAATATCTGTG+TGG + chr8_1:18130415-18130434 None:intergenic 20.0%
!! AAAAACTTAGAACCTTTAAA+TGG + chr8_1:18130702-18130721 None:intergenic 20.0%
!! TGTTTAATGAGTTAGAATTA+AGG + chr8_1:18130726-18130745 None:intergenic 20.0%
!!! TTTTTTCAAGTTGTTAATCA+TGG - chr8_1:18127669-18127688 Msa1182970:CDS 20.0%
!!! AATCTTTAAAACTTATCTCC+TGG - chr8_1:18128284-18128303 Msa1182970:intron 25.0%
! AAAAAATTCTATCAGTTGGT+TGG + chr8_1:18128360-18128379 None:intergenic 25.0%
! CTTCAAAAAATTCTATCAGT+TGG + chr8_1:18128364-18128383 None:intergenic 25.0%
!!! CAACTGATAGAATTTTTTGA+AGG - chr8_1:18128362-18128381 Msa1182970:intron 25.0%
! TCCAAATCATCTAAAAGATA+TGG - chr8_1:18128529-18128548 Msa1182970:intron 25.0%
!! TCCATATCTTTTAGATGATT+TGG + chr8_1:18128533-18128552 None:intergenic 25.0%
!! TAGAGTACTACGAATATTTA+GGG + chr8_1:18128947-18128966 None:intergenic 25.0%
!!! CTACATTTTATTGATTTGGA+AGG - chr8_1:18129079-18129098 Msa1182970:intron 25.0%
!!! TTTTAAAGTAAAAAGCCAAG+TGG - chr8_1:18129207-18129226 Msa1182970:intron 25.0%
! TACACATTACAAGATTTGAA+CGG - chr8_1:18129605-18129624 Msa1182970:intron 25.0%
! AAAATTGGTATTCACAAATC+TGG - chr8_1:18129836-18129855 Msa1182970:intron 25.0%
! TATACAAATCCAACTATAGT+CGG - chr8_1:18129903-18129922 Msa1182970:intron 25.0%
! TTCACAAGTAATTACTAGTT+AGG + chr8_1:18130002-18130021 None:intergenic 25.0%
! TTTCCTTATCTTCATTATTG+TGG + chr8_1:18130481-18130500 None:intergenic 25.0%
! GTTACAGATAGAACAATTAT+TGG + chr8_1:18130659-18130678 None:intergenic 25.0%
! TTGGTATATGAACAAATATG+TGG + chr8_1:18130756-18130775 None:intergenic 25.0%
GCATTTGATGAAACAAAATC+TGG - chr8_1:18127453-18127472 Msa1182970:CDS 30.0%
AATAACATTGCTTGTGTTGT+TGG + chr8_1:18127556-18127575 None:intergenic 30.0%
AACAGAATAACCAAAGTTCA+AGG + chr8_1:18127965-18127984 None:intergenic 30.0%
TGGTTATTCTGTTTGTAGTA+CGG - chr8_1:18127972-18127991 Msa1182970:intron 30.0%
AAATGCATCATTTCACATAC+AGG - chr8_1:18128221-18128240 Msa1182970:intron 30.0%
GAAAACACATGATGAATCTA+GGG - chr8_1:18128465-18128484 Msa1182970:intron 30.0%
GAATTGTTATCAGAAGCTTT+AGG - chr8_1:18128500-18128519 Msa1182970:intron 30.0%
! AAAGATATGGATTGTACTCA+AGG - chr8_1:18128542-18128561 Msa1182970:intron 30.0%
! AAGATATGGATTGTACTCAA+GGG - chr8_1:18128543-18128562 Msa1182970:intron 30.0%
! GTAGAGTACTACGAATATTT+AGG + chr8_1:18128948-18128967 None:intergenic 30.0%
!!! TGTAGCAACGTTGTATTTTT+TGG - chr8_1:18129471-18129490 Msa1182970:intron 30.0%
!!! TGTATTTTTTGGACCTATGA+AGG - chr8_1:18129482-18129501 Msa1182970:intron 30.0%
TCTGATAATAGTTCCTTCAT+AGG + chr8_1:18129498-18129517 None:intergenic 30.0%
CAATCCTTTCTTTACAAAGT+AGG + chr8_1:18129568-18129587 None:intergenic 30.0%
CTACTTTGTAAAGAAAGGAT+TGG - chr8_1:18129566-18129585 Msa1182970:intron 30.0%
TTTGTAAAGAAAGGATTGGA+TGG - chr8_1:18129570-18129589 Msa1182970:intron 30.0%
ACACATTACAAGATTTGAAC+GGG - chr8_1:18129606-18129625 Msa1182970:intron 30.0%
AACAAGTATTCGAATGAACT+TGG - chr8_1:18129645-18129664 Msa1182970:intron 30.0%
TAGTTCATGTCATAATCTTG+TGG + chr8_1:18129703-18129722 None:intergenic 30.0%
!! GATGTTGTTTCTATTTGATG+TGG - chr8_1:18129730-18129749 Msa1182970:intron 30.0%
! GAGTTAAAGCAAGTTTTACT+TGG + chr8_1:18130079-18130098 None:intergenic 30.0%
TGCTTTAACTCAATTTCTCT+CGG - chr8_1:18130088-18130107 Msa1182970:intron 30.0%
CAACCACAATAATGAAGATA+AGG - chr8_1:18130475-18130494 Msa1182970:intron 30.0%
CACTAAAAAGACAAAGAGTT+TGG + chr8_1:18130775-18130794 None:intergenic 30.0%
! AATAACATGACTTGTGTTGT+TGG + chr8_1:18130995-18131014 None:intergenic 30.0%
CAATTCCTTGATGAATACTT+GGG + chr8_1:18131053-18131072 None:intergenic 30.0%
ACAATTCCTTGATGAATACT+TGG + chr8_1:18131054-18131073 None:intergenic 30.0%
GAAACAAAATCTGGTGTGAA+AGG - chr8_1:18127462-18127481 Msa1182970:CDS 35.0%
CATATTTGTCTGGTTGACAA+TGG + chr8_1:18127527-18127546 None:intergenic 35.0%
! TTGGCTTTCTCATATTTGTC+TGG + chr8_1:18127537-18127556 None:intergenic 35.0%
ACATCTACAAGATCTATGAC+AGG + chr8_1:18127579-18127598 None:intergenic 35.0%
AAAGATCCAAGTATTCACCA+AGG - chr8_1:18127606-18127625 Msa1182970:CDS 35.0%
AAGATCCAAGTATTCACCAA+GGG - chr8_1:18127607-18127626 Msa1182970:CDS 35.0%
! TGATTTTCTCAACTATCCCT+TGG + chr8_1:18127626-18127645 None:intergenic 35.0%
AGGGATAGTTGAGAAAATCA+AGG - chr8_1:18127626-18127645 Msa1182970:CDS 35.0%
AAGGATGCATGTGAAACATT+AGG - chr8_1:18127645-18127664 Msa1182970:CDS 35.0%
TTCTTGAGGAGTTGAAAGAT+GGG - chr8_1:18127706-18127725 Msa1182970:CDS 35.0%
TTTATGTGCTCCTTGAACTT+TGG - chr8_1:18127952-18127971 Msa1182970:intron 35.0%
AAGACCAATCTTTGAATCCA+AGG - chr8_1:18128247-18128266 Msa1182970:intron 35.0%
TTGACCTTGGATTCAAAGAT+TGG + chr8_1:18128254-18128273 None:intergenic 35.0%
! ATTGATCTAGGATTTGACCT+TGG + chr8_1:18128267-18128286 None:intergenic 35.0%
GGAAAACACATGATGAATCT+AGG - chr8_1:18128464-18128483 Msa1182970:intron 35.0%
ATTGATATAACACCTGTACC+TGG - chr8_1:18128710-18128729 Msa1182970:intron 35.0%
ATTATTTAAATTGGGGGGTC+CGG - chr8_1:18128890-18128909 Msa1182970:intron 35.0%
CTCACTTGATTGAGAAATCA+AGG - chr8_1:18129328-18129347 Msa1182970:intron 35.0%
ACTGTGGTTTCTCTGTATTT+AGG + chr8_1:18129531-18129550 None:intergenic 35.0%
TACAAAGTAGGCTACATAGT+CGG + chr8_1:18129556-18129575 None:intergenic 35.0%
GTAGCCTACTTTGTAAAGAA+AGG - chr8_1:18129561-18129580 Msa1182970:intron 35.0%
TGCTATTCTTTCATCTATGG+AGG + chr8_1:18129780-18129799 None:intergenic 35.0%
CTCTGCTATTCTTTCATCTA+TGG + chr8_1:18129783-18129802 None:intergenic 35.0%
AGTTACTAGTTAGTCGTAGA+TGG + chr8_1:18129933-18129952 None:intergenic 35.0%
TCTCGGAAACTTATCATCAT+TGG - chr8_1:18130105-18130124 Msa1182970:intron 35.0%
GGAAACTTATCATCATTGGT+CGG - chr8_1:18130109-18130128 Msa1182970:intron 35.0%
! ACAGATTGCTTCTGTCTTTT+AGG + chr8_1:18130161-18130180 None:intergenic 35.0%
!! TTTTGGACCATGCTGATTAA+CGG + chr8_1:18130203-18130222 None:intergenic 35.0%
! TTTTATGATTGGGACTTCCA+TGG + chr8_1:18130600-18130619 None:intergenic 35.0%
AGACTGATGCATCCATTTAA+AGG - chr8_1:18130687-18130706 Msa1182970:intron 35.0%
TTCTACTCATTCAAGAAGCA+TGG - chr8_1:18130816-18130835 Msa1182970:CDS 35.0%
! TCTACTCATTCAAGAAGCAT+GGG - chr8_1:18130817-18130836 Msa1182970:CDS 35.0%
! GTTAGGTTTGGTTGTATCAA+TGG + chr8_1:18130845-18130864 None:intergenic 35.0%
TTGAATGTGGAATCAAGGTT+AGG + chr8_1:18130862-18130881 None:intergenic 35.0%
GTTCATTGAATGTGGAATCA+AGG + chr8_1:18130867-18130886 None:intergenic 35.0%
GCATTTGATGAAACAAAAGC+AGG - chr8_1:18130892-18130911 Msa1182970:CDS 35.0%
!! ATATCTTTAAGGTCGATGAC+AGG + chr8_1:18131018-18131037 None:intergenic 35.0%
AAAGACCCAAGTATTCATCA+AGG - chr8_1:18131045-18131064 Msa1182970:CDS 35.0%
AGGAATTGTTGACGATATCA+AGG - chr8_1:18131065-18131084 Msa1182970:CDS 35.0%
! TTGTTGATGGAGGACTTAAG+AGG - chr8_1:18127487-18127506 Msa1182970:CDS 40.0%
GGTTGACAATGGAATATCTC+AGG + chr8_1:18127516-18127535 None:intergenic 40.0%
ACTATCCCTTGGTGAATACT+TGG + chr8_1:18127615-18127634 None:intergenic 40.0%
AATCCCTTTGAGTGTTCTTG+AGG - chr8_1:18127692-18127711 Msa1182970:CDS 40.0%
ACTCCTCAAGAACACTCAAA+GGG + chr8_1:18127698-18127717 None:intergenic 40.0%
AACTCCTCAAGAACACTCAA+AGG + chr8_1:18127699-18127718 None:intergenic 40.0%
GTTCTTGAGGAGTTGAAAGA+TGG - chr8_1:18127705-18127724 Msa1182970:CDS 40.0%
TCTTGAGGAGTTGAAAGATG+GGG - chr8_1:18127707-18127726 Msa1182970:CDS 40.0%
AGTTGAAAGATGGGGTGAAA+AGG - chr8_1:18127715-18127734 Msa1182970:CDS 40.0%
!! GGATACTTTTGCGTGTTACT+TGG - chr8_1:18127851-18127870 Msa1182970:intron 40.0%
!! TCTTCTGGTTTGAGAGTATC+AGG + chr8_1:18127882-18127901 None:intergenic 40.0%
! TCTGTTTGTAGTACGGACTA+CGG - chr8_1:18127979-18127998 Msa1182970:intron 40.0%
CTACGGACACTTCAGATTAA+AGG - chr8_1:18127996-18128015 Msa1182970:intron 40.0%
AAAACCACTGTCAGAATGCT+TGG + chr8_1:18128630-18128649 None:intergenic 40.0%
GTGCTTCTACAAGACCATAT+CGG - chr8_1:18128656-18128675 Msa1182970:intron 40.0%
TTATTTAAATTGGGGGGTCC+GGG - chr8_1:18128891-18128910 Msa1182970:intron 40.0%
!! GGGTTGGTTATATTTAGGGA+AGG - chr8_1:18128913-18128932 Msa1182970:intron 40.0%
!! TACGAGGTTTTGATCCTTCA+CGG + chr8_1:18129128-18129147 None:intergenic 40.0%
AGGATCAAAACCTCGTAGTT+CGG - chr8_1:18129131-18129150 Msa1182970:intron 40.0%
! ATTTTTAACCCCGAACTACG+AGG + chr8_1:18129144-18129163 None:intergenic 40.0%
ACCAAATCTCATTTGCCACT+TGG + chr8_1:18129225-18129244 None:intergenic 40.0%
GTGGTTTCTCTGTATTTAGG+AGG + chr8_1:18129528-18129547 None:intergenic 40.0%
!! TGAACTTGGTTAGCTTGTTG+TGG - chr8_1:18129659-18129678 Msa1182970:intron 40.0%
TTACATCAAAGCCTGACCAA+GGG - chr8_1:18130536-18130555 Msa1182970:intron 40.0%
! CTTATCCTTTTCCCTATCCA+TGG - chr8_1:18130580-18130599 Msa1182970:intron 40.0%
TGTGGAATCAAGGTTAGGTT+TGG + chr8_1:18130857-18130876 None:intergenic 40.0%
TGCTTTGCGTTCATTGAATG+TGG + chr8_1:18130875-18130894 None:intergenic 40.0%
GAAACAAAAGCAGGTGTGAA+AGG - chr8_1:18130901-18130920 Msa1182970:CDS 40.0%
! TCAAGGAAGCATGTGAAACT+TGG - chr8_1:18131082-18131101 Msa1182970:CDS 40.0%
! CAAGGAAGCATGTGAAACTT+GGG - chr8_1:18131083-18131102 Msa1182970:CDS 40.0%
! AAGGAAGCATGTGAAACTTG+GGG - chr8_1:18131084-18131103 Msa1182970:CDS 40.0%
AATCCCTTTGAGTGTTCTTG+AGG - chr8_1:18127692-18127711 Msa1182970:CDS 40.0%
!! GGTGTGAAAGGACTTGTTGA+TGG - chr8_1:18127474-18127493 Msa1182970:CDS 45.0%
!! GTGAAAGGACTTGTTGATGG+AGG - chr8_1:18127477-18127496 Msa1182970:CDS 45.0%
!! TCTGGTTTGAGAGTATCAGG+TGG + chr8_1:18127879-18127898 None:intergenic 45.0%
CAAACCAGAAGAGATTCCTG+TGG - chr8_1:18127890-18127909 Msa1182970:intron 45.0%
CATACCACAGGAATCTCTTC+TGG + chr8_1:18127897-18127916 None:intergenic 45.0%
AAGAGATTCCTGTGGTATGC+AGG - chr8_1:18127898-18127917 Msa1182970:intron 45.0%
TACTAGTACCTGCATACCAC+AGG + chr8_1:18127909-18127928 None:intergenic 45.0%
AAATTAGACAGACGCGCACA+TGG + chr8_1:18128092-18128111 None:intergenic 45.0%
ACTTATCTCCTGGTCTGACT+CGG - chr8_1:18128294-18128313 Msa1182970:intron 45.0%
TCCATTCCCCTGAAAATCGA+GGG - chr8_1:18128328-18128347 Msa1182970:intron 45.0%
! TCTTAGCCCTCGATTTTCAG+GGG + chr8_1:18128337-18128356 None:intergenic 45.0%
! GTCTTAGCCCTCGATTTTCA+GGG + chr8_1:18128338-18128357 None:intergenic 45.0%
CGGGACAAGCAGGATAATAA+TGG + chr8_1:18128583-18128602 None:intergenic 45.0%
! TCCCACAGTCAATTCTGGTT+CGG + chr8_1:18128603-18128622 None:intergenic 45.0%
GTTGTTCCCACAGTCAATTC+TGG + chr8_1:18128608-18128627 None:intergenic 45.0%
ACAACCAAGCATTCTGACAG+TGG - chr8_1:18128623-18128642 Msa1182970:intron 45.0%
CTTCTACAAGACCATATCGG+TGG - chr8_1:18128659-18128678 Msa1182970:intron 45.0%
!! ACATTAACAATGAGAGCGCC+AGG + chr8_1:18128731-18128750 None:intergenic 45.0%
GGCGCTCTCATTGTTAATGT+CGG - chr8_1:18128731-18128750 Msa1182970:intron 45.0%
!!! GTACCTGTCGCGTCATTTTT+CGG - chr8_1:18128807-18128826 Msa1182970:intron 45.0%
TTTCGGAGGTCAAGGCTATT+TGG - chr8_1:18128824-18128843 Msa1182970:intron 45.0%
TATTTAAATTGGGGGGTCCG+GGG - chr8_1:18128892-18128911 Msa1182970:intron 45.0%
!! TCCGGGGGTTGGTTATATTT+AGG - chr8_1:18128908-18128927 Msa1182970:intron 45.0%
CCCTAAATATAACCAACCCC+CGG + chr8_1:18128912-18128931 None:intergenic 45.0%
!! CCGGGGGTTGGTTATATTTA+GGG - chr8_1:18128909-18128928 Msa1182970:intron 45.0%
TTGATCCTTCACGGGTATGT+AGG + chr8_1:18129119-18129138 None:intergenic 45.0%
!! ACGAGGTTTTGATCCTTCAC+GGG + chr8_1:18129127-18129146 None:intergenic 45.0%
GGATCAAAACCTCGTAGTTC+GGG - chr8_1:18129132-18129151 Msa1182970:intron 45.0%
GATCAAAACCTCGTAGTTCG+GGG - chr8_1:18129133-18129152 Msa1182970:intron 45.0%
GCCAAGTGGCAAATGAGATT+TGG - chr8_1:18129221-18129240 Msa1182970:intron 45.0%
AAGATTTGAACGGGACAACG+TGG - chr8_1:18129615-18129634 Msa1182970:intron 45.0%
GATGGCTAACCGACTATAGT+TGG + chr8_1:18129915-18129934 None:intergenic 45.0%
TTGAGCTCCGTTAATCAGCA+TGG - chr8_1:18130193-18130212 Msa1182970:intron 45.0%
CTTACATCAAAGCCTGACCA+AGG - chr8_1:18130535-18130554 Msa1182970:intron 45.0%
TACATCAAAGCCTGACCAAG+GGG - chr8_1:18130537-18130556 Msa1182970:intron 45.0%
GACTTCCATGGATAGGGAAA+AGG + chr8_1:18130588-18130607 None:intergenic 45.0%
GATTGGGACTTCCATGGATA+GGG + chr8_1:18130594-18130613 None:intergenic 45.0%
TGATTGGGACTTCCATGGAT+AGG + chr8_1:18130595-18130614 None:intergenic 45.0%
!! GTGAAAGGACTTGTTGATGC+AGG - chr8_1:18130916-18130935 Msa1182970:CDS 45.0%
!! GGTTGATGGTGGAATAAGCT+TGG + chr8_1:18130955-18130974 None:intergenic 45.0%
!! CGTATTTGTCTGGTTGATGG+TGG + chr8_1:18130966-18130985 None:intergenic 45.0%
CCTCGTATTTGTCTGGTTGA+TGG + chr8_1:18130969-18130988 None:intergenic 45.0%
CCATCAACCAGACAAATACG+AGG - chr8_1:18130966-18130985 Msa1182970:intron 45.0%
TTGGCTTCCTCGTATTTGTC+TGG + chr8_1:18130976-18130995 None:intergenic 45.0%
CCTCCTCAAGAACACTCAAA+GGG + chr8_1:18131137-18131156 None:intergenic 45.0%
ACCTCCTCAAGAACACTCAA+AGG + chr8_1:18131138-18131157 None:intergenic 45.0%
GTTCTTGAGGAGGTGAAAGA+TGG - chr8_1:18131144-18131163 Msa1182970:CDS 45.0%
AGGTGAAAGATGGAGTGAAG+AGG - chr8_1:18131154-18131173 Msa1182970:CDS 45.0%
!! GAAAAAAAAATTATTTAAAT+TGG - chr8_1:18128881-18128900 Msa1182970:intron 5.0%
!! AAAAAAAATTATTTAAATTG+GGG - chr8_1:18128883-18128902 Msa1182970:intron 5.0%
ATAGCCCACCAGCACTCAAT+TGG - chr8_1:18127826-18127845 Msa1182970:intron 50.0%
CTTATCTCCTGGTCTGACTC+GGG - chr8_1:18128295-18128314 Msa1182970:intron 50.0%
!! ATTTTCAGGGGAATGGACCG+TGG + chr8_1:18128325-18128344 None:intergenic 50.0%
GTCCATTCCCCTGAAAATCG+AGG - chr8_1:18128327-18128346 Msa1182970:intron 50.0%
! GGTCTTAGCCCTCGATTTTC+AGG + chr8_1:18128339-18128358 None:intergenic 50.0%
!! AATTCTGGTTCGGGACAAGC+AGG + chr8_1:18128593-18128612 None:intergenic 50.0%
TCCCGAACCAGAATTGACTG+TGG - chr8_1:18128598-18128617 Msa1182970:intron 50.0%
!! CCCACAGTCAATTCTGGTTC+GGG + chr8_1:18128602-18128621 None:intergenic 50.0%
CCCGAACCAGAATTGACTGT+GGG - chr8_1:18128599-18128618 Msa1182970:intron 50.0%
GAACTTGGAGACCACCGATA+TGG + chr8_1:18128673-18128692 None:intergenic 50.0%
!!! GCGTCATTTTTCGGAGGTCA+AGG - chr8_1:18128816-18128835 Msa1182970:intron 50.0%
ATTTAAATTGGGGGGTCCGG+GGG - chr8_1:18128893-18128912 Msa1182970:intron 50.0%
ACATCAAAGCCTGACCAAGG+GGG - chr8_1:18130538-18130557 Msa1182970:intron 50.0%
CCCTTTGAGTGTTCTTGAGG+AGG - chr8_1:18127695-18127714 Msa1182970:CDS 50.0%
GTATCCCGCCAATTGAGTGC+TGG + chr8_1:18127837-18127856 None:intergenic 55.0%
TGGTTATCCCGAGTCAGACC+AGG + chr8_1:18128305-18128324 None:intergenic 55.0%
!! GGTCTGACTCGGGATAACCA+CGG - chr8_1:18128305-18128324 Msa1182970:intron 55.0%
!! GCCCTCGATTTTCAGGGGAA+TGG + chr8_1:18128332-18128351 None:intergenic 55.0%
!! ACAATGAGAGCGCCAGGTAC+AGG + chr8_1:18128725-18128744 None:intergenic 55.0%
CCTCCGAAAAATGACGCGAC+AGG + chr8_1:18128813-18128832 None:intergenic 55.0%
!!! CCTGTCGCGTCATTTTTCGG+AGG - chr8_1:18128810-18128829 Msa1182970:intron 55.0%
CTTCACGGGTATGTAGGCAG+AGG + chr8_1:18129113-18129132 None:intergenic 55.0%
CTCTGCCTACATACCCGTGA+AGG - chr8_1:18129111-18129130 Msa1182970:intron 55.0%
GCCCACCAGCACTCAATTGG+CGG - chr8_1:18127829-18127848 Msa1182970:intron 60.0%
!! CCCGCCAATTGAGTGCTGGT+GGG + chr8_1:18127833-18127852 None:intergenic 60.0%
CCCACCAGCACTCAATTGGC+GGG - chr8_1:18127830-18127849 Msa1182970:intron 60.0%
!! TCCCGCCAATTGAGTGCTGG+TGG + chr8_1:18127834-18127853 None:intergenic 60.0%
GGCTACATAGTCGGCGACTG+TGG + chr8_1:18129547-18129566 None:intergenic 60.0%
TCAAAGCCTGACCAAGGGGG+TGG - chr8_1:18130541-18130560 Msa1182970:intron 60.0%
AAATTGGGGGGTCCGGGGGT+TGG - chr8_1:18128897-18128916 Msa1182970:intron 65.0%
CTACTGCCACCCCCTTGGTC+AGG + chr8_1:18130550-18130569 None:intergenic 65.0%
CTGACCAAGGGGGTGGCAGT+AGG - chr8_1:18130548-18130567 Msa1182970:intron 65.0%
CATGCCTACTGCCACCCCCT+TGG + chr8_1:18130555-18130574 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 18127438 18131206 18127438 ID=Msa1182970;Name=Msa1182970
chr8_1 mRNA 18127438 18131206 18127438 ID=Msa1182970-mRNA-1;Parent=Msa1182970;Name=Msa1182970-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0.33|0|4|0|278
chr8_1 exon 18130978 18131206 18130978 ID=Msa1182970-mRNA-1:exon:6934;Parent=Msa1182970-mRNA-1
chr8_1 exon 18130725 18130965 18130725 ID=Msa1182970-mRNA-1:exon:6933;Parent=Msa1182970-mRNA-1
chr8_1 exon 18127590 18127813 18127590 ID=Msa1182970-mRNA-1:exon:6932;Parent=Msa1182970-mRNA-1
chr8_1 exon 18127438 18127577 18127438 ID=Msa1182970-mRNA-1:exon:6931;Parent=Msa1182970-mRNA-1
chr8_1 CDS 18130978 18131206 18130978 ID=Msa1182970-mRNA-1:cds;Parent=Msa1182970-mRNA-1
chr8_1 CDS 18130725 18130965 18130725 ID=Msa1182970-mRNA-1:cds;Parent=Msa1182970-mRNA-1
chr8_1 CDS 18127590 18127813 18127590 ID=Msa1182970-mRNA-1:cds;Parent=Msa1182970-mRNA-1
chr8_1 CDS 18127438 18127577 18127438 ID=Msa1182970-mRNA-1:cds;Parent=Msa1182970-mRNA-1
Gene Sequence

>Msa1182970

ATGAATGAACGCAAAGCATTTGATGAAACAAAATCTGGTGTGAAAGGACTTGTTGATGGAGGACTTAAGAGGATACCTGAGATATTCCATTGTCAACCAGACAAATATGAGAAAGCCAACAACACAAGCAATGTTATTCCTGTCATAGATCTTGTAGATGTTGATAATAAAGATCCAAGTATTCACCAAGGGATAGTTGAGAAAATCAAGGATGCATGTGAAACATTAGTTGTTAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGGGTGAAAAGGTTTTATGAACAAGACACAGAAGTCAAAAAAGAATTGTATACTAGAGATATGAATAGATCCTTTATTTACAATAGCAATTATGATATTTATAGCCCACCAGCACTCAATTGGCGGGATACTTTTGCGTGTTACTTGGCTCCACCTGATACTCTCAAACCAGAAGAGATTCCTGTGGTATGCAGAAGCATGGGAACCATTGATACAACCAAACCTAACCTTGATTCCACATTCAATGAACGCAAAGCATTTGATGAAACAAAAGCAGGTGTGAAAGGACTTGTTGATGCAGGAGTTGAGAAGATACCAAGCTTATTCCACCATCAACCAGACAAATACGAGGAAGCCAACAACACAAGTCATGTTATTCCTGTCATCGACCTTAAAGATATTGATAATAAAGACCCAAGAATTGTTGACGATATCAAGGAAGCATGTGAAACTTGGGGTTTTTTTCAAGTTGTTAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGGTGAAAGATGGAGTGAAGAGGTTTTATGAACAAGACACAGAAGTCAAAAAA
Protein sequence

>Msa1182970

MNERKAFDETKSGVKGLVDGGLKRIPEIFHCQPDKYEKANNTSNVIPVIDLVDVDNKDPSIHQGIVEKIKDACETLVVNHGIPLSVLEELKDGVKRFYEQDTEVKKELYTRDMNRSFIYNSNYDIYSPPALNWRDTFACYLAPPDTLKPEEIPVVCRSMGTIDTTKPNLDSTFNERKAFDETKAGVKGLVDAGVEKIPSLFHHQPDKYEEANNTSHVIPVIDLKDIDNKDPRIVDDIKEACETWGFFQVVNHGIPLSVLEEVKDGVKRFYEQDTEVKK