AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0892820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892820 MtrunA17_Chr6g0475931 87.398 246 20 3 1 240 1 241 8.09e-147 409
Msa0892820 MtrunA17_Chr5g0398561 50.000 166 79 2 59 223 59 221 2.79e-50 164
Msa0892820 MtrunA17_Chr3g0135231 29.365 126 87 1 89 214 86 209 9.32e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892820 AT4G25370.1 50.218 229 103 7 18 240 14 237 1.36e-67 209
Msa0892820 AT4G12060.1 56.213 169 67 4 68 233 76 240 9.04e-53 171

Find 70 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGAGAGAGAGGTTT+TGG 0.191792 6_1:-74134793 None:intergenic
AACGTGACTCATTTACTTCT+TGG 0.193512 6_1:+74139647 Msa0892820:CDS
CTCATTTACTTCTTGGAATT+TGG 0.207345 6_1:+74139654 Msa0892820:CDS
AAAACTCACTTTGAAGGATT+TGG 0.216298 6_1:-74135158 None:intergenic
TGCTGTTTCAGCAATTTCTT+TGG 0.256036 6_1:-74139738 None:intergenic
AGAGCTTCGGTTCCTACTTT+AGG 0.268153 6_1:-74137081 None:intergenic
CTCTCTCTAACTTCTCTCTT+TGG 0.296798 6_1:+74134925 Msa0892820:CDS
CGAAAGGTCTTGTCTGCTTT+AGG 0.302687 6_1:+74139698 Msa0892820:CDS
GCAAAATTCTTAAGAGCTAA+TGG 0.310722 6_1:+74138386 Msa0892820:CDS
ACCTCTCTCTCTTTCTTCAA+TGG 0.348304 6_1:+74134798 Msa0892820:exon
GGCATATGCAATGGCGGAGT+TGG 0.395307 6_1:+74137038 Msa0892820:CDS
AGTGTGTTGGTGTTGGTGTT+GGG 0.402794 6_1:-74134862 None:intergenic
AAGAAGAGAGTGTGAAGAAA+AGG 0.405397 6_1:-74134833 None:intergenic
TTAGAGAGAGAGTACATGAT+TGG 0.409045 6_1:-74134912 None:intergenic
CGGAAATTTGTGATGGAAAT+GGG 0.415514 6_1:-74134970 None:intergenic
AACAAGTCTCTTTCAACTAC+TGG 0.415856 6_1:+74134715 None:intergenic
GAGTGTGTTGGTGTTGGTGT+TGG 0.422140 6_1:-74134863 None:intergenic
AGTACATGATTGGTTGTTGT+TGG 0.445207 6_1:-74134902 None:intergenic
ACGGAAATTTGTGATGGAAA+TGG 0.453465 6_1:-74134971 None:intergenic
AGGCTAGTGGTGATATTGAT+TGG 0.457256 6_1:+74140071 Msa0892820:intron
GTGGTCGGCGAGGGCTATAA+AGG 0.469492 6_1:+74137017 Msa0892820:CDS
TGGTTTAAGGTGGTCGGCGA+GGG 0.471117 6_1:+74137008 Msa0892820:intron
TTTGTTTGGTTTAAGGTGGT+CGG 0.473407 6_1:+74137002 Msa0892820:intron
AGAGAGTGTGAAGAAAAGGT+TGG 0.483166 6_1:-74134829 None:intergenic
GTGTGAAGAAAAGGTTGGAA+TGG 0.488637 6_1:-74134824 None:intergenic
GAACAAACATTAGAGATACT+TGG 0.494086 6_1:+74138431 Msa0892820:CDS
CACTTCATAAAGCCCTCGAT+TGG 0.501232 6_1:+74138504 Msa0892820:CDS
TTCTTGGTTTCACCAGATTG+TGG 0.510521 6_1:-74135131 None:intergenic
AATCCCCATGAGAAGAGCTT+CGG 0.510732 6_1:-74137094 None:intergenic
TTTCCGTGCCACTTCAGAAA+CGG 0.513699 6_1:+74134987 Msa0892820:CDS
CAAACAACTTACGGGTCAGT+AGG 0.514536 6_1:-74135024 None:intergenic
GGAACCGAAGCTCTTCTCAT+GGG 0.514916 6_1:+74137090 Msa0892820:CDS
GGGTCAGTAGGGAGATTAAA+CGG 0.515224 6_1:-74135012 None:intergenic
TGAAGTGGTTCAGTCAAAGA+AGG 0.516251 6_1:-74138488 None:intergenic
AAACTTAAGTATCCTAAAGT+AGG 0.518801 6_1:+74137069 Msa0892820:CDS
CAAAGAAGGTACCACAGGGC+TGG 0.521979 6_1:-74138474 None:intergenic
AATTTGGTCACAAGAAGAAT+CGG 0.524470 6_1:+74139670 Msa0892820:CDS
CTTAATGAGACATCAAAGTC+AGG 0.528570 6_1:+74138530 Msa0892820:CDS
AAACGGCACCGTTTCTGAAG+TGG 0.536415 6_1:-74134995 None:intergenic
ACTTCATAAAGCCCTCGATT+GGG 0.536661 6_1:+74138505 Msa0892820:CDS
AACAAACATTAGAGATACTT+GGG 0.539478 6_1:+74138432 Msa0892820:CDS
TGATATAAAATGTAGGTGAA+GGG 0.544707 6_1:+74139618 Msa0892820:intron
TTATGTTTCTTGTAGGCTAG+TGG 0.544994 6_1:+74140058 Msa0892820:intron
GAATTTGTAGTGTGCACACT+TGG 0.545774 6_1:-74134743 None:intergenic
CTCATTAAGTGCCCAATCGA+GGG 0.546784 6_1:-74138516 None:intergenic
TCAGTCAAAGAAGGTACCAC+AGG 0.550965 6_1:-74138479 None:intergenic
GATATAAAATGTAGGTGAAG+GGG 0.556811 6_1:+74139619 Msa0892820:intron
AGAAGAATCGGCAGGTCGAA+AGG 0.557152 6_1:+74139682 Msa0892820:CDS
CAATGGCGGAGTTGGAAACA+AGG 0.558511 6_1:+74137046 Msa0892820:CDS
GCCATTGAAGAAAGAGAGAG+AGG 0.558904 6_1:-74134799 None:intergenic
CAATCGAGGGCTTTATGAAG+TGG 0.559203 6_1:-74138503 None:intergenic
TTTGACATGGAAATCTAAAG+AGG 0.570570 6_1:-74140172 None:intergenic
TTGTGATGGAAATGGGTCGT+TGG 0.574801 6_1:-74134963 None:intergenic
AGGAACCGAAGCTCTTCTCA+TGG 0.574875 6_1:+74137089 Msa0892820:CDS
AGAGAAGAGTGTGTTGGTGT+TGG 0.577106 6_1:-74134869 None:intergenic
TTGGTTTAAGGTGGTCGGCG+AGG 0.581133 6_1:+74137007 Msa0892820:intron
GGCTATAAAGGCATATGCAA+TGG 0.582460 6_1:+74137029 Msa0892820:CDS
AAACAACTTACGGGTCAGTA+GGG 0.586351 6_1:-74135023 None:intergenic
TGGTCACAAGAAGAATCGGC+AGG 0.599189 6_1:+74139674 Msa0892820:CDS
AGATACTTGGGAAATCTGAC+TGG 0.600934 6_1:+74138444 Msa0892820:CDS
TCTCATTAAGTGCCCAATCG+AGG 0.607236 6_1:-74138517 None:intergenic
TGAACGAGAGAAGAGTGTGT+TGG 0.616137 6_1:-74134875 None:intergenic
TTGACATGGAAATCTAAAGA+GGG 0.630237 6_1:-74140171 None:intergenic
GAACCGAAGCTCTTCTCATG+GGG 0.645463 6_1:+74137091 Msa0892820:CDS
AGTGGCACGGAAATTTGTGA+TGG 0.654680 6_1:-74134977 None:intergenic
GCACCGTTTCTGAAGTGGCA+CGG 0.660995 6_1:-74134990 None:intergenic
TATAAAGGCATATGCAATGG+CGG 0.665721 6_1:+74137032 Msa0892820:CDS
CAGTCAAAGAAGGTACCACA+GGG 0.673070 6_1:-74138478 None:intergenic
TAGTACAACAGTATTTGACA+TGG 0.683666 6_1:-74140185 None:intergenic
CTGGTACTACTCCAGCCCTG+TGG 0.699262 6_1:+74138463 Msa0892820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr6_1:74136673-74136692 Msa0892820:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTGC+AGG + chr6_1:74135105-74135124 Msa0892820:intron 10.0%
!! TATTCTAATTTATATGTATT+CGG - chr6_1:74135550-74135569 None:intergenic 10.0%
!! TATTAATAAGAGATATATTT+GGG + chr6_1:74135804-74135823 Msa0892820:intron 10.0%
!! ACAATAAATTAATACAATTA+AGG - chr6_1:74136839-74136858 None:intergenic 10.0%
!!! TTATTTTATAAACACTTAAT+AGG + chr6_1:74137443-74137462 Msa0892820:intron 10.0%
!! ACATTATTAAATCTTAAAAT+TGG + chr6_1:74138091-74138110 Msa0892820:intron 10.0%
!! CATTATTAAATCTTAAAATT+GGG + chr6_1:74138092-74138111 Msa0892820:intron 10.0%
!!! TACTATATTTTAAACTTAAT+AGG - chr6_1:74138889-74138908 None:intergenic 10.0%
!! TATTGTAATGTTTAAAAAAT+CGG - chr6_1:74139992-74140011 None:intergenic 10.0%
!! TAGTTCAATATTTATGTAAT+TGG + chr6_1:74135211-74135230 Msa0892820:intron 15.0%
!! AGTTCAATATTTATGTAATT+GGG + chr6_1:74135212-74135231 Msa0892820:intron 15.0%
!! ATTAGAATAATTCATCTAAT+TGG + chr6_1:74135561-74135580 Msa0892820:intron 15.0%
!! CTAAATGTATTTATTCATAA+AGG - chr6_1:74135750-74135769 None:intergenic 15.0%
!! GTATTAATAAGAGATATATT+TGG + chr6_1:74135803-74135822 Msa0892820:intron 15.0%
!! ATTAATAAGAGATATATTTG+GGG + chr6_1:74135805-74135824 Msa0892820:intron 15.0%
!!! GAAAATTAAATTTTTGTGAA+GGG + chr6_1:74135878-74135897 Msa0892820:intron 15.0%
!!! ACAAACAATTTTTTTTGAAA+TGG - chr6_1:74135948-74135967 None:intergenic 15.0%
!!! CTATTTTTTAAACATAAATG+AGG - chr6_1:74136513-74136532 None:intergenic 15.0%
!! ATAAATTAATACAATTAAGG+CGG - chr6_1:74136836-74136855 None:intergenic 15.0%
!!! TATTTGTTTTCATTGAAAAA+TGG + chr6_1:74137519-74137538 Msa0892820:intron 15.0%
!!! GTTATTTTGACAAAAAAAAA+GGG - chr6_1:74138975-74138994 None:intergenic 15.0%
!!! TGTTATTTTGACAAAAAAAA+AGG - chr6_1:74138976-74138995 None:intergenic 15.0%
!! TAACTTAAGTATTACAAAAA+AGG - chr6_1:74139595-74139614 None:intergenic 15.0%
!! GTTATTATGATATAAAATGT+AGG + chr6_1:74139611-74139630 Msa0892820:intron 15.0%
!!! CAATAATACAATGTTTTATT+TGG + chr6_1:74139781-74139800 Msa0892820:intron 15.0%
!!! TCTTTTTTATACAAGTTTTT+TGG + chr6_1:74140236-74140255 Msa0892820:three_prime_UTR 15.0%
!! AAAAAAAATAAGTGTTACAA+GGG - chr6_1:74140319-74140338 None:intergenic 15.0%
!! AAAAAAAAATAAGTGTTACA+AGG - chr6_1:74140320-74140339 None:intergenic 15.0%
!! AATATTTATGTAATTGGGTT+CGG + chr6_1:74135217-74135236 Msa0892820:intron 20.0%
!! TATTATAGTATAGATCTATG+AGG - chr6_1:74135465-74135484 None:intergenic 20.0%
!! TAGATCTATACTATAATACA+TGG + chr6_1:74135467-74135486 Msa0892820:intron 20.0%
!!! ATTTTGTGTTTTTATGTTTG+TGG + chr6_1:74135598-74135617 Msa0892820:intron 20.0%
!! TTCTTATAATAAAGGACTAA+GGG - chr6_1:74135643-74135662 None:intergenic 20.0%
!! GTTAGAAGTTCTTATAATAA+AGG - chr6_1:74135651-74135670 None:intergenic 20.0%
!! TTAATAAGAGATATATTTGG+GGG + chr6_1:74135806-74135825 Msa0892820:intron 20.0%
!! TGTATATAGAAATTTGTAGA+GGG + chr6_1:74135843-74135862 Msa0892820:intron 20.0%
!!! GGAAAATTAAATTTTTGTGA+AGG + chr6_1:74135877-74135896 Msa0892820:intron 20.0%
!!! TGTTGATTTTTAATATTCTC+AGG - chr6_1:74136045-74136064 None:intergenic 20.0%
!! TATGGTATTAAGAAAATTGT+TGG - chr6_1:74136135-74136154 None:intergenic 20.0%
!!! AGTACTAAAATTTGAAATGA+CGG + chr6_1:74136323-74136342 Msa0892820:intron 20.0%
!! TCATTACATTTCTATACTTT+AGG + chr6_1:74136623-74136642 Msa0892820:intron 20.0%
!! CATTACATTTCTATACTTTA+GGG + chr6_1:74136624-74136643 Msa0892820:intron 20.0%
!! ACTCTTCAATAATTCATTTA+AGG + chr6_1:74136733-74136752 Msa0892820:intron 20.0%
!!! CAATTTGTTTTGTTTTTGTT+TGG + chr6_1:74136988-74137007 Msa0892820:intron 20.0%
!!! TTTTGTTTTTGTTTGGTTTA+AGG + chr6_1:74136995-74137014 Msa0892820:intron 20.0%
!! AGTAGCTTATTATATAACTT+CGG + chr6_1:74137591-74137610 Msa0892820:intron 20.0%
!!! CAAAGCACTAAAATATATTT+TGG - chr6_1:74137834-74137853 None:intergenic 20.0%
!! AGAATCAAATATTCAAACTT+GGG - chr6_1:74138204-74138223 None:intergenic 20.0%
!! TAGAATCAAATATTCAAACT+TGG - chr6_1:74138205-74138224 None:intergenic 20.0%
!! AAGTTTGAATATTTGATTCT+AGG + chr6_1:74138204-74138223 Msa0892820:intron 20.0%
!! AAAAAATTTGGCATAATCTT+AGG - chr6_1:74138240-74138259 None:intergenic 20.0%
!!! GGCATGATTTTTAAAAAATT+TGG - chr6_1:74138252-74138271 None:intergenic 20.0%
!! TAATTAAAACATGAACACAA+TGG - chr6_1:74138676-74138695 None:intergenic 20.0%
!!! AGTAATGATGTTTAAAATCA+TGG + chr6_1:74138816-74138835 Msa0892820:intron 20.0%
!! ACATAACGTATCATATATTT+AGG + chr6_1:74138924-74138943 Msa0892820:intron 20.0%
!! AAATGTACTAAATAGACAAT+AGG + chr6_1:74139381-74139400 Msa0892820:intron 20.0%
!! TTAGAGAATAATTGAACAAT+AGG - chr6_1:74139537-74139556 None:intergenic 20.0%
!!! AATGTTTTATTTGGTTTCAT+TGG + chr6_1:74139790-74139809 Msa0892820:intron 20.0%
!! TGCATTATTTATTTATGATC+TGG - chr6_1:74139832-74139851 None:intergenic 20.0%
!! GTTTCTTCAAATTTTCTTCT+GGG + chr6_1:74135047-74135066 Msa0892820:intron 25.0%
! ACAAAAAAAACTCACTTTGA+AGG - chr6_1:74135167-74135186 None:intergenic 25.0%
! ATATTTATGTAATTGGGTTC+GGG + chr6_1:74135218-74135237 Msa0892820:intron 25.0%
!! ATGTGATGATTTTCTATTAG+TGG - chr6_1:74135358-74135377 None:intergenic 25.0%
!!! ATTCATCTAATTGGTTTTTG+TGG + chr6_1:74135570-74135589 Msa0892820:intron 25.0%
! GTTCTTATAATAAAGGACTA+AGG - chr6_1:74135644-74135663 None:intergenic 25.0%
! GTGTATATAGAAATTTGTAG+AGG + chr6_1:74135842-74135861 Msa0892820:intron 25.0%
!!! ATTTTTTTTGAAATGGTCTG+TGG - chr6_1:74135941-74135960 None:intergenic 25.0%
!! TTGTAGAGCACTTATATATA+GGG - chr6_1:74135971-74135990 None:intergenic 25.0%
!! TTTGTAGAGCACTTATATAT+AGG - chr6_1:74135972-74135991 None:intergenic 25.0%
! TAAATGAGGACTAATAGTTT+AGG - chr6_1:74136499-74136518 None:intergenic 25.0%
!! CTATACTTTAGGGATTAAAT+AGG + chr6_1:74136634-74136653 Msa0892820:intron 25.0%
! AGGATAGATAATGAAAGTTT+AGG + chr6_1:74136693-74136712 Msa0892820:intron 25.0%
!! AAGTTTAGGAGAAAAGTTTT+AGG + chr6_1:74136707-74136726 Msa0892820:intron 25.0%
!! ATAATACTAGTTTGTACGAA+AGG + chr6_1:74136756-74136775 Msa0892820:intron 25.0%
!!! ATTGCTATTTAGTACTAGTA+CGG - chr6_1:74136922-74136941 None:intergenic 25.0%
! AAACTTAAGTATCCTAAAGT+AGG + chr6_1:74137069-74137088 Msa0892820:CDS 25.0%
!! TGTGTAAAGAGATTTTATAC+TGG + chr6_1:74137355-74137374 Msa0892820:intron 25.0%
! TTAAACCATTATGCAATAAG+TGG + chr6_1:74137397-74137416 Msa0892820:intron 25.0%
! ACTTAATAGGTATAAGCATT+TGG + chr6_1:74137456-74137475 Msa0892820:intron 25.0%
! CTTAATAGGTATAAGCATTT+GGG + chr6_1:74137457-74137476 Msa0892820:intron 25.0%
! TAAGCTACTCAAATAACTAA+TGG - chr6_1:74137580-74137599 None:intergenic 25.0%
! TATAACTTCGGAATAGATTA+TGG + chr6_1:74137603-74137622 Msa0892820:intron 25.0%
! ATAACTTCGGAATAGATTAT+GGG + chr6_1:74137604-74137623 Msa0892820:intron 25.0%
! ATCAAAATAACACAACCAAA+AGG - chr6_1:74137752-74137771 None:intergenic 25.0%
! ATTATAATAGATAGTGAGCT+AGG + chr6_1:74138174-74138193 Msa0892820:intron 25.0%
!! TAATTTTTACTGTCCTTTTC+AGG + chr6_1:74138350-74138369 Msa0892820:intron 25.0%
! AACAAACATTAGAGATACTT+GGG + chr6_1:74138432-74138451 Msa0892820:CDS 25.0%
!!! CATCAAACATGATTTTTTTC+AGG - chr6_1:74138796-74138815 None:intergenic 25.0%
! AAAAAAAAGGGACAACAATT+TGG - chr6_1:74138963-74138982 None:intergenic 25.0%
!! AAAGTTTAAAGTACTAAAGC+TGG - chr6_1:74139211-74139230 None:intergenic 25.0%
! ATGATATAAAATGTAGGTGA+AGG + chr6_1:74139617-74139636 Msa0892820:intron 25.0%
! TGATATAAAATGTAGGTGAA+GGG + chr6_1:74139618-74139637 Msa0892820:intron 25.0%
! ACCTCAATGACTATAAAATA+TGG + chr6_1:74140034-74140053 Msa0892820:intron 25.0%
!! ACCATATTTTATAGTCATTG+AGG - chr6_1:74140038-74140057 None:intergenic 25.0%
! ATATGGTTTATGTTTCTTGT+AGG + chr6_1:74140051-74140070 Msa0892820:intron 25.0%
TGAAGAAACCAAACAACTTA+CGG - chr6_1:74135036-74135055 None:intergenic 30.0%
! GGTTTCTTCAAATTTTCTTC+TGG + chr6_1:74135046-74135065 Msa0892820:intron 30.0%
! AAAACTCACTTTGAAGGATT+TGG - chr6_1:74135161-74135180 None:intergenic 30.0%
! TGATTTTCTATTAGTGGTGT+CGG - chr6_1:74135352-74135371 None:intergenic 30.0%
TTCAGTGTAATTATACGTGT+CGG + chr6_1:74135380-74135399 Msa0892820:intron 30.0%
AGAACTTCTAACGAAAATCA+CGG + chr6_1:74135659-74135678 Msa0892820:intron 30.0%
GGGTATTAAGAAAATGTTGT+TGG + chr6_1:74135680-74135699 Msa0892820:intron 30.0%
! TTGTAGAGGGTCTTATATTT+AGG + chr6_1:74135856-74135875 Msa0892820:intron 30.0%
TTTAATATTCTCAGGCAAGT+CGG - chr6_1:74136037-74136056 None:intergenic 30.0%
TTGAATGCATTTATTCGCAT+AGG + chr6_1:74136065-74136084 Msa0892820:intron 30.0%
TGAATGCATTTATTCGCATA+GGG + chr6_1:74136066-74136085 Msa0892820:intron 30.0%
AGGAACGTCTAACAAAAATA+TGG - chr6_1:74136153-74136172 None:intergenic 30.0%
TAGTTCATAGTGTTGTCAAA+TGG + chr6_1:74136272-74136291 Msa0892820:intron 30.0%
TTATGCGTGAAACTTCAATT+TGG + chr6_1:74136422-74136441 Msa0892820:intron 30.0%
AGATAGATAGATAGAGTTTG+TGG + chr6_1:74136564-74136583 Msa0892820:intron 30.0%
GGATTAAATAGGATAGATAC+TGG + chr6_1:74136645-74136664 Msa0892820:intron 30.0%
!! TTGCTATTTAGTACTAGTAC+GGG - chr6_1:74136921-74136940 None:intergenic 30.0%
AGCAATACTCTTCATGTAAT+TGG + chr6_1:74136936-74136955 Msa0892820:intron 30.0%
GCAATACTCTTCATGTAATT+GGG + chr6_1:74136937-74136956 Msa0892820:intron 30.0%
!! TGTTTTTGTTTGGTTTAAGG+TGG + chr6_1:74136998-74137017 Msa0892820:intron 30.0%
! AATGCATTTCTCTTTTCTCA+TGG + chr6_1:74137187-74137206 Msa0892820:intron 30.0%
! TTTCTCTTTTCTCATGGAAT+AGG + chr6_1:74137193-74137212 Msa0892820:intron 30.0%
TTGTTCAAGTATGACATGAT+TGG - chr6_1:74137316-74137335 None:intergenic 30.0%
! TAAAGAGATTTTATACTGGC+AGG + chr6_1:74137359-74137378 Msa0892820:intron 30.0%
! AAAGAGATTTTATACTGGCA+GGG + chr6_1:74137360-74137379 Msa0892820:intron 30.0%
GATAACCACTTATTGCATAA+TGG - chr6_1:74137405-74137424 None:intergenic 30.0%
TATAAGCATTTGGGTACATA+TGG + chr6_1:74137466-74137485 Msa0892820:intron 30.0%
CTTATAATAAATGATGCCAG+TGG - chr6_1:74137784-74137803 None:intergenic 30.0%
TTATAAGTTCGTTTCGAATC+CGG + chr6_1:74137797-74137816 Msa0892820:intron 30.0%
TTGTATGTAAGAACCAAGAA+TGG + chr6_1:74137857-74137876 Msa0892820:intron 30.0%
AATCTTTCTACATCCATTCT+TGG - chr6_1:74137873-74137892 None:intergenic 30.0%
! CAGTTTCTAGAAAAAATCAC+AGG - chr6_1:74137899-74137918 None:intergenic 30.0%
! GTTCATTTGCTCTGAATTAT+TGG + chr6_1:74137960-74137979 Msa0892820:intron 30.0%
! TTTTGTTCATTCCTTCCATA+TGG + chr6_1:74137993-74138012 Msa0892820:intron 30.0%
TTTGTTCATTCCTTCCATAT+GGG + chr6_1:74137994-74138013 Msa0892820:intron 30.0%
!! AGTTTTGACAAAACTGTATC+TGG + chr6_1:74138031-74138050 Msa0892820:intron 30.0%
!! GTTTTGACAAAACTGTATCT+GGG + chr6_1:74138032-74138051 Msa0892820:intron 30.0%
AATGTTGAACAACGTATACA+AGG - chr6_1:74138326-74138345 None:intergenic 30.0%
GCAAAATTCTTAAGAGCTAA+TGG + chr6_1:74138386-74138405 Msa0892820:CDS 30.0%
GAACAAACATTAGAGATACT+TGG + chr6_1:74138431-74138450 Msa0892820:CDS 30.0%
ATGAATCTAGCAGATCAATT+GGG - chr6_1:74138614-74138633 None:intergenic 30.0%
AATGAATCTAGCAGATCAAT+TGG - chr6_1:74138615-74138634 None:intergenic 30.0%
CACAAATTTCAACAACAGTT+TGG + chr6_1:74138717-74138736 Msa0892820:intron 30.0%
TGTGTTCAATGGATAACTAA+TGG + chr6_1:74138844-74138863 Msa0892820:intron 30.0%
GATACGTTATGTTAAGTAGA+TGG - chr6_1:74138916-74138935 None:intergenic 30.0%
! TAATCTACTGGCTACTTTAA+AGG + chr6_1:74139006-74139025 Msa0892820:intron 30.0%
TCATTGGAAATGTATATCTC+AGG + chr6_1:74139316-74139335 Msa0892820:intron 30.0%
TGTACTAAATAGACAATAGG+AGG + chr6_1:74139384-74139403 Msa0892820:intron 30.0%
! CAAAACCAATGTGATTTTGA+GGG - chr6_1:74139494-74139513 None:intergenic 30.0%
GATATAAAATGTAGGTGAAG+GGG + chr6_1:74139619-74139638 Msa0892820:intron 30.0%
CTCATTTACTTCTTGGAATT+TGG + chr6_1:74139654-74139673 Msa0892820:CDS 30.0%
AATTTGGTCACAAGAAGAAT+CGG + chr6_1:74139670-74139689 Msa0892820:CDS 30.0%
! GTATAGTCAATTTTCTCTAG+AGG - chr6_1:74140148-74140167 None:intergenic 30.0%
TTGACATGGAAATCTAAAGA+GGG - chr6_1:74140174-74140193 None:intergenic 30.0%
TTTGACATGGAAATCTAAAG+AGG - chr6_1:74140175-74140194 None:intergenic 30.0%
TAGTACAACAGTATTTGACA+TGG - chr6_1:74140188-74140207 None:intergenic 30.0%
! AAGAAAGAGAGAGAGGTTTT+GGG - chr6_1:74134795-74134814 None:intergenic 35.0%
! AAGAAGAGAGTGTGAAGAAA+AGG - chr6_1:74134836-74134855 None:intergenic 35.0%
! AGTACATGATTGGTTGTTGT+TGG - chr6_1:74134905-74134924 None:intergenic 35.0%
! TTAGAGAGAGAGTACATGAT+TGG - chr6_1:74134915-74134934 None:intergenic 35.0%
! CGGAAATTTGTGATGGAAAT+GGG - chr6_1:74134973-74134992 None:intergenic 35.0%
! ACGGAAATTTGTGATGGAAA+TGG - chr6_1:74134974-74134993 None:intergenic 35.0%
GAAGAAACCAAACAACTTAC+GGG - chr6_1:74135035-74135054 None:intergenic 35.0%
! CTTCAAATTTTCTTCTGGGT+CGG + chr6_1:74135051-74135070 Msa0892820:intron 35.0%
!! TGAAGGATTTGGAGTTTTCT+TGG - chr6_1:74135150-74135169 None:intergenic 35.0%
TAGTCTATACCTATGAAGCA+CGG + chr6_1:74135309-74135328 Msa0892820:intron 35.0%
TAGTATAGATCTATGAGGCA+TGG - chr6_1:74135460-74135479 None:intergenic 35.0%
ACTAATCCGGTTAACTTAGT+GGG - chr6_1:74135516-74135535 None:intergenic 35.0%
AACTAATCCGGTTAACTTAG+TGG - chr6_1:74135517-74135536 None:intergenic 35.0%
!! ACTAAGTTAACCGGATTAGT+TGG + chr6_1:74135516-74135535 Msa0892820:intron 35.0%
GAACTTCTAACGAAAATCAC+GGG + chr6_1:74135660-74135679 Msa0892820:intron 35.0%
TGTGAAGGGTCTACAAATTT+AGG + chr6_1:74135892-74135911 Msa0892820:intron 35.0%
GTGAAGGGTCTACAAATTTA+GGG + chr6_1:74135893-74135912 Msa0892820:intron 35.0%
TCTACAAATTTAGGGATGGA+GGG + chr6_1:74135901-74135920 Msa0892820:intron 35.0%
CAAGTCGGTAATACTAATCA+GGG - chr6_1:74136022-74136041 None:intergenic 35.0%
! TCTGAAATGTGAGTGTCTAT+TGG - chr6_1:74136099-74136118 None:intergenic 35.0%
TGTTAGACGTTCCTGTAATA+AGG + chr6_1:74136159-74136178 Msa0892820:intron 35.0%
GTTAGACGTTCCTGTAATAA+GGG + chr6_1:74136160-74136179 Msa0892820:intron 35.0%
TTCCTGTAATAAGGGATGAA+GGG + chr6_1:74136168-74136187 Msa0892820:intron 35.0%
TTCATAGTGTTGTCAAATGG+TGG + chr6_1:74136275-74136294 Msa0892820:intron 35.0%
!! TTGAAATGACGGCTATTTTC+TGG + chr6_1:74136334-74136353 Msa0892820:intron 35.0%
TGGTCCATACTATTTGTACT+TGG + chr6_1:74136442-74136461 Msa0892820:intron 35.0%
GAGACCAAGTACAAATAGTA+TGG - chr6_1:74136449-74136468 None:intergenic 35.0%
AATACAATTAAGGCGGTTAG+CGG - chr6_1:74136829-74136848 None:intergenic 35.0%
! TTTGTTTGGTTTAAGGTGGT+CGG + chr6_1:74137002-74137021 Msa0892820:intron 35.0%
! TATAAAGGCATATGCAATGG+CGG + chr6_1:74137032-74137051 Msa0892820:CDS 35.0%
!!! CTCATGGGGATTTTAATTGA+AGG + chr6_1:74137105-74137124 Msa0892820:CDS 35.0%
! AACTTTTCCAAGATAGTGCT+TGG + chr6_1:74137230-74137249 Msa0892820:intron 35.0%
! AAGGTGCTTAATCGCATTTA+GGG - chr6_1:74137733-74137752 None:intergenic 35.0%
!! AAAGGTGCTTAATCGCATTT+AGG - chr6_1:74137734-74137753 None:intergenic 35.0%
! AAATGCGATTAAGCACCTTT+TGG + chr6_1:74137734-74137753 Msa0892820:intron 35.0%
TAATAAATGATGCCAGTGGA+TGG - chr6_1:74137780-74137799 None:intergenic 35.0%
ATTGCCAAGTAAATCCTGTA+GGG - chr6_1:74137931-74137950 None:intergenic 35.0%
TATTGCCAAGTAAATCCTGT+AGG - chr6_1:74137932-74137951 None:intergenic 35.0%
CAGGATTTACTTGGCAATAT+TGG + chr6_1:74137933-74137952 Msa0892820:intron 35.0%
! CATTTGCTCTGAATTATTGG+TGG + chr6_1:74137963-74137982 Msa0892820:intron 35.0%
GTCAAAACTCAAGAATGTCT+TGG - chr6_1:74138020-74138039 None:intergenic 35.0%
! TGTCTCTAAGAAATGAGTTG+TGG + chr6_1:74138143-74138162 Msa0892820:intron 35.0%
! GTCTCTAAGAAATGAGTTGT+GGG + chr6_1:74138144-74138163 Msa0892820:intron 35.0%
CCAAGATCCTTCCATTTATT+CGG + chr6_1:74138270-74138289 Msa0892820:intron 35.0%
ACAACTTCCTTCCGAATAAA+TGG - chr6_1:74138284-74138303 None:intergenic 35.0%
!!! AAGGAAGTTGTGTTGTTTTC+AGG + chr6_1:74138293-74138312 Msa0892820:intron 35.0%
!!! AAGTTGTGTTGTTTTCAGGT+TGG + chr6_1:74138297-74138316 Msa0892820:intron 35.0%
!!! AGTTGTGTTGTTTTCAGGTT+GGG + chr6_1:74138298-74138317 Msa0892820:intron 35.0%
AGCTTTACTTGTTCCTGAAA+AGG - chr6_1:74138366-74138385 None:intergenic 35.0%
CTTAATGAGACATCAAAGTC+AGG + chr6_1:74138530-74138549 Msa0892820:CDS 35.0%
AAGTCAGGTATGGATGATTT+AGG + chr6_1:74138545-74138564 Msa0892820:intron 35.0%
TGCTAGATTCATTGTTCTGT+TGG + chr6_1:74138622-74138641 Msa0892820:intron 35.0%
TAGATTCATTGTTCTGTTGG+TGG + chr6_1:74138625-74138644 Msa0892820:intron 35.0%
TCATGGTTAAGTGTGTTCAA+TGG + chr6_1:74138833-74138852 Msa0892820:intron 35.0%
CACAACGCTAATTAATCTAC+TGG + chr6_1:74138994-74139013 Msa0892820:intron 35.0%
! CAAGCATTTTCTAACAGATC+AGG - chr6_1:74139091-74139110 None:intergenic 35.0%
CTCAATAAGGACTGAAAATC+AGG + chr6_1:74139159-74139178 Msa0892820:intron 35.0%
ACTCAAGTAGACTATCAACA+TGG - chr6_1:74139244-74139263 None:intergenic 35.0%
TGTGTGTGTGTATGTTTCAT+TGG + chr6_1:74139300-74139319 Msa0892820:intron 35.0%
TGTATATCTCAGGAGATAGT+AGG + chr6_1:74139326-74139345 Msa0892820:intron 35.0%
! CCAAAACCAATGTGATTTTG+AGG - chr6_1:74139495-74139514 None:intergenic 35.0%
!!! CCTCAAAATCACATTGGTTT+TGG + chr6_1:74139492-74139511 Msa0892820:intron 35.0%
AACGTGACTCATTTACTTCT+TGG + chr6_1:74139647-74139666 Msa0892820:CDS 35.0%
!! TGCTGTTTCAGCAATTTCTT+TGG - chr6_1:74139741-74139760 None:intergenic 35.0%
GATAACCGGAATCAAACTAA+CGG + chr6_1:74139919-74139938 Msa0892820:intron 35.0%
TTATGTTTCTTGTAGGCTAG+TGG + chr6_1:74140058-74140077 Msa0892820:intron 35.0%
! AAGCAAGCGTAAGAATTTTC+TGG + chr6_1:74140103-74140122 Msa0892820:exon 35.0%
! AGCAAGCGTAAGAATTTTCT+GGG + chr6_1:74140104-74140123 Msa0892820:exon 35.0%
TGTTACAAGGGAAAAACAGA+AGG - chr6_1:74140307-74140326 None:intergenic 35.0%
GAATTTGTAGTGTGCACACT+TGG - chr6_1:74134746-74134765 None:intergenic 40.0%
! AGAAAGAGAGAGAGGTTTTG+GGG - chr6_1:74134794-74134813 None:intergenic 40.0%
! GAAGAAAGAGAGAGAGGTTT+TGG - chr6_1:74134796-74134815 None:intergenic 40.0%
ACCTCTCTCTCTTTCTTCAA+TGG + chr6_1:74134798-74134817 Msa0892820:exon 40.0%
GTGTGAAGAAAAGGTTGGAA+TGG - chr6_1:74134827-74134846 None:intergenic 40.0%
! AGAGAGTGTGAAGAAAAGGT+TGG - chr6_1:74134832-74134851 None:intergenic 40.0%
CTCTCTCTAACTTCTCTCTT+TGG + chr6_1:74134925-74134944 Msa0892820:CDS 40.0%
AAACAACTTACGGGTCAGTA+GGG - chr6_1:74135026-74135045 None:intergenic 40.0%
! TTTTGCAGGAATCCACAATC+TGG + chr6_1:74135119-74135138 Msa0892820:intron 40.0%
TTCTTGGTTTCACCAGATTG+TGG - chr6_1:74135134-74135153 None:intergenic 40.0%
CTAATCCGGTTAACTTAGTG+GGG - chr6_1:74135515-74135534 None:intergenic 40.0%
AGGGTCTACAAATTTAGGGA+TGG + chr6_1:74135897-74135916 Msa0892820:intron 40.0%
GTCTACAAATTTAGGGATGG+AGG + chr6_1:74135900-74135919 Msa0892820:intron 40.0%
CTACAAATTTAGGGATGGAG+GGG + chr6_1:74135902-74135921 Msa0892820:intron 40.0%
TACAAATTTAGGGATGGAGG+GGG + chr6_1:74135903-74135922 Msa0892820:intron 40.0%
TTGAAATGGTCTGTGGACAA+CGG - chr6_1:74135934-74135953 None:intergenic 40.0%
GCAAGTCGGTAATACTAATC+AGG - chr6_1:74136023-74136042 None:intergenic 40.0%
GTTCCTGTAATAAGGGATGA+AGG + chr6_1:74136167-74136186 Msa0892820:intron 40.0%
ACTGTTATAGCCGAGCTATA+CGG + chr6_1:74136195-74136214 Msa0892820:intron 40.0%
!! TTGTCAAATGGTGGCTTTAG+CGG + chr6_1:74136284-74136303 Msa0892820:intron 40.0%
! AGTGTTATTCTTCGCTTTCG+TGG - chr6_1:74136788-74136807 None:intergenic 40.0%
! GGCTATAAAGGCATATGCAA+TGG + chr6_1:74137029-74137048 Msa0892820:CDS 40.0%
!! CAAAAGCGCTCGTGTAATAT+TGG - chr6_1:74137667-74137686 None:intergenic 40.0%
AGGTGCTTAATCGCATTTAG+GGG - chr6_1:74137732-74137751 None:intergenic 40.0%
! TTTTGATATGCACCATCCAC+TGG + chr6_1:74137765-74137784 Msa0892820:intron 40.0%
!!! TATTTTGGCTTGCATACGTC+CGG - chr6_1:74137819-74137838 None:intergenic 40.0%
! AACTGTTTAGTTTCCCCTAC+AGG + chr6_1:74137914-74137933 Msa0892820:intron 40.0%
TTTCCCCTACAGGATTTACT+TGG + chr6_1:74137924-74137943 Msa0892820:intron 40.0%
TTGCCAAGTAAATCCTGTAG+GGG - chr6_1:74137930-74137949 None:intergenic 40.0%
TTAAAATTGGGTGCGTAGAC+CGG + chr6_1:74138104-74138123 Msa0892820:intron 40.0%
CCGAATAAATGGAAGGATCT+TGG - chr6_1:74138273-74138292 None:intergenic 40.0%
GATCCTTCCATTTATTCGGA+AGG + chr6_1:74138274-74138293 Msa0892820:intron 40.0%
CTTCCTTCCGAATAAATGGA+AGG - chr6_1:74138280-74138299 None:intergenic 40.0%
AGATACTTGGGAAATCTGAC+TGG + chr6_1:74138444-74138463 Msa0892820:CDS 40.0%
TGAAGTGGTTCAGTCAAAGA+AGG - chr6_1:74138491-74138510 None:intergenic 40.0%
ACTTCATAAAGCCCTCGATT+GGG + chr6_1:74138505-74138524 Msa0892820:CDS 40.0%
TGAGACATCAAAGTCAGGTA+TGG + chr6_1:74138535-74138554 Msa0892820:intron 40.0%
AGATCAATTGGGAAAATGCC+AGG - chr6_1:74138603-74138622 None:intergenic 40.0%
!! TTCATTGTTCTGTTGGTGGT+AGG + chr6_1:74138629-74138648 Msa0892820:intron 40.0%
!! TCATTGTTCTGTTGGTGGTA+GGG + chr6_1:74138630-74138649 Msa0892820:intron 40.0%
AACAACAGTTTGGATGATGC+AGG + chr6_1:74138727-74138746 Msa0892820:intron 40.0%
! ACTAATGGCTTGCGAAACTT+TGG + chr6_1:74138859-74138878 Msa0892820:intron 40.0%
! TTTTTCCCTGCTGCTCAATA+AGG + chr6_1:74139146-74139165 Msa0892820:intron 40.0%
TCTAGTGAGCTAGTTGAATG+TGG + chr6_1:74139420-74139439 Msa0892820:intron 40.0%
CTAGTGAGCTAGTTGAATGT+GGG + chr6_1:74139421-74139440 Msa0892820:intron 40.0%
TTCCTCCCTCAAAATCACAT+TGG + chr6_1:74139486-74139505 Msa0892820:intron 40.0%
!! AACCAATGTGATTTTGAGGG+AGG - chr6_1:74139491-74139510 None:intergenic 40.0%
TCATGAAGTCCGGTTGAATT+TGG - chr6_1:74139901-74139920 None:intergenic 40.0%
ATTCCGGTTATCATGAAGTC+CGG - chr6_1:74139911-74139930 None:intergenic 40.0%
! ATAGTCATTGAGGTGTCAGT+CGG - chr6_1:74140028-74140047 None:intergenic 40.0%
AGGCTAGTGGTGATATTGAT+TGG + chr6_1:74140071-74140090 Msa0892820:intron 40.0%
! GCAAGCGTAAGAATTTTCTG+GGG + chr6_1:74140105-74140124 Msa0892820:exon 40.0%
! TTTTCGCAGTAGTGTGATTG+TGG + chr6_1:74140263-74140282 Msa0892820:three_prime_UTR 40.0%
!!! AAAGAGAGAGAGGTTTTGGG+GGG - chr6_1:74134792-74134811 None:intergenic 45.0%
!! GAAAGAGAGAGAGGTTTTGG+GGG - chr6_1:74134793-74134812 None:intergenic 45.0%
GCCATTGAAGAAAGAGAGAG+AGG - chr6_1:74134802-74134821 None:intergenic 45.0%
!! AGTGTGTTGGTGTTGGTGTT+GGG - chr6_1:74134865-74134884 None:intergenic 45.0%
! AGAGAAGAGTGTGTTGGTGT+TGG - chr6_1:74134872-74134891 None:intergenic 45.0%
! TGAACGAGAGAAGAGTGTGT+TGG - chr6_1:74134878-74134897 None:intergenic 45.0%
! TTGTGATGGAAATGGGTCGT+TGG - chr6_1:74134966-74134985 None:intergenic 45.0%
AGTGGCACGGAAATTTGTGA+TGG - chr6_1:74134980-74134999 None:intergenic 45.0%
!! TTTCCGTGCCACTTCAGAAA+CGG + chr6_1:74134987-74135006 Msa0892820:CDS 45.0%
GGGTCAGTAGGGAGATTAAA+CGG - chr6_1:74135015-74135034 None:intergenic 45.0%
CAAACAACTTACGGGTCAGT+AGG - chr6_1:74135027-74135046 None:intergenic 45.0%
CTACTGACCCGTAAGTTGTT+TGG + chr6_1:74135025-74135044 Msa0892820:intron 45.0%
ATACCTATGAAGCACGGACA+CGG + chr6_1:74135315-74135334 Msa0892820:intron 45.0%
!! TATACGTGTCGGTGTCATCT+TGG + chr6_1:74135391-74135410 Msa0892820:intron 45.0%
GCATGGACACTCTTTGGATT+AGG - chr6_1:74135443-74135462 None:intergenic 45.0%
TATGAGGCATGGACACTCTT+TGG - chr6_1:74135449-74135468 None:intergenic 45.0%
TAGTGGGGCTCAATTGAAGT+CGG - chr6_1:74135500-74135519 None:intergenic 45.0%
TTGAGCCCCACTAAGTTAAC+CGG + chr6_1:74135507-74135526 Msa0892820:intron 45.0%
GGCTCAAGTACCAACTAATC+CGG - chr6_1:74135529-74135548 None:intergenic 45.0%
TGAAATGGTCTGTGGACAAC+GGG - chr6_1:74135933-74135952 None:intergenic 45.0%
CTCCCTTCATCCCTTATTAC+AGG - chr6_1:74136173-74136192 None:intergenic 45.0%
AAACCTGTAGCCGTATAGCT+CGG - chr6_1:74136208-74136227 None:intergenic 45.0%
AGAGCTTCGGTTCCTACTTT+AGG - chr6_1:74137084-74137103 None:intergenic 45.0%
AATCCCCATGAGAAGAGCTT+CGG - chr6_1:74137097-74137116 None:intergenic 45.0%
TCTTGAGCCAAGCACTATCT+TGG - chr6_1:74137240-74137259 None:intergenic 45.0%
! AATCGCATTTAGGGGGCATA+TGG - chr6_1:74137724-74137743 None:intergenic 45.0%
GGTGCTTAATCGCATTTAGG+GGG - chr6_1:74137731-74137750 None:intergenic 45.0%
AATGTCTTGGCCCATATGGA+AGG - chr6_1:74138007-74138026 None:intergenic 45.0%
CAAGAATGTCTTGGCCCATA+TGG - chr6_1:74138011-74138030 None:intergenic 45.0%
!! ACAGCAGTGTTGACACTTTC+CGG - chr6_1:74138126-74138145 None:intergenic 45.0%
!! CAGTCAAAGAAGGTACCACA+GGG - chr6_1:74138481-74138500 None:intergenic 45.0%
!! TCAGTCAAAGAAGGTACCAC+AGG - chr6_1:74138482-74138501 None:intergenic 45.0%
! CAATCGAGGGCTTTATGAAG+TGG - chr6_1:74138506-74138525 None:intergenic 45.0%
CACTTCATAAAGCCCTCGAT+TGG + chr6_1:74138504-74138523 Msa0892820:CDS 45.0%
CTCATTAAGTGCCCAATCGA+GGG - chr6_1:74138519-74138538 None:intergenic 45.0%
TCTCATTAAGTGCCCAATCG+AGG - chr6_1:74138520-74138539 None:intergenic 45.0%
TGTATTGAGAAGTAGCCTCC+TGG + chr6_1:74138582-74138601 Msa0892820:intron 45.0%
TCAATTGGGAAAATGCCAGG+AGG - chr6_1:74138600-74138619 None:intergenic 45.0%
TCAGTCCTTATTGAGCAGCA+GGG - chr6_1:74139154-74139173 None:intergenic 45.0%
TTCAGTCCTTATTGAGCAGC+AGG - chr6_1:74139155-74139174 None:intergenic 45.0%
CAGAGACAGTAGACAAACTG+AGG - chr6_1:74139278-74139297 None:intergenic 45.0%
GTTGAATGTGGGAGACTTTC+AGG + chr6_1:74139432-74139451 Msa0892820:intron 45.0%
CAGGACACTCAAGATCACAT+TGG + chr6_1:74139451-74139470 Msa0892820:intron 45.0%
GAAAATGTTCGAACCTACCG+TGG + chr6_1:74139858-74139877 Msa0892820:intron 45.0%
!! CGGTTGAATTTGGCTTGAAC+CGG - chr6_1:74139891-74139910 None:intergenic 45.0%
CGGTTCAAGCCAAATTCAAC+CGG + chr6_1:74139889-74139908 Msa0892820:intron 45.0%
CAACCGGACTTCATGATAAC+CGG + chr6_1:74139905-74139924 Msa0892820:intron 45.0%
! GTTCGCCGTTAGTTTGATTC+CGG - chr6_1:74139927-74139946 None:intergenic 45.0%
TGTCCTATTCCCGGTTCTAT+CGG + chr6_1:74139947-74139966 Msa0892820:intron 45.0%
CTAGTTCAACCGATAGAACC+GGG - chr6_1:74139959-74139978 None:intergenic 45.0%
GCTAGTTCAACCGATAGAAC+CGG - chr6_1:74139960-74139979 None:intergenic 45.0%
! GTTCTATCGGTTGAACTAGC+TGG + chr6_1:74139960-74139979 Msa0892820:intron 45.0%
!! GAGTGTGTTGGTGTTGGTGT+TGG - chr6_1:74134866-74134885 None:intergenic 50.0%
! AAACGGCACCGTTTCTGAAG+TGG - chr6_1:74134998-74135017 None:intergenic 50.0%
! CTTGAGAGGAGCACACTCAT+AGG - chr6_1:74135245-74135264 None:intergenic 50.0%
CTATGAGTGTGCTCCTCTCA+AGG + chr6_1:74135243-74135262 Msa0892820:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG - chr6_1:74135259-74135278 None:intergenic 50.0%
GATTAGGCGTGTTACGCTGT+CGG - chr6_1:74135427-74135446 None:intergenic 50.0%
AGGCGGTTAGCGGAAATCAT+GGG - chr6_1:74136819-74136838 None:intergenic 50.0%
AAGGCGGTTAGCGGAAATCA+TGG - chr6_1:74136820-74136839 None:intergenic 50.0%
GCACTGTATCGTGTCTTTCG+TGG + chr6_1:74136887-74136906 Msa0892820:intron 50.0%
! CAATGGCGGAGTTGGAAACA+AGG + chr6_1:74137046-74137065 Msa0892820:CDS 50.0%
AGGAACCGAAGCTCTTCTCA+TGG + chr6_1:74137089-74137108 Msa0892820:CDS 50.0%
GGAACCGAAGCTCTTCTCAT+GGG + chr6_1:74137090-74137109 Msa0892820:CDS 50.0%
GAACCGAAGCTCTTCTCATG+GGG + chr6_1:74137091-74137110 Msa0892820:CDS 50.0%
TGGTCACAAGAAGAATCGGC+AGG + chr6_1:74139674-74139693 Msa0892820:CDS 50.0%
AGAAGAATCGGCAGGTCGAA+AGG + chr6_1:74139682-74139701 Msa0892820:CDS 50.0%
AACCTACCGTGGTTCAACTC+CGG + chr6_1:74139869-74139888 Msa0892820:intron 50.0%
CTTGAACCGGAGTTGAACCA+CGG - chr6_1:74139878-74139897 None:intergenic 50.0%
CAACCGATAGAACCGGGAAT+AGG - chr6_1:74139953-74139972 None:intergenic 50.0%
!!! GTTTTGGGGGGTGCGCTTTT+GGG - chr6_1:74134780-74134799 None:intergenic 55.0%
!! GCACCGTTTCTGAAGTGGCA+CGG - chr6_1:74134993-74135012 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr6_1:74135250-74135269 Msa0892820:intron 55.0%
TGTCCGTGTCCGTGCTTCAT+AGG - chr6_1:74135321-74135340 None:intergenic 55.0%
TAGCCGAGCTATACGGCTAC+AGG + chr6_1:74136202-74136221 Msa0892820:intron 55.0%
! TTGGTTTAAGGTGGTCGGCG+AGG + chr6_1:74137007-74137026 Msa0892820:intron 55.0%
! TGGTTTAAGGTGGTCGGCGA+GGG + chr6_1:74137008-74137027 Msa0892820:intron 55.0%
! GGCATATGCAATGGCGGAGT+TGG + chr6_1:74137038-74137057 Msa0892820:CDS 55.0%
!! CAAAGAAGGTACCACAGGGC+TGG - chr6_1:74138477-74138496 None:intergenic 55.0%
AACCGGAGTTGAACCACGGT+AGG - chr6_1:74139874-74139893 None:intergenic 55.0%
ACGGCGAACTGTCCTATTCC+CGG + chr6_1:74139938-74139957 Msa0892820:intron 55.0%
!! GGTGCGCTTTTGGGTGGGTT+TGG - chr6_1:74134771-74134790 None:intergenic 60.0%
!!! GGTTTTGGGGGGTGCGCTTT+TGG - chr6_1:74134781-74134800 None:intergenic 60.0%
GTGGTCGGCGAGGGCTATAA+AGG + chr6_1:74137017-74137036 Msa0892820:CDS 60.0%
CTGGTACTACTCCAGCCCTG+TGG + chr6_1:74138463-74138482 Msa0892820:CDS 60.0%
!! TGGGGGGTGCGCTTTTGGGT+GGG - chr6_1:74134776-74134795 None:intergenic 65.0%
!! TTGGGGGGTGCGCTTTTGGG+TGG - chr6_1:74134777-74134796 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 74134718 74140361 74134718 ID=Msa0892820;Name=Msa0892820
chr6_1 mRNA 74134718 74140361 74134718 ID=Msa0892820-mRNA-1;Parent=Msa0892820;Name=Msa0892820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=99|1|1|1|1|1|6|247|240
chr6_1 exon 74134718 74135034 74134718 ID=Msa0892820-mRNA-1:exon:12602;Parent=Msa0892820-mRNA-1
chr6_1 exon 74135127 74135171 74135127 ID=Msa0892820-mRNA-1:exon:12603;Parent=Msa0892820-mRNA-1
chr6_1 exon 74137017 74137126 74137017 ID=Msa0892820-mRNA-1:exon:12604;Parent=Msa0892820-mRNA-1
chr6_1 exon 74138372 74138551 74138372 ID=Msa0892820-mRNA-1:exon:12605;Parent=Msa0892820-mRNA-1
chr6_1 exon 74139633 74139760 74139633 ID=Msa0892820-mRNA-1:exon:12606;Parent=Msa0892820-mRNA-1
chr6_1 exon 74140073 74140361 74140073 ID=Msa0892820-mRNA-1:exon:12607;Parent=Msa0892820-mRNA-1
chr6_1 five_prime_UTR 74134718 74134816 74134718 ID=Msa0892820-mRNA-1:five_prime_utr;Parent=Msa0892820-mRNA-1
chr6_1 CDS 74134817 74135034 74134817 ID=Msa0892820-mRNA-1:cds;Parent=Msa0892820-mRNA-1
chr6_1 CDS 74135127 74135171 74135127 ID=Msa0892820-mRNA-1:cds;Parent=Msa0892820-mRNA-1
chr6_1 CDS 74137017 74137126 74137017 ID=Msa0892820-mRNA-1:cds;Parent=Msa0892820-mRNA-1
chr6_1 CDS 74138372 74138551 74138372 ID=Msa0892820-mRNA-1:cds;Parent=Msa0892820-mRNA-1
chr6_1 CDS 74139633 74139760 74139633 ID=Msa0892820-mRNA-1:cds;Parent=Msa0892820-mRNA-1
chr6_1 CDS 74140073 74140114 74140073 ID=Msa0892820-mRNA-1:cds;Parent=Msa0892820-mRNA-1
chr6_1 three_prime_UTR 74140115 74140361 74140115 ID=Msa0892820-mRNA-1:three_prime_utr;Parent=Msa0892820-mRNA-1
Gene Sequence

>Msa0892820

ATGGCTTCCATTCCAACCTTTTCTTCACACTCTCTTCTTCTCAAACCCAACACCAACACCAACACACTCTTCTCTCGTTCATTCTCCAACAACAACCAATCATGTACTCTCTCTCTAACTTCTCTCTTTGGAACAAAATTCACTCTCCAACGACCCATTTCCATCACAAATTTCCGTGCCACTTCAGAAACGGTGCCGTTTAATCTCCCTACTGACCCGAATCCACAATCTGGTGAAACCAAGAAAACTCCAAATCCTTCAAAGTGGTCGGCGAGGGCTATAAAGGCATATGCAATGGCGGAGTTGGAAACAAGGAAACTTAAGTATCCTAAAGTAGGAACCGAAGCTCTTCTCATGGGGATTTTAATTGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCTAATGGAATTACTTATCTGAAAGTACGCGAACAAACATTAGAGATACTTGGGAAATCTGACTGGTACTACTCCAGCCCTGTGGTACCTTCTTTGACTGAACCACTTCATAAAGCCCTCGATTGGGCACTTAATGAGACATCAAAGTCAGGTGAAGGGGAAACAAACGTGACTCATTTACTTCTTGGAATTTGGTCACAAGAAGAATCGGCAGGTCGAAAGGTCTTGTCTGCTTTAGGTTTCAACGATGAAAAAGCCAAAGAAATTGCTGAAACAGCAGCTAGTGGTGATATTGATTGGAGTTTCAAGAAGCAAGCGTAA

Protein sequence

>Msa0892820

MASIPTFSSHSLLLKPNTNTNTLFSRSFSNNNQSCTLSLTSLFGTKFTLQRPISITNFRATSETVPFNLPTDPNPQSGETKKTPNPSKWSARAIKAYAMAELETRKLKYPKVGTEALLMGILIEGTSKAAKFLRANGITYLKVREQTLEILGKSDWYYSSPVVPSLTEPLHKALDWALNETSKSGEGETNVTHLLLGIWSQEESAGRKVLSALGFNDEKAKEIAETAASGDIDWSFKKQA*