AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013810 MtrunA17_Chr1g0163521 91.444 374 11 3 1 356 1 371 0.0 600
Msa0013810 MtrunA17_Chr5g0436571 51.818 330 116 6 21 338 19 317 1.69e-108 320
Msa0013810 MtrunA17_Chr8g0372531 27.893 337 166 10 25 342 29 307 8.70e-31 119
Msa0013810 MtrunA17_Chr7g0269701 27.515 338 167 9 9 330 21 296 1.34e-26 107
Msa0013810 MtrunA17_Chr1g0195101 26.899 316 163 8 26 330 35 293 1.97e-20 90.5
Msa0013810 MtrunA17_Chr5g0423111 25.685 292 165 6 60 341 57 306 3.02e-18 84.7
Msa0013810 MtrunA17_Chr8g0385571 23.026 304 169 10 52 342 253 504 4.22e-12 67.0
Msa0013810 MtrunA17_Chr3g0135861 21.849 357 215 9 7 351 36 340 6.03e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013810 AT2G39970.1 54.867 339 104 5 21 343 19 324 6.34e-119 347
Msa0013810 AT5G66380.1 27.019 359 184 8 1 340 1 300 2.18e-30 118
Msa0013810 AT1G25380.1 25.347 288 158 7 62 338 63 304 6.32e-22 95.9
Msa0013810 AT1G25380.2 25.347 288 158 7 62 338 63 304 6.32e-22 95.9
Msa0013810 AT2G47490.1 28.775 351 177 11 5 340 12 304 3.18e-21 93.2
Msa0013810 AT3G05290.1 24.419 344 208 7 5 343 6 302 2.01e-18 85.5
Msa0013810 AT5G27520.1 23.837 344 210 7 5 343 8 304 1.59e-15 77.0

Find 83 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACCCTTTATTAGGTTAT+TGG 0.185556 1_1:-21446502 Msa0013810:intron
AAGCCGGTATAGTTGGATTT+TGG 0.206499 1_1:-21444026 Msa0013810:CDS
GGTCTTAAGCCTTCTCTTCT+TGG 0.216302 1_1:-21446451 Msa0013810:CDS
TACATCAAACGATAAGAAAT+TGG 0.233353 1_1:-21446939 Msa0013810:five_prime_UTR
ACTTGTATCCCCTTGCTTCT+TGG 0.242164 1_1:+21443649 None:intergenic
AGGAAAAGAAAGAAGCTTTA+AGG 0.260649 1_1:-21444403 Msa0013810:CDS
CTCATTGTAGCTGCTATTGC+CGG 0.272795 1_1:-21444967 Msa0013810:CDS
TGCTGCTTCTGTATTATTCA+TGG 0.278898 1_1:-21440811 Msa0013810:CDS
AGAGTTCATTAAAGCATCTA+AGG 0.312907 1_1:-21443685 Msa0013810:intron
TTGCTTCTTGGCAGAGCGTT+TGG 0.318384 1_1:+21443661 None:intergenic
TGTCATCCCTGCTCTAATTA+TGG 0.328813 1_1:-21443998 Msa0013810:intron
TCTTGGAACTGCTGCTTCTC+AGG 0.346908 1_1:-21446434 Msa0013810:intron
TAAGTGTTCTCTCAGTTTGT+TGG 0.348838 1_1:+21446675 None:intergenic
TCTACAAAGCCTAAACCATT+TGG 0.353256 1_1:-21444317 Msa0013810:CDS
TGTATAGTCCCAAATGGTTT+AGG 0.364147 1_1:+21444308 None:intergenic
GGTTATTGGAAATGAAGGTT+GGG 0.381820 1_1:-21446488 Msa0013810:CDS
CGAGTCACGAGAACCCATAT+TGG 0.385303 1_1:+21444817 None:intergenic
AATCCTCTTGTCATTCAAAA+AGG 0.386548 1_1:-21443505 Msa0013810:CDS
TTCAACATTGGAAGAAAAGT+TGG 0.393488 1_1:-21444351 Msa0013810:CDS
GAGTCACGAGAACCCATATT+GGG 0.394359 1_1:+21444818 None:intergenic
TACGTGAGGTGTTAGTTTAG+TGG 0.400846 1_1:-21440667 Msa0013810:three_prime_UTR
GTCAAGGCTTCAAGCAAAAC+AGG 0.402686 1_1:-21442643 Msa0013810:CDS
CTACAAAGCCTAAACCATTT+GGG 0.407495 1_1:-21444316 Msa0013810:CDS
CTCATCCCTTTATAAAAGCC+TGG 0.415845 1_1:+21440858 None:intergenic
GCTTCTGAGAGTAGCTTAGT+AGG 0.437524 1_1:-21444374 Msa0013810:CDS
AGGTTATTGGAAATGAAGGT+TGG 0.438668 1_1:-21446489 Msa0013810:CDS
AGAAGAAGTAGTTATTGTGT+TGG 0.438956 1_1:+21446628 None:intergenic
CTTAAAATGATCCGTTATGA+AGG 0.440580 1_1:-21440885 Msa0013810:CDS
TTGTTTGGTTCACGGATAAG+AGG 0.450226 1_1:+21447033 None:intergenic
TATTAGGTTATTGGAAATGA+AGG 0.455803 1_1:-21446493 Msa0013810:intron
AAACTGAGAGAACACTTAAG+AGG 0.470485 1_1:-21446670 Msa0013810:CDS
TGATGAAGTGAAACTGTGTT+TGG 0.470991 1_1:+21446900 None:intergenic
GATGGTACTGTTGGAATGTT+CGG 0.472704 1_1:-21444994 Msa0013810:CDS
CTTATCGTTTGATGTAAAAG+TGG 0.483977 1_1:+21446946 None:intergenic
GCCATAGCAAATGGTTTAGC+TGG 0.486226 1_1:-21446863 Msa0013810:CDS
TATAACGAAGCCGGTATAGT+TGG 0.486247 1_1:-21444033 Msa0013810:CDS
TTTGTTCACAAACCCAATAT+GGG 0.491857 1_1:-21444830 Msa0013810:CDS
AAACTAACCATAATTAGAGC+AGG 0.492722 1_1:+21443991 None:intergenic
GGTAAAGGAGGAGCTTGTTA+AGG 0.495294 1_1:-21440790 Msa0013810:CDS
TTACCTTGACAACTAGCAAC+GGG 0.499670 1_1:+21443433 None:intergenic
TTCTGTATTATTCATGGTAA+AGG 0.502004 1_1:-21440805 Msa0013810:CDS
GTGGGAGCAATAGCAAAACT+TGG 0.503017 1_1:-21443474 Msa0013810:CDS
GGTTTAGCTGGTGCTGGTGG+TGG 0.503052 1_1:-21446851 Msa0013810:CDS
GGTTGGGGTGGACTCTATAG+TGG 0.503801 1_1:-21446472 Msa0013810:CDS
ATCCGTTATGAAGGACTCCC+AGG 0.512939 1_1:-21440876 Msa0013810:CDS
GAGTCAAACGCCATAGCAAA+TGG 0.513995 1_1:-21446872 Msa0013810:CDS
TTATCGTTTGATGTAAAAGT+GGG 0.521059 1_1:+21446947 None:intergenic
CTTCAAGCAAAACAGGAGAT+TGG 0.521460 1_1:-21442636 Msa0013810:CDS
AAACGCTCTGCCAAGAAGCA+AGG 0.526061 1_1:-21443659 Msa0013810:CDS
AATAACTCATTAAGATACTC+AGG 0.526598 1_1:-21442609 Msa0013810:intron
TTTCCAAAATCCAACTATAC+CGG 0.529288 1_1:+21444023 None:intergenic
ACTGCATGTATAGTCCCAAA+TGG 0.529844 1_1:+21444302 None:intergenic
GGTTCTCGTGACTCGAATGC+AGG 0.537335 1_1:-21444809 Msa0013810:intron
TAGCTTAGTAGGTTCAACAT+TGG 0.540514 1_1:-21444363 Msa0013810:CDS
GGACATGGAGATGGTACTGT+TGG 0.547818 1_1:-21445003 Msa0013810:CDS
AACGCTCTGCCAAGAAGCAA+GGG 0.548373 1_1:-21443658 Msa0013810:CDS
GCAAATGGTTTAGCTGGTGC+TGG 0.549491 1_1:-21446857 Msa0013810:CDS
GCAGCAGTTCCAAGAAGAGA+AGG 0.561769 1_1:+21446442 None:intergenic
CTGTGGCTATTGCAGCTGAA+AGG 0.562091 1_1:-21445035 Msa0013810:CDS
GTTATTGGAAATGAAGGTTG+GGG 0.562835 1_1:-21446487 Msa0013810:CDS
ACCAGCTAAACCATTTGCTA+TGG 0.571212 1_1:+21446862 None:intergenic
GTACTGTTGGAATGTTCGGT+TGG 0.572059 1_1:-21444990 Msa0013810:CDS
TCATTGTAGCTGCTATTGCC+GGG 0.574084 1_1:-21444966 Msa0013810:intron
TGTATTATTCATGGTAAAGG+AGG 0.574583 1_1:-21440802 Msa0013810:CDS
TCATCCCTTTATAAAAGCCT+GGG 0.585664 1_1:+21440859 None:intergenic
GTATTGGTTACAGCTTGAAG+TGG 0.586531 1_1:+21446803 None:intergenic
AAAGAAAGAAGCTTTAAGGA+AGG 0.587121 1_1:-21444399 Msa0013810:CDS
CAAGCAAAACAGGAGATTGG+TGG 0.587692 1_1:-21442633 Msa0013810:CDS
AATGAAGTATATAACGAAGC+CGG 0.598651 1_1:-21444042 Msa0013810:CDS
AAAGTCAAAGGACATGGAGA+TGG 0.600563 1_1:-21445012 Msa0013810:CDS
GAAAGGAAAGTCAAAGGACA+TGG 0.605985 1_1:-21445018 Msa0013810:CDS
AGCCTGGGAGTCCTTCATAA+CGG 0.610166 1_1:+21440874 None:intergenic
TTTGGTTCACGGATAAGAGG+AGG 0.611202 1_1:+21447036 None:intergenic
ATTGGAAATGAAGGTTGGGG+TGG 0.611702 1_1:-21446484 Msa0013810:CDS
CTTACCTTGACAACTAGCAA+CGG 0.613509 1_1:+21443432 None:intergenic
ATACCCGTTGCTAGTTGTCA+AGG 0.615167 1_1:-21443436 Msa0013810:intron
AACTAACCATAATTAGAGCA+GGG 0.615924 1_1:+21443992 None:intergenic
GAGTTCATTAAAGCATCTAA+GGG 0.621037 1_1:-21443684 Msa0013810:intron
GCAGCTGAAAGGAAAGTCAA+AGG 0.629461 1_1:-21445024 Msa0013810:CDS
TTCACGGATAAGAGGAGGAG+AGG 0.630288 1_1:+21447041 None:intergenic
AATGGTTTAGCTGGTGCTGG+TGG 0.648458 1_1:-21446854 Msa0013810:CDS
ATATAAGTAGCTTGTACGTG+AGG 0.656165 1_1:-21440681 Msa0013810:three_prime_UTR
ACGCTCTGCCAAGAAGCAAG+GGG 0.672258 1_1:-21443657 Msa0013810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAAGAATATTTTACA+AGG - chr1_1:21440623-21440642 Msa0013810:three_prime_UTR 10.0%
!!! TTTTTTAAAAGATAAATACA+AGG + chr1_1:21442084-21442103 None:intergenic 10.0%
!!! GACTATTTTATAATTAAATT+TGG - chr1_1:21442866-21442885 Msa0013810:intron 10.0%
!!! AATCTATTTTTTTATTACAA+TGG + chr1_1:21443438-21443457 None:intergenic 10.0%
!! AAAAATATATAAAAATCCAA+AGG + chr1_1:21445079-21445098 None:intergenic 10.0%
!!! ATTTTTTTTACATTAGAAAA+GGG + chr1_1:21446699-21446718 None:intergenic 10.0%
!! ATATTGCAATGAAATATAAT+TGG + chr1_1:21440908-21440927 None:intergenic 15.0%
!! ATGAAGATATATTTATAAGT+GGG - chr1_1:21441339-21441358 Msa0013810:intron 15.0%
!!! GCTATAATTTTTTTTTTTTG+AGG + chr1_1:21441781-21441800 None:intergenic 15.0%
!! AATAAAAAAATAGATTACAC+CGG - chr1_1:21443442-21443461 Msa0013810:CDS 15.0%
!! AATCTTAAGTTCATAATATT+TGG - chr1_1:21444288-21444307 Msa0013810:intron 15.0%
!! TGAATGAAATTATATTAAGT+TGG - chr1_1:21445358-21445377 Msa0013810:intron 15.0%
!! GAATGAAATTATATTAAGTT+GGG - chr1_1:21445359-21445378 Msa0013810:intron 15.0%
!! TTACAAACAAAATAAAGAAA+TGG + chr1_1:21446024-21446043 None:intergenic 15.0%
!!! TTTGTTTGTAAACTTTTAAT+TGG - chr1_1:21446033-21446052 Msa0013810:intron 15.0%
!!! CATTTTTTTTACATTAGAAA+AGG + chr1_1:21446700-21446719 None:intergenic 15.0%
!!! TTTTTATCAAGTGTTTTGTT+TGG + chr1_1:21440610-21440629 None:intergenic 20.0%
!! TACAAGATAACTAAGAATAA+AGG + chr1_1:21440854-21440873 None:intergenic 20.0%
!!! TTGTTTCATTTCTTTTTGAT+TGG - chr1_1:21441069-21441088 Msa0013810:intron 20.0%
!!! TTTTATTATGACCCTTTATT+AGG - chr1_1:21441116-21441135 Msa0013810:intron 20.0%
!! ATTTCCAATAACCTAATAAA+GGG + chr1_1:21441130-21441149 None:intergenic 20.0%
!! TTAGATAAAAACACTTGAAA+TGG + chr1_1:21441221-21441240 None:intergenic 20.0%
!! CATGAAGATATATTTATAAG+TGG - chr1_1:21441338-21441357 Msa0013810:intron 20.0%
!! TGAAGATATATTTATAAGTG+GGG - chr1_1:21441340-21441359 Msa0013810:intron 20.0%
!!! GGAAATATTTTTTTTTAGTG+AGG + chr1_1:21441826-21441845 None:intergenic 20.0%
!! AACTTTAAACGAAAAATACT+AGG - chr1_1:21442421-21442440 Msa0013810:intron 20.0%
!! TTGACAATTAAGCATTTAAA+TGG + chr1_1:21442521-21442540 None:intergenic 20.0%
!! AGAATATGAATGAAATACTT+GGG + chr1_1:21442745-21442764 None:intergenic 20.0%
!! AAGAATATGAATGAAATACT+TGG + chr1_1:21442746-21442765 None:intergenic 20.0%
!! TTCTTATAATCTTATTATGC+AGG - chr1_1:21442761-21442780 Msa0013810:intron 20.0%
!!! TAAAAGTACTATGTAAATTC+CGG + chr1_1:21443464-21443483 None:intergenic 20.0%
!! GAATATATCAATAAGATGAT+TGG + chr1_1:21443662-21443681 None:intergenic 20.0%
!!! AGAATACTTTTAAATACAAG+TGG - chr1_1:21444018-21444037 Msa0013810:CDS 20.0%
!! ATTATGAACTTAAGATTTCT+AGG + chr1_1:21444285-21444304 None:intergenic 20.0%
!! TGAACTACATAATTAAGAAA+AGG + chr1_1:21444421-21444440 None:intergenic 20.0%
!!! TATCTAAATGACTAATTTTC+AGG - chr1_1:21444880-21444899 Msa0013810:intron 20.0%
!!! ATCTAAATGACTAATTTTCA+GGG - chr1_1:21444881-21444900 Msa0013810:intron 20.0%
!!! TGTAATACTTAATTTTCCTT+TGG - chr1_1:21445060-21445079 Msa0013810:CDS 20.0%
!! ATACATAAAAGAGTAACAAA+AGG - chr1_1:21445191-21445210 Msa0013810:intron 20.0%
!! TACATAAAAGAGTAACAAAA+GGG - chr1_1:21445192-21445211 Msa0013810:intron 20.0%
!!! AACATCTTAGAATTTTAGTT+GGG + chr1_1:21445430-21445449 None:intergenic 20.0%
!! ACAATACATTAACATTACAA+CGG - chr1_1:21445658-21445677 Msa0013810:intron 20.0%
!! AAAATAAAGAAATGGTTCAA+AGG + chr1_1:21446016-21446035 None:intergenic 20.0%
!! TATAAACCTTCAAAAGATTA+AGG - chr1_1:21446090-21446109 Msa0013810:intron 20.0%
!!! AATGATTTGTAAACATGTTA+TGG - chr1_1:21446118-21446137 Msa0013810:intron 20.0%
!! AACAAAAAAAAAATAATGGC+AGG + chr1_1:21446401-21446420 None:intergenic 20.0%
!! TTCTAATGTAAAAAAAATGC+AGG - chr1_1:21446701-21446720 Msa0013810:intron 20.0%
! TTATCGTTTGATGTAAAAGT+GGG + chr1_1:21440681-21440700 None:intergenic 25.0%
! TACATCAAACGATAAGAAAT+TGG - chr1_1:21440686-21440705 Msa0013810:three_prime_UTR 25.0%
!!! CATTGCAATATTCATTTTTC+AGG - chr1_1:21440917-21440936 Msa0013810:intron 25.0%
!! CATTTTTCTTCAGATTTTTC+AGG - chr1_1:21441034-21441053 Msa0013810:intron 25.0%
! CATTTCCAATAACCTAATAA+AGG + chr1_1:21441131-21441150 None:intergenic 25.0%
! TATTAGGTTATTGGAAATGA+AGG - chr1_1:21441132-21441151 Msa0013810:intron 25.0%
! TGATACAATCTTAAAGTTTG+TGG + chr1_1:21441644-21441663 None:intergenic 25.0%
! AAGCCTATTGAAGATTAATT+TGG - chr1_1:21441664-21441683 Msa0013810:intron 25.0%
! ATGCCAAATTAATCTTCAAT+AGG + chr1_1:21441670-21441689 None:intergenic 25.0%
!! TATTGAAGATTAATTTGGCA+TGG - chr1_1:21441669-21441688 Msa0013810:intron 25.0%
! TATCTTAGAGAAAGACAATA+AGG + chr1_1:21441847-21441866 None:intergenic 25.0%
! AGGAAAAAGAAATCAAATCA+GGG + chr1_1:21441917-21441936 None:intergenic 25.0%
! ATAAAACAAAACAACAGAAG+AGG + chr1_1:21441937-21441956 None:intergenic 25.0%
!! TGTTTTATGCCTATTAGAAT+TGG - chr1_1:21441949-21441968 Msa0013810:intron 25.0%
!! GTTTTATGCCTATTAGAATT+GGG - chr1_1:21441950-21441969 Msa0013810:intron 25.0%
!!! TCTTATAAGTCAGTTTTGTA+AGG - chr1_1:21442322-21442341 Msa0013810:intron 25.0%
!!! AATATGATGTGCTTTTGTTT+GGG - chr1_1:21442484-21442503 Msa0013810:intron 25.0%
!! CTTAATTGTCAATGTTTTCA+GGG - chr1_1:21442529-21442548 Msa0013810:intron 25.0%
!! TTCTCATATTTGTCAACTTT+TGG - chr1_1:21442844-21442863 Msa0013810:intron 25.0%
!! TTTTAAGCATTCGAAGTTTA+TGG + chr1_1:21443070-21443089 None:intergenic 25.0%
!! TATATAGTTTGTGGTAACAT+CGG + chr1_1:21443117-21443136 None:intergenic 25.0%
!! TACGCTTGACATTTTATATT+TGG - chr1_1:21443161-21443180 Msa0013810:intron 25.0%
!! GAAATTTCGATTTGATGAAA+AGG - chr1_1:21443558-21443577 Msa0013810:intron 25.0%
! ATACCTATCATGAAAATTCT+CGG + chr1_1:21443890-21443909 None:intergenic 25.0%
!! ATAAAACGAAGTACTTGATA+TGG + chr1_1:21444383-21444402 None:intergenic 25.0%
!!! AATGGACATGTATTTTGAAA+CGG + chr1_1:21444513-21444532 None:intergenic 25.0%
! AATAACTCATTAAGATACTC+AGG - chr1_1:21445016-21445035 Msa0013810:CDS 25.0%
!!! GCTTTATATTTTCAAGGATA+GGG + chr1_1:21445112-21445131 None:intergenic 25.0%
!!! AGCTTTATATTTTCAAGGAT+AGG + chr1_1:21445113-21445132 None:intergenic 25.0%
!!! TTCACAGCTTTATATTTTCA+AGG + chr1_1:21445118-21445137 None:intergenic 25.0%
! ACTTCCTTAAACAACAATTA+AGG + chr1_1:21445166-21445185 None:intergenic 25.0%
! ACATAAAAGAGTAACAAAAG+GGG - chr1_1:21445193-21445212 Msa0013810:intron 25.0%
!!! CAACATCTTAGAATTTTAGT+TGG + chr1_1:21445431-21445450 None:intergenic 25.0%
! CACTTATTATCATACTTTCA+AGG + chr1_1:21445503-21445522 None:intergenic 25.0%
!! CTTGAAAGTATGATAATAAG+TGG - chr1_1:21445501-21445520 Msa0013810:intron 25.0%
! CTACAAATGTAAAACTCTAA+TGG + chr1_1:21445898-21445917 None:intergenic 25.0%
!! CATTAGAGTTTTACATTTGT+AGG - chr1_1:21445896-21445915 Msa0013810:intron 25.0%
!!! TTGTAGGACTTATTTTTTGT+TGG - chr1_1:21445912-21445931 Msa0013810:intron 25.0%
!!! TTTTTTGTTGGCTGAAATTA+TGG - chr1_1:21445924-21445943 Msa0013810:intron 25.0%
!! TTTAAGCCTTAATCTTTTGA+AGG + chr1_1:21446099-21446118 None:intergenic 25.0%
! TTTATCTACAACTATAGTCA+AGG - chr1_1:21446242-21446261 Msa0013810:intron 25.0%
!! TATAATTTGCCACAATATCA+TGG + chr1_1:21446285-21446304 None:intergenic 25.0%
! AAATACATACTTTGACAAAG+AGG + chr1_1:21446676-21446695 None:intergenic 25.0%
! TTCTGTATTATTCATGGTAA+AGG - chr1_1:21446820-21446839 Msa0013810:CDS 25.0%
CTTATCGTTTGATGTAAAAG+TGG + chr1_1:21440682-21440701 None:intergenic 30.0%
! AGAATAAAGGAAGAGAGTAT+TGG + chr1_1:21440841-21440860 None:intergenic 30.0%
AGAAGAAGTAGTTATTGTGT+TGG + chr1_1:21441000-21441019 None:intergenic 30.0%
ATGACCCTTTATTAGGTTAT+TGG - chr1_1:21441123-21441142 Msa0013810:intron 30.0%
TAAAGCCTAAAGCAACTATT+GGG + chr1_1:21441250-21441269 None:intergenic 30.0%
ATAAAGCCTAAAGCAACTAT+TGG + chr1_1:21441251-21441270 None:intergenic 30.0%
TATTACTAGTATGAGACAGA+GGG + chr1_1:21441283-21441302 None:intergenic 30.0%
TTATTACTAGTATGAGACAG+AGG + chr1_1:21441284-21441303 None:intergenic 30.0%
CAAAATCTACTTATAAGGTG+AGG + chr1_1:21441370-21441389 None:intergenic 30.0%
CCTCACAAAATCTACTTATA+AGG + chr1_1:21441375-21441394 None:intergenic 30.0%
! CCTTATAAGTAGATTTTGTG+AGG - chr1_1:21441372-21441391 Msa0013810:intron 30.0%
CATCTTAGAATTTATGAGCT+GGG + chr1_1:21441408-21441427 None:intergenic 30.0%
TCATCTTAGAATTTATGAGC+TGG + chr1_1:21441409-21441428 None:intergenic 30.0%
! TCACTTATAAACACTTGTTG+AGG + chr1_1:21441570-21441589 None:intergenic 30.0%
TCAACAAGTGTTTATAAGTG+AGG - chr1_1:21441569-21441588 Msa0013810:intron 30.0%
CAACAAGTGTTTATAAGTGA+GGG - chr1_1:21441570-21441589 Msa0013810:intron 30.0%
TAACACAACCAAACAAAAAG+TGG + chr1_1:21441614-21441633 None:intergenic 30.0%
CAATCTTAAAGTTTGTGGTT+GGG + chr1_1:21441639-21441658 None:intergenic 30.0%
ACAATCTTAAAGTTTGTGGT+TGG + chr1_1:21441640-21441659 None:intergenic 30.0%
TAGTACTTAGTAGTACTACT+GGG + chr1_1:21441803-21441822 None:intergenic 30.0%
AGAAGAAAATGAAAGTCTGA+TGG + chr1_1:21441893-21441912 None:intergenic 30.0%
GAGGAAAAAGAAATCAAATC+AGG + chr1_1:21441918-21441937 None:intergenic 30.0%
ATGCTCAAGATGTTTAGTTA+TGG - chr1_1:21442223-21442242 Msa0013810:intron 30.0%
TGCTCAAGATGTTTAGTTAT+GGG - chr1_1:21442224-21442243 Msa0013810:intron 30.0%
! CAAAACTGACTTATAAGATG+AGG + chr1_1:21442320-21442339 None:intergenic 30.0%
! TTCATATTGACTGCTGTTAA+AGG - chr1_1:21442379-21442398 Msa0013810:intron 30.0%
! CAATATGATGTGCTTTTGTT+TGG - chr1_1:21442483-21442502 Msa0013810:intron 30.0%
! GCTTAATTGTCAATGTTTTC+AGG - chr1_1:21442528-21442547 Msa0013810:intron 30.0%
!! CTATCAAGTTTTCAAGAACA+AGG - chr1_1:21442567-21442586 Msa0013810:intron 30.0%
AAATAGACATGAAAATCACC+CGG + chr1_1:21442680-21442699 None:intergenic 30.0%
! TTTTGTTCACAAACCCAATA+TGG - chr1_1:21442794-21442813 Msa0013810:intron 30.0%
TTTGTTCACAAACCCAATAT+GGG - chr1_1:21442795-21442814 Msa0013810:intron 30.0%
TTCTTATGTAGTCTACTTAC+TGG + chr1_1:21442904-21442923 None:intergenic 30.0%
TTCCCTCTATATAAGTGAAT+AGG - chr1_1:21443026-21443045 Msa0013810:intron 30.0%
CTCCTATTCACTTATATAGA+GGG + chr1_1:21443031-21443050 None:intergenic 30.0%
ACTCCTATTCACTTATATAG+AGG + chr1_1:21443032-21443051 None:intergenic 30.0%
AAGCATGGATATATAGTTTG+TGG + chr1_1:21443126-21443145 None:intergenic 30.0%
TCAAGCAGAAAGAAAAATCT+TGG - chr1_1:21443199-21443218 Msa0013810:intron 30.0%
AGGAAAAGAAAGAAGCTTTA+AGG - chr1_1:21443222-21443241 Msa0013810:intron 30.0%
!! AAAGAAAGAAGCTTTAAGGA+AGG - chr1_1:21443226-21443245 Msa0013810:intron 30.0%
TTCAACATTGGAAGAAAAGT+TGG - chr1_1:21443274-21443293 Msa0013810:intron 30.0%
ATCATGGATGTTATTGAAAG+AGG + chr1_1:21443389-21443408 None:intergenic 30.0%
AATTTCAACGTGAAAGATCA+TGG + chr1_1:21443405-21443424 None:intergenic 30.0%
AAATGTGAATCGACAATCTT+TGG + chr1_1:21443498-21443517 None:intergenic 30.0%
!! ATTAGCCTTGATAAAAGTGA+AGG + chr1_1:21443536-21443555 None:intergenic 30.0%
AATGAAGTATATAACGAAGC+CGG - chr1_1:21443583-21443602 Msa0013810:intron 30.0%
TTTCCAAAATCCAACTATAC+CGG + chr1_1:21443605-21443624 None:intergenic 30.0%
AACTAACCATAATTAGAGCA+GGG + chr1_1:21443636-21443655 None:intergenic 30.0%
AAACTAACCATAATTAGAGC+AGG + chr1_1:21443637-21443656 None:intergenic 30.0%
TACAAAATCTTGCCAAATAG+AGG + chr1_1:21443742-21443761 None:intergenic 30.0%
! ATTTTGTACTGAATAGCCTA+TGG - chr1_1:21443754-21443773 Msa0013810:intron 30.0%
! AAACCGAGAATTTTCATGAT+AGG - chr1_1:21443884-21443903 Msa0013810:intron 30.0%
TAAATCATAAACTGGATCGA+TGG + chr1_1:21443918-21443937 None:intergenic 30.0%
AACTCTCGTAAATCATAAAC+TGG + chr1_1:21443926-21443945 None:intergenic 30.0%
! AGAGTTCATTAAAGCATCTA+AGG - chr1_1:21443940-21443959 Msa0013810:intron 30.0%
! GAGTTCATTAAAGCATCTAA+GGG - chr1_1:21443941-21443960 Msa0013810:intron 30.0%
AATCCTCTTGTCATTCAAAA+AGG - chr1_1:21444120-21444139 Msa0013810:intron 30.0%
! GTCATTCAAAAAGGTCTTTT+TGG - chr1_1:21444129-21444148 Msa0013810:intron 30.0%
! ATTCAAAAAGGTCTTTTTGG+TGG - chr1_1:21444132-21444151 Msa0013810:intron 30.0%
!! TTCAAAAAGGTCTTTTTGGT+GGG - chr1_1:21444133-21444152 Msa0013810:intron 30.0%
! GAACTTAAGATTTCTAGGTA+AGG + chr1_1:21444280-21444299 None:intergenic 30.0%
CCAAATATTGGAATATCGAT+AGG + chr1_1:21444343-21444362 None:intergenic 30.0%
CCTATCGATATTCCAATATT+TGG - chr1_1:21444340-21444359 Msa0013810:CDS 30.0%
ATAGTGCACATTGCAAAAAA+TGG + chr1_1:21444531-21444550 None:intergenic 30.0%
TAACAGTCAAAATTGTGCAT+TGG - chr1_1:21444693-21444712 Msa0013810:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr1_1:21444734-21444753 Msa0013810:intron 30.0%
!! ACTGCCTTAATTGTTGTTTA+AGG - chr1_1:21445159-21445178 Msa0013810:intron 30.0%
TAATTTATTATCACGACAGC+AGG - chr1_1:21445255-21445274 Msa0013810:intron 30.0%
TTATGTTAAGAATCCCACAT+TGG - chr1_1:21445322-21445341 Msa0013810:intron 30.0%
AACTCAAAACCTTACATATC+CGG + chr1_1:21445404-21445423 None:intergenic 30.0%
!!! GATATGTAAGGTTTTGAGTT+GGG - chr1_1:21445404-21445423 Msa0013810:intron 30.0%
TAATATGACCCAATTCAAGT+AGG - chr1_1:21445721-21445740 Msa0013810:intron 30.0%
AATATGACCCAATTCAAGTA+GGG - chr1_1:21445722-21445741 Msa0013810:intron 30.0%
AAAGCTAGAGATAATGAAAG+AGG - chr1_1:21445767-21445786 Msa0013810:intron 30.0%
TAGAGATAATGAAAGAGGAA+AGG - chr1_1:21445772-21445791 Msa0013810:intron 30.0%
TCTAATGGAATTTGAATCCA+GGG + chr1_1:21445883-21445902 None:intergenic 30.0%
TTGACAGAAAATAACAAAGC+TGG + chr1_1:21446066-21446085 None:intergenic 30.0%
TGGATGTAATATACCCTTAA+CGG - chr1_1:21446138-21446157 Msa0013810:intron 30.0%
TAAAGTTTCCTTACCGTTAA+GGG + chr1_1:21446154-21446173 None:intergenic 30.0%
TTAAAGTTTCCTTACCGTTA+AGG + chr1_1:21446155-21446174 None:intergenic 30.0%
ATTCGTTGTCAATTCCATTA+TGG - chr1_1:21446325-21446344 Msa0013810:intron 30.0%
AGATTACTGAGATCCATTTA+AGG - chr1_1:21446468-21446487 Msa0013810:CDS 30.0%
GATTACTGAGATCCATTTAA+GGG - chr1_1:21446469-21446488 Msa0013810:CDS 30.0%
ATTACTGAGATCCATTTAAG+GGG - chr1_1:21446470-21446489 Msa0013810:CDS 30.0%
AAAACAGTGCACTATAATCA+GGG + chr1_1:21446516-21446535 None:intergenic 30.0%
AAAAACAGTGCACTATAATC+AGG + chr1_1:21446517-21446536 None:intergenic 30.0%
CATCTTCGAATATCAAATCT+AGG - chr1_1:21446621-21446640 Msa0013810:CDS 30.0%
CTTAAAATGATCCGTTATGA+AGG - chr1_1:21446740-21446759 Msa0013810:intron 30.0%
TGTATTATTCATGGTAAAGG+AGG - chr1_1:21446823-21446842 Msa0013810:CDS 30.0%
!!! CAAGTGTTTTGTTTGGTTCA+CGG + chr1_1:21440603-21440622 None:intergenic 35.0%
TGATGAAGTGAAACTGTGTT+TGG + chr1_1:21440728-21440747 None:intergenic 35.0%
TAAGTGTTCTCTCAGTTTGT+TGG + chr1_1:21440953-21440972 None:intergenic 35.0%
AAACTGAGAGAACACTTAAG+AGG - chr1_1:21440955-21440974 Msa0013810:intron 35.0%
ACTTCTTCTTCTTCTTCTTC+TGG - chr1_1:21441011-21441030 Msa0013810:intron 35.0%
AGGTTATTGGAAATGAAGGT+TGG - chr1_1:21441136-21441155 Msa0013810:intron 35.0%
GGTTATTGGAAATGAAGGTT+GGG - chr1_1:21441137-21441156 Msa0013810:intron 35.0%
GTTATTGGAAATGAAGGTTG+GGG - chr1_1:21441138-21441157 Msa0013810:intron 35.0%
CTAAGATGATCTGATATGAG+TGG - chr1_1:21441420-21441439 Msa0013810:intron 35.0%
TCCTAATAAGTTTCCGCTAT+CGG - chr1_1:21441467-21441486 Msa0013810:intron 35.0%
CAAACAAAAAGTGGCTTATG+AGG + chr1_1:21441605-21441624 None:intergenic 35.0%
!!! CTCATAAGCCACTTTTTGTT+TGG - chr1_1:21441603-21441622 Msa0013810:intron 35.0%
!!! TTTTTGAGGCCCATACTTTA+TGG + chr1_1:21441767-21441786 None:intergenic 35.0%
GTAGTACTTAGTAGTACTAC+TGG + chr1_1:21441804-21441823 None:intergenic 35.0%
ATGAAAGTCTGATGGAGTAA+TGG + chr1_1:21441885-21441904 None:intergenic 35.0%
CAAGATGACCCAATTCTAAT+AGG + chr1_1:21441961-21441980 None:intergenic 35.0%
!!! TGTTAGGTGGGTGTTTTTTT+GGG - chr1_1:21441988-21442007 Msa0013810:intron 35.0%
! TTTGAGGTTCCTCATGTATA+CGG - chr1_1:21442018-21442037 Msa0013810:intron 35.0%
AAATCACTACCGTATACATG+AGG + chr1_1:21442030-21442049 None:intergenic 35.0%
ATGTTTAGTTATGGGTGTGA+GGG - chr1_1:21442232-21442251 Msa0013810:intron 35.0%
ACAGCAGTCAATATGAATCA+GGG + chr1_1:21442376-21442395 None:intergenic 35.0%
AACAGCAGTCAATATGAATC+AGG + chr1_1:21442377-21442396 None:intergenic 35.0%
CTGCTGTTAAAGGTTTCTTA+TGG - chr1_1:21442389-21442408 Msa0013810:intron 35.0%
! GCACATCATATTGTGTTTTC+TGG + chr1_1:21442476-21442495 None:intergenic 35.0%
!! GTGCTTTTGTTTGGGATTTT+AGG - chr1_1:21442492-21442511 Msa0013810:intron 35.0%
GAATGAAATACTTGGGATTC+AGG + chr1_1:21442738-21442757 None:intergenic 35.0%
!!! GCTGCAGTTGTTTTTCTATT+AGG - chr1_1:21442981-21443000 Msa0013810:intron 35.0%
ACATCGGCAAAAACAGATTA+TGG + chr1_1:21443101-21443120 None:intergenic 35.0%
AGCAGAAAGAAAAATCTTGG+AGG - chr1_1:21443202-21443221 Msa0013810:intron 35.0%
TAGCTTAGTAGGTTCAACAT+TGG - chr1_1:21443262-21443281 Msa0013810:intron 35.0%
TCTACAAAGCCTAAACCATT+TGG - chr1_1:21443308-21443327 Msa0013810:intron 35.0%
CTACAAAGCCTAAACCATTT+GGG - chr1_1:21443309-21443328 Msa0013810:intron 35.0%
TGTATAGTCCCAAATGGTTT+AGG + chr1_1:21443320-21443339 None:intergenic 35.0%
!! GAGTTCCTTCACTTTTATCA+AGG - chr1_1:21443528-21443547 Msa0013810:intron 35.0%
!! GGTATAGTTGGATTTTGGAA+AGG - chr1_1:21443604-21443623 Msa0013810:intron 35.0%
AATCGTTATTGTTCTGCCAT+AGG + chr1_1:21443773-21443792 None:intergenic 35.0%
TACAAGTGTAACTGCTTTAG+AGG - chr1_1:21443992-21444011 Msa0013810:intron 35.0%
ACAAGTGGAAAACATGTGTT+AGG - chr1_1:21444033-21444052 Msa0013810:CDS 35.0%
! AGACCTTTTTGAATGACAAG+AGG + chr1_1:21444126-21444145 None:intergenic 35.0%
TGTCAAGGTAAGTTCATAGA+TGG - chr1_1:21444204-21444223 Msa0013810:intron 35.0%
CTACATGAACGTCCAAATAT+TGG + chr1_1:21444355-21444374 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr1_1:21444738-21444757 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr1_1:21444738-21444757 Msa0013810:intron 35.0%
ACAAAAGACTGTAACAGACA+AGG + chr1_1:21444849-21444868 None:intergenic 35.0%
ACAACAATTAAGGCAGTTCA+AGG + chr1_1:21445156-21445175 None:intergenic 35.0%
ACACCTCTTCCTAATTAATG+AGG + chr1_1:21445282-21445301 None:intergenic 35.0%
!!! GGATATGTAAGGTTTTGAGT+TGG - chr1_1:21445403-21445422 Msa0013810:intron 35.0%
TAAGATGTTGTCAACCCATT+TGG - chr1_1:21445441-21445460 Msa0013810:intron 35.0%
AAGATGTTGTCAACCCATTT+GGG - chr1_1:21445442-21445461 Msa0013810:intron 35.0%
CAGTACTCTACTCAAAATCA+AGG + chr1_1:21445690-21445709 None:intergenic 35.0%
!!! TTTTGAGTAGAGTACTGACT+AGG - chr1_1:21445693-21445712 Msa0013810:intron 35.0%
!! TTTGAGTAGAGTACTGACTA+GGG - chr1_1:21445694-21445713 Msa0013810:intron 35.0%
GTCAGACTCGAAAAATTAGT+GGG - chr1_1:21445744-21445763 Msa0013810:intron 35.0%
! AAGGACCGAATTCTTTTTCT+GGG - chr1_1:21445806-21445825 Msa0013810:intron 35.0%
TGATCCCCAGAAAAAGAATT+CGG + chr1_1:21445814-21445833 None:intergenic 35.0%
CTCTAATGGAATTTGAATCC+AGG + chr1_1:21445884-21445903 None:intergenic 35.0%
AAATGGTTCAAAGGTTCTCA+AGG + chr1_1:21446007-21446026 None:intergenic 35.0%
GTAATATACCCTTAACGGTA+AGG - chr1_1:21446143-21446162 Msa0013810:intron 35.0%
CACAGTAATCCATGATATTG+TGG - chr1_1:21446273-21446292 Msa0013810:intron 35.0%
CAATTCCATTATGGTTGCAT+AGG - chr1_1:21446334-21446353 Msa0013810:intron 35.0%
TTATGCCTATGCAACCATAA+TGG + chr1_1:21446342-21446361 None:intergenic 35.0%
GATATTCGAAGATGTATAGC+AGG + chr1_1:21446615-21446634 None:intergenic 35.0%
TCATCCCTTTATAAAAGCCT+GGG + chr1_1:21446769-21446788 None:intergenic 35.0%
! TGCTGCTTCTGTATTATTCA+TGG - chr1_1:21446814-21446833 Msa0013810:CDS 35.0%
! ATATAAGTAGCTTGTACGTG+AGG - chr1_1:21446944-21446963 Msa0013810:five_prime_UTR 35.0%
! TTGTTTGGTTCACGGATAAG+AGG + chr1_1:21440595-21440614 None:intergenic 40.0%
! ACCAGCTAAACCATTTGCTA+TGG + chr1_1:21440766-21440785 None:intergenic 40.0%
!! GTATTGGTTACAGCTTGAAG+TGG + chr1_1:21440825-21440844 None:intergenic 40.0%
CATGTCATCTCTCACTAATG+CGG + chr1_1:21441322-21441341 None:intergenic 40.0%
AGTGGATATCCAAGAACTGT+TGG - chr1_1:21441438-21441457 Msa0013810:intron 40.0%
!! GATAGCGGAAACTTATTAGG+AGG + chr1_1:21441468-21441487 None:intergenic 40.0%
CCTAATAAGTTTCCGCTATC+GGG - chr1_1:21441468-21441487 Msa0013810:intron 40.0%
ATGTCCATTCATGTGCTTGA+AGG - chr1_1:21441509-21441528 Msa0013810:intron 40.0%
TGTCCATTCATGTGCTTGAA+GGG - chr1_1:21441510-21441529 Msa0013810:intron 40.0%
GTCCCACATTGTTAGTGATA+TGG - chr1_1:21441544-21441563 Msa0013810:intron 40.0%
GGCCATATCACTAACAATGT+GGG + chr1_1:21441549-21441568 None:intergenic 40.0%
AGGCCATATCACTAACAATG+TGG + chr1_1:21441550-21441569 None:intergenic 40.0%
CAAGTGTTTATAAGTGAGGG+TGG - chr1_1:21441573-21441592 Msa0013810:intron 40.0%
AAAAAGTGGCTTATGAGGTG+AGG + chr1_1:21441600-21441619 None:intergenic 40.0%
TGTAAAGAGCTCAATGGAAC+TGG - chr1_1:21441737-21441756 Msa0013810:intron 40.0%
GTAAAGAGCTCAATGGAACT+GGG - chr1_1:21441738-21441757 Msa0013810:intron 40.0%
AACTGGGTCTCCATAAAGTA+TGG - chr1_1:21441754-21441773 Msa0013810:intron 40.0%
ACTGGGTCTCCATAAAGTAT+GGG - chr1_1:21441755-21441774 Msa0013810:intron 40.0%
! GAATTGGGTCATCTTGCTTT+TGG - chr1_1:21441965-21441984 Msa0013810:intron 40.0%
!!! GTCATCTTGCTTTTGGTGTT+AGG - chr1_1:21441972-21441991 Msa0013810:intron 40.0%
!!! ATCTTGCTTTTGGTGTTAGG+TGG - chr1_1:21441975-21441994 Msa0013810:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG - chr1_1:21441976-21441995 Msa0013810:intron 40.0%
!!! GTGTTAGGTGGGTGTTTTTT+TGG - chr1_1:21441987-21442006 Msa0013810:intron 40.0%
! ACGGTAGTGATTTTCACCTT+TGG - chr1_1:21442037-21442056 Msa0013810:intron 40.0%
! CGGTAGTGATTTTCACCTTT+GGG - chr1_1:21442038-21442057 Msa0013810:intron 40.0%
TATATATGCGATACGCCCAA+AGG + chr1_1:21442056-21442075 None:intergenic 40.0%
TTTGGGCGTATCGCATATAT+AGG - chr1_1:21442055-21442074 Msa0013810:intron 40.0%
TTGGGCGTATCGCATATATA+GGG - chr1_1:21442056-21442075 Msa0013810:intron 40.0%
GATGTTTAGTTATGGGTGTG+AGG - chr1_1:21442231-21442250 Msa0013810:intron 40.0%
TGTTTAGTTATGGGTGTGAG+GGG - chr1_1:21442233-21442252 Msa0013810:intron 40.0%
CATCGTTTATCCAATGTGGT+GGG + chr1_1:21442273-21442292 None:intergenic 40.0%
AAGCCATCGTTTATCCAATG+TGG + chr1_1:21442277-21442296 None:intergenic 40.0%
AGCAGTCAATATGAATCAGG+GGG + chr1_1:21442374-21442393 None:intergenic 40.0%
CAGCAGTCAATATGAATCAG+GGG + chr1_1:21442375-21442394 None:intergenic 40.0%
!! AGTTTTCAAGAACAAGGCTG+TGG - chr1_1:21442573-21442592 Msa0013810:intron 40.0%
GAAAGGAAAGTCAAAGGACA+TGG - chr1_1:21442607-21442626 Msa0013810:intron 40.0%
AAAGTCAAAGGACATGGAGA+TGG - chr1_1:21442613-21442632 Msa0013810:CDS 40.0%
GATGGTACTGTTGGAATGTT+CGG - chr1_1:21442631-21442650 Msa0013810:CDS 40.0%
TTATGTACCCGACAATACAG+TGG - chr1_1:21442959-21442978 Msa0013810:intron 40.0%
ATAGAGGGAAGATGAGCATA+GGG + chr1_1:21443016-21443035 None:intergenic 40.0%
TATAGAGGGAAGATGAGCAT+AGG + chr1_1:21443017-21443036 None:intergenic 40.0%
TCCATGCTTAAGTCCATTGT+TGG - chr1_1:21443137-21443156 Msa0013810:intron 40.0%
! ACCAACAATGGACTTAAGCA+TGG + chr1_1:21443141-21443160 None:intergenic 40.0%
ATGTCAAGCGTAACCAACAA+TGG + chr1_1:21443153-21443172 None:intergenic 40.0%
ACTGCATGTATAGTCCCAAA+TGG + chr1_1:21443326-21443345 None:intergenic 40.0%
TATAACGAAGCCGGTATAGT+TGG - chr1_1:21443592-21443611 Msa0013810:intron 40.0%
! AAGCCGGTATAGTTGGATTT+TGG - chr1_1:21443599-21443618 Msa0013810:intron 40.0%
TGTCATCCCTGCTCTAATTA+TGG - chr1_1:21443627-21443646 Msa0013810:intron 40.0%
GAATCAGTGCTGTCAAATAG+CGG + chr1_1:21443830-21443849 None:intergenic 40.0%
TTACCTTGACAACTAGCAAC+GGG + chr1_1:21444195-21444214 None:intergenic 40.0%
CTTACCTTGACAACTAGCAA+CGG + chr1_1:21444196-21444215 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr1_1:21444737-21444756 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr1_1:21444737-21444756 Msa0013810:intron 40.0%
!! TTTGAAACGGAGGGAGTATT+AGG - chr1_1:21444747-21444766 Msa0013810:intron 40.0%
CTAGCATACACGAGAGTTAA+CGG + chr1_1:21444928-21444947 None:intergenic 40.0%
CTTCAAGCAAAACAGGAGAT+TGG - chr1_1:21444989-21445008 Msa0013810:CDS 40.0%
ACAGCAGGACCTCATTAATT+AGG - chr1_1:21445270-21445289 Msa0013810:intron 40.0%
GGACCTCATTAATTAGGAAG+AGG - chr1_1:21445276-21445295 Msa0013810:intron 40.0%
TGCTTTATCACGTCCAATGT+GGG + chr1_1:21445338-21445357 None:intergenic 40.0%
ATGCTTTATCACGTCCAATG+TGG + chr1_1:21445339-21445358 None:intergenic 40.0%
CTAGAGAGCAATACCCAAAT+GGG + chr1_1:21445458-21445477 None:intergenic 40.0%
TCTAGAGAGCAATACCCAAA+TGG + chr1_1:21445459-21445478 None:intergenic 40.0%
CAAAATGAGCTTGTAAGACG+AGG + chr1_1:21445534-21445553 None:intergenic 40.0%
! CTCGTCTTACAAGCTCATTT+TGG - chr1_1:21445532-21445551 Msa0013810:intron 40.0%
! GTCTTACAAGCTCATTTTGG+AGG - chr1_1:21445535-21445554 Msa0013810:intron 40.0%
AGTCTGACCCTACTTGAATT+GGG + chr1_1:21445732-21445751 None:intergenic 40.0%
GGTCAGACTCGAAAAATTAG+TGG - chr1_1:21445743-21445762 Msa0013810:intron 40.0%
TGAAAGAGGAAAGGATCAAG+TGG - chr1_1:21445781-21445800 Msa0013810:intron 40.0%
! CAAGGACCGAATTCTTTTTC+TGG - chr1_1:21445805-21445824 Msa0013810:intron 40.0%
! AGGACCGAATTCTTTTTCTG+GGG - chr1_1:21445807-21445826 Msa0013810:intron 40.0%
AATTTGAATCCAGGGAAAGG+AGG + chr1_1:21445875-21445894 None:intergenic 40.0%
TGGAATTTGAATCCAGGGAA+AGG + chr1_1:21445878-21445897 None:intergenic 40.0%
AGCATGAAACGCACGAAAAA+GGG + chr1_1:21446198-21446217 None:intergenic 40.0%
TAGCATGAAACGCACGAAAA+AGG + chr1_1:21446199-21446218 None:intergenic 40.0%
ATGGATCTCAGTAATCTCGA+GGG + chr1_1:21446465-21446484 None:intergenic 40.0%
AATGGATCTCAGTAATCTCG+AGG + chr1_1:21446466-21446485 None:intergenic 40.0%
! GACTCCCAGGCTTTTATAAA+GGG - chr1_1:21446762-21446781 Msa0013810:intron 40.0%
CTCATCCCTTTATAAAAGCC+TGG + chr1_1:21446770-21446789 None:intergenic 40.0%
! TACGTGAGGTGTTAGTTTAG+TGG - chr1_1:21446958-21446977 Msa0013810:five_prime_UTR 40.0%
! TTTGGTTCACGGATAAGAGG+AGG + chr1_1:21440592-21440611 None:intergenic 45.0%
GAGTCAAACGCCATAGCAAA+TGG - chr1_1:21440753-21440772 Msa0013810:CDS 45.0%
GCCATAGCAAATGGTTTAGC+TGG - chr1_1:21440762-21440781 Msa0013810:CDS 45.0%
ATTGGAAATGAAGGTTGGGG+TGG - chr1_1:21441141-21441160 Msa0013810:intron 45.0%
GGTCTTAAGCCTTCTCTTCT+TGG - chr1_1:21441174-21441193 Msa0013810:intron 45.0%
! CTGCACCCAATAGTTGCTTT+AGG - chr1_1:21441242-21441261 Msa0013810:intron 45.0%
!! CCCGATAGCGGAAACTTATT+AGG + chr1_1:21441471-21441490 None:intergenic 45.0%
GTCCATTCATGTGCTTGAAG+GGG - chr1_1:21441511-21441530 Msa0013810:intron 45.0%
AACCCCTTCAAGCACATGAA+TGG + chr1_1:21441516-21441535 None:intergenic 45.0%
GTCTGATGGAGTAATGGTGA+TGG + chr1_1:21441879-21441898 None:intergenic 45.0%
!!! TAGGTGGGTGTTTTTTTGGG+AGG - chr1_1:21441991-21442010 Msa0013810:intron 45.0%
!!! AGGTGGGTGTTTTTTTGGGA+GGG - chr1_1:21441992-21442011 Msa0013810:intron 45.0%
!!! TTTTTTGGGAGGGTGGTTTG+AGG - chr1_1:21442002-21442021 Msa0013810:intron 45.0%
TCGGCTCTGTAAGTGAAAAG+AGG + chr1_1:21442161-21442180 None:intergenic 45.0%
TGTTAAGAGTCCCACCACAT+TGG - chr1_1:21442260-21442279 Msa0013810:intron 45.0%
CCATCGTTTATCCAATGTGG+TGG + chr1_1:21442274-21442293 None:intergenic 45.0%
CCACCACATTGGATAAACGA+TGG - chr1_1:21442271-21442290 Msa0013810:intron 45.0%
!! GAATCAGGGGGAGTACTAAA+TGG + chr1_1:21442362-21442381 None:intergenic 45.0%
GCAGCTGAAAGGAAAGTCAA+AGG - chr1_1:21442601-21442620 Msa0013810:intron 45.0%
GTACTGTTGGAATGTTCGGT+TGG - chr1_1:21442635-21442654 Msa0013810:CDS 45.0%
CTCATTGTAGCTGCTATTGC+CGG - chr1_1:21442658-21442677 Msa0013810:intron 45.0%
TCATTGTAGCTGCTATTGCC+GGG - chr1_1:21442659-21442678 Msa0013810:intron 45.0%
GAGTCACGAGAACCCATATT+GGG + chr1_1:21442810-21442829 None:intergenic 45.0%
GTCGGGTACATAAGAACGAT+TGG + chr1_1:21442952-21442971 None:intergenic 45.0%
AACTGCAGCCACTGTATTGT+CGG + chr1_1:21442970-21442989 None:intergenic 45.0%
! GCTTCTGAGAGTAGCTTAGT+AGG - chr1_1:21443251-21443270 Msa0013810:intron 45.0%
AGTACCGCTATGCCTCTATT+TGG - chr1_1:21443727-21443746 Msa0013810:intron 45.0%
! CTTGCCAAATAGAGGCATAG+CGG + chr1_1:21443734-21443753 None:intergenic 45.0%
ACTTGTATCCCCTTGCTTCT+TGG + chr1_1:21443979-21443998 None:intergenic 45.0%
GTGGGAGCAATAGCAAAACT+TGG - chr1_1:21444151-21444170 Msa0013810:intron 45.0%
ATACCCGTTGCTAGTTGTCA+AGG - chr1_1:21444189-21444208 Msa0013810:intron 45.0%
CATGTGTGAAGAGGTTGACT+TGG - chr1_1:21444716-21444735 Msa0013810:intron 45.0%
TGATTCGTTCCTTGCAGTCA+AGG - chr1_1:21444966-21444985 Msa0013810:intron 45.0%
GTCAAGGCTTCAAGCAAAAC+AGG - chr1_1:21444982-21445001 Msa0013810:CDS 45.0%
CAAGCAAAACAGGAGATTGG+TGG - chr1_1:21444992-21445011 Msa0013810:CDS 45.0%
ACAATCTTCGCCTTACAAGC+CGG - chr1_1:21445382-21445401 Msa0013810:intron 45.0%
! CCTTACATATCCGGCTTGTA+AGG + chr1_1:21445395-21445414 None:intergenic 45.0%
CCTTACAAGCCGGATATGTA+AGG - chr1_1:21445392-21445411 Msa0013810:intron 45.0%
GCTCTCTAGATATCCTGTAC+CGG - chr1_1:21445469-21445488 Msa0013810:intron 45.0%
CTCTCTAGATATCCTGTACC+GGG - chr1_1:21445470-21445489 Msa0013810:intron 45.0%
TACTTTCAAGGCTTCACACC+CGG + chr1_1:21445491-21445510 None:intergenic 45.0%
GAGTCTGACCCTACTTGAAT+TGG + chr1_1:21445733-21445752 None:intergenic 45.0%
AGGAAAGGATCAAGTGGTCA+AGG - chr1_1:21445787-21445806 Msa0013810:intron 45.0%
GAAAAAGCTTGACCAGTAGC+AGG + chr1_1:21445853-21445872 None:intergenic 45.0%
!! AAGCTTTTTCCTCCTTTCCC+TGG - chr1_1:21445863-21445882 Msa0013810:intron 45.0%
TTAGTCTCAGTAGTTACGCG+CGG + chr1_1:21446440-21446459 None:intergenic 45.0%
TGGATCTCAGTAATCTCGAG+GGG + chr1_1:21446464-21446483 None:intergenic 45.0%
! GGACTCCCAGGCTTTTATAA+AGG - chr1_1:21446761-21446780 Msa0013810:intron 45.0%
!! GGTAAAGGAGGAGCTTGTTA+AGG - chr1_1:21446835-21446854 Msa0013810:CDS 45.0%
!!! TATCTTTTAAAAAATTTAAA+TGG - chr1_1:21442090-21442109 Msa0013810:intron 5.0%
!! TAATAAATTAAAAAAAATTC+AGG + chr1_1:21445245-21445264 None:intergenic 5.0%
!! ATTTAACAAAAAAAAAATAA+TGG + chr1_1:21446405-21446424 None:intergenic 5.0%
TTCACGGATAAGAGGAGGAG+AGG + chr1_1:21440587-21440606 None:intergenic 50.0%
GCAAATGGTTTAGCTGGTGC+TGG - chr1_1:21440768-21440787 Msa0013810:CDS 50.0%
! AATGGTTTAGCTGGTGCTGG+TGG - chr1_1:21440771-21440790 Msa0013810:CDS 50.0%
GCAGCAGTTCCAAGAAGAGA+AGG + chr1_1:21441186-21441205 None:intergenic 50.0%
! TCTTGGAACTGCTGCTTCTC+AGG - chr1_1:21441191-21441210 Msa0013810:intron 50.0%
GGAGGTGATCCAACAGTTCT+TGG + chr1_1:21441450-21441469 None:intergenic 50.0%
TGTGTCAAGTGACCCGATAG+CGG + chr1_1:21441483-21441502 None:intergenic 50.0%
GCATGGTATCAGAGCCTATC+AGG - chr1_1:21441686-21441705 Msa0013810:intron 50.0%
AGCCTATCAGGTTTCTGCTC+AGG - chr1_1:21441698-21441717 Msa0013810:intron 50.0%
GCCTATCAGGTTTCTGCTCA+GGG - chr1_1:21441699-21441718 Msa0013810:intron 50.0%
TCTTTACACACCCCAAGGTC+CGG + chr1_1:21441725-21441744 None:intergenic 50.0%
TGAGCTCTTTACACACCCCA+AGG + chr1_1:21441730-21441749 None:intergenic 50.0%
GGGGTGTGTAAAGAGCTCAA+TGG - chr1_1:21441731-21441750 Msa0013810:intron 50.0%
!!! TGGGTGTTTTTTTGGGAGGG+TGG - chr1_1:21441995-21442014 Msa0013810:intron 50.0%
TTCATACGAATCCGGAGGCT+CGG + chr1_1:21442180-21442199 None:intergenic 50.0%
AGCCTCCGGATTCGTATGAA+CGG - chr1_1:21442180-21442199 Msa0013810:intron 50.0%
CACAGCCGTTCATACGAATC+CGG + chr1_1:21442188-21442207 None:intergenic 50.0%
CTGTGGCTATTGCAGCTGAA+AGG - chr1_1:21442590-21442609 Msa0013810:intron 50.0%
GGACATGGAGATGGTACTGT+TGG - chr1_1:21442622-21442641 Msa0013810:CDS 50.0%
CGAGTCACGAGAACCCATAT+TGG + chr1_1:21442811-21442830 None:intergenic 50.0%
ACTGCAGCCACTGTATTGTC+GGG + chr1_1:21442969-21442988 None:intergenic 50.0%
! TTGCTTCTTGGCAGAGCGTT+TGG + chr1_1:21443967-21443986 None:intergenic 50.0%
AAACGCTCTGCCAAGAAGCA+AGG - chr1_1:21443966-21443985 Msa0013810:intron 50.0%
AACGCTCTGCCAAGAAGCAA+GGG - chr1_1:21443967-21443986 Msa0013810:intron 50.0%
! GTGCATTGGCATGTGTGAAG+AGG - chr1_1:21444707-21444726 Msa0013810:intron 50.0%
TGCTTGAAGCCTTGACTGCA+AGG + chr1_1:21444978-21444997 None:intergenic 50.0%
ATCCTAGCTAGTCCTGCTAC+TGG - chr1_1:21445838-21445857 Msa0013810:intron 50.0%
GGTTCTCAAGGACGTTGTCT+AGG + chr1_1:21445995-21446014 None:intergenic 50.0%
GAAACGCACGAAAAAGGGAG+TGG + chr1_1:21446193-21446212 None:intergenic 50.0%
GAGATCCATTTAAGGGGTCG+CGG - chr1_1:21446476-21446495 Msa0013810:CDS 50.0%
ATCCGTTATGAAGGACTCCC+AGG - chr1_1:21446749-21446768 Msa0013810:intron 50.0%
AGCCTGGGAGTCCTTCATAA+CGG + chr1_1:21446754-21446773 None:intergenic 50.0%
! GGTTGGGGTGGACTCTATAG+TGG - chr1_1:21441153-21441172 Msa0013810:intron 55.0%
GCCCTGAGCAGAAACCTGAT+AGG + chr1_1:21441703-21441722 None:intergenic 55.0%
ATCAGGTTTCTGCTCAGGGC+CGG - chr1_1:21441703-21441722 Msa0013810:intron 55.0%
AGCCGTTCATACGAATCCGG+AGG + chr1_1:21442185-21442204 None:intergenic 55.0%
GGTTCTCGTGACTCGAATGC+AGG - chr1_1:21442816-21442835 Msa0013810:intron 55.0%
ACGCTCTGCCAAGAAGCAAG+GGG - chr1_1:21443968-21443987 Msa0013810:intron 55.0%
!! GACCAGTAGCAGGACTAGCT+AGG + chr1_1:21445843-21445862 None:intergenic 55.0%
ATGCTCCGCGACCCCTTAAA+TGG + chr1_1:21446484-21446503 None:intergenic 55.0%
!! GGTTTAGCTGGTGCTGGTGG+TGG - chr1_1:21440774-21440793 Msa0013810:CDS 60.0%
CACTTACAGAGCCGAGCCTC+CGG - chr1_1:21442166-21442185 Msa0013810:intron 60.0%
GCTGCAGAGCTAGAGTGTGG+TGG + chr1_1:21443806-21443825 None:intergenic 60.0%
CAAGGCTTCACACCCGGTAC+AGG + chr1_1:21445485-21445504 None:intergenic 60.0%
TTCTGCTCAGGGCCGGACCT+TGG - chr1_1:21441710-21441729 Msa0013810:intron 65.0%
TCTGCTCAGGGCCGGACCTT+GGG - chr1_1:21441711-21441730 Msa0013810:intron 65.0%
GGCGCTGCAGAGCTAGAGTG+TGG + chr1_1:21443809-21443828 None:intergenic 65.0%
CTGCTCAGGGCCGGACCTTG+GGG - chr1_1:21441712-21441731 Msa0013810:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 21440570 21447077 21440570 ID=Msa0013810;Name=Msa0013810
chr1_1 mRNA 21440570 21447077 21440570 ID=Msa0013810-mRNA-1;Parent=Msa0013810;Name=Msa0013810-mRNA-1;_AED=0.17;_eAED=0.17;_QI=177|0.8|0.90|1|0.7|0.81|11|164|356
chr1_1 exon 21440570 21440924 21440570 ID=Msa0013810-mRNA-1:exon:7621;Parent=Msa0013810-mRNA-1
chr1_1 exon 21442610 21442664 21442610 ID=Msa0013810-mRNA-1:exon:7620;Parent=Msa0013810-mRNA-1
chr1_1 exon 21443437 21443531 21443437 ID=Msa0013810-mRNA-1:exon:7619;Parent=Msa0013810-mRNA-1
chr1_1 exon 21443651 21443693 21443651 ID=Msa0013810-mRNA-1:exon:7618;Parent=Msa0013810-mRNA-1
chr1_1 exon 21443999 21444067 21443999 ID=Msa0013810-mRNA-1:exon:7617;Parent=Msa0013810-mRNA-1
chr1_1 exon 21444304 21444456 21444304 ID=Msa0013810-mRNA-1:exon:7616;Parent=Msa0013810-mRNA-1
chr1_1 exon 21444810 21444864 21444810 ID=Msa0013810-mRNA-1:exon:7615;Parent=Msa0013810-mRNA-1
chr1_1 exon 21444967 21445097 21444967 ID=Msa0013810-mRNA-1:exon:7614;Parent=Msa0013810-mRNA-1
chr1_1 exon 21446435 21446509 21446435 ID=Msa0013810-mRNA-1:exon:7613;Parent=Msa0013810-mRNA-1
chr1_1 exon 21446592 21446708 21446592 ID=Msa0013810-mRNA-1:exon:7612;Parent=Msa0013810-mRNA-1
chr1_1 exon 21446814 21447077 21446814 ID=Msa0013810-mRNA-1:exon:7611;Parent=Msa0013810-mRNA-1
chr1_1 five_prime_UTR 21446901 21447077 21446901 ID=Msa0013810-mRNA-1:five_prime_utr;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21446814 21446900 21446814 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21446592 21446708 21446592 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21446435 21446509 21446435 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21444967 21445097 21444967 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21444810 21444864 21444810 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21444304 21444456 21444304 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21443999 21444067 21443999 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21443651 21443693 21443651 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21443437 21443531 21443437 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21442610 21442664 21442610 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 CDS 21440734 21440924 21440734 ID=Msa0013810-mRNA-1:cds;Parent=Msa0013810-mRNA-1
chr1_1 three_prime_UTR 21440570 21440733 21440570 ID=Msa0013810-mRNA-1:three_prime_utr;Parent=Msa0013810-mRNA-1
Gene Sequence

>Msa0013810

ATGTCAGAGTCAAACGCCATAGCAAATGGTTTAGCTGGTGCTGGTGGTGGAATCATTGCTCAAATATTAACTTATCCACTTCAAGCTGTAAACACACGCCAACAAACTGAGAGAACACTTAAGAGGAACAAGCAAAGTTCTTCTTCCAACACAATAACTACTTCTTCTTCTTCTTCTTCTGGCATTTTTCTTCAGATTTTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTCTATAGTGGTCTTAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGAATTTACTACTTCTTCTATCAAGTTTTCAAGAACAAGGCTGTGGCTATTGCAGCTGAAAGGAAAGTCAAAGGACATGGAGATGGTACTGTTGGAATGTTCGGTTGGCTCATTGTAGCTGCTATTGCCGGGTCATTGAATGTTTTGTTCACAAACCCAATATGGGTTCTCGTGACTCGAATGCAGACACATACTCAAGCAGAAAGAAAAATCTTGGAGGAAAAGAAAGAAGCTTTAAGGAAGGCTGCTTCTGAGAGTAGCTTAGTAGGTTCAACATTGGAAGAAAAGTTGGAAAAACTGAATTCTACAAAGCCTAAACCATTTGGGACTATACATGCAGCTAATGAAGTATATAACGAAGCCGGTATAGTTGGATTTTGGAAAGGTGTCATCCCTGCTCTAATTATGCATCTAAGGGCCAAACGCTCTGCCAAGAAGCAAGGGGATACAATAAGAATCCTCTTGTCATTCAAAAAGGTCTTTTTGGTGGGAGCAATAGCAAAACTTGGAGCTACTGTCACAACATACCCGTTGCTAGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAATAACTCATTAAGATACTCAGGTACATTTGATGCAATTCTTAAAATGATCCGTTATGAAGGACTCCCAGGCTTTTATAAAGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTATTATTCATGGTAAAGGAGGAGCTTGTTAAGGCTATCACAATTATAGCAAATAAGAGCAAAAAAGTTGTATTAAATTCGAGTAGTTAA
Protein sequence

>Msa0013810

MSESNAIANGLAGAGGGIIAQILTYPLQAVNTRQQTERTLKRNKQSSSSNTITTSSSSSSGIFLQIFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQVFKNKAVAIAAERKVKGHGDGTVGMFGWLIVAAIAGSLNVLFTNPIWVLVTRMQTHTQAERKILEEKKEALRKAASESSLVGSTLEEKLEKLNSTKPKPFGTIHAANEVYNEAGIVGFWKGVIPALIMHLRAKRSAKKQGDTIRILLSFKKVFLVGAIAKLGATVTTYPLLVVKSRLQAKQEIGGNNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAITIIANKSKKVVLNSSS*