Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888580 | KEH26375.1 | 98.361 | 183 | 2 | 1 | 1 | 182 | 87 | 269 | 2.60e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888580 | sp|Q9FLX7|NDUA5_ARATH | 76.433 | 157 | 36 | 1 | 1 | 157 | 1 | 156 | 8.79e-85 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888580 | A0A072UKP4 | 98.361 | 183 | 2 | 1 | 1 | 182 | 87 | 269 | 1.24e-127 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0888580 | 0.839611 | 1.428840e-57 | -8.615850e-47 |
| Msa0003780 | Msa0888580 | 0.821823 | 3.288839e-53 | -8.615850e-47 |
| Msa0016670 | Msa0888580 | 0.815117 | 1.089761e-51 | -8.615850e-47 |
| Msa0044020 | Msa0888580 | 0.801467 | 8.882919e-49 | -8.615850e-47 |
| Msa0046750 | Msa0888580 | 0.812773 | 3.581522e-51 | -8.615850e-47 |
| Msa0049650 | Msa0888580 | -0.806755 | 7.050553e-50 | -8.615850e-47 |
| Msa0074320 | Msa0888580 | 0.809149 | 2.182398e-50 | -8.615850e-47 |
| Msa0076000 | Msa0888580 | 0.812809 | 3.516838e-51 | -8.615850e-47 |
| Msa0094120 | Msa0888580 | 0.846463 | 2.137864e-59 | -8.615850e-47 |
| Msa0623700 | Msa0888580 | 0.828271 | 9.866538e-55 | -8.615850e-47 |
| Msa0661620 | Msa0888580 | 0.811823 | 5.772720e-51 | -8.615850e-47 |
| Msa0703230 | Msa0888580 | 0.838451 | 2.853216e-57 | -8.615850e-47 |
| Msa0730430 | Msa0888580 | 0.808050 | 3.746421e-50 | -8.615850e-47 |
| Msa0744000 | Msa0888580 | 0.824854 | 6.442366e-54 | -8.615850e-47 |
| Msa0760380 | Msa0888580 | 0.804782 | 1.831514e-49 | -8.615850e-47 |
| Msa0770200 | Msa0888580 | 0.812086 | 5.059508e-51 | -8.615850e-47 |
| Msa0826580 | Msa0888580 | 0.826553 | 2.547353e-54 | -8.615850e-47 |
| Msa0124340 | Msa0888580 | 0.801847 | 7.422409e-49 | -8.615850e-47 |
| Msa0186890 | Msa0888580 | 0.835875 | 1.300967e-56 | -8.615850e-47 |
| Msa0187690 | Msa0888580 | 0.812435 | 4.245079e-51 | -8.615850e-47 |
| Msa0191050 | Msa0888580 | 0.800511 | 1.392790e-48 | -8.615850e-47 |
| Msa0225740 | Msa0888580 | 0.855892 | 4.650864e-62 | -8.615850e-47 |
| Msa0402330 | Msa0888580 | 0.828454 | 8.908449e-55 | -8.615850e-47 |
| Msa0424920 | Msa0888580 | 0.812045 | 5.165289e-51 | -8.615850e-47 |
| Msa0425010 | Msa0888580 | 0.814204 | 1.735729e-51 | -8.615850e-47 |
| Msa0436050 | Msa0888580 | 0.829826 | 4.142197e-55 | -8.615850e-47 |
| Msa0240150 | Msa0888580 | 0.808847 | 2.532457e-50 | -8.615850e-47 |
| Msa0264570 | Msa0888580 | 0.834941 | 2.240311e-56 | -8.615850e-47 |
| Msa0268130 | Msa0888580 | 0.800215 | 1.599916e-48 | -8.615850e-47 |
| Msa0340090 | Msa0888580 | 0.804857 | 1.766030e-49 | -8.615850e-47 |
| Msa0355270 | Msa0888580 | 0.817911 | 2.578711e-52 | -8.615850e-47 |
| Msa0508630 | Msa0888580 | 0.801974 | 6.988505e-49 | -8.615850e-47 |
| Msa0516320 | Msa0888580 | 0.822699 | 2.060235e-53 | -8.615850e-47 |
| Msa0541860 | Msa0888580 | 0.838711 | 2.445293e-57 | -8.615850e-47 |
| Msa0546680 | Msa0888580 | 0.809496 | 1.838443e-50 | -8.615850e-47 |
| Msa0864300 | Msa0888580 | 0.824617 | 7.325829e-54 | -8.615850e-47 |
| Msa0876200 | Msa0888580 | 0.801491 | 8.782153e-49 | -8.615850e-47 |
| Msa0878500 | Msa0888580 | 0.800059 | 1.721521e-48 | -8.615850e-47 |
| Msa0888580 | Msa0915280 | 0.883746 | 3.456634e-71 | -8.615850e-47 |
| Msa0888580 | Msa0944190 | 0.818004 | 2.457544e-52 | -8.615850e-47 |
| Msa0888580 | Msa0953150 | 0.930523 | 1.446281e-93 | -8.615850e-47 |
| Msa0888580 | Msa0979010 | 0.815588 | 8.561378e-52 | -8.615850e-47 |
| Msa0888580 | Msa0979730 | 0.849533 | 3.042901e-60 | -8.615850e-47 |
| Msa0888580 | Msa1013400 | 0.807755 | 4.329764e-50 | -8.615850e-47 |
| Msa0888580 | Msa1017630 | 0.807920 | 3.993347e-50 | -8.615850e-47 |
| Msa0888580 | Msa1040830 | 0.810929 | 9.026570e-51 | -8.615850e-47 |
| Msa0888580 | Msa1043690 | 0.822904 | 1.845505e-53 | -8.615850e-47 |
| Msa0888580 | Msa1081150 | 0.820328 | 7.268646e-53 | -8.615850e-47 |
| Msa0888580 | Msa1082700 | 0.809903 | 1.503510e-50 | -8.615850e-47 |
| Msa0888580 | Msa1127890 | 0.850817 | 1.328187e-60 | -8.615850e-47 |
| Msa0888580 | Msa1134110 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa0888580 | Msa1165870 | 0.812017 | 5.237419e-51 | -8.615850e-47 |
| Msa0888580 | Msa1168950 | 0.801524 | 8.645729e-49 | -8.615850e-47 |
| Msa0888580 | Msa1187840 | 0.810519 | 1.106947e-50 | -8.615850e-47 |
| Msa0888580 | Msa1292830 | 0.825038 | 5.829177e-54 | -8.615850e-47 |
| Msa0888580 | Msa1307950 | 0.812301 | 4.542779e-51 | -8.615850e-47 |
| Msa0888580 | Msa1316780 | 0.811846 | 5.708560e-51 | -8.615850e-47 |
| Msa0888580 | Msa1316830 | 0.808839 | 2.542201e-50 | -8.615850e-47 |
| Msa0888580 | Msa1374120 | 0.839262 | 1.760503e-57 | -8.615850e-47 |
| Msa0888580 | Msa1382620 | 0.805870 | 1.083417e-49 | -8.615850e-47 |
| Msa0888580 | Msa1392200 | 0.821375 | 4.175024e-53 | -8.615850e-47 |
| Msa0888580 | Msa1397810 | 0.829049 | 6.397658e-55 | -8.615850e-47 |
| Msa0888580 | Msa1417870 | 0.801270 | 9.745688e-49 | -8.615850e-47 |
| Msa0888580 | Msa1435890 | 0.824866 | 6.398443e-54 | -8.615850e-47 |
| Msa0888580 | Msa1446830 | 0.801626 | 8.237884e-49 | -8.615850e-47 |
| Msa0888580 | Msa1457440 | 0.830138 | 3.475985e-55 | -8.615850e-47 |
| Msa0888580 | Msa1464810 | 0.816468 | 5.444694e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888580 | MtrunA17_Chr6g0470231 | 98.361 | 183 | 2 | 1 | 1 | 182 | 87 | 269 | 2.39e-131 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888580 | AT5G52840.1 | 76.433 | 157 | 36 | 1 | 1 | 157 | 1 | 156 | 8.93e-86 | 250 |
| Msa0888580 | AT5G52840.2 | 80.769 | 104 | 20 | 0 | 1 | 104 | 1 | 104 | 1.39e-56 | 174 |
| Msa0888580 | AT4G28005.1 | 40.506 | 158 | 37 | 4 | 1 | 157 | 1 | 102 | 4.66e-24 | 91.7 |
Find 54 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGATTCAACTGTCTTTC+AGG | 0.138753 | 6_1:+53471689 | Msa0888580:three_prime_UTR |
| TGTCTTTATTCTTGCCATTA+AGG | 0.186637 | 6_1:-53466749 | None:intergenic |
| ATTTAGTTTGATGCAATAAA+AGG | 0.239799 | 6_1:-53471649 | None:intergenic |
| TTACGATACCCTTCATCTTC+TGG | 0.262187 | 6_1:-53466865 | None:intergenic |
| ATCAACACTTCTCTTGCATT+TGG | 0.286655 | 6_1:-53466802 | None:intergenic |
| AGCGATGGCACGACCCTTAA+TGG | 0.290344 | 6_1:+53466735 | Msa0888580:CDS |
| GTCTTTATTCTTGCCATTAA+GGG | 0.290759 | 6_1:-53466748 | None:intergenic |
| TCAACACTTCTCTTGCATTT+GGG | 0.351069 | 6_1:-53466801 | None:intergenic |
| AGAGCTTTGAATTCTCCTTT+TGG | 0.357093 | 6_1:+53471616 | Msa0888580:three_prime_UTR |
| CTTTACAAGTCATAGACTTA+AGG | 0.359250 | 6_1:+53466900 | Msa0888580:CDS |
| AGACACCTTAGATGCACTTA+TGG | 0.361826 | 6_1:+53471481 | Msa0888580:CDS |
| ATCTCAATTTCGTGATCATC+AGG | 0.365884 | 6_1:-53471386 | None:intergenic |
| TATTGCAGAATGGGATCCTT+GGG | 0.383342 | 6_1:+53471358 | Msa0888580:intron |
| GTCAGCCATAAGTGCATCTA+AGG | 0.386612 | 6_1:-53471486 | None:intergenic |
| GAAATGGAGTGTTGTTGTTA+TGG | 0.389111 | 6_1:-53466631 | None:intergenic |
| AAGGTGTCTTGAAACTCCTT+AGG | 0.391049 | 6_1:-53471467 | None:intergenic |
| TTGTCAAGAGGAAGAAGATT+GGG | 0.415064 | 6_1:+53466924 | Msa0888580:CDS |
| TTTGTCAAGAGGAAGAAGAT+TGG | 0.415984 | 6_1:+53466923 | Msa0888580:CDS |
| TCTAATGTAGCTGAAGTTCA+TGG | 0.425368 | 6_1:-53471596 | None:intergenic |
| AAACTCATTGGCTATATGAT+TGG | 0.433002 | 6_1:+53467015 | Msa0888580:CDS |
| GACCCTAAACGAGATCAAAA+AGG | 0.437038 | 6_1:+53466840 | Msa0888580:CDS |
| GCAAGAATAAAGACAACAAC+AGG | 0.445081 | 6_1:+53466757 | Msa0888580:CDS |
| CGGTGTTGAGGAACGTGCTT+CGG | 0.452618 | 6_1:-53471431 | None:intergenic |
| TCAGATTCAACTGTCTTTCA+GGG | 0.453671 | 6_1:+53471690 | Msa0888580:three_prime_UTR |
| TGAGGAACGTGCTTCGGAAT+TGG | 0.463485 | 6_1:-53471425 | None:intergenic |
| CAAGATGAACTCAAACTCAT+TGG | 0.466880 | 6_1:+53467003 | Msa0888580:CDS |
| TGTTGTTATGGAGGTTCTGT+TGG | 0.481902 | 6_1:-53466619 | None:intergenic |
| ACAAGAAAAGATGGTGCTGC+TGG | 0.482122 | 6_1:+53471548 | Msa0888580:CDS |
| GTATTGCAGAATGGGATCCT+TGG | 0.482980 | 6_1:+53471357 | Msa0888580:intron |
| ATTGAGAATCGTCTTGGTTG+TGG | 0.487668 | 6_1:+53466952 | Msa0888580:CDS |
| GAATCGTCTTGGTTGTGGTC+AGG | 0.495827 | 6_1:+53466957 | Msa0888580:CDS |
| ATCAAAGATGGAAAAGATAG+AGG | 0.503646 | 6_1:+53471511 | Msa0888580:CDS |
| TATGGCTGACCCATCAAAGA+TGG | 0.511515 | 6_1:+53471499 | Msa0888580:CDS |
| ATGGAGTGTTGTTGTTATGG+AGG | 0.513941 | 6_1:-53466628 | None:intergenic |
| AAAGGAAAATCACATCCAAA+AGG | 0.525164 | 6_1:-53471631 | None:intergenic |
| AGGTGTCTTGAAACTCCTTA+GGG | 0.525753 | 6_1:-53471466 | None:intergenic |
| GAGAAGATTGAGAATCGTCT+TGG | 0.529191 | 6_1:+53466946 | Msa0888580:CDS |
| GTGGCTAAAACAAGAAAAGA+TGG | 0.539846 | 6_1:+53471539 | Msa0888580:CDS |
| TTGTATGCATGAAATGACTT+TGG | 0.540500 | 6_1:+53471774 | Msa0888580:three_prime_UTR |
| TTAAGGGTCGTGCCATCGCT+CGG | 0.541058 | 6_1:-53466732 | None:intergenic |
| CCGTCCTCCTCGTCTCCCTA+AGG | 0.545794 | 6_1:+53471451 | Msa0888580:CDS |
| TAGACTTAAGGTTTGTCAAG+AGG | 0.583898 | 6_1:+53466912 | Msa0888580:CDS |
| AGACGAGGAGGACGGTGTTG+AGG | 0.584235 | 6_1:-53471443 | None:intergenic |
| AAGACAACAACAGGAATCGT+AGG | 0.600187 | 6_1:+53466766 | Msa0888580:CDS |
| CAAGATGTTTCTCCGAGCGA+TGG | 0.602157 | 6_1:+53466720 | Msa0888580:exon |
| AAAAGGTTCCAGAAGATGAA+GGG | 0.602923 | 6_1:+53466857 | Msa0888580:CDS |
| GGAAAAGATAGAGGAACTTG+TGG | 0.609007 | 6_1:+53471520 | Msa0888580:CDS |
| TCTCAATTTCGTGATCATCA+GGG | 0.633734 | 6_1:-53471385 | None:intergenic |
| TGATCATCAGGGATACCCCA+AGG | 0.657129 | 6_1:-53471374 | None:intergenic |
| CCTTAGGGAGACGAGGAGGA+CGG | 0.660867 | 6_1:-53471451 | None:intergenic |
| TGATGATCACGAAATTGAGA+TGG | 0.663792 | 6_1:+53471388 | Msa0888580:CDS |
| TGAAACTCCTTAGGGAGACG+AGG | 0.673297 | 6_1:-53471458 | None:intergenic |
| AACTCCTTAGGGAGACGAGG+AGG | 0.696168 | 6_1:-53471455 | None:intergenic |
| ATTGCAGAATGGGATCCTTG+GGG | 0.697431 | 6_1:+53471359 | Msa0888580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGTATATTACTAAAAT+AGG | + | chr6_1:53469500-53469519 | Msa0888580:intron | 10.0% |
| !! | TCTTATTATTTAATCATGAT+GGG | - | chr6_1:53468975-53468994 | None:intergenic | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+TGG | + | chr6_1:53469023-53469042 | Msa0888580:intron | 15.0% |
| !!! | CTCTTTATTTGTATATAAAT+GGG | + | chr6_1:53469024-53469043 | Msa0888580:intron | 15.0% |
| !! | AATTATTTCATAATCAATTC+TGG | - | chr6_1:53469354-53469373 | None:intergenic | 15.0% |
| !!! | TAACATAATTGATTTATGTT+TGG | + | chr6_1:53469410-53469429 | Msa0888580:intron | 15.0% |
| !! | ATTATCAAACAATTAAGATT+TGG | - | chr6_1:53471314-53471333 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTTTTTGTGATC+TGG | + | chr6_1:53467115-53467134 | Msa0888580:intron | 20.0% |
| !! | GTTAGGAATAATGATAAATT+GGG | + | chr6_1:53467187-53467206 | Msa0888580:intron | 20.0% |
| !!! | TTTGTGTTTTTATACAGTAA+GGG | + | chr6_1:53467339-53467358 | Msa0888580:intron | 20.0% |
| !! | CCATAATCAATTATTATCAT+TGG | - | chr6_1:53467839-53467858 | None:intergenic | 20.0% |
| !! | CCAATGATAATAATTGATTA+TGG | + | chr6_1:53467836-53467855 | Msa0888580:intron | 20.0% |
| !! | AATTCAATACTCTTATCAAA+AGG | + | chr6_1:53467936-53467955 | Msa0888580:intron | 20.0% |
| !! | AAATATCACATTTGAATCTA+AGG | - | chr6_1:53468001-53468020 | None:intergenic | 20.0% |
| !! | AATTCAATACTCTTATCAAA+AGG | + | chr6_1:53467936-53467955 | Msa0888580:intron | 20.0% |
| !!! | AAATATCACATTTGAAACTA+AGG | - | chr6_1:53468263-53468282 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGTTACAGAGA+GGG | - | chr6_1:53468384-53468403 | None:intergenic | 20.0% |
| !!! | GATCAAAATTCATTGATTTT+AGG | + | chr6_1:53468625-53468644 | Msa0888580:intron | 20.0% |
| !!! | TTTGGTTATTTTGTTTTTCT+AGG | + | chr6_1:53468716-53468735 | Msa0888580:intron | 20.0% |
| !!! | TTGGTTATTTTGTTTTTCTA+GGG | + | chr6_1:53468717-53468736 | Msa0888580:intron | 20.0% |
| !!! | TTTTACTATTTGTTGCAAAT+TGG | + | chr6_1:53468869-53468888 | Msa0888580:intron | 20.0% |
| !!! | TTTACTATTTGTTGCAAATT+GGG | + | chr6_1:53468870-53468889 | Msa0888580:intron | 20.0% |
| !! | CTCTTATTATTTAATCATGA+TGG | - | chr6_1:53468976-53468995 | None:intergenic | 20.0% |
| !! | CATCATGATTAAATAATAAG+AGG | + | chr6_1:53468974-53468993 | Msa0888580:intron | 20.0% |
| !! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6_1:53469000-53469019 | None:intergenic | 20.0% |
| !! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6_1:53469001-53469020 | None:intergenic | 20.0% |
| !!! | TTTTCCATTTGTATCAATAA+AGG | + | chr6_1:53469176-53469195 | Msa0888580:intron | 20.0% |
| !! | GATGGTAATTAAATAAAACA+GGG | - | chr6_1:53469204-53469223 | None:intergenic | 20.0% |
| !! | AGATGGTAATTAAATAAAAC+AGG | - | chr6_1:53469205-53469224 | None:intergenic | 20.0% |
| !! | AAAAAGTAGGGAATTTATTT+GGG | + | chr6_1:53469300-53469319 | Msa0888580:intron | 20.0% |
| !!! | GATTTTGAGATAATTGATTT+TGG | + | chr6_1:53469374-53469393 | Msa0888580:intron | 20.0% |
| !! | AATCCATATTCATATATGTT+TGG | - | chr6_1:53469799-53469818 | None:intergenic | 20.0% |
| !!! | TTGTTGTTCTTTTGTATTAT+CGG | + | chr6_1:53469885-53469904 | Msa0888580:intron | 20.0% |
| !! | TTAGACATATATTCAACTAT+AGG | - | chr6_1:53470281-53470300 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGATTAATATGT+GGG | - | chr6_1:53470517-53470536 | None:intergenic | 20.0% |
| !!! | TTTCTATGTTGATTAATATG+TGG | - | chr6_1:53470518-53470537 | None:intergenic | 20.0% |
| !!! | TAAAAAAATAGGTTTTTCGA+AGG | - | chr6_1:53470584-53470603 | None:intergenic | 20.0% |
| !! | AAATTTAAACTCATAACACA+AGG | - | chr6_1:53470891-53470910 | None:intergenic | 20.0% |
| !!! | TTTAGGATCTTCAAAAATTT+AGG | - | chr6_1:53470973-53470992 | None:intergenic | 20.0% |
| !!! | AACTAAATGTCTAATGTTTT+AGG | - | chr6_1:53470990-53471009 | None:intergenic | 20.0% |
| !! | AAAACATTAGACATTTAGTT+AGG | + | chr6_1:53470990-53471009 | Msa0888580:intron | 20.0% |
| !! | AAACATTAGACATTTAGTTA+GGG | + | chr6_1:53470991-53471010 | Msa0888580:intron | 20.0% |
| !! | TACGAAATACTAATAAAGAA+TGG | + | chr6_1:53471074-53471093 | Msa0888580:intron | 20.0% |
| !!! | TATAACGTGTATTTTATGTT+TGG | + | chr6_1:53471098-53471117 | Msa0888580:intron | 20.0% |
| !!! | TTTTTTTCACTTCATGAATT+TGG | + | chr6_1:53471177-53471196 | Msa0888580:intron | 20.0% |
| !!! | ATTTAGTTTGATGCAATAAA+AGG | - | chr6_1:53471652-53471671 | None:intergenic | 20.0% |
| !!! | TTTTTACGATGTTTTTGTTG+AGG | + | chr6_1:53467165-53467184 | Msa0888580:intron | 25.0% |
| ! | GGTTAGGAATAATGATAAAT+TGG | + | chr6_1:53467186-53467205 | Msa0888580:intron | 25.0% |
| !!! | GTTTGTGTTTTTATACAGTA+AGG | + | chr6_1:53467338-53467357 | Msa0888580:intron | 25.0% |
| ! | TTTCATCAATGCATAAAGAA+AGG | - | chr6_1:53467389-53467408 | None:intergenic | 25.0% |
| ! | ACATTCAATTCATTCATTTG+TGG | + | chr6_1:53467733-53467752 | Msa0888580:intron | 25.0% |
| !!! | TGATCTGTTTTGTGTTTTTT+AGG | + | chr6_1:53467763-53467782 | Msa0888580:intron | 25.0% |
| !! | TTCTGTATTTTATTGAGGTT+AGG | + | chr6_1:53467789-53467808 | Msa0888580:intron | 25.0% |
| !!! | CTTTTTTTTTTGTTACAGAG+AGG | - | chr6_1:53468385-53468404 | None:intergenic | 25.0% |
| !!! | AATGAATTTTGATCCATCAA+GGG | - | chr6_1:53468619-53468638 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTTCTAGGGTTT+TGG | + | chr6_1:53468723-53468742 | Msa0888580:intron | 25.0% |
| ! | GAATGAAAGTTAGATGAAAA+TGG | + | chr6_1:53468781-53468800 | Msa0888580:intron | 25.0% |
| ! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6_1:53468925-53468944 | Msa0888580:intron | 25.0% |
| ! | TTAGGTAGATTATTAGTAAG+TGG | + | chr6_1:53468949-53468968 | Msa0888580:intron | 25.0% |
| ! | TGTATATAAATGGGAATTCT+TGG | + | chr6_1:53469033-53469052 | Msa0888580:intron | 25.0% |
| ! | GTATATAAATGGGAATTCTT+GGG | + | chr6_1:53469034-53469053 | Msa0888580:intron | 25.0% |
| ! | CAAACAAGAAAATAAACAGA+TGG | - | chr6_1:53469222-53469241 | None:intergenic | 25.0% |
| !!! | CATCTGTTTATTTTCTTGTT+TGG | + | chr6_1:53469220-53469239 | Msa0888580:intron | 25.0% |
| ! | GAAAAAGTAGGGAATTTATT+TGG | + | chr6_1:53469299-53469318 | Msa0888580:intron | 25.0% |
| !! | TGAAATTAAGAGAAAGTGTA+AGG | + | chr6_1:53469579-53469598 | Msa0888580:intron | 25.0% |
| !! | GAAATTAAGAGAAAGTGTAA+GGG | + | chr6_1:53469580-53469599 | Msa0888580:intron | 25.0% |
| ! | AAGCTAAAAGTGATTTAACT+TGG | - | chr6_1:53469743-53469762 | None:intergenic | 25.0% |
| ! | CAACCAAACATATATGAATA+TGG | + | chr6_1:53469793-53469812 | Msa0888580:intron | 25.0% |
| ! | ATTGAGAAAATTCTAAACCA+TGG | - | chr6_1:53469847-53469866 | None:intergenic | 25.0% |
| !! | TGTTGTTCTTTTGTATTATC+GGG | + | chr6_1:53469886-53469905 | Msa0888580:intron | 25.0% |
| ! | ACAATAAATACGGTATAACA+CGG | - | chr6_1:53470166-53470185 | None:intergenic | 25.0% |
| ! | ATATATTCAACTATAGGTGT+CGG | - | chr6_1:53470275-53470294 | None:intergenic | 25.0% |
| ! | ATGTGGTTACATTCAATTAT+TGG | + | chr6_1:53470333-53470352 | Msa0888580:intron | 25.0% |
| !!! | CTTGTTTTCTCATTGAAAAA+AGG | - | chr6_1:53470477-53470496 | None:intergenic | 25.0% |
| ! | TAAGAGCCTGTATTAAAAAA+AGG | - | chr6_1:53470826-53470845 | None:intergenic | 25.0% |
| ! | AACATTAGACATTTAGTTAG+GGG | + | chr6_1:53470992-53471011 | Msa0888580:intron | 25.0% |
| ! | GTATTTCGTAAAATTCACAT+CGG | - | chr6_1:53471064-53471083 | None:intergenic | 25.0% |
| !! | CATGAATTTGGTAACTATTA+AGG | + | chr6_1:53471189-53471208 | Msa0888580:intron | 25.0% |
| GTCTTTATTCTTGCCATTAA+GGG | - | chr6_1:53466751-53466770 | None:intergenic | 30.0% | |
| TGTCTTTATTCTTGCCATTA+AGG | - | chr6_1:53466752-53466771 | None:intergenic | 30.0% | |
| ! | AACCTTTTTGATCTCGTTTA+GGG | - | chr6_1:53466845-53466864 | None:intergenic | 30.0% |
| CTTTACAAGTCATAGACTTA+AGG | + | chr6_1:53466900-53466919 | Msa0888580:CDS | 30.0% | |
| ! | AAACTCATTGGCTATATGAT+TGG | + | chr6_1:53467015-53467034 | Msa0888580:CDS | 30.0% |
| !! | CGATCTGATTTGTGTATTTT+AGG | + | chr6_1:53467299-53467318 | Msa0888580:intron | 30.0% |
| TGTCTTATGTGTCTTTATTG+AGG | + | chr6_1:53467553-53467572 | Msa0888580:intron | 30.0% | |
| CTTTATTGAGGCTATGAATT+AGG | + | chr6_1:53467565-53467584 | Msa0888580:intron | 30.0% | |
| !!! | TTTTAGAGTGTAAAGTGAGT+AGG | + | chr6_1:53467620-53467639 | Msa0888580:intron | 30.0% |
| ! | GGATGTTCTGTATTTTATTG+AGG | + | chr6_1:53467784-53467803 | Msa0888580:intron | 30.0% |
| TACTAACAAATGACTAGACT+GGG | - | chr6_1:53468040-53468059 | None:intergenic | 30.0% | |
| ! | TTTGTTAGTAGCTGATGTTT+TGG | + | chr6_1:53468050-53468069 | Msa0888580:intron | 30.0% |
| ! | TTGTTAGTAGCTGATGTTTT+GGG | + | chr6_1:53468051-53468070 | Msa0888580:intron | 30.0% |
| TACTAACAAATGACTAGACT+GGG | - | chr6_1:53468040-53468059 | None:intergenic | 30.0% | |
| ! | TTTGTTAGTAGCTGATGTTT+TGG | + | chr6_1:53468050-53468069 | Msa0888580:intron | 30.0% |
| ! | TTGTTAGTAGCTGATGTTTT+GGG | + | chr6_1:53468051-53468070 | Msa0888580:intron | 30.0% |
| CAAATTATTACCACTGTTGA+CGG | + | chr6_1:53468500-53468519 | Msa0888580:intron | 30.0% | |
| AAATTATTACCACTGTTGAC+GGG | + | chr6_1:53468501-53468520 | Msa0888580:intron | 30.0% | |
| TTTCAGTGCTTCATAATCAA+TGG | + | chr6_1:53468552-53468571 | Msa0888580:intron | 30.0% | |
| ! | GGTTGATATTTCAATCACTT+AGG | - | chr6_1:53468598-53468617 | None:intergenic | 30.0% |
| ATTGAAATATCAACCCTTGA+TGG | + | chr6_1:53468603-53468622 | Msa0888580:intron | 30.0% | |
| !! | CAATGAATTTTGATCCATCA+AGG | - | chr6_1:53468620-53468639 | None:intergenic | 30.0% |
| !! | GATTTTAGGTGATTTCACTT+TGG | + | chr6_1:53468639-53468658 | Msa0888580:intron | 30.0% |
| ! | GACTGTTATGTTATGTGTTT+TGG | + | chr6_1:53468698-53468717 | Msa0888580:intron | 30.0% |
| GAAAGTTAGATGAAAATGGT+AGG | + | chr6_1:53468785-53468804 | Msa0888580:intron | 30.0% | |
| GAAAATGGTAGGCAATTATT+TGG | + | chr6_1:53468796-53468815 | Msa0888580:intron | 30.0% | |
| TTAAAACACCCTCTCATATT+AGG | - | chr6_1:53468904-53468923 | None:intergenic | 30.0% | |
| !! | GGGTGTTTTAAGTAATTAGT+AGG | + | chr6_1:53468913-53468932 | Msa0888580:intron | 30.0% |
| ! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6_1:53469071-53469090 | Msa0888580:intron | 30.0% |
| ! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6_1:53469072-53469091 | Msa0888580:intron | 30.0% |
| GTTACTGTTAATTCGATTCT+AGG | + | chr6_1:53469247-53469266 | Msa0888580:intron | 30.0% | |
| !! | TGTTGTCGATTTATGATGTT+TGG | + | chr6_1:53469454-53469473 | Msa0888580:intron | 30.0% |
| !! | GTTGTCGATTTATGATGTTT+GGG | + | chr6_1:53469455-53469474 | Msa0888580:intron | 30.0% |
| ! | CATACTAGAATCGATTCAAT+TGG | + | chr6_1:53469627-53469646 | Msa0888580:intron | 30.0% |
| !!! | GCTACATATAGTAGCTTTTT+TGG | - | chr6_1:53469653-53469672 | None:intergenic | 30.0% |
| ATATAGTATTCAATGCTCCA+TGG | + | chr6_1:53469827-53469846 | Msa0888580:intron | 30.0% | |
| ! | GTAACTCATCATATTTTACC+TGG | + | chr6_1:53469959-53469978 | Msa0888580:intron | 30.0% |
| ATGTATGTTGTTCATTCATG+TGG | + | chr6_1:53470035-53470054 | Msa0888580:intron | 30.0% | |
| ! | TCATTCACACAATTCTAGAA+AGG | - | chr6_1:53470106-53470125 | None:intergenic | 30.0% |
| CAGAATGGACACAATAAATA+CGG | - | chr6_1:53470176-53470195 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6_1:53470191-53470210 | None:intergenic | 30.0% |
| CCATTCTGTGTAACAAAAAA+TGG | + | chr6_1:53470188-53470207 | Msa0888580:intron | 30.0% | |
| GTTGAAATTACGTCAAAAGT+GGG | - | chr6_1:53470434-53470453 | None:intergenic | 30.0% | |
| TGTTGAAATTACGTCAAAAG+TGG | - | chr6_1:53470435-53470454 | None:intergenic | 30.0% | |
| AAAAAGGTAGTGACTTATGT+AGG | - | chr6_1:53470461-53470480 | None:intergenic | 30.0% | |
| !! | TGTGGGTTTTATAGTCTTAA+TGG | - | chr6_1:53470500-53470519 | None:intergenic | 30.0% |
| !! | TAGGTTTTTCGAAGGAAAAA+TGG | - | chr6_1:53470576-53470595 | None:intergenic | 30.0% |
| ! | GTTCTAGGCTGTAAAAAAAT+AGG | - | chr6_1:53470595-53470614 | None:intergenic | 30.0% |
| ! | AAACAGATTGGTGTTCTATT+TGG | - | chr6_1:53470629-53470648 | None:intergenic | 30.0% |
| GTTACTAGAGAAAAACAGAT+TGG | - | chr6_1:53470641-53470660 | None:intergenic | 30.0% | |
| AGAACATAAATGTGACAAAG+AGG | - | chr6_1:53470714-53470733 | None:intergenic | 30.0% | |
| !!! | AGGCTCTTAATTTTTTTCAG+TGG | + | chr6_1:53470837-53470856 | Msa0888580:intron | 30.0% |
| TTATGTGTTGTATTGCAGAA+TGG | + | chr6_1:53471348-53471367 | Msa0888580:intron | 30.0% | |
| TATGTGTTGTATTGCAGAAT+GGG | + | chr6_1:53471349-53471368 | Msa0888580:intron | 30.0% | |
| ! | CTATCTTTTCCATCTTTGAT+GGG | - | chr6_1:53471511-53471530 | None:intergenic | 30.0% |
| ! | TCTATCTTTTCCATCTTTGA+TGG | - | chr6_1:53471512-53471531 | None:intergenic | 30.0% |
| ATCAAAGATGGAAAAGATAG+AGG | + | chr6_1:53471511-53471530 | Msa0888580:CDS | 30.0% | |
| AAAGGAAAATCACATCCAAA+AGG | - | chr6_1:53471634-53471653 | None:intergenic | 30.0% | |
| !!! | TTCAAGTTTTTTTGGAGCAA+AGG | - | chr6_1:53471722-53471741 | None:intergenic | 30.0% |
| !!! | TCAACCAGTTCAAGTTTTTT+TGG | - | chr6_1:53471730-53471749 | None:intergenic | 30.0% |
| TTGTATGCATGAAATGACTT+TGG | + | chr6_1:53471774-53471793 | Msa0888580:three_prime_UTR | 30.0% | |
| !! | GAAATGGAGTGTTGTTGTTA+TGG | - | chr6_1:53466634-53466653 | None:intergenic | 35.0% |
| GCAAGAATAAAGACAACAAC+AGG | + | chr6_1:53466757-53466776 | Msa0888580:CDS | 35.0% | |
| TCAACACTTCTCTTGCATTT+GGG | - | chr6_1:53466804-53466823 | None:intergenic | 35.0% | |
| ATCAACACTTCTCTTGCATT+TGG | - | chr6_1:53466805-53466824 | None:intergenic | 35.0% | |
| ! | GAACCTTTTTGATCTCGTTT+AGG | - | chr6_1:53466846-53466865 | None:intergenic | 35.0% |
| AAAAAGGTTCCAGAAGATGA+AGG | + | chr6_1:53466856-53466875 | Msa0888580:CDS | 35.0% | |
| AAAAGGTTCCAGAAGATGAA+GGG | + | chr6_1:53466857-53466876 | Msa0888580:CDS | 35.0% | |
| TAGACTTAAGGTTTGTCAAG+AGG | + | chr6_1:53466912-53466931 | Msa0888580:CDS | 35.0% | |
| TTTGTCAAGAGGAAGAAGAT+TGG | + | chr6_1:53466923-53466942 | Msa0888580:CDS | 35.0% | |
| TTGTCAAGAGGAAGAAGATT+GGG | + | chr6_1:53466924-53466943 | Msa0888580:CDS | 35.0% | |
| CAAGATGAACTCAAACTCAT+TGG | + | chr6_1:53467003-53467022 | Msa0888580:CDS | 35.0% | |
| !! | ACGATGTTTTTGTTGAGGTT+AGG | + | chr6_1:53467170-53467189 | Msa0888580:intron | 35.0% |
| !!! | CCTTTGATAGGAAGTGTTTT+CGG | + | chr6_1:53467668-53467687 | Msa0888580:intron | 35.0% |
| GTGAGTATGATCAATAGTCT+CGG | + | chr6_1:53467912-53467931 | Msa0888580:intron | 35.0% | |
| CTACTAACAAATGACTAGAC+TGG | - | chr6_1:53468041-53468060 | None:intergenic | 35.0% | |
| ! | TGTTAGTAGCTGATGTTTTG+GGG | + | chr6_1:53468052-53468071 | Msa0888580:intron | 35.0% |
| ACTACATTACAACCAAGTGA+GGG | - | chr6_1:53468086-53468105 | None:intergenic | 35.0% | |
| GTTCACTTTACTAACAGAGA+GGG | - | chr6_1:53468122-53468141 | None:intergenic | 35.0% | |
| TGTTCACTTTACTAACAGAG+AGG | - | chr6_1:53468123-53468142 | None:intergenic | 35.0% | |
| GTGAGTATGATCAATAGTCT+CGG | + | chr6_1:53467912-53467931 | Msa0888580:intron | 35.0% | |
| CTACTAACAAATGACTAGAC+TGG | - | chr6_1:53468041-53468060 | None:intergenic | 35.0% | |
| ! | TGTTAGTAGCTGATGTTTTG+GGG | + | chr6_1:53468052-53468071 | Msa0888580:intron | 35.0% |
| ACTACATTACAACCAAGTGA+GGG | - | chr6_1:53468086-53468105 | None:intergenic | 35.0% | |
| TTTAGGTGATTTCACTTTGG+TGG | + | chr6_1:53468642-53468661 | Msa0888580:intron | 35.0% | |
| AATGGTAGGCAATTATTTGG+AGG | + | chr6_1:53468799-53468818 | Msa0888580:intron | 35.0% | |
| ATGGTAGGCAATTATTTGGA+GGG | + | chr6_1:53468800-53468819 | Msa0888580:intron | 35.0% | |
| GTAGGTCGTTAATTAGGTTT+AGG | + | chr6_1:53468931-53468950 | Msa0888580:intron | 35.0% | |
| !!! | ATTCTTGGGAGTTTTAGAGT+TGG | + | chr6_1:53469048-53469067 | Msa0888580:intron | 35.0% |
| GGTGCCTTTATTGATACAAA+TGG | - | chr6_1:53469183-53469202 | None:intergenic | 35.0% | |
| !! | TAATTCGATTCTAGGATCCA+TGG | + | chr6_1:53469255-53469274 | Msa0888580:intron | 35.0% |
| !! | AATTCGATTCTAGGATCCAT+GGG | + | chr6_1:53469256-53469275 | Msa0888580:intron | 35.0% |
| ! | GTTCTTTTGTATTATCGGGT+TGG | + | chr6_1:53469890-53469909 | Msa0888580:intron | 35.0% |
| ! | TACATAGAGCATTATGTACC+AGG | - | chr6_1:53469980-53469999 | None:intergenic | 35.0% |
| ! | AATTGTGTGAATGAGTACTG+AGG | + | chr6_1:53470112-53470131 | Msa0888580:intron | 35.0% |
| !! | ATTGTGTGAATGAGTACTGA+GGG | + | chr6_1:53470113-53470132 | Msa0888580:intron | 35.0% |
| TGTCTTGTCTGTTTCATAGT+TGG | + | chr6_1:53470356-53470375 | Msa0888580:intron | 35.0% | |
| GTTCTATTTGGATACAGTTG+TGG | - | chr6_1:53470617-53470636 | None:intergenic | 35.0% | |
| CATATAGGAATAGAGAGACT+TGG | - | chr6_1:53470754-53470773 | None:intergenic | 35.0% | |
| GGAGACTTGCAAAAACATAT+AGG | - | chr6_1:53470769-53470788 | None:intergenic | 35.0% | |
| CAGACAATGACAGAGAAATA+GGG | - | chr6_1:53470790-53470809 | None:intergenic | 35.0% | |
| TCAGACAATGACAGAGAAAT+AGG | - | chr6_1:53470791-53470810 | None:intergenic | 35.0% | |
| GTCATTGTCTGATATTATCG+AGG | + | chr6_1:53470799-53470818 | Msa0888580:intron | 35.0% | |
| !!! | CGAGGACCTTTTTTTAATAC+AGG | + | chr6_1:53470817-53470836 | Msa0888580:intron | 35.0% |
| CAGTGGTTCTTATTCTTGTT+TGG | + | chr6_1:53470854-53470873 | Msa0888580:intron | 35.0% | |
| ! | CTGTTTATTCTCATTTGCTG+TGG | + | chr6_1:53470913-53470932 | Msa0888580:intron | 35.0% |
| !! | TCATTTGCTGTGGAAAATAC+AGG | + | chr6_1:53470923-53470942 | Msa0888580:intron | 35.0% |
| CTAACTAGGAAGAGAATTGA+TGG | - | chr6_1:53471036-53471055 | None:intergenic | 35.0% | |
| ATGCATCTTACTACTAAAGC+TGG | + | chr6_1:53471212-53471231 | Msa0888580:intron | 35.0% | |
| TCTCAATTTCGTGATCATCA+GGG | - | chr6_1:53471388-53471407 | None:intergenic | 35.0% | |
| ATCTCAATTTCGTGATCATC+AGG | - | chr6_1:53471389-53471408 | None:intergenic | 35.0% | |
| TGATGATCACGAAATTGAGA+TGG | + | chr6_1:53471388-53471407 | Msa0888580:CDS | 35.0% | |
| GTGGCTAAAACAAGAAAAGA+TGG | + | chr6_1:53471539-53471558 | Msa0888580:CDS | 35.0% | |
| TCTAATGTAGCTGAAGTTCA+TGG | - | chr6_1:53471599-53471618 | None:intergenic | 35.0% | |
| !!! | AGAGCTTTGAATTCTCCTTT+TGG | + | chr6_1:53471616-53471635 | Msa0888580:three_prime_UTR | 35.0% |
| TTCAGATTCAACTGTCTTTC+AGG | + | chr6_1:53471689-53471708 | Msa0888580:three_prime_UTR | 35.0% | |
| TCAGATTCAACTGTCTTTCA+GGG | + | chr6_1:53471690-53471709 | Msa0888580:three_prime_UTR | 35.0% | |
| !!! | GTTTTTTTGGAGCAAAGGAT+TGG | - | chr6_1:53471717-53471736 | None:intergenic | 35.0% |
| TGCTCCAAAAAAACTTGAAC+TGG | + | chr6_1:53471723-53471742 | Msa0888580:three_prime_UTR | 35.0% | |
| TGTTGTTATGGAGGTTCTGT+TGG | - | chr6_1:53466622-53466641 | None:intergenic | 40.0% | |
| !! | ATGGAGTGTTGTTGTTATGG+AGG | - | chr6_1:53466631-53466650 | None:intergenic | 40.0% |
| AAGACAACAACAGGAATCGT+AGG | + | chr6_1:53466766-53466785 | Msa0888580:CDS | 40.0% | |
| GACCCTAAACGAGATCAAAA+AGG | + | chr6_1:53466840-53466859 | Msa0888580:CDS | 40.0% | |
| TTACGATACCCTTCATCTTC+TGG | - | chr6_1:53466868-53466887 | None:intergenic | 40.0% | |
| GAGAAGATTGAGAATCGTCT+TGG | + | chr6_1:53466946-53466965 | Msa0888580:CDS | 40.0% | |
| ATTGAGAATCGTCTTGGTTG+TGG | + | chr6_1:53466952-53466971 | Msa0888580:CDS | 40.0% | |
| CCGAAAACACTTCCTATCAA+AGG | - | chr6_1:53467671-53467690 | None:intergenic | 40.0% | |
| ! | CCAAGATTAGCTAAAGCATC+TGG | - | chr6_1:53467973-53467992 | None:intergenic | 40.0% |
| CCAGATGCTTTAGCTAATCT+TGG | + | chr6_1:53467970-53467989 | Msa0888580:intron | 40.0% | |
| AACAAATGACTAGACTGGGT+CGG | - | chr6_1:53468036-53468055 | None:intergenic | 40.0% | |
| CTACATTACAACCAAGTGAG+GGG | - | chr6_1:53468085-53468104 | None:intergenic | 40.0% | |
| GACTACATTACAACCAAGTG+AGG | - | chr6_1:53468087-53468106 | None:intergenic | 40.0% | |
| ! | GTAATGTAGTCCCTTTTTCC+CGG | + | chr6_1:53468096-53468115 | Msa0888580:intron | 40.0% |
| ! | CCAAGATTAGCTAAAGCATC+TGG | - | chr6_1:53467973-53467992 | None:intergenic | 40.0% |
| CCAGATGCTTTAGCTAATCT+TGG | + | chr6_1:53467970-53467989 | Msa0888580:intron | 40.0% | |
| AACAAATGACTAGACTGGGT+CGG | - | chr6_1:53468036-53468055 | None:intergenic | 40.0% | |
| CTACATTACAACCAAGTGAG+GGG | - | chr6_1:53468085-53468104 | None:intergenic | 40.0% | |
| GACTACATTACAACCAAGTG+AGG | - | chr6_1:53468087-53468106 | None:intergenic | 40.0% | |
| ! | GTAATGTAGTCCCTTTTTCC+CGG | + | chr6_1:53468096-53468115 | Msa0888580:intron | 40.0% |
| !!! | TTTTTTGTTACAGAGAGGGC+CGG | - | chr6_1:53468380-53468399 | None:intergenic | 40.0% |
| ! | GTTTTTGACACTGACACATG+TGG | + | chr6_1:53468453-53468472 | Msa0888580:intron | 40.0% |
| TTTGTTGCAAATTGGGCGTT+AGG | + | chr6_1:53468877-53468896 | Msa0888580:intron | 40.0% | |
| CGTTAGGACCTAATATGAGA+GGG | + | chr6_1:53468893-53468912 | Msa0888580:intron | 40.0% | |
| !!! | TTGGGAGTTTTAGAGTTGGA+CGG | + | chr6_1:53469052-53469071 | Msa0888580:intron | 40.0% |
| ! | TTTCTGTTTAGGGCTAGAGT+AGG | + | chr6_1:53469082-53469101 | Msa0888580:intron | 40.0% |
| TTGTGTCGAAGCTTTGCTTT+GGG | + | chr6_1:53469116-53469135 | Msa0888580:intron | 40.0% | |
| ATCCATGGGTTCCTATCATT+GGG | + | chr6_1:53469270-53469289 | Msa0888580:intron | 40.0% | |
| ! | TTTGGGATGAAGTGTGTGTT+TGG | + | chr6_1:53469317-53469336 | Msa0888580:intron | 40.0% |
| ! | GAGAAAGTGTAAGGGTAGTT+AGG | + | chr6_1:53469588-53469607 | Msa0888580:intron | 40.0% |
| TGTAAGGGTAGTTAGGTAAG+AGG | + | chr6_1:53469595-53469614 | Msa0888580:intron | 40.0% | |
| GTTGAAACTCTCTAAACGTG+CGG | - | chr6_1:53469770-53469789 | None:intergenic | 40.0% | |
| ! | AAAAATGGCGTTGAACTTGG+CGG | - | chr6_1:53470561-53470580 | None:intergenic | 40.0% |
| ! | AGGAAAAATGGCGTTGAACT+TGG | - | chr6_1:53470564-53470583 | None:intergenic | 40.0% |
| TTGGATACAGTTGTGGTTCT+AGG | - | chr6_1:53470610-53470629 | None:intergenic | 40.0% | |
| TATTGCAGAATGGGATCCTT+GGG | + | chr6_1:53471358-53471377 | Msa0888580:intron | 40.0% | |
| AGGTGTCTTGAAACTCCTTA+GGG | - | chr6_1:53471469-53471488 | None:intergenic | 40.0% | |
| ! | AAGGTGTCTTGAAACTCCTT+AGG | - | chr6_1:53471470-53471489 | None:intergenic | 40.0% |
| AGACACCTTAGATGCACTTA+TGG | + | chr6_1:53471481-53471500 | Msa0888580:CDS | 40.0% | |
| GGAAAAGATAGAGGAACTTG+TGG | + | chr6_1:53471520-53471539 | Msa0888580:CDS | 40.0% | |
| !!! | CTTTTTGGGTTCTTCATTGG+AGG | - | chr6_1:53471576-53471595 | None:intergenic | 40.0% |
| !!! | TGGCTTTTTGGGTTCTTCAT+TGG | - | chr6_1:53471579-53471598 | None:intergenic | 40.0% |
| ! | GCTGAAGTTCATGGCTTTTT+GGG | - | chr6_1:53471590-53471609 | None:intergenic | 40.0% |
| ! | AGCTGAAGTTCATGGCTTTT+TGG | - | chr6_1:53471591-53471610 | None:intergenic | 40.0% |
| !! | TATCAAAGGCGTTGGTGCAA+TGG | - | chr6_1:53467657-53467676 | None:intergenic | 45.0% |
| ATTGCACCAACGCCTTTGAT+AGG | + | chr6_1:53467656-53467675 | Msa0888580:intron | 45.0% | |
| ! | ACACTTCCTATCAAAGGCGT+TGG | - | chr6_1:53467665-53467684 | None:intergenic | 45.0% |
| ACTTTACTAACAGAGAGGGC+CGG | - | chr6_1:53468118-53468137 | None:intergenic | 45.0% | |
| ! | TTTTTGTTACAGAGAGGGCC+GGG | - | chr6_1:53468379-53468398 | None:intergenic | 45.0% |
| ! | TATTACCACTGTTGACGGGT+TGG | + | chr6_1:53468505-53468524 | Msa0888580:intron | 45.0% |
| GCGTTAGGACCTAATATGAG+AGG | + | chr6_1:53468892-53468911 | Msa0888580:intron | 45.0% | |
| AAAGCTTCGACACAACTCAG+AGG | - | chr6_1:53469111-53469130 | None:intergenic | 45.0% | |
| GTTGTGTCGAAGCTTTGCTT+TGG | + | chr6_1:53469115-53469134 | Msa0888580:intron | 45.0% | |
| GATCCATGGGTTCCTATCAT+TGG | + | chr6_1:53469269-53469288 | Msa0888580:intron | 45.0% | |
| TCCATGGGTTCCTATCATTG+GGG | + | chr6_1:53469271-53469290 | Msa0888580:intron | 45.0% | |
| ! | TTTTCAGCACCCCCAATGAT+AGG | - | chr6_1:53469284-53469303 | None:intergenic | 45.0% |
| !! | ATTGGGGGTGCTGAAAAAGT+AGG | + | chr6_1:53469287-53469306 | Msa0888580:intron | 45.0% |
| !! | TTGGGGGTGCTGAAAAAGTA+GGG | + | chr6_1:53469288-53469307 | Msa0888580:intron | 45.0% |
| !! | GAAGTGTGTGTTTGGTTCTG+CGG | + | chr6_1:53469325-53469344 | Msa0888580:intron | 45.0% |
| AGTTAGGTAAGAGGACAGCA+AGG | + | chr6_1:53469604-53469623 | Msa0888580:intron | 45.0% | |
| !! | GAATGAGTACTGAGGGAAAC+AGG | + | chr6_1:53470120-53470139 | Msa0888580:intron | 45.0% |
| TCTAAGTGTCCGACATGTGT+TGG | + | chr6_1:53470296-53470315 | Msa0888580:intron | 45.0% | |
| TGTCAGACACCAACACATGT+CGG | - | chr6_1:53470308-53470327 | None:intergenic | 45.0% | |
| TGGTGTCTGACATCAACATG+TGG | + | chr6_1:53470316-53470335 | Msa0888580:intron | 45.0% | |
| TAGAGAGACTTGGAACAGAG+AGG | - | chr6_1:53470744-53470763 | None:intergenic | 45.0% | |
| !! | TCACATCGGTGTCACTAACT+AGG | - | chr6_1:53471050-53471069 | None:intergenic | 45.0% |
| GTATTGCAGAATGGGATCCT+TGG | + | chr6_1:53471357-53471376 | Msa0888580:intron | 45.0% | |
| ATTGCAGAATGGGATCCTTG+GGG | + | chr6_1:53471359-53471378 | Msa0888580:intron | 45.0% | |
| GTCAGCCATAAGTGCATCTA+AGG | - | chr6_1:53471489-53471508 | None:intergenic | 45.0% | |
| TATGGCTGACCCATCAAAGA+TGG | + | chr6_1:53471499-53471518 | Msa0888580:CDS | 45.0% | |
| !! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6_1:53471548-53471567 | Msa0888580:CDS | 45.0% |
| CTCTCTCTCTCTCTCGGAAA+TGG | - | chr6_1:53466650-53466669 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+CGG | - | chr6_1:53466656-53466675 | None:intergenic | 50.0% | |
| CAAGATGTTTCTCCGAGCGA+TGG | + | chr6_1:53466720-53466739 | Msa0888580:exon | 50.0% | |
| GAATCGTCTTGGTTGTGGTC+AGG | + | chr6_1:53466957-53466976 | Msa0888580:CDS | 50.0% | |
| ! | CACGTGTGCTGTGTTGATGT+CGG | - | chr6_1:53467710-53467729 | None:intergenic | 50.0% |
| CTTTACTAACAGAGAGGGCC+GGG | - | chr6_1:53468117-53468136 | None:intergenic | 50.0% | |
| ACCACAAACACCTGTGCAGA+AGG | + | chr6_1:53468412-53468431 | Msa0888580:intron | 50.0% | |
| ACCTTCTGCACAGGTGTTTG+TGG | - | chr6_1:53468416-53468435 | None:intergenic | 50.0% | |
| TAACACCAACCCGTCAACAG+TGG | - | chr6_1:53468513-53468532 | None:intergenic | 50.0% | |
| !! | TGACGGGTTGGTGTTATGTC+TGG | + | chr6_1:53468517-53468536 | Msa0888580:intron | 50.0% |
| ! | TGTGTGCGCGCTTTTCAATG+TGG | + | chr6_1:53468754-53468773 | Msa0888580:intron | 50.0% |
| ! | GTGTGCGCGCTTTTCAATGT+GGG | + | chr6_1:53468755-53468774 | Msa0888580:intron | 50.0% |
| CCATGGGTTCCTATCATTGG+GGG | + | chr6_1:53469272-53469291 | Msa0888580:intron | 50.0% | |
| AACTTGTGTCAGGGACTCGA+GGG | - | chr6_1:53470408-53470427 | None:intergenic | 50.0% | |
| AGTGGGCACAACTTGTGTCA+GGG | - | chr6_1:53470417-53470436 | None:intergenic | 50.0% | |
| AAGTGGGCACAACTTGTGTC+AGG | - | chr6_1:53470418-53470437 | None:intergenic | 50.0% | |
| CGTTGAACTTGGCGGTTGAT+TGG | - | chr6_1:53470553-53470572 | None:intergenic | 50.0% | |
| TGATCATCAGGGATACCCCA+AGG | - | chr6_1:53471377-53471396 | None:intergenic | 50.0% | |
| TGAGGAACGTGCTTCGGAAT+TGG | - | chr6_1:53471428-53471447 | None:intergenic | 50.0% | |
| TGAAACTCCTTAGGGAGACG+AGG | - | chr6_1:53471461-53471480 | None:intergenic | 50.0% | |
| TTAAGGGTCGTGCCATCGCT+CGG | - | chr6_1:53466735-53466754 | None:intergenic | 55.0% | |
| AGCGATGGCACGACCCTTAA+TGG | + | chr6_1:53466735-53466754 | Msa0888580:CDS | 55.0% | |
| !! | AGGCGTTGGTGCAATGGAGA+CGG | - | chr6_1:53467651-53467670 | None:intergenic | 55.0% |
| ! | TGCTGTGTTGATGTCGGACG+CGG | - | chr6_1:53467704-53467723 | None:intergenic | 55.0% |
| ACAGAGAGGGCCGGGAAAAA+GGG | - | chr6_1:53468109-53468128 | None:intergenic | 55.0% | |
| AACAGAGAGGGCCGGGAAAA+AGG | - | chr6_1:53468110-53468129 | None:intergenic | 55.0% | |
| ACAGAGAGGGCCGGGAAAAA+GGG | - | chr6_1:53468109-53468128 | None:intergenic | 55.0% | |
| TACAGAGAGGGCCGGGAAAA+AGG | - | chr6_1:53468372-53468391 | None:intergenic | 55.0% | |
| GTGAGACACACCTTCTGCAC+AGG | - | chr6_1:53468425-53468444 | None:intergenic | 55.0% | |
| CCCCCAATGATAGGAACCCA+TGG | - | chr6_1:53469275-53469294 | None:intergenic | 55.0% | |
| !! | AGGGACTCGAGGGTATCTAG+GGG | - | chr6_1:53470398-53470417 | None:intergenic | 55.0% |
| !! | CAGGGACTCGAGGGTATCTA+GGG | - | chr6_1:53470399-53470418 | None:intergenic | 55.0% |
| !! | TCAGGGACTCGAGGGTATCT+AGG | - | chr6_1:53470400-53470419 | None:intergenic | 55.0% |
| CAACTTGTGTCAGGGACTCG+AGG | - | chr6_1:53470409-53470428 | None:intergenic | 55.0% | |
| ! | CGGTGTTGAGGAACGTGCTT+CGG | - | chr6_1:53471434-53471453 | None:intergenic | 55.0% |
| AACTCCTTAGGGAGACGAGG+AGG | - | chr6_1:53471458-53471477 | None:intergenic | 55.0% | |
| GGGGATAGCTACCCCTCACT+TGG | + | chr6_1:53468071-53468090 | Msa0888580:intron | 60.0% | |
| GGGGATAGCTACCCCTCACT+TGG | + | chr6_1:53468071-53468090 | Msa0888580:intron | 60.0% | |
| ! | AGACGAGGAGGACGGTGTTG+AGG | - | chr6_1:53471446-53471465 | None:intergenic | 60.0% |
| CCTTAGGGAGACGAGGAGGA+CGG | - | chr6_1:53471454-53471473 | None:intergenic | 60.0% | |
| CCGTCCTCCTCGTCTCCCTA+AGG | + | chr6_1:53471451-53471470 | Msa0888580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 53466617 | 53471837 | 53466617 | ID=Msa0888580;Name=Msa0888580 |
| chr6_1 | mRNA | 53466617 | 53471837 | 53466617 | ID=Msa0888580-mRNA-1;Parent=Msa0888580;Name=Msa0888580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107|1|1|1|1|1|2|236|182 |
| chr6_1 | exon | 53466617 | 53467036 | 53466617 | ID=Msa0888580-mRNA-1:exon:10752;Parent=Msa0888580-mRNA-1 |
| chr6_1 | exon | 53471366 | 53471837 | 53471366 | ID=Msa0888580-mRNA-1:exon:10753;Parent=Msa0888580-mRNA-1 |
| chr6_1 | five_prime_UTR | 53466617 | 53466723 | 53466617 | ID=Msa0888580-mRNA-1:five_prime_utr;Parent=Msa0888580-mRNA-1 |
| chr6_1 | CDS | 53466724 | 53467036 | 53466724 | ID=Msa0888580-mRNA-1:cds;Parent=Msa0888580-mRNA-1 |
| chr6_1 | CDS | 53471366 | 53471601 | 53471366 | ID=Msa0888580-mRNA-1:cds;Parent=Msa0888580-mRNA-1 |
| chr6_1 | three_prime_UTR | 53471602 | 53471837 | 53471602 | ID=Msa0888580-mRNA-1:three_prime_utr;Parent=Msa0888580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
