AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578830 MtrunA17_Chr4g0044091 96.939 196 6 0 1 196 1 196 4.28e-139 386
Msa0578830 MtrunA17_Chr2g0308611 62.319 138 46 1 53 190 188 319 2.07e-52 171
Msa0578830 MtrunA17_Chr4g0055851 53.892 167 69 3 29 193 83 243 3.16e-49 161
Msa0578830 MtrunA17_Chr1g0175651 62.500 136 44 2 51 186 141 269 3.34e-49 162
Msa0578830 MtrunA17_Chr5g0400781 53.896 154 60 3 52 205 113 255 3.71e-49 161
Msa0578830 MtrunA17_Chr4g0054421 58.647 133 46 2 51 183 116 239 2.66e-48 159
Msa0578830 MtrunA17_Chr5g0399491 52.222 180 70 4 22 195 92 261 6.82e-48 158
Msa0578830 MtrunA17_Chr7g0258831 64.800 125 37 2 59 183 155 272 1.14e-47 158
Msa0578830 MtrunA17_Chr8g0335131 64.706 119 37 1 64 182 145 258 5.63e-47 156
Msa0578830 MtrunA17_Chr1g0151971 48.023 177 84 4 26 200 92 262 1.26e-43 147
Msa0578830 MtrunA17_Chr3g0135331 49.342 152 68 2 58 207 138 282 1.79e-35 126
Msa0578830 MtrunA17_Chr2g0299031 43.396 159 80 4 28 183 44 195 2.42e-34 121
Msa0578830 MtrunA17_Chr4g0071411 49.153 118 54 3 67 182 90 203 2.89e-28 105
Msa0578830 MtrunA17_Chr6g0450991 48.352 91 47 0 62 152 64 154 1.91e-19 84.0
Msa0578830 MtrunA17_Chr5g0415941 34.197 193 92 5 4 166 21 208 1.98e-17 79.0
Msa0578830 MtrunA17_Chr8g0362151 35.849 159 93 3 5 159 22 175 4.41e-17 77.4
Msa0578830 MtrunA17_Chr7g0217111 43.750 96 47 1 64 152 79 174 9.63e-17 76.3
Msa0578830 MtrunA17_Chr6g0453021 37.410 139 75 1 14 152 57 183 1.07e-16 76.3
Msa0578830 MtrunA17_Chr5g0416391 43.564 101 57 0 52 152 64 164 2.75e-16 75.5
Msa0578830 MtrunA17_Chr8g0362751 44.792 96 46 1 63 151 87 182 3.62e-16 75.1
Msa0578830 MtrunA17_Chr7g0265521 42.000 100 57 1 54 152 51 150 4.13e-16 73.9
Msa0578830 MtrunA17_Chr3g0119291 38.028 142 73 4 26 152 12 153 1.03e-15 73.6
Msa0578830 MtrunA17_Chr3g0123691 42.202 109 54 3 53 152 46 154 1.45e-15 73.6
Msa0578830 MtrunA17_Chr4g0060031 45.161 93 44 1 65 150 95 187 2.72e-14 70.5
Msa0578830 MtrunA17_Chr1g0179581 44.318 88 48 1 60 147 24 110 4.21e-14 65.9
Msa0578830 MtrunA17_Chr5g0403691 53.731 67 31 0 65 131 53 119 2.29e-13 66.2
Msa0578830 MtrunA17_Chr5g0403701 53.731 67 31 0 65 131 53 119 2.43e-13 66.2
Msa0578830 MtrunA17_Chr8g0381741 45.455 99 51 2 53 150 43 139 3.47e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578830 AT2G01430.1 65.957 188 49 4 1 184 74 250 6.89e-78 235
Msa0578830 AT1G70920.1 59.474 190 56 5 1 184 1 175 1.12e-57 181
Msa0578830 AT1G70920.2 62.025 158 41 3 33 184 1 145 1.61e-56 177
Msa0578830 AT5G06710.1 49.761 209 86 6 1 205 133 326 3.50e-52 171
Msa0578830 AT4G37790.1 56.489 131 51 1 53 183 114 238 4.45e-47 156
Msa0578830 AT3G60390.1 62.406 133 42 3 52 182 148 274 5.83e-47 157
Msa0578830 AT4G16780.1 61.905 126 43 2 59 184 123 243 1.08e-46 155
Msa0578830 AT2G22800.1 57.895 133 46 2 51 183 103 225 6.32e-46 153
Msa0578830 AT2G44910.1 62.295 122 41 1 64 185 162 278 3.40e-45 152
Msa0578830 AT4G17460.1 58.015 131 50 1 53 183 123 248 1.34e-44 150
Msa0578830 AT5G47370.1 58.647 133 47 2 51 183 119 243 3.24e-44 149
Msa0578830 AT2G01430.2 59.350 123 43 3 1 119 74 193 5.79e-41 139
Msa0578830 AT5G06710.4 48.305 118 50 4 1 116 133 241 7.36e-22 90.5
Msa0578830 AT3G01470.1 47.778 90 47 0 63 152 66 155 8.62e-18 79.7
Msa0578830 AT1G26960.1 40.323 124 68 1 52 175 58 175 1.04e-16 76.6
Msa0578830 AT1G69780.1 43.564 101 57 0 52 152 72 172 2.66e-16 75.9
Msa0578830 AT4G36740.2 42.574 101 58 0 56 156 47 147 1.93e-14 69.7
Msa0578830 AT5G65310.1 46.512 86 46 0 65 150 72 157 1.96e-14 70.9
Msa0578830 AT5G65310.2 46.512 86 46 0 65 150 54 139 2.05e-14 70.9
Msa0578830 AT4G36740.1 42.574 101 58 0 56 156 46 146 2.29e-14 69.3
Msa0578830 AT2G36610.1 40.367 109 56 2 53 153 60 167 3.76e-14 68.2
Msa0578830 AT2G18550.1 42.857 98 56 0 54 151 50 147 5.01e-14 68.6
Msa0578830 AT1G27045.5 52.778 72 34 0 65 136 25 96 9.72e-14 67.0
Msa0578830 AT1G27045.3 52.778 72 34 0 65 136 25 96 9.72e-14 67.0
Msa0578830 AT5G03790.1 42.391 92 53 0 65 156 77 168 1.00e-13 68.2
Msa0578830 AT1G27045.1 45.745 94 44 1 65 151 68 161 1.24e-13 67.8
Msa0578830 AT1G27045.2 52.778 72 34 0 65 136 17 88 1.24e-13 66.6
Msa0578830 AT5G15150.1 45.455 88 48 0 65 152 115 202 1.78e-13 68.2
Msa0578830 AT4G40060.1 45.349 86 47 0 65 150 59 144 3.33e-13 67.4
Msa0578830 AT1G27045.4 52.778 72 34 0 65 136 68 139 3.54e-13 66.6
Msa0578830 AT2G22430.1 46.512 86 46 0 65 150 62 147 5.18e-13 67.0
Msa0578830 AT3G01220.1 34.375 160 84 5 5 143 6 165 6.63e-13 66.2
Msa0578830 AT5G66700.1 47.561 82 41 1 49 130 57 136 1.08e-12 65.1
Msa0578830 AT5G03790.2 35.246 122 77 1 59 178 71 192 2.59e-11 60.8

Find 71 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAAGCAGCGTTAA+TGG 0.245343 4_1:-83484162 Msa0578830:CDS
TTCTTGATCTTCTTCTTCTA+TGG 0.256573 4_1:-83485239 Msa0578830:exon
AAAGAGAAGTTGAGGAGCTT+AGG 0.327770 4_1:-83480452 Msa0578830:CDS
CAAGAAGATCCTTGATGAAA+AGG 0.362713 4_1:+83485256 None:intergenic
AGCGACTGTGGCGGTGGTAT+TGG 0.370541 4_1:+83480329 None:intergenic
AAAGTGAAGAAAACAAATTT+AGG 0.381582 4_1:+83485290 None:intergenic
GATGAGGGGAGAAAAGAAAT+TGG 0.383567 4_1:+83485151 None:intergenic
AAGACCCAAACCACCTCTTC+AGG 0.404339 4_1:+83480499 None:intergenic
GGTGGTGACACGCTCACATC+GGG 0.415895 4_1:+83480350 None:intergenic
TGCCATCCATTCTTCTTCTA+CGG 0.429731 4_1:+83484194 None:intergenic
TGAAGCTTTCTTCAAGGAGA+TGG 0.431949 4_1:+83484097 None:intergenic
AAGAGAAGTTGAGGAGCTTA+GGG 0.432553 4_1:-83480451 Msa0578830:CDS
CAACTTCTCTTTGTAGCCTC+CGG 0.434325 4_1:+83480463 None:intergenic
ACAGAAGCAGAAAGAGTGTT+TGG 0.439755 4_1:-83483887 Msa0578830:intron
ATTGGTGAAGAAGCAAAGCC+TGG 0.448686 4_1:+83485169 None:intergenic
GAATACCTGAAGAGGTGGTT+TGG 0.451281 4_1:-83480504 Msa0578830:CDS
GGTCTTTAACTGAACAAAAC+CGG 0.455555 4_1:-83480482 Msa0578830:CDS
AGAAAACAAATTTAGGAGAA+AGG 0.458069 4_1:+83485297 None:intergenic
CTTGATGAAAAGGGAGGAAA+AGG 0.462170 4_1:+83485266 None:intergenic
ACCTACAAGTTCCTCCAGCT+TGG 0.470781 4_1:-83485209 Msa0578830:CDS
AAGAAGATCCTTGATGAAAA+GGG 0.473088 4_1:+83485257 None:intergenic
AACCACACCTCCACTTGCCT+TGG 0.476841 4_1:+83483844 None:intergenic
GAAGCTTTCTTCAAGGAGAT+GGG 0.480176 4_1:+83484098 None:intergenic
AATACCTGAAGAGGTGGTTT+GGG 0.488971 4_1:-83480503 Msa0578830:CDS
TTCGGCAGCGACTGTGGCGG+TGG 0.489852 4_1:+83480323 None:intergenic
CACATTGATAAGGTTGAAGC+TGG 0.491305 4_1:+83480375 None:intergenic
TGTCATGCTTGTCACACTCT+AGG 0.496223 4_1:+83480270 None:intergenic
GTCATGCTTGTCACACTCTA+GGG 0.499070 4_1:+83480271 None:intergenic
ATTCTTCTTCTACGGTTACT+CGG 0.502354 4_1:+83484202 None:intergenic
TAATTACTGGGTTTAAAGTG+TGG 0.513978 4_1:+83484067 None:intergenic
GACTGTGGCGGTGGTATTGG+TGG 0.515726 4_1:+83480332 None:intergenic
TCCAAGCTGGAGGAACTTGT+AGG 0.518571 4_1:+83485208 None:intergenic
GAGTAACCGTAGAAGAAGAA+TGG 0.519061 4_1:-83484200 Msa0578830:CDS
GGTTTCAAAACCGTAGGGCC+AGG 0.531848 4_1:-83483825 Msa0578830:intron
AGCAAAGCCTGGGATAGATA+TGG 0.534631 4_1:+83485180 None:intergenic
CAAGTTGAAGCAGACAGAGA+TGG 0.539564 4_1:-83480532 Msa0578830:CDS
GGAGCTTAGGGCTATGAAGA+TGG 0.542259 4_1:-83480439 Msa0578830:CDS
GATAAGGTTGAAGCTGGAAG+AGG 0.548416 4_1:+83480381 None:intergenic
GAATTGACCATATCTATCCC+AGG 0.565626 4_1:-83485187 Msa0578830:CDS
CACTCGTGCACGATCGAGCG+TGG 0.575990 4_1:+83480224 None:intergenic
AGAATGGATGGCACTAGAAG+AGG 0.577292 4_1:-83484184 Msa0578830:CDS
TTAGCCTTTACCTGGCCCTA+CGG 0.577524 4_1:+83483815 None:intergenic
AGATATGGTCAATTCCAAGC+TGG 0.579606 4_1:+83485195 None:intergenic
ACACCTCCACTTGCCTTGGT+CGG 0.580254 4_1:+83483848 None:intergenic
GTGCTACTTACCAGATGATG+AGG 0.582615 4_1:+83485135 None:intergenic
ACATCGGGGACACATTGATA+AGG 0.583310 4_1:+83480365 None:intergenic
TGCAGCTTAAGCTCCGACCA+AGG 0.586714 4_1:-83483861 Msa0578830:CDS
GACCAAGGCAAGTGGAGGTG+TGG 0.601638 4_1:-83483846 Msa0578830:CDS
AACCGTAGAAGAAGAATGGA+TGG 0.604290 4_1:-83484196 Msa0578830:CDS
TGGTGGTGACACGCTCACAT+CGG 0.609053 4_1:+83480349 None:intergenic
TGCTACTTACCAGATGATGA+GGG 0.609343 4_1:+83485136 None:intergenic
TAAGCTCCGACCAAGGCAAG+TGG 0.615426 4_1:-83483854 Msa0578830:CDS
AGGTGTGGTTTCAAAACCGT+AGG 0.616349 4_1:-83483831 Msa0578830:CDS
TTGGTGAAGAAGCAAAGCCT+GGG 0.624929 4_1:+83485170 None:intergenic
CACTCTAGGGGACAAAATGA+CGG 0.630061 4_1:+83480284 None:intergenic
CAAGAAACTGCGTCTAACAA+AGG 0.630784 4_1:-83484127 Msa0578830:CDS
GAGGCTACAAAGAGAAGTTG+AGG 0.631401 4_1:-83480460 Msa0578830:CDS
TGGAGTGCGAATACCTGAAG+AGG 0.632527 4_1:-83480512 Msa0578830:CDS
TGAGGAGATAACACAGTAGG+TGG 0.632854 4_1:+83480414 None:intergenic
AAGATCCTTGATGAAAAGGG+AGG 0.635554 4_1:+83485260 None:intergenic
TATGGTCAATTCCAAGCTGG+AGG 0.639066 4_1:+83485198 None:intergenic
CTGTGAGGAGATAACACAGT+AGG 0.640869 4_1:+83480411 None:intergenic
GTTAGACGCAGTTTCTTGCG+AGG 0.647544 4_1:+83484132 None:intergenic
GGTGTGGTTTCAAAACCGTA+GGG 0.647806 4_1:-83483830 Msa0578830:CDS
GCTCCGACCAAGGCAAGTGG+AGG 0.651935 4_1:-83483851 Msa0578830:CDS
TCATGCTTGTCACACTCTAG+GGG 0.663913 4_1:+83480272 None:intergenic
AGTGCGAATACCTGAAGAGG+TGG 0.667742 4_1:-83480509 Msa0578830:CDS
GGAAGAGGCTCAGAACTGTG+AGG 0.688248 4_1:+83480396 None:intergenic
GCTACTTACCAGATGATGAG+GGG 0.700104 4_1:+83485137 None:intergenic
CTTTAACTGAACAAAACCGG+AGG 0.724376 4_1:-83480479 Msa0578830:CDS
GTGGTGACACGCTCACATCG+GGG 0.751626 4_1:+83480351 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAATAATAAATTTAA+GGG + chr4_1:83480628-83480647 None:intergenic 0.0%
!! TTATAAAAATAATAAATTTA+AGG + chr4_1:83480629-83480648 None:intergenic 0.0%
!! AATAAAATTAAAACAATGAT+CGG - chr4_1:83480564-83480583 Msa0578830:intron 10.0%
!! AACAAAAAGTTAATATTAAA+CGG - chr4_1:83480647-83480666 Msa0578830:intron 10.0%
!! AAAGTAAAAAATTGTATATT+AGG + chr4_1:83480774-83480793 None:intergenic 10.0%
!! TAAAAAAATGATATATTTGT+CGG - chr4_1:83481090-83481109 Msa0578830:intron 10.0%
!! TATATTATATATCTAACTTT+AGG + chr4_1:83481194-83481213 None:intergenic 10.0%
!! AAAAATTCATAATTCTTTAT+AGG + chr4_1:83481230-83481249 None:intergenic 10.0%
!! AAGAAAATATGAATAAATTA+AGG + chr4_1:83481493-83481512 None:intergenic 10.0%
!! AATTATATGCATATTAATTA+AGG + chr4_1:83481575-83481594 None:intergenic 10.0%
!! TTAATTAATATGCATATAAT+TGG - chr4_1:83481574-83481593 Msa0578830:intron 10.0%
!! ATTAATAATGATAACATTTA+AGG - chr4_1:83482991-83483010 Msa0578830:intron 10.0%
!!! TTAAAGAAAGAATAATATTT+TGG + chr4_1:83484583-83484602 None:intergenic 10.0%
!!! TTCATTTATTTTACCATTAT+TGG - chr4_1:83480504-83480523 Msa0578830:CDS 15.0%
!! TTAAAAAATGAAACCAATAA+TGG + chr4_1:83480520-83480539 None:intergenic 15.0%
!!! TTGATCTTTATTGTTTTTTT+AGG - chr4_1:83480839-83480858 Msa0578830:intron 15.0%
!! AAAAAAATGATATATTTGTC+GGG - chr4_1:83481091-83481110 Msa0578830:intron 15.0%
!!! AAAGAATTATGAATTTTTGT+TGG - chr4_1:83481232-83481251 Msa0578830:intron 15.0%
!!! AAGAATTATGAATTTTTGTT+GGG - chr4_1:83481233-83481252 Msa0578830:intron 15.0%
!!! TTTCATATATAGTCTTAATT+AGG + chr4_1:83481815-83481834 None:intergenic 15.0%
!! TTGTTTAGTAATAAAATGTT+AGG - chr4_1:83481964-83481983 Msa0578830:intron 15.0%
!!! TCATCTCTTAATTTAATTTT+AGG + chr4_1:83482265-83482284 None:intergenic 15.0%
!! GAATAATAACAAAGATAATA+TGG + chr4_1:83482349-83482368 None:intergenic 15.0%
!!! ATAATAATGTTTTTATGAAC+CGG - chr4_1:83482895-83482914 Msa0578830:intron 15.0%
!!! AATAAATAAGAGTATAATAG+TGG + chr4_1:83483148-83483167 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr4_1:83483746-83483765 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr4_1:83483849-83483868 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr4_1:83483873-83483892 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr4_1:83483872-83483891 Msa0578830:CDS 15.0%
!!! TACAAATAGAAATTTTATCT+TGG + chr4_1:83484046-83484065 None:intergenic 15.0%
!! TATTTAACCTATTAATGTAA+GGG + chr4_1:83484111-83484130 None:intergenic 15.0%
!! ATATTTAACCTATTAATGTA+AGG + chr4_1:83484112-83484131 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr4_1:83483746-83483765 None:intergenic 15.0%
!! AAATTATCATAATCAACTAT+TGG + chr4_1:83484617-83484636 None:intergenic 15.0%
!! AATAGTTGATTATGATAATT+TGG - chr4_1:83484616-83484635 Msa0578830:intron 15.0%
!! AAAGTGAAGAAAACAAATTT+AGG + chr4_1:83480206-83480225 None:intergenic 20.0%
!! GAAGAAAAAAATAAGTATGT+GGG + chr4_1:83480686-83480705 None:intergenic 20.0%
!! AGAAGAAAAAAATAAGTATG+TGG + chr4_1:83480687-83480706 None:intergenic 20.0%
!!! TTATTTTTTTCTTCTTCTTG+AGG - chr4_1:83480692-83480711 Msa0578830:intron 20.0%
!!! ATTTTACCTATATTTGCTTT+AGG + chr4_1:83480743-83480762 None:intergenic 20.0%
!! TTACAATGACTGAAAAAATA+AGG + chr4_1:83480801-83480820 None:intergenic 20.0%
!! TAAATTAAGGTCATGTAAAT+GGG + chr4_1:83481480-83481499 None:intergenic 20.0%
!! ATAAATTAAGGTCATGTAAA+TGG + chr4_1:83481481-83481500 None:intergenic 20.0%
!!! TCTTTTCAATTCTTTTTCAT+CGG + chr4_1:83481997-83482016 None:intergenic 20.0%
!!! TAATAATGTTTTTATGAACC+GGG - chr4_1:83482896-83482915 Msa0578830:intron 20.0%
!! TAAAATTATGAATATGAACC+CGG + chr4_1:83482917-83482936 None:intergenic 20.0%
!!! TTGTTTTAACTTCTTTAACT+TGG + chr4_1:83482941-83482960 None:intergenic 20.0%
!! TCCACTAACTATAATTAATA+AGG - chr4_1:83483190-83483209 Msa0578830:intron 20.0%
!! CCACTAACTATAATTAATAA+GGG - chr4_1:83483191-83483210 Msa0578830:intron 20.0%
!! CTTATAATAAAAGCAATGAT+AGG + chr4_1:83483620-83483639 None:intergenic 20.0%
!!! TTGCTTTTATTATAAGACAA+AGG - chr4_1:83483624-83483643 Msa0578830:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr4_1:83483786-83483805 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr4_1:83483863-83483882 Msa0578830:CDS 20.0%
!!! ATTTTTTAACCATTAACTTG+AGG - chr4_1:83484069-83484088 Msa0578830:intron 20.0%
!! TTAATAAAACTCCATAAACA+CGG + chr4_1:83484255-83484274 None:intergenic 20.0%
!! GTAACATAGTATTAATTGAA+GGG + chr4_1:83484553-83484572 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG + chr4_1:83484554-83484573 None:intergenic 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG + chr4_1:83484758-83484777 None:intergenic 20.0%
!!! CATTGATTAAAATGATGATA+TGG + chr4_1:83484905-83484924 None:intergenic 20.0%
!!! TGTACGTTGAATTAATATTT+TGG - chr4_1:83484925-83484944 Msa0578830:intron 20.0%
! AGAAAACAAATTTAGGAGAA+AGG + chr4_1:83480199-83480218 None:intergenic 25.0%
! ATAAAAAAACACAACTGTAG+TGG + chr4_1:83480605-83480624 None:intergenic 25.0%
! TAATATTAAACGGCCTATAA+AGG - chr4_1:83480657-83480676 Msa0578830:intron 25.0%
! AATATTAAACGGCCTATAAA+GGG - chr4_1:83480658-83480677 Msa0578830:intron 25.0%
! TAACTTCCTAAAGCAAATAT+AGG - chr4_1:83480734-83480753 Msa0578830:intron 25.0%
! AAAAAACTTTAGGTACTAGT+TGG + chr4_1:83481154-83481173 None:intergenic 25.0%
!!! ACCTAAAGTTTTTTTTTGAG+AGG - chr4_1:83481160-83481179 Msa0578830:intron 25.0%
! TCCTCTCAAAAAAAAACTTT+AGG + chr4_1:83481164-83481183 None:intergenic 25.0%
!! ATGAATTTTTGTTGGGAAAT+TGG - chr4_1:83481240-83481259 Msa0578830:intron 25.0%
!! TGAATTTTTGTTGGGAAATT+GGG - chr4_1:83481241-83481260 Msa0578830:intron 25.0%
!!! ATTTTGGAGGTATAATTACT+GGG + chr4_1:83481441-83481460 None:intergenic 25.0%
!! TCTTGGTAAAAGAAAGATTT+TGG + chr4_1:83481457-83481476 None:intergenic 25.0%
! ACAATTAGCTCACTTAATTA+AGG - chr4_1:83481840-83481859 Msa0578830:intron 25.0%
!! AGTAAGTTGTATGATTTTGA+TGG - chr4_1:83482037-83482056 Msa0578830:intron 25.0%
! GTTGACATTCTATAACATAA+AGG - chr4_1:83482200-83482219 Msa0578830:intron 25.0%
!!! ATCTTTGTTATTATTCTCCT+AGG - chr4_1:83482353-83482372 Msa0578830:intron 25.0%
!!! TCTTTGTTATTATTCTCCTA+GGG - chr4_1:83482354-83482373 Msa0578830:intron 25.0%
!! AGGTTTATGTTAAGTTTTCA+TGG - chr4_1:83482502-83482521 Msa0578830:intron 25.0%
!!! AACTTGATTTTGCGTTTTTT+TGG + chr4_1:83482532-83482551 None:intergenic 25.0%
! GTTCTTGAAAATTGTTTGAT+TGG - chr4_1:83482735-83482754 Msa0578830:intron 25.0%
! CATTCGTTCTTGAAAATATT+TGG + chr4_1:83482790-83482809 None:intergenic 25.0%
!!! ATGAGTCAATTTTTGAAGTT+AGG - chr4_1:83482807-83482826 Msa0578830:intron 25.0%
! ATTAATTATAGTTAGTGGAG+TGG + chr4_1:83483189-83483208 None:intergenic 25.0%
! CCCTTATTAATTATAGTTAG+TGG + chr4_1:83483194-83483213 None:intergenic 25.0%
! ACTTTAAACGACTATTATTG+TGG - chr4_1:83483286-83483305 Msa0578830:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG - chr4_1:83483286-83483305 Msa0578830:intron 25.0%
!!! TTTTTATGTGTGAAAGTACA+AGG - chr4_1:83483569-83483588 Msa0578830:intron 25.0%
! AAGACAAAGGAATTACATTA+AGG - chr4_1:83483637-83483656 Msa0578830:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr4_1:83483906-83483925 None:intergenic 25.0%
! AAGGTGCACTTAATAATTAT+TGG + chr4_1:83484310-83484329 None:intergenic 25.0%
! CATGATGATTATAAATGCAT+GGG + chr4_1:83484362-83484381 None:intergenic 25.0%
! TCATGATGATTATAAATGCA+TGG + chr4_1:83484363-83484382 None:intergenic 25.0%
!!! GTGTAAGTAATCACTTTTTA+TGG + chr4_1:83484413-83484432 None:intergenic 25.0%
!!! AAACGACACTTATTTTGAAA+CGG + chr4_1:83484453-83484472 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr4_1:83484768-83484787 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4_1:83484694-83484713 Msa0578830:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr4_1:83484694-83484713 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr4_1:83484768-83484787 Msa0578830:intron 25.0%
AAGAAGATCCTTGATGAAAA+GGG + chr4_1:83480239-83480258 None:intergenic 30.0%
TTCTTGATCTTCTTCTTCTA+TGG - chr4_1:83480254-83480273 Msa0578830:three_prime_UTR 30.0%
ATACTAGACAAAGATGCAAA+AGG + chr4_1:83480398-83480417 None:intergenic 30.0%
CGTGCAAAATTAATTCATGT+AGG + chr4_1:83480988-83481007 None:intergenic 30.0%
!!! TTTTTCTGAAGCTTTCTTCA+AGG + chr4_1:83481405-83481424 None:intergenic 30.0%
! TAATTACTGGGTTTAAAGTG+TGG + chr4_1:83481429-83481448 None:intergenic 30.0%
!! GATTTTGGAGGTATAATTAC+TGG + chr4_1:83481442-83481461 None:intergenic 30.0%
! TGGTAAAAGAAAGATTTTGG+AGG + chr4_1:83481454-83481473 None:intergenic 30.0%
TAGAAATATAGCATCTCTCA+TGG + chr4_1:83481544-83481563 None:intergenic 30.0%
AGTTGGAAGCTAATATATAG+AGG + chr4_1:83481705-83481724 None:intergenic 30.0%
GCTAAGTTTCAAAATCATCA+TGG - chr4_1:83482636-83482655 Msa0578830:intron 30.0%
! ATCATGGATTTGTTTGTTGA+AGG - chr4_1:83482652-83482671 Msa0578830:intron 30.0%
!!! TCAATTTTTGAAGTTAGGCA+AGG - chr4_1:83482812-83482831 Msa0578830:intron 30.0%
!!! CAATTTTTGAAGTTAGGCAA+GGG - chr4_1:83482813-83482832 Msa0578830:intron 30.0%
ATAACATTTAAGGAGTTGCA+TGG - chr4_1:83483001-83483020 Msa0578830:intron 30.0%
! AAGTGATTTTGAGCTAAAGA+AGG - chr4_1:83483027-83483046 Msa0578830:intron 30.0%
GACGATTATTATGAGATAGA+GGG + chr4_1:83483076-83483095 None:intergenic 30.0%
AGACGATTATTATGAGATAG+AGG + chr4_1:83483077-83483096 None:intergenic 30.0%
TAAATATTGCATTGCTAGAC+AGG + chr4_1:83483114-83483133 None:intergenic 30.0%
ACAAGGATGGTACAAAAAAA+AGG + chr4_1:83483331-83483350 None:intergenic 30.0%
AGGAATTACATTAAGGAGAA+TGG - chr4_1:83483644-83483663 Msa0578830:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr4_1:83483954-83483973 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr4_1:83483955-83483974 Msa0578830:intron 30.0%
TTTCTCATTAAACATACCGT+AGG - chr4_1:83484156-83484175 Msa0578830:CDS 30.0%
! TTGAGTTGTCTACTTTCATT+TGG + chr4_1:83484215-83484234 None:intergenic 30.0%
GCACTTAATAATTATTGGAG+AGG + chr4_1:83484305-83484324 None:intergenic 30.0%
ATGATTATAAATGCATGGGT+TGG + chr4_1:83484358-83484377 None:intergenic 30.0%
!! TTCAAAATGAGTGTTGCTTT+AGG + chr4_1:83484847-83484866 None:intergenic 30.0%
!! AAGCAACACTCATTTTGAAA+CGG - chr4_1:83484848-83484867 Msa0578830:intron 30.0%
!! TTAATATTTTGGACACATGC+AGG - chr4_1:83484936-83484955 Msa0578830:intron 30.0%
! GGCATCAATGACTAATTTTT+CGG + chr4_1:83485191-83485210 None:intergenic 30.0%
CAAGAAGATCCTTGATGAAA+AGG + chr4_1:83480240-83480259 None:intergenic 35.0%
AAGACACAAACATGAAGAGA+GGG + chr4_1:83480457-83480476 None:intergenic 35.0%
AAAGACACAAACATGAAGAG+AGG + chr4_1:83480458-83480477 None:intergenic 35.0%
ATTCTTCTTCTACGGTTACT+CGG + chr4_1:83481294-83481313 None:intergenic 35.0%
ACACATATTGAAGTCGATTG+AGG + chr4_1:83481744-83481763 None:intergenic 35.0%
ACAAAGATAATATGGCGAAG+AGG + chr4_1:83482341-83482360 None:intergenic 35.0%
TATTATTCTCCTAGGGTTTG+CGG - chr4_1:83482361-83482380 Msa0578830:intron 35.0%
!! TTGCGGAGTGTTATCTATTT+TGG - chr4_1:83482378-83482397 Msa0578830:intron 35.0%
!! TGCGGAGTGTTATCTATTTT+GGG - chr4_1:83482379-83482398 Msa0578830:intron 35.0%
ACATAAACCTTGCCATATGT+AGG + chr4_1:83482492-83482511 None:intergenic 35.0%
TTTCAAGAACATGAACAGCT+AGG + chr4_1:83482725-83482744 None:intergenic 35.0%
ATGGGAATGTTCTCTTAGAT+AGG - chr4_1:83482846-83482865 Msa0578830:intron 35.0%
TGCAAGGATGGTACAATAAA+AGG + chr4_1:83483469-83483488 None:intergenic 35.0%
ATCCTTAATCATTGCCATTG+GGG + chr4_1:83483679-83483698 None:intergenic 35.0%
GATCCTTAATCATTGCCATT+GGG + chr4_1:83483680-83483699 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr4_1:83483716-83483735 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr4_1:83483820-83483839 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr4_1:83483824-83483843 None:intergenic 35.0%
AAACAGTGTCCTCAAGTTAA+TGG + chr4_1:83484081-83484100 None:intergenic 35.0%
AGCAAGACCCTTACATTAAT+AGG - chr4_1:83484101-83484120 Msa0578830:CDS 35.0%
GAAACGGAGTGAGTATTATT+GGG + chr4_1:83484437-83484456 None:intergenic 35.0%
TGAAACGGAGTGAGTATTAT+TGG + chr4_1:83484438-83484457 None:intergenic 35.0%
AGGCAATTGCACATAGATTA+AGG + chr4_1:83484827-83484846 None:intergenic 35.0%
GGTCTTTAACTGAACAAAAC+CGG - chr4_1:83485011-83485030 Msa0578830:intron 35.0%
CTTGATGAAAAGGGAGGAAA+AGG + chr4_1:83480230-83480249 None:intergenic 40.0%
! CTTTTCCTCCCTTTTCATCA+AGG - chr4_1:83480228-83480247 Msa0578830:three_prime_UTR 40.0%
AAGATCCTTGATGAAAAGGG+AGG + chr4_1:83480236-83480255 None:intergenic 40.0%
AGATATGGTCAATTCCAAGC+TGG + chr4_1:83480301-83480320 None:intergenic 40.0%
GAATTGACCATATCTATCCC+AGG - chr4_1:83480306-83480325 Msa0578830:CDS 40.0%
GATGAGGGGAGAAAAGAAAT+TGG + chr4_1:83480345-83480364 None:intergenic 40.0%
! TGCTACTTACCAGATGATGA+GGG + chr4_1:83480360-83480379 None:intergenic 40.0%
AGTATGTGGGAACCCTTTAT+AGG + chr4_1:83480673-83480692 None:intergenic 40.0%
! GGGTGTTACAGTGAAAAAGT+TGG - chr4_1:83481261-83481280 Msa0578830:intron 40.0%
GAGTAACCGTAGAAGAAGAA+TGG - chr4_1:83481293-83481312 Msa0578830:intron 40.0%
AACCGTAGAAGAAGAATGGA+TGG - chr4_1:83481297-83481316 Msa0578830:intron 40.0%
TGCCATCCATTCTTCTTCTA+CGG + chr4_1:83481302-83481321 None:intergenic 40.0%
GAAGAAGAAAGCAGCGTTAA+TGG - chr4_1:83481331-83481350 Msa0578830:intron 40.0%
CAAGAAACTGCGTCTAACAA+AGG - chr4_1:83481366-83481385 Msa0578830:intron 40.0%
GAAGCTTTCTTCAAGGAGAT+GGG + chr4_1:83481398-83481417 None:intergenic 40.0%
TGAAGCTTTCTTCAAGGAGA+TGG + chr4_1:83481399-83481418 None:intergenic 40.0%
AAGGTCATGTAAATGGGTCT+TGG + chr4_1:83481474-83481493 None:intergenic 40.0%
TATAGCATCTCTCATGGACA+TGG + chr4_1:83481538-83481557 None:intergenic 40.0%
!! ACAGAAGCAGAAAGAGTGTT+TGG - chr4_1:83481606-83481625 Msa0578830:intron 40.0%
!! ATAGAGGATTAGCCTTTACC+TGG + chr4_1:83481689-83481708 None:intergenic 40.0%
GATCAGTCATGATGAGAAGT+TGG + chr4_1:83481722-83481741 None:intergenic 40.0%
! ATGGCTATGTTTTCCTGGTT+TGG - chr4_1:83482454-83482473 Msa0578830:intron 40.0%
! TCAAGTTGCAAACCCTAATC+TGG - chr4_1:83482545-83482564 Msa0578830:intron 40.0%
TGAAGGTTTGACCATTGATG+AGG - chr4_1:83482669-83482688 Msa0578830:intron 40.0%
GTTATCTGATTCCAAGTCGA+TGG + chr4_1:83482703-83482722 None:intergenic 40.0%
GAGAGAGTCAGAAACAAAGT+TGG - chr4_1:83483377-83483396 Msa0578830:intron 40.0%
TACAAGGAATGTATGCCACA+TGG - chr4_1:83483585-83483604 Msa0578830:intron 40.0%
ACAAGGAATGTATGCCACAT+GGG - chr4_1:83483586-83483605 Msa0578830:intron 40.0%
CATTAAGGAGAATGGTAACC+AGG - chr4_1:83483652-83483671 Msa0578830:intron 40.0%
GGATCCTTAATCATTGCCAT+TGG + chr4_1:83483681-83483700 None:intergenic 40.0%
!!! AACAGAGGGAGTACTTGTTT+TGG + chr4_1:83483702-83483721 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr4_1:83483717-83483736 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr4_1:83483821-83483840 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4_1:83483959-83483978 Msa0578830:intron 40.0%
TTTATCCCACAGCAATCCTA+CGG + chr4_1:83484175-83484194 None:intergenic 40.0%
AAACTCCATAAACACGGACA+CGG + chr4_1:83484249-83484268 None:intergenic 40.0%
! GTCTAAAGCATGAAATCGAG+TGG + chr4_1:83484336-83484355 None:intergenic 40.0%
GGTAAAATTACTACTCCCTC+CGG - chr4_1:83484637-83484656 Msa0578830:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4_1:83484772-83484791 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4_1:83484771-83484790 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4_1:83484771-83484790 Msa0578830:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4_1:83484772-83484791 Msa0578830:intron 40.0%
AATACCTGAAGAGGTGGTTT+GGG - chr4_1:83484990-83485009 Msa0578830:intron 40.0%
CTTTAACTGAACAAAACCGG+AGG - chr4_1:83485014-83485033 Msa0578830:intron 40.0%
AAAGAGAAGTTGAGGAGCTT+AGG - chr4_1:83485041-83485060 Msa0578830:intron 40.0%
AAGAGAAGTTGAGGAGCTTA+GGG - chr4_1:83485042-83485061 Msa0578830:intron 40.0%
CACATTGATAAGGTTGAAGC+TGG + chr4_1:83485121-83485140 None:intergenic 40.0%
TATGGTCAATTCCAAGCTGG+AGG + chr4_1:83480298-83480317 None:intergenic 45.0%
AGCAAAGCCTGGGATAGATA+TGG + chr4_1:83480316-83480335 None:intergenic 45.0%
TTGGTGAAGAAGCAAAGCCT+GGG + chr4_1:83480326-83480345 None:intergenic 45.0%
ATTGGTGAAGAAGCAAAGCC+TGG + chr4_1:83480327-83480346 None:intergenic 45.0%
! TCTTTTCTCCCCTCATCATC+TGG - chr4_1:83480348-83480367 Msa0578830:CDS 45.0%
GCTACTTACCAGATGATGAG+GGG + chr4_1:83480359-83480378 None:intergenic 45.0%
!! GTGCTACTTACCAGATGATG+AGG + chr4_1:83480361-83480380 None:intergenic 45.0%
AGAATGGATGGCACTAGAAG+AGG - chr4_1:83481309-83481328 Msa0578830:intron 45.0%
AGGTGTGGTTTCAAAACCGT+AGG - chr4_1:83481662-83481681 Msa0578830:intron 45.0%
GGTGTGGTTTCAAAACCGTA+GGG - chr4_1:83481663-83481682 Msa0578830:intron 45.0%
TTTGGGTCGTCGTGTTCAAT+TGG - chr4_1:83482396-83482415 Msa0578830:intron 45.0%
TTGGGTCGTCGTGTTCAATT+GGG - chr4_1:83482397-83482416 Msa0578830:intron 45.0%
AAGACACACGCTACTCACAA+GGG + chr4_1:83482432-83482451 None:intergenic 45.0%
! CTTGCATGGCTATGTTTTCC+TGG - chr4_1:83482449-83482468 Msa0578830:intron 45.0%
CGTATGCATCAGCCTACATA+TGG - chr4_1:83482477-83482496 Msa0578830:intron 45.0%
!! GTGGTGCTTTGGGAATGATT+CGG + chr4_1:83482580-83482599 None:intergenic 45.0%
TTTGCAAAGCGTGGTGCTTT+GGG + chr4_1:83482590-83482609 None:intergenic 45.0%
TCAGAAAGCTTTGCAAAGCG+TGG + chr4_1:83482599-83482618 None:intergenic 45.0%
AGGTTTGACCATTGATGAGG+AGG - chr4_1:83482672-83482691 Msa0578830:intron 45.0%
TGGTCAAACCTCCTCATCAA+TGG + chr4_1:83482683-83482702 None:intergenic 45.0%
AGGCAAGGGTTTGACATTCA+TGG - chr4_1:83482827-83482846 Msa0578830:intron 45.0%
GGCAAGGGTTTGACATTCAT+GGG - chr4_1:83482828-83482847 Msa0578830:intron 45.0%
TCTTCTCCCTAGTGTCACAT+GGG + chr4_1:83483359-83483378 None:intergenic 45.0%
GAGAGAGTCAGAGACAAAGT+TGG - chr4_1:83483514-83483533 Msa0578830:intron 45.0%
!! AGACAAAGTTGGTGAGTGTG+TGG - chr4_1:83483525-83483544 Msa0578830:intron 45.0%
!! GACAAAGTTGGTGAGTGTGT+GGG - chr4_1:83483526-83483545 Msa0578830:intron 45.0%
!! ACAAAGTTGGTGAGTGTGTG+GGG - chr4_1:83483390-83483409 Msa0578830:intron 45.0%
AAAAATGACACGTGACGACG+TGG + chr4_1:83483554-83483573 None:intergenic 45.0%
CAAGGAATGTATGCCACATG+GGG - chr4_1:83483587-83483606 Msa0578830:intron 45.0%
GACCCCAATGGCAATGATTA+AGG - chr4_1:83483674-83483693 Msa0578830:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4_1:83483958-83483977 Msa0578830:intron 45.0%
AACATACCGTAGGATTGCTG+TGG - chr4_1:83484166-83484185 Msa0578830:CDS 45.0%
ACATACCGTAGGATTGCTGT+GGG - chr4_1:83484167-83484186 Msa0578830:CDS 45.0%
GCATGAAATCGAGTGGTCAA+AGG + chr4_1:83484329-83484348 None:intergenic 45.0%
GTCAAATGTCATACTCCCTC+CGG + chr4_1:83484790-83484809 None:intergenic 45.0%
! CAAGTTGAAGCAGACAGAGA+TGG - chr4_1:83484961-83484980 Msa0578830:intron 45.0%
GAATACCTGAAGAGGTGGTT+TGG - chr4_1:83484989-83485008 Msa0578830:intron 45.0%
CAACTTCTCTTTGTAGCCTC+CGG + chr4_1:83485033-83485052 None:intergenic 45.0%
GAGGCTACAAAGAGAAGTTG+AGG - chr4_1:83485033-83485052 Msa0578830:intron 45.0%
TGAGGAGATAACACAGTAGG+TGG + chr4_1:83485082-83485101 None:intergenic 45.0%
CTGTGAGGAGATAACACAGT+AGG + chr4_1:83485085-83485104 None:intergenic 45.0%
GATAAGGTTGAAGCTGGAAG+AGG + chr4_1:83485115-83485134 None:intergenic 45.0%
ACATCGGGGACACATTGATA+AGG + chr4_1:83485131-83485150 None:intergenic 45.0%
!! TAATTTTTCGGCAGCGACTG+TGG + chr4_1:83485179-83485198 None:intergenic 45.0%
! CACTCTAGGGGACAAAATGA+CGG + chr4_1:83485212-83485231 None:intergenic 45.0%
TCATGCTTGTCACACTCTAG+GGG + chr4_1:83485224-83485243 None:intergenic 45.0%
GTCATGCTTGTCACACTCTA+GGG + chr4_1:83485225-83485244 None:intergenic 45.0%
TGTCATGCTTGTCACACTCT+AGG + chr4_1:83485226-83485245 None:intergenic 45.0%
!!! AAAAAAAAAATCAAAATTTT+GGG + chr4_1:83482162-83482181 None:intergenic 5.0%
!!! TAAAAAAAAAATCAAAATTT+TGG + chr4_1:83482163-83482182 None:intergenic 5.0%
ACCTACAAGTTCCTCCAGCT+TGG - chr4_1:83480284-83480303 Msa0578830:CDS 50.0%
TCCAAGCTGGAGGAACTTGT+AGG + chr4_1:83480288-83480307 None:intergenic 50.0%
GTTAGACGCAGTTTCTTGCG+AGG + chr4_1:83481364-83481383 None:intergenic 50.0%
AAAACCGTAGGGCCAGGTAA+AGG - chr4_1:83481674-83481693 Msa0578830:intron 50.0%
! TTAGCCTTTACCTGGCCCTA+CGG + chr4_1:83481681-83481700 None:intergenic 50.0%
GATAACACTCCGCAAACCCT+AGG + chr4_1:83482373-83482392 None:intergenic 50.0%
CAAGACACACGCTACTCACA+AGG + chr4_1:83482433-83482452 None:intergenic 50.0%
TGAGTAGCGTGTGTCTTGCA+TGG - chr4_1:83482435-83482454 Msa0578830:intron 50.0%
GCATCAGCCTACATATGGCA+AGG - chr4_1:83482482-83482501 Msa0578830:intron 50.0%
CGGAATGCGCATCCAGATTA+GGG + chr4_1:83482560-83482579 None:intergenic 50.0%
TCGGAATGCGCATCCAGATT+AGG + chr4_1:83482561-83482580 None:intergenic 50.0%
CTTTGCAAAGCGTGGTGCTT+TGG + chr4_1:83482591-83482610 None:intergenic 50.0%
! AGGAGGTTTGACCATCGACT+TGG - chr4_1:83482689-83482708 Msa0578830:intron 50.0%
TACACCCCCATGTGACACTA+GGG - chr4_1:83483350-83483369 Msa0578830:intron 50.0%
TTCTCCCTAGTGTCACATGG+GGG + chr4_1:83483357-83483376 None:intergenic 50.0%
CTTCTCCCTAGTGTCACATG+GGG + chr4_1:83483358-83483377 None:intergenic 50.0%
CTCTTCTCCCTAGTGTCACA+TGG + chr4_1:83483360-83483379 None:intergenic 50.0%
TCTTCTCCCTAGTGCCACAT+GGG + chr4_1:83483496-83483515 None:intergenic 50.0%
AATGGTAACCAGGACCCCAA+TGG - chr4_1:83483662-83483681 Msa0578830:intron 50.0%
AATCATTGCCATTGGGGTCC+TGG + chr4_1:83483673-83483692 None:intergenic 50.0%
TCAGTGTAGTGTAGCACACG+AGG + chr4_1:83484279-83484298 None:intergenic 50.0%
TGGAGTGCGAATACCTGAAG+AGG - chr4_1:83484981-83485000 Msa0578830:intron 50.0%
AGTGCGAATACCTGAAGAGG+TGG - chr4_1:83484984-83485003 Msa0578830:intron 50.0%
AAGACCCAAACCACCTCTTC+AGG + chr4_1:83484997-83485016 None:intergenic 50.0%
GGAGCTTAGGGCTATGAAGA+TGG - chr4_1:83485054-83485073 Msa0578830:intron 50.0%
TGCAGCTTAAGCTCCGACCA+AGG - chr4_1:83481632-83481651 Msa0578830:intron 55.0%
TAAGCTCCGACCAAGGCAAG+TGG - chr4_1:83481639-83481658 Msa0578830:intron 55.0%
ACACCTCCACTTGCCTTGGT+CGG + chr4_1:83481648-83481667 None:intergenic 55.0%
AACCACACCTCCACTTGCCT+TGG + chr4_1:83481652-83481671 None:intergenic 55.0%
GGTTTCAAAACCGTAGGGCC+AGG - chr4_1:83481668-83481687 Msa0578830:intron 55.0%
GCTGATGCATACGCCAAACC+AGG + chr4_1:83482470-83482489 None:intergenic 55.0%
! CACATGGGGGTGTACAAGGA+TGG + chr4_1:83483344-83483363 None:intergenic 55.0%
! GTGTCACATGGGGGTGTACA+AGG + chr4_1:83483348-83483367 None:intergenic 55.0%
GTACACCCCCATGTGACACT+AGG - chr4_1:83483349-83483368 Msa0578830:intron 55.0%
TTCTCCCTAGTGCCACATGG+GGG + chr4_1:83483494-83483513 None:intergenic 55.0%
CTTCTCCCTAGTGCCACATG+GGG + chr4_1:83483495-83483514 None:intergenic 55.0%
CTCTTCTCCCTAGTGCCACA+TGG + chr4_1:83483497-83483516 None:intergenic 55.0%
GGAATGTATGCCACATGGGG+TGG - chr4_1:83483590-83483609 Msa0578830:intron 55.0%
! GATAGGTTGACCACCCCATG+TGG + chr4_1:83483603-83483622 None:intergenic 55.0%
! TAAACACGGACACGGTGCTG+TGG + chr4_1:83484241-83484260 None:intergenic 55.0%
CAGCACCGTGTCCGTGTTTA+TGG - chr4_1:83484241-83484260 Msa0578830:intron 55.0%
GGAAGAGGCTCAGAACTGTG+AGG + chr4_1:83485100-83485119 None:intergenic 55.0%
! TGGTGGTGACACGCTCACAT+CGG + chr4_1:83485147-83485166 None:intergenic 55.0%
!! TTTTTCGGCAGCGACTGTGG+CGG + chr4_1:83485176-83485195 None:intergenic 55.0%
GACCAAGGCAAGTGGAGGTG+TGG - chr4_1:83481647-83481666 Msa0578830:intron 60.0%
! CACATGGGGGTGTGCAAGGA+TGG + chr4_1:83483481-83483500 None:intergenic 60.0%
CATCCTTGCACACCCCCATG+TGG - chr4_1:83483479-83483498 Msa0578830:intron 60.0%
CACACCCCCATGTGGCACTA+GGG - chr4_1:83483487-83483506 Msa0578830:intron 60.0%
GTGGTGACACGCTCACATCG+GGG + chr4_1:83485145-83485164 None:intergenic 60.0%
GGTGGTGACACGCTCACATC+GGG + chr4_1:83485146-83485165 None:intergenic 60.0%
! GACTGTGGCGGTGGTATTGG+TGG + chr4_1:83485164-83485183 None:intergenic 60.0%
AGCGACTGTGGCGGTGGTAT+TGG + chr4_1:83485167-83485186 None:intergenic 60.0%
GCTCCGACCAAGGCAAGTGG+AGG - chr4_1:83481642-83481661 Msa0578830:intron 65.0%
! GTGCCACATGGGGGTGTGCA+AGG + chr4_1:83483485-83483504 None:intergenic 65.0%
GCACACCCCCATGTGGCACT+AGG - chr4_1:83483486-83483505 Msa0578830:intron 65.0%
CACTCGTGCACGATCGAGCG+TGG + chr4_1:83485272-83485291 None:intergenic 65.0%
TTCGGCAGCGACTGTGGCGG+TGG + chr4_1:83485173-83485192 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83480165 83485350 83480165 ID=Msa0578830;Name=Msa0578830
chr4_1 mRNA 83480165 83485350 83480165 ID=Msa0578830-mRNA-1;Parent=Msa0578830;Name=Msa0578830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=108|1|1|1|1|1|4|116|207
chr4_1 exon 83480165 83480557 83480165 ID=Msa0578830-mRNA-1:exon:30412;Parent=Msa0578830-mRNA-1
chr4_1 exon 83483826 83483905 83483826 ID=Msa0578830-mRNA-1:exon:30411;Parent=Msa0578830-mRNA-1
chr4_1 exon 83484074 83484243 83484074 ID=Msa0578830-mRNA-1:exon:30410;Parent=Msa0578830-mRNA-1
chr4_1 exon 83485146 83485350 83485146 ID=Msa0578830-mRNA-1:exon:30409;Parent=Msa0578830-mRNA-1
chr4_1 five_prime_UTR 83485243 83485350 83485243 ID=Msa0578830-mRNA-1:five_prime_utr;Parent=Msa0578830-mRNA-1
chr4_1 CDS 83485146 83485242 83485146 ID=Msa0578830-mRNA-1:cds;Parent=Msa0578830-mRNA-1
chr4_1 CDS 83484074 83484243 83484074 ID=Msa0578830-mRNA-1:cds;Parent=Msa0578830-mRNA-1
chr4_1 CDS 83483826 83483905 83483826 ID=Msa0578830-mRNA-1:cds;Parent=Msa0578830-mRNA-1
chr4_1 CDS 83480281 83480557 83480281 ID=Msa0578830-mRNA-1:cds;Parent=Msa0578830-mRNA-1
chr4_1 three_prime_UTR 83480165 83480280 83480165 ID=Msa0578830-mRNA-1:three_prime_utr;Parent=Msa0578830-mRNA-1
Gene Sequence

>Msa0578830

ATGGCAGTTTTACCTACAAGTTCCTCCAGCTTGGAATTGACCATATCTATCCCAGGCTTTGCTTCTTCACCAATTTCTTTTCTCCCCTCATCATCTGTGAAAAAGTTGGATGTGAACCGAGTAACCGTAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGACACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACTGAACAAAACCGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGATGGATCCACCTACTGTGTTATCTCCTCACAGTTCTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCACAGTCGCTGCCGAAAAATTAGTCATTGATGCCGTCATTTTGTCCCCTAGAGTGTGA

Protein sequence

>Msa0578830

MAVLPTSSSSLELTISIPGFASSPISFLPSSSVKKLDVNRVTVEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKMDPPTVLSPHSSEPLPASTLSMCPRCERVTTNTTATVAAEKLVIDAVILSPRV*