AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0088800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088800 MtrunA17_Chr1g0206651 94.841 252 13 0 1 252 1 252 0.0 500
Msa0088800 MtrunA17_Chr1g0206601 72.266 256 65 4 1 251 22 276 1.48e-134 380
Msa0088800 MtrunA17_Chr1g0206581 67.925 265 69 6 1 251 18 280 1.11e-125 358
Msa0088800 MtrunA17_Chr1g0154341 56.048 248 102 4 10 251 7 253 3.94e-93 275
Msa0088800 MtrunA17_Chr1g0154361 56.327 245 100 3 12 250 8 251 1.84e-92 275
Msa0088800 MtrunA17_Chr1g0206571 55.411 231 101 2 23 252 30 259 1.32e-85 257
Msa0088800 MtrunA17_Chr1g0154321 54.582 251 102 6 12 251 8 257 3.06e-85 269
Msa0088800 MtrunA17_Chr1g0154351 54.251 247 105 4 12 251 8 253 3.26e-84 264
Msa0088800 MtrunA17_Chr1g0154311 52.846 246 107 4 13 251 10 253 9.34e-80 253
Msa0088800 MtrunA17_Chr1g0206531 50.391 256 115 6 1 250 1 250 1.86e-77 246
Msa0088800 MtrunA17_Chr1g0154371 51.953 256 111 5 1 246 8 261 7.79e-76 242
Msa0088800 MtrunA17_Chr5g0428591 48.770 244 117 4 10 251 8 245 3.33e-74 227
Msa0088800 MtrunA17_Chr1g0206461 48.031 254 121 6 1 250 1 247 4.07e-71 229
Msa0088800 MtrunA17_Chr1g0206451 50.204 245 115 4 7 249 45 284 2.22e-66 218
Msa0088800 MtrunA17_Chr5g0428571 48.684 228 111 3 24 251 25 246 4.80e-66 214
Msa0088800 MtrunA17_Chr1g0206521 48.980 245 117 4 7 250 653 890 1.74e-63 214
Msa0088800 MtrunA17_Chr1g0206521 48.101 237 115 4 15 250 19 248 1.09e-59 203
Msa0088800 MtrunA17_Chr5g0428531 43.725 247 126 5 10 250 8 247 1.62e-61 195
Msa0088800 MtrunA17_Chr1g0206561 42.975 242 128 4 11 252 9 240 3.47e-56 190
Msa0088800 MtrunA17_Chr5g0426941 41.564 243 128 5 14 252 10 242 9.44e-53 181
Msa0088800 MtrunA17_Chr1g0206381 40.541 222 118 5 39 252 38 253 1.72e-49 165
Msa0088800 MtrunA17_Chr1g0206401 39.640 222 120 6 39 252 33 248 2.91e-45 160
Msa0088800 MtrunA17_Chr7g0234231 32.231 242 155 4 9 250 5 237 1.25e-40 140
Msa0088800 MtrunA17_Chr1g0206331 34.553 246 149 7 11 251 15 253 5.61e-35 132
Msa0088800 MtrunA17_Chr5g0428601 50.400 125 60 2 127 251 1 123 8.44e-34 125
Msa0088800 MtrunA17_Chr6g0475121 33.077 260 158 6 1 252 1 252 2.23e-32 124
Msa0088800 MtrunA17_Chr6g0475121 32.353 204 126 6 50 250 296 490 1.72e-22 95.9
Msa0088800 MtrunA17_Chr2g0323011 31.727 249 155 7 4 249 7 243 3.11e-32 118
Msa0088800 MtrunA17_Chr1g0205771 31.455 213 140 3 41 251 51 259 3.64e-31 121
Msa0088800 MtrunA17_Chr5g0394001 32.636 239 152 6 16 250 16 249 1.42e-30 119
Msa0088800 MtrunA17_Chr6g0474901 29.961 257 163 7 1 252 1 245 2.57e-29 116
Msa0088800 MtrunA17_Chr6g0474901 31.416 226 136 7 28 250 274 483 1.50e-22 96.3
Msa0088800 MtrunA17_Chr6g0475201 30.620 258 166 5 1 252 1 251 2.94e-29 115
Msa0088800 MtrunA17_Chr6g0475201 32.627 236 138 8 20 250 271 490 8.56e-27 108
Msa0088800 MtrunA17_Chr1g0206201 33.028 218 128 6 43 252 48 255 1.03e-28 110
Msa0088800 MtrunA17_Chr5g0393981 29.457 258 161 8 1 250 73 317 2.24e-28 113
Msa0088800 MtrunA17_Chr6g0475001 31.873 251 155 8 11 252 9 252 4.01e-28 112
Msa0088800 MtrunA17_Chr6g0475001 31.556 225 136 8 28 250 281 489 9.19e-19 85.1
Msa0088800 MtrunA17_Chr2g0322981 29.921 254 161 7 1 251 6 245 1.10e-27 106
Msa0088800 MtrunA17_Chr3g0081001 29.762 252 162 5 4 251 6 246 1.12e-27 111
Msa0088800 MtrunA17_Chr5g0394021 35.047 214 133 3 38 250 39 247 2.22e-27 110
Msa0088800 MtrunA17_Chr1g0206351 31.905 210 137 3 45 251 48 254 2.48e-27 110
Msa0088800 MtrunA17_Chr6g0474811 30.268 261 165 6 1 252 1 253 7.80e-27 108
Msa0088800 MtrunA17_Chr6g0474811 32.843 204 125 6 50 250 298 492 2.71e-20 89.7
Msa0088800 MtrunA17_Chr6g0474971 29.961 257 163 7 1 252 1 245 6.70e-26 103
Msa0088800 MtrunA17_Chr1g0206231 31.905 210 133 6 47 252 52 255 9.31e-26 105
Msa0088800 MtrunA17_Chr8g0347571 31.727 249 148 9 9 250 9 242 1.22e-25 105
Msa0088800 MtrunA17_Chr8g0347571 28.194 227 142 8 32 251 276 488 1.55e-16 79.0
Msa0088800 MtrunA17_Chr3g0081011 29.832 238 151 6 18 251 20 245 1.42e-25 105
Msa0088800 MtrunA17_Chr6g0474871 30.233 258 166 6 1 252 1 250 1.87e-25 104
Msa0088800 MtrunA17_Chr6g0474871 32.768 177 110 5 77 250 317 487 6.69e-19 85.9
Msa0088800 MtrunA17_Chr6g0475111 29.555 247 163 6 9 250 12 252 1.79e-24 102
Msa0088800 MtrunA17_Chr6g0475111 26.316 247 163 8 14 251 266 502 1.10e-17 82.4
Msa0088800 MtrunA17_Chr1g0206361 31.651 218 138 6 37 250 43 253 6.40e-24 100
Msa0088800 MtrunA17_Chr3g0081051 29.675 246 159 6 9 249 3 239 1.50e-23 95.9
Msa0088800 MtrunA17_Chr8g0354271 29.482 251 160 8 7 251 10 249 3.42e-23 98.2
Msa0088800 MtrunA17_Chr3g0081031 30.488 246 154 8 11 250 24 258 3.88e-23 98.2
Msa0088800 MtrunA17_Chr6g0475091 30.544 239 156 5 20 252 27 261 3.91e-23 98.2
Msa0088800 MtrunA17_Chr6g0475091 32.218 239 142 8 19 250 274 499 2.69e-20 89.7
Msa0088800 MtrunA17_Chr1g0206291 29.389 262 164 9 2 252 15 266 5.60e-22 94.4
Msa0088800 MtrunA17_Chr5g0394011 30.093 216 140 6 41 250 41 251 7.54e-22 94.4
Msa0088800 MtrunA17_Chr6g0474861 31.765 255 157 10 1 250 1 243 2.29e-21 92.8
Msa0088800 MtrunA17_Chr8g0354351 27.273 242 164 5 11 251 13 243 9.78e-21 90.9
Msa0088800 MtrunA17_Chr2g0280391 24.800 250 172 4 9 250 5 246 5.21e-19 84.0
Msa0088800 MtrunA17_Chr1g0206251 31.754 211 129 7 47 250 307 509 1.38e-18 84.7
Msa0088800 MtrunA17_Chr1g0206251 29.902 204 123 10 61 251 69 265 2.78e-13 68.9
Msa0088800 MtrunA17_Chr8g0354421 25.200 250 169 8 10 251 31 270 2.22e-17 81.3
Msa0088800 MtrunA17_Chr1g0206411 56.897 58 25 0 61 118 4 61 3.44e-17 74.3
Msa0088800 MtrunA17_Chr1g0206421 30.189 159 93 5 67 216 2 151 4.45e-17 80.1
Msa0088800 MtrunA17_Chr8g0354341 30.723 166 108 4 86 251 88 246 1.32e-16 77.0
Msa0088800 MtrunA17_Chr8g0354441 24.314 255 166 10 10 250 14 255 3.35e-16 77.8
Msa0088800 MtrunA17_Chr3g0119041 29.808 208 118 8 64 251 63 262 4.89e-16 77.4
Msa0088800 MtrunA17_Chr2g0280361 27.027 185 125 4 67 250 66 241 5.27e-16 75.5
Msa0088800 MtrunA17_Chr8g0354411 24.537 216 147 6 42 250 41 247 4.68e-15 73.6
Msa0088800 MtrunA17_Chr3g0082951 39.091 110 62 3 28 136 116 221 1.94e-13 67.8
Msa0088800 MtrunA17_Chr7g0230381 26.667 195 122 6 58 251 74 248 2.06e-13 68.2
Msa0088800 MtrunA17_Chr8g0354281 23.005 213 149 6 45 251 44 247 4.06e-13 68.6
Msa0088800 MtrunA17_Chr2g0280381 23.810 189 132 4 65 252 65 242 6.21e-12 63.9
Msa0088800 MtrunA17_Chr8g0354431 24.800 250 170 7 10 251 9 248 1.09e-11 64.3
Msa0088800 MtrunA17_Chr8g0391511 22.749 211 144 5 38 244 39 234 1.60e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088800 AT4G21410.2 38.532 218 127 4 37 251 38 251 2.34e-39 143
Msa0088800 AT4G21410.3 38.532 218 127 4 37 251 38 251 7.09e-39 143
Msa0088800 AT3G22060.1 33.473 239 152 4 15 252 19 251 6.11e-37 131
Msa0088800 AT4G38830.1 36.697 218 132 4 35 250 32 245 3.95e-36 135
Msa0088800 AT4G21400.3 34.419 215 136 3 39 251 42 253 9.68e-35 130
Msa0088800 AT4G21400.6 34.419 215 136 3 39 251 42 253 1.32e-34 130
Msa0088800 AT4G21400.4 34.419 215 136 3 39 251 42 253 1.32e-34 130
Msa0088800 AT4G21400.5 34.419 215 136 3 39 251 42 253 1.32e-34 130
Msa0088800 AT4G21400.2 34.419 215 136 3 39 251 42 253 2.25e-34 130
Msa0088800 AT4G21400.1 34.419 215 136 3 39 251 42 253 2.83e-34 130
Msa0088800 AT4G05200.2 35.060 251 148 8 5 250 26 266 4.55e-34 130
Msa0088800 AT4G05200.1 35.060 251 148 8 5 250 8 248 4.82e-34 129
Msa0088800 AT4G21230.1 37.443 219 118 7 37 250 37 241 1.23e-32 125
Msa0088800 AT4G23220.1 32.243 214 144 1 39 251 29 242 2.35e-32 125
Msa0088800 AT4G23160.1 36.441 236 134 8 21 250 37 262 2.89e-32 124
Msa0088800 AT4G23180.3 34.632 231 142 5 21 250 31 253 3.69e-32 123
Msa0088800 AT4G23160.3 36.441 236 134 8 21 250 617 842 5.04e-32 124
Msa0088800 AT4G23160.2 36.441 236 134 8 21 250 617 842 5.04e-32 124
Msa0088800 AT4G23180.2 34.632 231 142 5 21 250 31 253 6.24e-32 123
Msa0088800 AT4G23180.1 34.632 231 142 5 21 250 31 253 9.79e-32 123
Msa0088800 AT4G23170.1 35.443 237 135 9 21 250 20 245 1.37e-31 117
Msa0088800 AT4G23280.3 36.620 213 123 5 41 250 39 242 5.59e-31 120
Msa0088800 AT4G23280.2 36.620 213 123 5 41 250 39 242 6.04e-31 120
Msa0088800 AT4G23280.1 36.620 213 123 5 41 250 39 242 6.19e-31 120
Msa0088800 AT4G23200.2 31.308 214 142 2 41 249 30 243 7.09e-31 119
Msa0088800 AT4G23200.1 31.308 214 142 2 41 249 30 243 1.91e-30 119
Msa0088800 AT4G21400.7 36.000 175 108 2 78 251 56 227 2.70e-30 119
Msa0088800 AT4G23150.1 36.449 214 125 7 41 250 39 245 1.70e-29 116
Msa0088800 AT4G00970.2 37.838 185 105 5 66 246 79 257 6.77e-29 114
Msa0088800 AT4G00970.1 37.838 185 105 5 66 246 79 257 1.05e-28 114
Msa0088800 AT4G23130.3 35.238 210 125 6 45 251 44 245 2.00e-27 110
Msa0088800 AT4G23130.1 35.238 210 125 6 45 251 44 245 2.01e-27 110
Msa0088800 AT4G23130.2 35.238 210 125 6 45 251 44 245 2.29e-27 110
Msa0088800 AT4G23250.1 29.915 234 142 5 32 250 30 256 6.24e-27 109
Msa0088800 AT4G23250.3 29.915 234 142 5 32 250 30 256 6.34e-27 109
Msa0088800 AT4G23250.2 29.915 234 142 5 32 250 30 256 7.32e-27 109
Msa0088800 AT4G23250.2 26.471 204 125 4 47 250 741 919 5.66e-15 74.7
Msa0088800 AT4G23140.2 34.722 216 126 7 41 250 40 246 9.54e-27 108
Msa0088800 AT4G23140.1 34.722 216 126 7 41 250 40 246 1.12e-26 108
Msa0088800 AT4G23230.1 35.047 214 126 7 41 250 37 241 3.24e-26 107
Msa0088800 AT3G45860.1 35.185 216 123 6 41 250 43 247 2.78e-25 104
Msa0088800 AT4G20640.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G20630.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G20580.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G20600.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G20620.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G20610.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G20590.1 30.980 255 162 7 5 251 7 255 4.23e-25 100
Msa0088800 AT4G23210.1 29.084 251 156 6 12 249 9 250 4.46e-25 103
Msa0088800 AT4G20670.1 30.980 255 162 7 5 251 7 255 5.09e-25 100
Msa0088800 AT4G20570.1 30.980 255 162 7 5 251 21 269 5.22e-25 100
Msa0088800 AT4G20560.1 30.980 255 162 7 5 251 21 269 5.22e-25 100
Msa0088800 AT4G20540.1 30.980 255 162 7 5 251 21 269 5.22e-25 100
Msa0088800 AT4G20645.1 30.980 255 162 7 5 251 21 269 5.22e-25 100
Msa0088800 AT4G20530.1 30.980 255 162 7 5 251 21 269 5.22e-25 100
Msa0088800 AT4G20550.1 30.980 255 162 7 5 251 21 269 5.22e-25 100
Msa0088800 AT4G23210.2 29.084 251 156 6 12 249 9 250 5.57e-25 103
Msa0088800 AT4G23210.4 29.084 251 156 6 12 249 9 250 5.57e-25 103
Msa0088800 AT4G23210.5 29.084 251 156 6 12 249 9 250 6.39e-25 103
Msa0088800 AT4G11460.1 29.545 220 145 4 39 249 32 250 6.43e-25 103
Msa0088800 AT4G11460.3 29.545 220 145 4 39 249 32 250 6.67e-25 103
Msa0088800 AT4G23210.3 29.084 251 156 6 12 249 9 250 6.94e-25 103
Msa0088800 AT5G48540.1 29.098 244 158 6 11 250 9 241 9.16e-25 99.4
Msa0088800 AT4G23300.1 28.761 226 143 4 37 249 30 250 2.00e-24 102
Msa0088800 AT4G11530.1 27.727 220 147 3 39 249 30 246 2.15e-24 102
Msa0088800 AT3G21990.1 30.612 245 157 6 13 251 18 255 3.77e-24 97.8
Msa0088800 AT4G23270.2 31.837 245 153 7 10 250 6 240 5.81e-24 100
Msa0088800 AT4G23270.1 31.837 245 153 7 10 250 6 240 5.81e-24 100
Msa0088800 AT4G23270.3 31.837 245 153 7 10 250 6 240 5.93e-24 100
Msa0088800 AT4G23240.1 30.918 207 138 3 47 250 41 245 7.06e-24 100
Msa0088800 AT4G23310.2 34.286 210 124 7 45 250 156 355 7.26e-24 100
Msa0088800 AT2G31620.1 29.817 218 144 4 36 249 40 252 7.57e-24 97.1
Msa0088800 AT4G23310.1 34.450 209 125 6 45 250 156 355 7.87e-24 100
Msa0088800 AT4G11521.1 27.273 231 154 3 27 249 17 241 1.81e-23 96.3
Msa0088800 AT3G58310.1 28.807 243 159 6 15 252 23 256 2.67e-23 95.5
Msa0088800 AT4G23190.2 28.959 221 147 4 37 249 30 248 2.84e-23 98.6
Msa0088800 AT4G23190.1 28.959 221 147 4 37 249 30 248 2.93e-23 99.0
Msa0088800 AT4G11490.1 28.440 218 146 3 10 222 8 220 2.02e-21 93.6
Msa0088800 AT1G61750.1 29.680 219 147 4 29 245 28 241 2.40e-21 91.7
Msa0088800 AT4G04500.2 29.384 211 134 5 55 252 47 255 3.59e-21 92.4
Msa0088800 AT4G04500.3 29.384 211 134 5 55 252 47 255 3.59e-21 92.4
Msa0088800 AT4G04500.1 29.384 211 134 5 55 252 47 255 5.56e-21 92.0
Msa0088800 AT4G21410.1 42.520 127 70 2 127 251 1 126 6.82e-21 91.7
Msa0088800 AT3G21960.1 29.730 222 144 5 36 251 46 261 1.72e-20 88.2
Msa0088800 AT4G21400.8 38.889 126 76 1 127 251 1 126 1.83e-20 90.5
Msa0088800 AT3G21910.1 28.916 249 158 9 13 249 24 265 6.75e-20 86.7
Msa0088800 AT4G23260.2 26.009 223 158 3 32 249 30 250 7.78e-20 89.0
Msa0088800 AT4G23260.1 26.009 223 158 3 32 249 30 250 9.02e-20 88.6
Msa0088800 AT4G23290.2 28.959 221 143 7 38 249 31 246 8.49e-19 85.9
Msa0088800 AT5G41290.1 28.708 209 139 7 43 247 42 244 1.13e-18 83.6
Msa0088800 AT3G21940.2 34.973 183 96 6 88 252 3 180 1.20e-18 81.3
Msa0088800 AT4G04570.2 26.761 213 148 3 45 250 40 251 2.74e-18 84.3
Msa0088800 AT4G11480.2 22.439 205 157 2 45 249 36 238 2.88e-18 84.0
Msa0088800 AT4G04570.1 26.761 213 148 3 45 250 40 251 3.04e-18 84.3
Msa0088800 AT4G11480.4 22.549 204 156 2 46 249 37 238 3.46e-18 84.0
Msa0088800 AT4G11480.3 22.549 204 156 2 46 249 37 238 3.74e-18 84.0
Msa0088800 AT4G11480.1 22.549 204 156 2 46 249 37 238 4.16e-18 84.0
Msa0088800 AT3G21940.1 32.636 239 125 11 36 252 51 275 4.93e-18 81.6
Msa0088800 AT1G63600.1 28.796 191 114 4 67 245 72 252 8.03e-18 81.6
Msa0088800 AT4G11460.2 30.114 176 113 4 83 249 1 175 8.20e-18 82.8
Msa0088800 AT1G70690.1 26.087 253 158 10 1 245 2 233 1.99e-17 80.1
Msa0088800 AT3G21920.1 28.125 256 153 10 13 249 24 267 4.07e-17 79.0
Msa0088800 AT3G21920.2 28.125 256 153 10 13 249 46 289 6.14e-17 79.0
Msa0088800 AT3G22010.1 28.261 230 136 9 38 252 48 263 6.60e-17 78.2
Msa0088800 AT4G23190.3 28.488 172 114 3 85 249 1 170 9.49e-17 79.7
Msa0088800 AT4G23190.4 28.488 172 114 3 85 249 1 170 9.49e-17 79.7
Msa0088800 AT3G29040.1 29.435 248 157 8 12 249 13 252 1.06e-16 77.4
Msa0088800 AT1G63570.3 27.513 189 116 3 68 246 64 241 1.27e-16 77.8
Msa0088800 AT1G63570.1 27.513 189 116 3 68 246 64 241 1.27e-16 77.8
Msa0088800 AT4G11470.1 26.761 213 143 6 47 250 38 246 1.61e-16 79.0
Msa0088800 AT4G11470.2 26.761 213 143 6 47 250 43 251 1.68e-16 79.0
Msa0088800 AT1G63570.2 27.513 189 116 3 68 246 117 294 1.80e-16 78.2
Msa0088800 AT3G21930.1 27.734 256 154 10 13 249 24 267 1.86e-16 77.4
Msa0088800 AT1G63550.1 24.255 235 145 5 26 246 30 245 1.97e-16 77.8
Msa0088800 AT4G04540.3 24.889 225 154 6 39 250 32 254 2.16e-16 78.6
Msa0088800 AT4G04540.4 24.889 225 154 6 39 250 32 254 2.37e-16 78.6
Msa0088800 AT4G04540.2 24.889 225 154 6 39 250 32 254 2.62e-16 78.6
Msa0088800 AT4G04540.1 24.889 225 154 6 39 250 32 254 2.82e-16 78.6
Msa0088800 AT3G22040.1 27.734 256 156 10 12 252 16 257 6.12e-16 75.5
Msa0088800 AT4G04510.2 26.244 221 146 4 41 250 36 250 1.56e-15 76.3
Msa0088800 AT4G04510.1 26.244 221 146 4 41 250 34 248 1.58e-15 76.3
Msa0088800 AT4G04490.1 28.017 232 144 9 29 249 27 246 2.67e-15 75.5
Msa0088800 AT5G41280.1 26.230 183 126 4 68 246 67 244 2.81e-15 73.9
Msa0088800 AT3G21970.1 28.175 252 158 10 12 249 19 261 6.07e-15 72.8
Msa0088800 AT4G20680.1 28.444 225 144 8 39 252 49 267 6.36e-15 72.8
Msa0088800 AT3G22050.1 29.293 198 110 7 67 249 73 255 7.67e-15 72.4
Msa0088800 AT3G29050.2 28.352 261 154 10 13 249 22 273 1.17e-14 72.4
Msa0088800 AT3G22000.1 28.696 230 137 10 39 252 49 267 2.88e-14 71.2
Msa0088800 AT5G41300.1 25.210 238 168 5 10 244 15 245 5.12e-14 70.5
Msa0088800 AT3G21900.2 26.291 213 147 5 37 249 45 247 9.23e-14 69.3
Msa0088800 AT2G01660.2 26.744 258 151 11 1 247 2 232 1.08e-13 69.3
Msa0088800 AT1G63580.1 25.000 212 137 4 46 245 36 237 1.20e-13 69.3
Msa0088800 AT2G01660.1 26.744 258 151 11 1 247 2 232 1.26e-13 69.3
Msa0088800 AT2G01660.3 26.744 258 151 11 1 247 2 232 1.36e-13 69.3
Msa0088800 AT1G63590.1 26.000 200 125 6 59 245 55 244 1.54e-13 68.9
Msa0088800 AT5G37660.1 23.770 244 156 9 11 246 16 237 7.34e-11 61.6
Msa0088800 AT5G37660.2 23.605 233 152 8 18 246 27 237 7.81e-11 61.6

Find 41 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGTTGGTACAATATTT+TGG 0.104488 1_2:+69932884 None:intergenic
TATTCAGACCGTTCGATATT+AGG 0.205684 1_2:-69933166 Msa0088800:CDS
TGCTTTAGGTTTGATAGAAT+TGG 0.336798 1_2:+69932813 None:intergenic
GGTTTACTTTGTCCTCGTTT+TGG 0.340580 1_2:+69933332 None:intergenic
ATGAGAAGGAGGAAGGAATA+TGG 0.349250 1_2:+69933532 None:intergenic
AGACATTTGCGACAATCTTC+AGG 0.362672 1_2:+69933280 None:intergenic
GGTTTCTACAATACAAATTA+CGG 0.363088 1_2:-69933355 Msa0088800:CDS
AGTAGTGATCAAACAATATA+TGG 0.388142 1_2:-69932980 Msa0088800:CDS
TGGACATGCTTGTGTTAGAT+AGG 0.389375 1_2:+69933243 None:intergenic
AAATATTGTACCAACAAGAT+TGG 0.404642 1_2:-69932881 Msa0088800:CDS
AATTCTACAACCAATCTTGT+TGG 0.410248 1_2:+69932871 None:intergenic
TTAGAGCAAGCTGTTATTTG+AGG 0.415196 1_2:-69932847 Msa0088800:CDS
AAATGTGGCCTGCTATAATT+TGG 0.425646 1_2:-69933135 Msa0088800:CDS
ACAGTGTACACCTGATTTGT+CGG 0.437811 1_2:-69932951 Msa0088800:CDS
CCAAACAGAAAAGAAGCAAT+TGG 0.439075 1_2:-69933223 Msa0088800:CDS
CGTTTACTTTAGATGTGAAA+AGG 0.440701 1_2:+69933506 None:intergenic
CACTGTGAAACCGACAAATC+AGG 0.458317 1_2:+69932941 None:intergenic
GAATGTGAACAATGCAACTT+TGG 0.483957 1_2:-69933110 Msa0088800:CDS
TATATTGTTTGATCACTACT+AGG 0.502209 1_2:+69932983 None:intergenic
GAGGACAAAGTAAACCTCAT+TGG 0.502261 1_2:-69933325 Msa0088800:CDS
TATGCTGCAGGAACTTTGCC+AGG 0.503711 1_2:-69933007 Msa0088800:CDS
TTCAACTCAAAAGTTAACTA+CGG 0.507432 1_2:-69933376 Msa0088800:CDS
GATAGAGGCGACTACATAAC+CGG 0.514752 1_2:-69933445 Msa0088800:CDS
GTTGTTATGGTAGGTACTAC+CGG 0.518720 1_2:+69933426 None:intergenic
AAGGATTATGAGAAGGAGGA+AGG 0.529566 1_2:+69933525 None:intergenic
ACATTCCACCAAATTATAGC+AGG 0.535057 1_2:+69933127 None:intergenic
TGAAAAGGATTATGAGAAGG+AGG 0.542640 1_2:+69933521 None:intergenic
TCACATCGTAAGTATGCTGC+AGG 0.560986 1_2:-69933019 Msa0088800:CDS
TAGTGTGGTGAAACAATTGT+TGG 0.565498 1_2:-69933074 Msa0088800:CDS
ATGTGAAAAGGATTATGAGA+AGG 0.570955 1_2:+69933518 None:intergenic
TGTGGCCTGCTATAATTTGG+TGG 0.578852 1_2:-69933132 Msa0088800:CDS
GGCAGATCAATTCAATAGTG+TGG 0.581827 1_2:-69933089 Msa0088800:CDS
CTCCTCTACATATTCCAATG+AGG 0.587463 1_2:+69933311 None:intergenic
CGCTGAGGCCTAATATCGAA+CGG 0.598988 1_2:+69933158 None:intergenic
AACCTCATTGGAATATGTAG+AGG 0.614721 1_2:-69933313 Msa0088800:CDS
ACAGAAAAGAAGCAATTGGA+TGG 0.618085 1_2:-69933219 Msa0088800:CDS
GTTTGATCACTACTAGGACC+TGG 0.622316 1_2:+69932989 None:intergenic
TATTAGGCCTCAGCGAAATG+TGG 0.638853 1_2:-69933150 Msa0088800:CDS
TACAAATTACGGCCAAAACG+AGG 0.648241 1_2:-69933344 Msa0088800:CDS
AGAAGCAATTGGATGGTACG+AGG 0.694836 1_2:-69933212 Msa0088800:CDS
TAGCAGGCCACATTTCGCTG+AGG 0.701616 1_2:+69933143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTTTGTCACATAAAT+AGG + chr1_2:69932905-69932924 None:intergenic 20.0%
!!! GTTATTTTTGTCACATAAAT+AGG + chr1_2:69932905-69932924 None:intergenic 20.0%
! TTCAACTCAAAAGTTAACTA+CGG - chr1_2:69932994-69933013 Msa0088800:CDS 25.0%
! GGTTTCTACAATACAAATTA+CGG - chr1_2:69933015-69933034 Msa0088800:CDS 25.0%
! TTAAAAAACAAGGCTAGAAA+TGG - chr1_2:69933324-69933343 Msa0088800:CDS 25.0%
! TATATTGTTTGATCACTACT+AGG + chr1_2:69933390-69933409 None:intergenic 25.0%
! AGTAGTGATCAAACAATATA+TGG - chr1_2:69933390-69933409 Msa0088800:CDS 25.0%
!! TCTTGTTGGTACAATATTTT+GGG + chr1_2:69933488-69933507 None:intergenic 25.0%
!! ATCTTGTTGGTACAATATTT+TGG + chr1_2:69933489-69933508 None:intergenic 25.0%
! AAATATTGTACCAACAAGAT+TGG - chr1_2:69933489-69933508 Msa0088800:CDS 25.0%
! TTCAACTCAAAAGTTAACTA+CGG - chr1_2:69932994-69933013 Msa0088800:CDS 25.0%
! GGTTTCTACAATACAAATTA+CGG - chr1_2:69933015-69933034 Msa0088800:CDS 25.0%
! TTAAAAAACAAGGCTAGAAA+TGG - chr1_2:69933324-69933343 Msa0088800:CDS 25.0%
! TATATTGTTTGATCACTACT+AGG + chr1_2:69933390-69933409 None:intergenic 25.0%
! AGTAGTGATCAAACAATATA+TGG - chr1_2:69933390-69933409 Msa0088800:CDS 25.0%
!! TCTTGTTGGTACAATATTTT+GGG + chr1_2:69933488-69933507 None:intergenic 25.0%
!! ATCTTGTTGGTACAATATTT+TGG + chr1_2:69933489-69933508 None:intergenic 25.0%
! AAATATTGTACCAACAAGAT+TGG - chr1_2:69933489-69933508 Msa0088800:CDS 25.0%
ATGTGAAAAGGATTATGAGA+AGG + chr1_2:69932855-69932874 None:intergenic 30.0%
CGTTTACTTTAGATGTGAAA+AGG + chr1_2:69932867-69932886 None:intergenic 30.0%
TGTGACAAAAATAACGATAG+AGG - chr1_2:69932910-69932929 Msa0088800:CDS 30.0%
!!! TAACTTTTGAGTTGAAAGTC+AGG + chr1_2:69932990-69933009 None:intergenic 30.0%
GTTGGACGATTTAAAAAACA+AGG - chr1_2:69933314-69933333 Msa0088800:CDS 30.0%
AATTCTACAACCAATCTTGT+TGG + chr1_2:69933502-69933521 None:intergenic 30.0%
ATGTGAAAAGGATTATGAGA+AGG + chr1_2:69932855-69932874 None:intergenic 30.0%
CGTTTACTTTAGATGTGAAA+AGG + chr1_2:69932867-69932886 None:intergenic 30.0%
TGTGACAAAAATAACGATAG+AGG - chr1_2:69932910-69932929 Msa0088800:CDS 30.0%
!!! TAACTTTTGAGTTGAAAGTC+AGG + chr1_2:69932990-69933009 None:intergenic 30.0%
GTTGGACGATTTAAAAAACA+AGG - chr1_2:69933314-69933333 Msa0088800:CDS 30.0%
AATTCTACAACCAATCTTGT+TGG + chr1_2:69933502-69933521 None:intergenic 30.0%
TGAAAAGGATTATGAGAAGG+AGG + chr1_2:69932852-69932871 None:intergenic 35.0%
!!! GATTTTGAGGTTGTTATGGT+AGG + chr1_2:69932956-69932975 None:intergenic 35.0%
!!! AAGCGATTTTGAGGTTGTTA+TGG + chr1_2:69932960-69932979 None:intergenic 35.0%
! GGTATATGAAAGCGATTTTG+AGG + chr1_2:69932969-69932988 None:intergenic 35.0%
AACCTCATTGGAATATGTAG+AGG - chr1_2:69933057-69933076 Msa0088800:CDS 35.0%
! CCAATTGCTTCTTTTCTGTT+TGG + chr1_2:69933150-69933169 None:intergenic 35.0%
CCAAACAGAAAAGAAGCAAT+TGG - chr1_2:69933147-69933166 Msa0088800:CDS 35.0%
ACAGAAAAGAAGCAATTGGA+TGG - chr1_2:69933151-69933170 Msa0088800:CDS 35.0%
TATTCAGACCGTTCGATATT+AGG - chr1_2:69933204-69933223 Msa0088800:CDS 35.0%
AAATGTGGCCTGCTATAATT+TGG - chr1_2:69933235-69933254 Msa0088800:CDS 35.0%
ACATTCCACCAAATTATAGC+AGG + chr1_2:69933246-69933265 None:intergenic 35.0%
GAATGTGAACAATGCAACTT+TGG - chr1_2:69933260-69933279 Msa0088800:CDS 35.0%
TAGTGTGGTGAAACAATTGT+TGG - chr1_2:69933296-69933315 Msa0088800:CDS 35.0%
! TTAGAGCAAGCTGTTATTTG+AGG - chr1_2:69933523-69933542 Msa0088800:CDS 35.0%
TGAAAAGGATTATGAGAAGG+AGG + chr1_2:69932852-69932871 None:intergenic 35.0%
!!! GATTTTGAGGTTGTTATGGT+AGG + chr1_2:69932956-69932975 None:intergenic 35.0%
!!! AAGCGATTTTGAGGTTGTTA+TGG + chr1_2:69932960-69932979 None:intergenic 35.0%
! GGTATATGAAAGCGATTTTG+AGG + chr1_2:69932969-69932988 None:intergenic 35.0%
AACCTCATTGGAATATGTAG+AGG - chr1_2:69933057-69933076 Msa0088800:CDS 35.0%
! CCAATTGCTTCTTTTCTGTT+TGG + chr1_2:69933150-69933169 None:intergenic 35.0%
CCAAACAGAAAAGAAGCAAT+TGG - chr1_2:69933147-69933166 Msa0088800:CDS 35.0%
ACAGAAAAGAAGCAATTGGA+TGG - chr1_2:69933151-69933170 Msa0088800:CDS 35.0%
TATTCAGACCGTTCGATATT+AGG - chr1_2:69933204-69933223 Msa0088800:CDS 35.0%
AAATGTGGCCTGCTATAATT+TGG - chr1_2:69933235-69933254 Msa0088800:CDS 35.0%
ACATTCCACCAAATTATAGC+AGG + chr1_2:69933246-69933265 None:intergenic 35.0%
GAATGTGAACAATGCAACTT+TGG - chr1_2:69933260-69933279 Msa0088800:CDS 35.0%
TAGTGTGGTGAAACAATTGT+TGG - chr1_2:69933296-69933315 Msa0088800:CDS 35.0%
! TTAGAGCAAGCTGTTATTTG+AGG - chr1_2:69933523-69933542 Msa0088800:CDS 35.0%
ATGAGAAGGAGGAAGGAATA+TGG + chr1_2:69932841-69932860 None:intergenic 40.0%
AAGGATTATGAGAAGGAGGA+AGG + chr1_2:69932848-69932867 None:intergenic 40.0%
GTTGTTATGGTAGGTACTAC+CGG + chr1_2:69932947-69932966 None:intergenic 40.0%
TACAAATTACGGCCAAAACG+AGG - chr1_2:69933026-69933045 Msa0088800:CDS 40.0%
! GGTTTACTTTGTCCTCGTTT+TGG + chr1_2:69933041-69933060 None:intergenic 40.0%
GAGGACAAAGTAAACCTCAT+TGG - chr1_2:69933045-69933064 Msa0088800:CDS 40.0%
CTCCTCTACATATTCCAATG+AGG + chr1_2:69933062-69933081 None:intergenic 40.0%
AGACATTTGCGACAATCTTC+AGG + chr1_2:69933093-69933112 None:intergenic 40.0%
TGGACATGCTTGTGTTAGAT+AGG + chr1_2:69933130-69933149 None:intergenic 40.0%
GGCAGATCAATTCAATAGTG+TGG - chr1_2:69933281-69933300 Msa0088800:CDS 40.0%
! ACAGTGTACACCTGATTTGT+CGG - chr1_2:69933419-69933438 Msa0088800:CDS 40.0%
ATGAGAAGGAGGAAGGAATA+TGG + chr1_2:69932841-69932860 None:intergenic 40.0%
AAGGATTATGAGAAGGAGGA+AGG + chr1_2:69932848-69932867 None:intergenic 40.0%
GTTGTTATGGTAGGTACTAC+CGG + chr1_2:69932947-69932966 None:intergenic 40.0%
TACAAATTACGGCCAAAACG+AGG - chr1_2:69933026-69933045 Msa0088800:CDS 40.0%
! GGTTTACTTTGTCCTCGTTT+TGG + chr1_2:69933041-69933060 None:intergenic 40.0%
GAGGACAAAGTAAACCTCAT+TGG - chr1_2:69933045-69933064 Msa0088800:CDS 40.0%
CTCCTCTACATATTCCAATG+AGG + chr1_2:69933062-69933081 None:intergenic 40.0%
AGACATTTGCGACAATCTTC+AGG + chr1_2:69933093-69933112 None:intergenic 40.0%
TGGACATGCTTGTGTTAGAT+AGG + chr1_2:69933130-69933149 None:intergenic 40.0%
GGCAGATCAATTCAATAGTG+TGG - chr1_2:69933281-69933300 Msa0088800:CDS 40.0%
! ACAGTGTACACCTGATTTGT+CGG - chr1_2:69933419-69933438 Msa0088800:CDS 40.0%
GATAGAGGCGACTACATAAC+CGG - chr1_2:69932925-69932944 Msa0088800:CDS 45.0%
AGAAGCAATTGGATGGTACG+AGG - chr1_2:69933158-69933177 Msa0088800:CDS 45.0%
TATTAGGCCTCAGCGAAATG+TGG - chr1_2:69933220-69933239 Msa0088800:CDS 45.0%
TGTGGCCTGCTATAATTTGG+TGG - chr1_2:69933238-69933257 Msa0088800:CDS 45.0%
TCACATCGTAAGTATGCTGC+AGG - chr1_2:69933351-69933370 Msa0088800:CDS 45.0%
GTTTGATCACTACTAGGACC+TGG + chr1_2:69933384-69933403 None:intergenic 45.0%
CACTGTGAAACCGACAAATC+AGG + chr1_2:69933432-69933451 None:intergenic 45.0%
GATAGAGGCGACTACATAAC+CGG - chr1_2:69932925-69932944 Msa0088800:CDS 45.0%
AGAAGCAATTGGATGGTACG+AGG - chr1_2:69933158-69933177 Msa0088800:CDS 45.0%
TATTAGGCCTCAGCGAAATG+TGG - chr1_2:69933220-69933239 Msa0088800:CDS 45.0%
TGTGGCCTGCTATAATTTGG+TGG - chr1_2:69933238-69933257 Msa0088800:CDS 45.0%
TCACATCGTAAGTATGCTGC+AGG - chr1_2:69933351-69933370 Msa0088800:CDS 45.0%
GTTTGATCACTACTAGGACC+TGG + chr1_2:69933384-69933403 None:intergenic 45.0%
CACTGTGAAACCGACAAATC+AGG + chr1_2:69933432-69933451 None:intergenic 45.0%
CGCTGAGGCCTAATATCGAA+CGG + chr1_2:69933215-69933234 None:intergenic 50.0%
TATGCTGCAGGAACTTTGCC+AGG - chr1_2:69933363-69933382 Msa0088800:CDS 50.0%
CGCTGAGGCCTAATATCGAA+CGG + chr1_2:69933215-69933234 None:intergenic 50.0%
TATGCTGCAGGAACTTTGCC+AGG - chr1_2:69933363-69933382 Msa0088800:CDS 50.0%
TAGCAGGCCACATTTCGCTG+AGG + chr1_2:69933230-69933249 None:intergenic 55.0%
TAGCAGGCCACATTTCGCTG+AGG + chr1_2:69933230-69933249 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 69932817 69933575 69932817 ID=Msa0088800;Name=Msa0088800
chr1_2 mRNA 69932817 69933575 69932817 ID=Msa0088800-mRNA-1;Parent=Msa0088800;Name=Msa0088800-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|252
chr1_2 exon 69932817 69933575 69932817 ID=Msa0088800-mRNA-1:exon:24080;Parent=Msa0088800-mRNA-1
chr1_2 CDS 69932817 69933575 69932817 ID=Msa0088800-mRNA-1:cds;Parent=Msa0088800-mRNA-1
Gene Sequence

>Msa0088800

ATGGCTACTATTTCTGTAAGTCCATATTCCTTCCTCCTTCTCATAATCCTTTTCACATCTAAAGTAAACGCAGATGACAATTTTACCTATTTATGTGACAAAAATAACGATAGAGGCGACTACATAACCGGTAGTACCTACCATAACAACCTCAAAATCGCTTTCATATACCTGACTTTCAACTCAAAAGTTAACTACGGTTTCTACAATACAAATTACGGCCAAAACGAGGACAAAGTAAACCTCATTGGAATATGTAGAGGAGACATTAATCCTGAAGATTGTCGCAAATGTCTCGTTAGTTCAAAATCCTATCTAACACAAGCATGTCCAAACAGAAAAGAAGCAATTGGATGGTACGAGGCTGATCAGAAATGCATGTTGCGTTATTCAGACCGTTCGATATTAGGCCTCAGCGAAATGTGGCCTGCTATAATTTGGTGGAATGTGAACAATGCAACTTTGGCAGATCAATTCAATAGTGTGGTGAAACAATTGTTGGACGATTTAAAAAACAAGGCTAGAAATGGTGACTCACATCGTAAGTATGCTGCAGGAACTTTGCCAGGTCCTAGTAGTGATCAAACAATATATGGTCTTGTACAGTGTACACCTGATTTGTCGGTTTCACAGTGTGATGACTGTTTGAATGAATCTATTGCTGAAGTCCCAAAATATTGTACCAACAAGATTGGTTGTAGAATTTTTAGAGCAAGCTGTTATTTGAGGTTTGAAACTCACCAATTCTATCAAACCTAA

Protein sequence

>Msa0088800

MATISVSPYSFLLLIILFTSKVNADDNFTYLCDKNNDRGDYITGSTYHNNLKIAFIYLTFNSKVNYGFYNTNYGQNEDKVNLIGICRGDINPEDCRKCLVSSKSYLTQACPNRKEAIGWYEADQKCMLRYSDRSILGLSEMWPAIIWWNVNNATLADQFNSVVKQLLDDLKNKARNGDSHRKYAAGTLPGPSSDQTIYGLVQCTPDLSVSQCDDCLNESIAEVPKYCTNKIGCRIFRASCYLRFETHQFYQT*