Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340620 | XP_013457718.1 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0.0 | 899 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340620 | sp|P92962|PROT2_ARATH | 40.000 | 440 | 259 | 3 | 15 | 450 | 1 | 439 | 2.84e-116 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340620 | A0A072UPI2 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0.0 | 899 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa1340620 | 0.822382 | 2.440233e-53 | -8.615850e-47 |
| Msa0015100 | Msa1340620 | 0.845969 | 2.914029e-59 | -8.615850e-47 |
| Msa0021980 | Msa1340620 | 0.800055 | 1.724608e-48 | -8.615850e-47 |
| Msa0030030 | Msa1340620 | 0.810810 | 9.578589e-51 | -8.615850e-47 |
| Msa0035110 | Msa1340620 | 0.802563 | 5.287790e-49 | -8.615850e-47 |
| Msa0046310 | Msa1340620 | 0.814558 | 1.449544e-51 | -8.615850e-47 |
| Msa0049770 | Msa1340620 | 0.841919 | 3.548597e-58 | -8.615850e-47 |
| Msa0053480 | Msa1340620 | 0.810064 | 1.387841e-50 | -8.615850e-47 |
| Msa0077330 | Msa1340620 | 0.800016 | 1.756365e-48 | -8.615850e-47 |
| Msa0077390 | Msa1340620 | 0.803664 | 3.129264e-49 | -8.615850e-47 |
| Msa0093440 | Msa1340620 | 0.833083 | 6.539339e-56 | -8.615850e-47 |
| Msa0102750 | Msa1340620 | 0.819671 | 1.027466e-52 | -8.615850e-47 |
| Msa0617370 | Msa1340620 | 0.801725 | 7.863310e-49 | -8.615850e-47 |
| Msa0635470 | Msa1340620 | 0.864842 | 9.086574e-65 | -8.615850e-47 |
| Msa0640380 | Msa1340620 | 0.842337 | 2.749507e-58 | -8.615850e-47 |
| Msa0641020 | Msa1340620 | 0.858565 | 7.549626e-63 | -8.615850e-47 |
| Msa0641030 | Msa1340620 | 0.824369 | 8.380747e-54 | -8.615850e-47 |
| Msa0647000 | Msa1340620 | 0.804893 | 1.735512e-49 | -8.615850e-47 |
| Msa0656270 | Msa1340620 | 0.807207 | 5.659073e-50 | -8.615850e-47 |
| Msa0657860 | Msa1340620 | 0.820313 | 7.328197e-53 | -8.615850e-47 |
| Msa0660880 | Msa1340620 | -0.804638 | 1.962624e-49 | -8.615850e-47 |
| Msa0664020 | Msa1340620 | 0.800173 | 1.631675e-48 | -8.615850e-47 |
| Msa0678820 | Msa1340620 | 0.807394 | 5.163946e-50 | -8.615850e-47 |
| Msa0679560 | Msa1340620 | 0.806661 | 7.381100e-50 | -8.615850e-47 |
| Msa0700070 | Msa1340620 | 0.802320 | 5.932523e-49 | -8.615850e-47 |
| Msa0716740 | Msa1340620 | -0.812885 | 3.384254e-51 | -8.615850e-47 |
| Msa0718240 | Msa1340620 | 0.806766 | 7.012812e-50 | -8.615850e-47 |
| Msa0722930 | Msa1340620 | 0.838663 | 2.516340e-57 | -8.615850e-47 |
| Msa0723140 | Msa1340620 | 0.837216 | 5.924314e-57 | -8.615850e-47 |
| Msa0723210 | Msa1340620 | 0.803351 | 3.634517e-49 | -8.615850e-47 |
| Msa0759380 | Msa1340620 | 0.817244 | 3.646050e-52 | -8.615850e-47 |
| Msa0799290 | Msa1340620 | -0.807885 | 4.061661e-50 | -8.615850e-47 |
| Msa0837510 | Msa1340620 | -0.806785 | 6.948900e-50 | -8.615850e-47 |
| Msa0169960 | Msa1340620 | 0.833322 | 5.701145e-56 | -8.615850e-47 |
| Msa0175920 | Msa1340620 | 0.804748 | 1.861095e-49 | -8.615850e-47 |
| Msa0181290 | Msa1340620 | 0.802758 | 4.819795e-49 | -8.615850e-47 |
| Msa0185640 | Msa1340620 | -0.819053 | 1.421349e-52 | -8.615850e-47 |
| Msa0193200 | Msa1340620 | 0.845197 | 4.720204e-59 | -8.615850e-47 |
| Msa0211010 | Msa1340620 | 0.804930 | 1.705337e-49 | -8.615850e-47 |
| Msa0216550 | Msa1340620 | 0.811855 | 5.681914e-51 | -8.615850e-47 |
| Msa1237260 | Msa1340620 | 0.803685 | 3.097763e-49 | -8.615850e-47 |
| Msa1244830 | Msa1340620 | 0.815399 | 9.433481e-52 | -8.615850e-47 |
| Msa1246040 | Msa1340620 | 0.802386 | 5.751292e-49 | -8.615850e-47 |
| Msa1256540 | Msa1340620 | -0.810651 | 1.036781e-50 | -8.615850e-47 |
| Msa1258950 | Msa1340620 | 0.981194 | 5.329728e-152 | -8.615850e-47 |
| Msa1296960 | Msa1340620 | -0.817827 | 2.694011e-52 | -8.615850e-47 |
| Msa1304850 | Msa1340620 | 0.802323 | 5.924791e-49 | -8.615850e-47 |
| Msa1317710 | Msa1340620 | 0.815588 | 8.562452e-52 | -8.615850e-47 |
| Msa1340620 | Msa1370630 | 0.842240 | 2.917782e-58 | -8.615850e-47 |
| Msa1340620 | Msa1373950 | 0.800848 | 1.188700e-48 | -8.615850e-47 |
| Msa1340620 | Msa1386520 | 0.806887 | 6.612254e-50 | -8.615850e-47 |
| Msa1340620 | Msa1405400 | 0.818434 | 1.964442e-52 | -8.615850e-47 |
| Msa1340620 | Msa1405470 | 0.823171 | 1.598840e-53 | -8.615850e-47 |
| Msa1340620 | Msa1409520 | 0.813584 | 2.377008e-51 | -8.615850e-47 |
| Msa1340620 | Msa1438820 | 0.816202 | 6.244786e-52 | -8.615850e-47 |
| Msa1340620 | Msa1445250 | 0.849680 | 2.768812e-60 | -8.615850e-47 |
| Msa1340620 | Msa1457180 | 0.832932 | 7.128783e-56 | -8.615850e-47 |
| Msa0365360 | Msa1340620 | 0.854127 | 1.513341e-61 | -8.615850e-47 |
| Msa0411000 | Msa1340620 | 0.839158 | 1.873382e-57 | -8.615850e-47 |
| Msa0414070 | Msa1340620 | 0.818923 | 1.521513e-52 | -8.615850e-47 |
| Msa0418000 | Msa1340620 | 0.809970 | 1.454262e-50 | -8.615850e-47 |
| Msa0454940 | Msa1340620 | 0.810021 | 1.417631e-50 | -8.615850e-47 |
| Msa0455230 | Msa1340620 | 0.835564 | 1.559438e-56 | -8.615850e-47 |
| Msa0457370 | Msa1340620 | 0.860653 | 1.777824e-63 | -8.615850e-47 |
| Msa0459120 | Msa1340620 | 0.830329 | 3.121893e-55 | -8.615850e-47 |
| Msa0988500 | Msa1340620 | 0.839112 | 1.925752e-57 | -8.615850e-47 |
| Msa1000020 | Msa1340620 | 0.810128 | 1.344312e-50 | -8.615850e-47 |
| Msa1008340 | Msa1340620 | 0.834034 | 3.784420e-56 | -8.615850e-47 |
| Msa1016130 | Msa1340620 | 0.806796 | 6.910681e-50 | -8.615850e-47 |
| Msa1080790 | Msa1340620 | 0.861687 | 8.609297e-64 | -8.615850e-47 |
| Msa1081600 | Msa1340620 | 0.830312 | 3.152839e-55 | -8.615850e-47 |
| Msa1085960 | Msa1340620 | -0.815038 | 1.134239e-51 | -8.615850e-47 |
| Msa0253370 | Msa1340620 | 0.814263 | 1.683928e-51 | -8.615850e-47 |
| Msa0295850 | Msa1340620 | 0.830223 | 3.314822e-55 | -8.615850e-47 |
| Msa0306130 | Msa1340620 | 0.803174 | 3.954477e-49 | -8.615850e-47 |
| Msa0330400 | Msa1340620 | 0.810099 | 1.363908e-50 | -8.615850e-47 |
| Msa0334170 | Msa1340620 | 0.832792 | 7.722959e-56 | -8.615850e-47 |
| Msa0336270 | Msa1340620 | 0.802945 | 4.409116e-49 | -8.615850e-47 |
| Msa0342340 | Msa1340620 | -0.801732 | 7.836494e-49 | -8.615850e-47 |
| Msa0362430 | Msa1340620 | 0.800358 | 1.496258e-48 | -8.615850e-47 |
| Msa0363460 | Msa1340620 | 0.841099 | 5.832960e-58 | -8.615850e-47 |
| Msa1108780 | Msa1340620 | 0.836233 | 1.055043e-56 | -8.615850e-47 |
| Msa1118930 | Msa1340620 | 0.861930 | 7.254196e-64 | -8.615850e-47 |
| Msa1139240 | Msa1340620 | 0.806766 | 7.015333e-50 | -8.615850e-47 |
| Msa1166370 | Msa1340620 | 0.830938 | 2.215369e-55 | -8.615850e-47 |
| Msa1184050 | Msa1340620 | 0.804110 | 2.527862e-49 | -8.615850e-47 |
| Msa1204980 | Msa1340620 | -0.804366 | 2.236466e-49 | -8.615850e-47 |
| Msa1205010 | Msa1340620 | -0.803545 | 3.312215e-49 | -8.615850e-47 |
| Msa1208180 | Msa1340620 | 0.810661 | 1.031776e-50 | -8.615850e-47 |
| Msa1208340 | Msa1340620 | 0.843530 | 1.324353e-58 | -8.615850e-47 |
| Msa1208710 | Msa1340620 | 0.978786 | 1.468080e-146 | -8.615850e-47 |
| Msa1208760 | Msa1340620 | 0.900848 | 4.856623e-78 | -8.615850e-47 |
| Msa0498920 | Msa1340620 | 0.808261 | 3.378220e-50 | -8.615850e-47 |
| Msa0501470 | Msa1340620 | 0.818221 | 2.194740e-52 | -8.615850e-47 |
| Msa0502910 | Msa1340620 | 0.807302 | 5.401548e-50 | -8.615850e-47 |
| Msa0504630 | Msa1340620 | 0.814431 | 1.545963e-51 | -8.615850e-47 |
| Msa0505660 | Msa1340620 | 0.811426 | 7.044289e-51 | -8.615850e-47 |
| Msa0521900 | Msa1340620 | 0.813887 | 2.038538e-51 | -8.615850e-47 |
| Msa0543900 | Msa1340620 | 0.828168 | 1.044585e-54 | -8.615850e-47 |
| Msa0544930 | Msa1340620 | 0.824618 | 7.320691e-54 | -8.615850e-47 |
| Msa0563140 | Msa1340620 | 0.842279 | 2.849710e-58 | -8.615850e-47 |
| Msa0576400 | Msa1340620 | -0.807308 | 5.386469e-50 | -8.615850e-47 |
| Msa0576990 | Msa1340620 | -0.808074 | 3.702577e-50 | -8.615850e-47 |
| Msa0591780 | Msa1340620 | 0.800043 | 1.734050e-48 | -8.615850e-47 |
| Msa0599770 | Msa1340620 | 0.818431 | 1.967470e-52 | -8.615850e-47 |
| Msa0843280 | Msa1340620 | 0.812300 | 4.544173e-51 | -8.615850e-47 |
| Msa0860270 | Msa1340620 | 0.810256 | 1.261537e-50 | -8.615850e-47 |
| Msa0883660 | Msa1340620 | 0.824812 | 6.589294e-54 | -8.615850e-47 |
| Msa0883670 | Msa1340620 | 0.809910 | 1.498039e-50 | -8.615850e-47 |
| Msa0883700 | Msa1340620 | 0.810102 | 1.361647e-50 | -8.615850e-47 |
| Msa0887000 | Msa1340620 | 0.829389 | 5.290951e-55 | -8.615850e-47 |
| Msa0951720 | Msa1340620 | 0.826998 | 1.993697e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340620 | MtrunA17_Chr4g0058161 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0.0 | 899 |
| Msa1340620 | MtrunA17_Chr5g0436281 | 42.708 | 384 | 218 | 2 | 68 | 450 | 1 | 383 | 1.67e-106 | 320 |
| Msa1340620 | MtrunA17_Chr3g0112971 | 40.930 | 430 | 247 | 3 | 27 | 450 | 8 | 436 | 1.73e-106 | 322 |
| Msa1340620 | MtrunA17_Chr1g0184721 | 29.314 | 423 | 280 | 12 | 41 | 450 | 24 | 440 | 7.20e-48 | 170 |
| Msa1340620 | MtrunA17_Chr1g0198081 | 29.930 | 431 | 273 | 12 | 39 | 449 | 59 | 480 | 4.37e-45 | 163 |
| Msa1340620 | MtrunA17_Chr8g0387941 | 27.130 | 446 | 298 | 14 | 22 | 447 | 9 | 447 | 3.11e-40 | 149 |
| Msa1340620 | MtrunA17_Chr4g0027241 | 27.434 | 452 | 306 | 12 | 18 | 450 | 14 | 462 | 3.23e-38 | 144 |
| Msa1340620 | MtrunA17_Chr6g0458931 | 25.918 | 463 | 307 | 14 | 12 | 448 | 3 | 455 | 4.71e-35 | 135 |
| Msa1340620 | MtrunA17_Chr2g0331721 | 24.086 | 465 | 316 | 14 | 15 | 447 | 1 | 460 | 3.50e-30 | 122 |
| Msa1340620 | MtrunA17_Chr4g0057851 | 25.510 | 392 | 271 | 11 | 68 | 446 | 38 | 421 | 2.89e-29 | 119 |
| Msa1340620 | MtrunA17_Chr5g0422741 | 26.531 | 392 | 269 | 10 | 68 | 447 | 54 | 438 | 7.42e-28 | 115 |
| Msa1340620 | MtrunA17_Chr8g0376991 | 24.235 | 392 | 280 | 10 | 68 | 448 | 51 | 436 | 1.15e-27 | 114 |
| Msa1340620 | MtrunA17_Chr6g0459031 | 26.904 | 394 | 268 | 12 | 68 | 448 | 42 | 428 | 1.46e-26 | 111 |
| Msa1340620 | MtrunA17_Chr6g0458921 | 25.888 | 394 | 272 | 9 | 68 | 448 | 42 | 428 | 1.67e-26 | 110 |
| Msa1340620 | MtrunA17_Chr6g0459021 | 26.087 | 391 | 274 | 9 | 68 | 448 | 62 | 447 | 9.95e-26 | 108 |
| Msa1340620 | MtrunA17_Chr6g0459011 | 26.440 | 382 | 264 | 11 | 68 | 438 | 13 | 388 | 3.34e-25 | 106 |
| Msa1340620 | MtrunA17_Chr7g0230011 | 26.718 | 393 | 269 | 13 | 68 | 448 | 58 | 443 | 8.46e-25 | 106 |
| Msa1340620 | MtrunA17_Chr1g0198531 | 25.641 | 390 | 275 | 11 | 68 | 447 | 52 | 436 | 2.25e-24 | 105 |
| Msa1340620 | MtrunA17_Chr1g0198541 | 24.872 | 390 | 278 | 9 | 68 | 447 | 52 | 436 | 8.00e-24 | 103 |
| Msa1340620 | MtrunA17_Chr3g0077651 | 24.561 | 399 | 268 | 12 | 71 | 448 | 83 | 469 | 1.36e-23 | 102 |
| Msa1340620 | MtrunA17_Chr2g0328081 | 26.087 | 391 | 275 | 9 | 68 | 448 | 42 | 428 | 1.69e-22 | 99.4 |
| Msa1340620 | MtrunA17_Chr4g0038711 | 23.711 | 485 | 299 | 20 | 5 | 447 | 44 | 499 | 4.23e-20 | 92.8 |
| Msa1340620 | MtrunA17_Chr3g0122921 | 22.921 | 445 | 294 | 15 | 29 | 448 | 8 | 428 | 4.98e-20 | 92.0 |
| Msa1340620 | MtrunA17_Chr3g0143701 | 25.428 | 409 | 258 | 16 | 71 | 447 | 115 | 508 | 1.56e-18 | 87.8 |
| Msa1340620 | MtrunA17_Chr6g0459001 | 24.312 | 436 | 266 | 13 | 68 | 448 | 50 | 476 | 5.85e-18 | 85.9 |
| Msa1340620 | MtrunA17_Chr3g0103231 | 25.971 | 412 | 255 | 17 | 71 | 440 | 54 | 457 | 4.37e-16 | 80.1 |
| Msa1340620 | MtrunA17_Chr5g0406331 | 26.027 | 365 | 222 | 16 | 71 | 403 | 117 | 465 | 4.64e-16 | 80.5 |
| Msa1340620 | MtrunA17_Chr1g0146491 | 25.217 | 460 | 285 | 20 | 18 | 433 | 7 | 451 | 1.10e-15 | 79.0 |
| Msa1340620 | MtrunA17_Chr3g0103211 | 24.634 | 410 | 263 | 15 | 71 | 440 | 54 | 457 | 3.15e-15 | 77.4 |
| Msa1340620 | MtrunA17_Chr3g0125081 | 22.653 | 490 | 326 | 19 | 1 | 450 | 2 | 478 | 4.38e-15 | 77.4 |
| Msa1340620 | MtrunA17_Chr4g0027261 | 29.064 | 203 | 113 | 6 | 263 | 450 | 1 | 187 | 1.18e-14 | 72.4 |
| Msa1340620 | MtrunA17_Chr5g0406351 | 23.889 | 360 | 237 | 12 | 71 | 403 | 138 | 487 | 3.00e-14 | 74.7 |
| Msa1340620 | MtrunA17_Chr3g0125091 | 22.495 | 489 | 323 | 19 | 1 | 447 | 2 | 476 | 4.41e-14 | 73.9 |
| Msa1340620 | MtrunA17_Chr3g0140761 | 23.529 | 425 | 267 | 18 | 71 | 447 | 64 | 478 | 5.20e-14 | 73.9 |
| Msa1340620 | MtrunA17_Chr3g0103221 | 24.205 | 409 | 266 | 14 | 71 | 440 | 61 | 464 | 8.97e-14 | 73.2 |
| Msa1340620 | MtrunA17_Chr3g0130651 | 23.846 | 390 | 246 | 13 | 71 | 421 | 57 | 434 | 3.10e-13 | 71.6 |
| Msa1340620 | MtrunA17_Chr1g0146411 | 23.765 | 425 | 265 | 15 | 67 | 447 | 60 | 469 | 9.02e-13 | 70.1 |
| Msa1340620 | MtrunA17_Chr3g0130641 | 21.882 | 425 | 273 | 12 | 71 | 449 | 64 | 475 | 1.43e-12 | 69.3 |
| Msa1340620 | MtrunA17_Chr1g0206871 | 23.636 | 440 | 259 | 19 | 71 | 449 | 46 | 469 | 9.17e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340620 | AT3G55740.1 | 40.000 | 440 | 259 | 3 | 15 | 450 | 1 | 439 | 2.88e-117 | 350 |
| Msa1340620 | AT2G39890.2 | 40.268 | 447 | 257 | 4 | 7 | 450 | 3 | 442 | 1.07e-116 | 349 |
| Msa1340620 | AT2G39890.1 | 40.268 | 447 | 257 | 4 | 7 | 450 | 3 | 442 | 1.07e-116 | 349 |
| Msa1340620 | AT2G36590.1 | 39.359 | 437 | 263 | 2 | 15 | 450 | 1 | 436 | 1.26e-105 | 320 |
| Msa1340620 | AT3G55740.2 | 41.406 | 384 | 223 | 2 | 68 | 450 | 1 | 383 | 6.63e-105 | 317 |
| Msa1340620 | AT3G55740.3 | 41.406 | 384 | 223 | 2 | 68 | 450 | 1 | 383 | 6.63e-105 | 317 |
| Msa1340620 | AT2G39890.3 | 41.667 | 384 | 222 | 2 | 68 | 450 | 1 | 383 | 4.18e-104 | 315 |
| Msa1340620 | AT2G36590.2 | 41.667 | 312 | 181 | 1 | 15 | 325 | 1 | 312 | 2.62e-83 | 259 |
| Msa1340620 | AT5G41800.1 | 28.070 | 399 | 260 | 11 | 71 | 449 | 57 | 448 | 1.48e-37 | 142 |
| Msa1340620 | AT5G40780.1 | 25.221 | 452 | 297 | 16 | 27 | 448 | 6 | 446 | 1.02e-33 | 132 |
| Msa1340620 | AT1G08230.2 | 26.389 | 432 | 289 | 12 | 40 | 450 | 28 | 451 | 1.78e-33 | 131 |
| Msa1340620 | AT5G40780.3 | 25.954 | 393 | 272 | 12 | 68 | 448 | 13 | 398 | 1.11e-32 | 128 |
| Msa1340620 | AT5G40780.2 | 25.954 | 393 | 272 | 12 | 68 | 448 | 13 | 398 | 1.11e-32 | 128 |
| Msa1340620 | AT1G25530.1 | 28.753 | 393 | 261 | 11 | 68 | 448 | 55 | 440 | 1.29e-31 | 126 |
| Msa1340620 | AT1G08230.4 | 27.469 | 324 | 217 | 7 | 141 | 450 | 13 | 332 | 1.12e-30 | 121 |
| Msa1340620 | AT1G08230.6 | 27.469 | 324 | 217 | 7 | 141 | 450 | 13 | 332 | 1.12e-30 | 121 |
| Msa1340620 | AT1G08230.5 | 27.469 | 324 | 217 | 7 | 141 | 450 | 13 | 332 | 1.12e-30 | 121 |
| Msa1340620 | AT1G08230.3 | 27.469 | 324 | 217 | 7 | 141 | 450 | 32 | 351 | 2.44e-30 | 120 |
| Msa1340620 | AT1G48640.1 | 25.163 | 461 | 301 | 16 | 21 | 448 | 4 | 453 | 1.72e-29 | 120 |
| Msa1340620 | AT1G67640.1 | 27.062 | 388 | 268 | 9 | 71 | 448 | 59 | 441 | 3.92e-27 | 113 |
| Msa1340620 | AT1G24400.1 | 25.515 | 388 | 274 | 9 | 71 | 448 | 59 | 441 | 4.04e-26 | 110 |
| Msa1340620 | AT1G61270.1 | 21.826 | 449 | 315 | 14 | 24 | 443 | 2 | 443 | 7.58e-25 | 107 |
| Msa1340620 | AT3G01760.1 | 22.122 | 443 | 309 | 12 | 28 | 443 | 9 | 442 | 4.55e-23 | 101 |
| Msa1340620 | AT1G71680.1 | 23.516 | 455 | 311 | 16 | 19 | 448 | 6 | 448 | 2.52e-18 | 87.4 |
| Msa1340620 | AT4G35180.1 | 23.158 | 380 | 249 | 15 | 71 | 424 | 88 | 450 | 1.17e-15 | 79.3 |
| Msa1340620 | AT1G10010.1 | 24.171 | 422 | 273 | 16 | 71 | 450 | 58 | 474 | 2.64e-15 | 78.2 |
| Msa1340620 | AT1G10010.2 | 24.171 | 422 | 273 | 16 | 71 | 450 | 59 | 475 | 2.85e-15 | 78.2 |
| Msa1340620 | AT1G71680.2 | 23.782 | 349 | 234 | 12 | 19 | 343 | 6 | 346 | 2.00e-14 | 75.1 |
| Msa1340620 | AT1G44100.1 | 22.877 | 424 | 275 | 13 | 71 | 447 | 58 | 476 | 3.03e-13 | 72.0 |
| Msa1340620 | AT5G09220.1 | 21.905 | 420 | 279 | 16 | 71 | 447 | 76 | 489 | 3.95e-12 | 68.6 |
| Msa1340620 | AT4G35180.2 | 25.106 | 235 | 160 | 8 | 71 | 293 | 88 | 318 | 2.72e-11 | 65.1 |
| Msa1340620 | AT5G49630.1 | 22.062 | 485 | 300 | 21 | 18 | 447 | 17 | 478 | 3.62e-11 | 65.5 |
Find 122 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGCAGGAAAATCAAATT+TGG | 0.176401 | tig0004288:+9743 | Msa1340620:intron |
| TCTATTTCTTACTGAAATTA+AGG | 0.194520 | tig0004288:-11057 | None:intergenic |
| ATCATATTGCTCTTTGTTAT+TGG | 0.207153 | tig0004288:+8550 | Msa1340620:CDS |
| GACACTAGATTTCTAGAAAT+TGG | 0.207837 | tig0004288:+10651 | Msa1340620:CDS |
| CAATATCTGCTATGAGAAAT+TGG | 0.226402 | tig0004288:+9551 | Msa1340620:CDS |
| ATTGGCAAGGGTATGCATTC+AGG | 0.273550 | tig0004288:+10669 | Msa1340620:CDS |
| CATGATCTTCCTTAAGATAA+AGG | 0.274057 | tig0004288:+10836 | Msa1340620:CDS |
| ATTGTTGGATATTGGGCTTA+TGG | 0.290460 | tig0004288:+10231 | Msa1340620:CDS |
| CAGTTTCTCTAACCTGATAA+TGG | 0.291775 | tig0004288:+8504 | Msa1340620:CDS |
| TCTACACAGCTTATGCTAAT+TGG | 0.293309 | tig0004288:+8575 | Msa1340620:CDS |
| AACAAAGTGTTCAACAGTTT+TGG | 0.296566 | tig0004288:+9798 | Msa1340620:CDS |
| TGTTACTATTGTTGGATATT+GGG | 0.301868 | tig0004288:+10224 | Msa1340620:CDS |
| TCATTCAATTTGCAGATTCA+TGG | 0.311610 | tig0004288:+8431 | Msa1340620:intron |
| CCACCATAACTATTGTTATA+AGG | 0.313362 | tig0004288:+11158 | Msa1340620:three_prime_UTR |
| GTGTTACTATTGTTGGATAT+TGG | 0.315360 | tig0004288:+10223 | Msa1340620:CDS |
| GGTACTCATATATATCTAAA+AGG | 0.318145 | tig0004288:-8099 | None:intergenic |
| TATGTCAGACTCAAATAATT+TGG | 0.320135 | tig0004288:-8052 | None:intergenic |
| TTCCTCATGTTCTTCACTGC+TGG | 0.321851 | tig0004288:-10156 | None:intergenic |
| GACCTCATGGGATTTGTTTA+CGG | 0.325636 | tig0004288:+8649 | Msa1340620:CDS |
| TTGTTGGATATTGGGCTTAT+GGG | 0.331440 | tig0004288:+10232 | Msa1340620:CDS |
| CTAAGGATGTGTTTCTATAC+TGG | 0.332526 | tig0004288:+10717 | Msa1340620:CDS |
| TTTACGAAGTCACCCATAAA+AGG | 0.336030 | tig0004288:-10765 | None:intergenic |
| CCTTGGAGGCAAGGCACTTA+AGG | 0.354020 | tig0004288:+9350 | Msa1340620:CDS |
| TATTATGGTGTTACTATTGT+TGG | 0.358408 | tig0004288:+10216 | Msa1340620:CDS |
| CTCACTCTCAACCTAGAAAA+TGG | 0.360333 | tig0004288:+8203 | Msa1340620:CDS |
| GAAAGGTCATGAGAATCATT+TGG | 0.362478 | tig0004288:-8245 | None:intergenic |
| GGTGACTTCGTAAACTTGTT+AGG | 0.368829 | tig0004288:+10774 | Msa1340620:CDS |
| GACAAAGATTTCAACGTTAG+TGG | 0.376792 | tig0004288:+9765 | Msa1340620:CDS |
| TATCTTCCTGAAAACTTAAG+TGG | 0.378113 | tig0004288:+10270 | Msa1340620:CDS |
| GTGGGGTTGATGTTGGTAAC+AGG | 0.399467 | tig0004288:+8460 | Msa1340620:CDS |
| GGTACCAATTCATGAGGCTT+TGG | 0.402518 | tig0004288:+10629 | Msa1340620:CDS |
| TTTCCTTATAACAATAGTTA+TGG | 0.402878 | tig0004288:-11161 | None:intergenic |
| CAATACTACATAGTTGTAAC+AGG | 0.406685 | tig0004288:+9493 | Msa1340620:CDS |
| ATGATCTTCCTTAAGATAAA+GGG | 0.407990 | tig0004288:+10837 | Msa1340620:CDS |
| GTGTCCAAAGCCTCATGAAT+TGG | 0.413129 | tig0004288:-10633 | None:intergenic |
| CAACCACAATTTCAGCTCTT+CGG | 0.420583 | tig0004288:+10931 | Msa1340620:CDS |
| GATCTTACATATACATATGA+TGG | 0.424207 | tig0004288:+11083 | Msa1340620:three_prime_UTR |
| TTTCTCATAGCAGATATTGT+TGG | 0.424947 | tig0004288:-9547 | None:intergenic |
| AACCCAATGGAACCATTATC+AGG | 0.426560 | tig0004288:-8516 | None:intergenic |
| GACCCTTCTTCTTGGAAACA+TGG | 0.438318 | tig0004288:+9317 | Msa1340620:CDS |
| ATCTTAAGGAAGATCATGCT+TGG | 0.440044 | tig0004288:-10831 | None:intergenic |
| CAGTATAGAAACACATCCTT+AGG | 0.441046 | tig0004288:-10716 | None:intergenic |
| AAAACTTAAGTGGACCTAGA+TGG | 0.441222 | tig0004288:+10280 | Msa1340620:CDS |
| CTCATATATATCTAAAAGGT+TGG | 0.444752 | tig0004288:-8095 | None:intergenic |
| TGGTTCCATTGGGTTGGACA+TGG | 0.445661 | tig0004288:+8524 | Msa1340620:CDS |
| AAAGGTCATGAGAATCATTT+GGG | 0.445677 | tig0004288:-8244 | None:intergenic |
| CAGAATTTAGTGATTCTCCT+TGG | 0.449658 | tig0004288:+9464 | Msa1340620:CDS |
| TGGCATGCTTCCTGAGATAC+AGG | 0.453025 | tig0004288:+9854 | Msa1340620:CDS |
| CCTTAAGTGCCTTGCCTCCA+AGG | 0.453288 | tig0004288:-9350 | None:intergenic |
| TAACCTGATAATGGTTCCAT+TGG | 0.457404 | tig0004288:+8513 | Msa1340620:CDS |
| CAGAGAAGAAGGTGTGGCAT+TGG | 0.459646 | tig0004288:+10874 | Msa1340620:CDS |
| AACATGGGTTTCATCCTCCT+TGG | 0.459771 | tig0004288:+9333 | Msa1340620:CDS |
| AAAACTGAGAAGTCCATGTT+AGG | 0.461065 | tig0004288:-9293 | None:intergenic |
| AGCTTATGCTAATTGGCTCT+TGG | 0.463736 | tig0004288:+8582 | Msa1340620:CDS |
| TTTGCACCCGTGCAATGCAC+GGG | 0.479833 | tig0004288:+11235 | Msa1340620:three_prime_UTR |
| CATAGCAGATATTGTTGGAA+TGG | 0.481736 | tig0004288:-9542 | None:intergenic |
| ACCCTTCTTCTTGGAAACAT+GGG | 0.482194 | tig0004288:+9318 | Msa1340620:CDS |
| TCTTAAGGAAGATCATGCTT+GGG | 0.483001 | tig0004288:-10830 | None:intergenic |
| AACCCATGTTTCCAAGAAGA+AGG | 0.483026 | tig0004288:-9320 | None:intergenic |
| AACAGCTAGAACAGAGAAGA+AGG | 0.483759 | tig0004288:+10863 | Msa1340620:CDS |
| GGTTCCATTGGGTTGGACAT+GGG | 0.484989 | tig0004288:+8525 | Msa1340620:CDS |
| AGGAAGCATGCCACTGGTGT+TGG | 0.490553 | tig0004288:-9844 | None:intergenic |
| TTGGCAAGGGTATGCATTCA+GGG | 0.493661 | tig0004288:+10670 | Msa1340620:CDS |
| ATATTGGGCTTATGGGTCAA+TGG | 0.495313 | tig0004288:+10239 | Msa1340620:CDS |
| TGATATATGACCTGTATCTC+AGG | 0.498117 | tig0004288:-9864 | None:intergenic |
| GTTCCATTGGGTTGGACATG+GGG | 0.499204 | tig0004288:+8526 | Msa1340620:CDS |
| TTTCATCCTCCTTGGAGGCA+AGG | 0.502431 | tig0004288:+9341 | Msa1340620:CDS |
| TGATAATGGTTCCATTGGGT+TGG | 0.502891 | tig0004288:+8518 | Msa1340620:CDS |
| AACCTGATAATGGTTCCATT+GGG | 0.503329 | tig0004288:+8514 | Msa1340620:CDS |
| TGCTCTACCTTCAACCTCCA+TGG | 0.503346 | tig0004288:-8165 | None:intergenic |
| ATGGGTTTCATCCTCCTTGG+AGG | 0.506070 | tig0004288:+9336 | Msa1340620:CDS |
| CGAAGATGTATCACCTAACA+TGG | 0.509148 | tig0004288:+9280 | Msa1340620:CDS |
| TGGATAGATAAATAATCAGT+GGG | 0.509595 | tig0004288:-8032 | None:intergenic |
| CATTAGATATAGAGACCTCA+TGG | 0.510064 | tig0004288:+8636 | Msa1340620:CDS |
| TGAAACGCTTATTTCTCCTA+AGG | 0.514219 | tig0004288:+10700 | Msa1340620:CDS |
| TAACAGGCTTCAACTGCGGT+TGG | 0.515896 | tig0004288:+8476 | Msa1340620:CDS |
| CCTTATAACAATAGTTATGG+TGG | 0.516027 | tig0004288:-11158 | None:intergenic |
| AATTTAGTGATTCTCCTTGG+AGG | 0.519184 | tig0004288:+9467 | Msa1340620:CDS |
| GTCAGTGTTGCAGTCAAAGA+TGG | 0.524525 | tig0004288:+9619 | Msa1340620:CDS |
| ATTTGCACCCGTGCAATGCA+CGG | 0.530492 | tig0004288:+11234 | Msa1340620:three_prime_UTR |
| CACTGCTGGCTTACGTAGAG+TGG | 0.543561 | tig0004288:-10142 | None:intergenic |
| AAGGTTGGAGCACACTAAAG+TGG | 0.545015 | tig0004288:-8080 | None:intergenic |
| ATATTCACCATGGAGGTTGA+AGG | 0.546483 | tig0004288:+8158 | Msa1340620:exon |
| TGCAGATTCATGGCAACAAG+TGG | 0.552494 | tig0004288:+8441 | Msa1340620:intron |
| TATCTCAGGAAGCATGCCAC+TGG | 0.556314 | tig0004288:-9850 | None:intergenic |
| CAATAGTATGAGCAGTAGAA+AGG | 0.557474 | tig0004288:-8262 | None:intergenic |
| TACTGTATATTGTGAGTACA+AGG | 0.558919 | tig0004288:-10181 | None:intergenic |
| CAGATTCATGGCAACAAGTG+GGG | 0.568182 | tig0004288:+8443 | Msa1340620:intron |
| ATGTAGTATTGAAGCCTCCA+AGG | 0.574852 | tig0004288:-9481 | None:intergenic |
| GCAGATTCATGGCAACAAGT+GGG | 0.575388 | tig0004288:+8442 | Msa1340620:intron |
| ATCTTACATATACATATGAT+GGG | 0.576155 | tig0004288:+11084 | Msa1340620:three_prime_UTR |
| GTAAAATCATTGTATCGTTG+TGG | 0.576333 | tig0004288:+11129 | Msa1340620:three_prime_UTR |
| ATGAGCACATTGATCCATCT+AGG | 0.576845 | tig0004288:-10294 | None:intergenic |
| TAGATTTCTAGAAATTGGCA+AGG | 0.581595 | tig0004288:+10656 | Msa1340620:CDS |
| TCTTTGCCGATGTATGATTG+TGG | 0.582661 | tig0004288:+10985 | Msa1340620:exon |
| ACCCATGTTTCCAAGAAGAA+GGG | 0.593904 | tig0004288:-9319 | None:intergenic |
| TTGGATAGATAAATAATCAG+TGG | 0.594978 | tig0004288:-8033 | None:intergenic |
| TTGCACCCGTGCAATGCACG+GGG | 0.596424 | tig0004288:+11236 | Msa1340620:three_prime_UTR |
| GTTTGTGGTACCAATTCATG+AGG | 0.598447 | tig0004288:+10623 | Msa1340620:CDS |
| ATACCCCATGTCCAACCCAA+TGG | 0.600753 | tig0004288:-8529 | None:intergenic |
| GCACCCGTGCAATGCACGGG+GGG | 0.609495 | tig0004288:+11238 | Msa1340620:three_prime_UTR |
| TTGGTAACAGGCTTCAACTG+CGG | 0.609692 | tig0004288:+8472 | Msa1340620:CDS |
| GCAACAAGTGGGGTTGATGT+TGG | 0.615486 | tig0004288:+8453 | Msa1340620:CDS |
| GATCATGCTTGGGAACATGA+AGG | 0.615842 | tig0004288:-10820 | None:intergenic |
| CAAAATCCACAATCATACAT+CGG | 0.629415 | tig0004288:-10991 | None:intergenic |
| TCTGCTATGAGAAATTGGCT+AGG | 0.630609 | tig0004288:+9556 | Msa1340620:CDS |
| ATTAGATATAGAGACCTCAT+GGG | 0.632247 | tig0004288:+8637 | Msa1340620:CDS |
| AGCCAGCAGTGAAGAACATG+AGG | 0.634502 | tig0004288:+10154 | Msa1340620:CDS |
| AGATTTCTAGAAATTGGCAA+GGG | 0.638033 | tig0004288:+10657 | Msa1340620:CDS |
| CTTGGGAACATGAAGGTGAG+AGG | 0.639270 | tig0004288:-10813 | None:intergenic |
| CTAGAACAGAGAAGAAGGTG+TGG | 0.642518 | tig0004288:+10868 | Msa1340620:CDS |
| GAACCGAAGAGCTGAAATTG+TGG | 0.644045 | tig0004288:-10934 | None:intergenic |
| AAGAAATGCTATGTATGCTA+AGG | 0.646313 | tig0004288:-9596 | None:intergenic |
| TTGTACTCACAATATACAGT+AGG | 0.648585 | tig0004288:+10183 | Msa1340620:CDS |
| ATGAGTTAACATATTCACCA+TGG | 0.656060 | tig0004288:+8148 | Msa1340620:exon |
| ATCATTGTTACCAACACCAG+TGG | 0.656759 | tig0004288:+9834 | Msa1340620:CDS |
| TGGCAAGGGTATGCATTCAG+GGG | 0.680488 | tig0004288:+10671 | Msa1340620:CDS |
| TGCACCCGTGCAATGCACGG+GGG | 0.694347 | tig0004288:+11237 | Msa1340620:three_prime_UTR |
| ACTGCTCATACTATTGACAA+AGG | 0.700231 | tig0004288:+8269 | Msa1340620:CDS |
| AGTTAACATATTCACCATGG+AGG | 0.702600 | tig0004288:+8151 | Msa1340620:exon |
| GACCGTAAACAAATCCCATG+AGG | 0.724234 | tig0004288:-8651 | None:intergenic |
| TAAGTGCCTTGCCTCCAAGG+AGG | 0.727047 | tig0004288:-9347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATAAAATATTATGA+TGG | + | tig0004288:8801-8820 | Msa1340620:intron | 10.0% |
| !! | ATTTACAAATTATAAATGAT+TGG | + | tig0004288:9381-9400 | Msa1340620:intron | 10.0% |
| !!! | AAAATATATTTTGAAATCAA+AGG | - | tig0004288:9674-9693 | None:intergenic | 10.0% |
| !! | TAAAAATTAATTACAAAAGA+TGG | - | tig0004288:10093-10112 | None:intergenic | 10.0% |
| !!! | TTTTCAGTATTTTATTTCTT+GGG | - | tig0004288:7933-7952 | None:intergenic | 15.0% |
| !!! | ATTTTCAGTATTTTATTTCT+TGG | - | tig0004288:7934-7953 | None:intergenic | 15.0% |
| !! | ATAAAAAATAGTGATCTATA+TGG | + | tig0004288:9052-9071 | Msa1340620:intron | 15.0% |
| !!! | GTTAATTAGTTTAAAAAGAA+AGG | - | tig0004288:9158-9177 | None:intergenic | 15.0% |
| !! | TTCAATATAATTATATGTGT+CGG | - | tig0004288:10436-10455 | None:intergenic | 15.0% |
| !!! | TTTCAGTATTTTATTTCTTG+GGG | - | tig0004288:7932-7951 | None:intergenic | 20.0% |
| !!! | ATTTCTGCAATATAGAATTT+TGG | - | tig0004288:8713-8732 | None:intergenic | 20.0% |
| !! | CATAAAATATTATGATGGTA+TGG | + | tig0004288:8806-8825 | Msa1340620:intron | 20.0% |
| !!! | TTTTTTATGTCTCTAGATAT+CGG | - | tig0004288:8846-8865 | None:intergenic | 20.0% |
| !! | AAACAATTTCATCTTAATCT+AGG | - | tig0004288:9123-9142 | None:intergenic | 20.0% |
| !!! | ATATATTTTGAAATCAAAGG+TGG | - | tig0004288:9671-9690 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | tig0004288:10461-10480 | Msa1340620:intron | 20.0% |
| !!! | TCTATTTCTTACTGAAATTA+AGG | - | tig0004288:11060-11079 | None:intergenic | 20.0% |
| !! | ATCTTACATATACATATGAT+GGG | + | tig0004288:11084-11103 | Msa1340620:three_prime_UTR | 20.0% |
| !!! | TTACATTTTCAATTCTGTAA+TGG | - | tig0004288:11113-11132 | None:intergenic | 20.0% |
| !! | TTTCCTTATAACAATAGTTA+TGG | - | tig0004288:11164-11183 | None:intergenic | 20.0% |
| !!! | AATTTGACTGCATTTTTTGT+GGG | - | tig0004288:7906-7925 | None:intergenic | 25.0% |
| !!! | TAATTTGACTGCATTTTTTG+TGG | - | tig0004288:7907-7926 | None:intergenic | 25.0% |
| ! | TGGATAGATAAATAATCAGT+GGG | - | tig0004288:8035-8054 | None:intergenic | 25.0% |
| ! | TTGGATAGATAAATAATCAG+TGG | - | tig0004288:8036-8055 | None:intergenic | 25.0% |
| ! | TATGTCAGACTCAAATAATT+TGG | - | tig0004288:8055-8074 | None:intergenic | 25.0% |
| ! | CTCATATATATCTAAAAGGT+TGG | - | tig0004288:8098-8117 | None:intergenic | 25.0% |
| ! | GGTACTCATATATATCTAAA+AGG | - | tig0004288:8102-8121 | None:intergenic | 25.0% |
| !! | ATCATATTGCTCTTTGTTAT+TGG | + | tig0004288:8550-8569 | Msa1340620:CDS | 25.0% |
| ! | ATTCTATATTGCAGAAATTG+AGG | + | tig0004288:8715-8734 | Msa1340620:intron | 25.0% |
| ! | CATAAAAAATCATGATGTCA+TGG | + | tig0004288:8857-8876 | Msa1340620:intron | 25.0% |
| !! | TTTTATGCAGTCACATAATT+TGG | - | tig0004288:9038-9057 | None:intergenic | 25.0% |
| ! | CTTTCATAGTTTCAATTAAG+AGG | - | tig0004288:9219-9238 | None:intergenic | 25.0% |
| ! | ACTATGAAAGAGATTCTTAA+TGG | + | tig0004288:9229-9248 | Msa1340620:intron | 25.0% |
| !! | GAGTAACTTTTTAGATAAAG+TGG | + | tig0004288:9415-9434 | Msa1340620:intron | 25.0% |
| !!! | GAGGGAGTATTTATTAATTA+TGG | - | tig0004288:9902-9921 | None:intergenic | 25.0% |
| !!! | GTGAAGTTGAGTTATTTTTT+TGG | + | tig0004288:10113-10132 | Msa1340620:intron | 25.0% |
| !!! | TATTATGGTGTTACTATTGT+TGG | + | tig0004288:10216-10235 | Msa1340620:CDS | 25.0% |
| ! | TGTTACTATTGTTGGATATT+GGG | + | tig0004288:10224-10243 | Msa1340620:CDS | 25.0% |
| ! | ATTTAACCACTCAAAAAATG+AGG | - | tig0004288:10520-10539 | None:intergenic | 25.0% |
| ! | ATGATCTTCCTTAAGATAAA+GGG | + | tig0004288:10837-10856 | Msa1340620:CDS | 25.0% |
| ! | GATCTTACATATACATATGA+TGG | + | tig0004288:11083-11102 | Msa1340620:three_prime_UTR | 25.0% |
| TTTCCAAAAACACAAGAGTT+TGG | - | tig0004288:8123-8142 | None:intergenic | 30.0% | |
| !!! | ACTCTTGTGTTTTTGGAAAT+TGG | + | tig0004288:8124-8143 | Msa1340620:five_prime_UTR | 30.0% |
| ATGAGTTAACATATTCACCA+TGG | + | tig0004288:8148-8167 | Msa1340620:exon | 30.0% | |
| ! | TGTTTTCTTGACCATTTTCT+AGG | - | tig0004288:8217-8236 | None:intergenic | 30.0% |
| AAAGGTCATGAGAATCATTT+GGG | - | tig0004288:8247-8266 | None:intergenic | 30.0% | |
| TCATTCAATTTGCAGATTCA+TGG | + | tig0004288:8431-8450 | Msa1340620:intron | 30.0% | |
| ATTAGATATAGAGACCTCAT+GGG | + | tig0004288:8637-8656 | Msa1340620:CDS | 30.0% | |
| AAAATTCCGATCATATGCAA+AGG | + | tig0004288:8772-8791 | Msa1340620:intron | 30.0% | |
| CTGATGTGCATACAAAATTA+AGG | + | tig0004288:9089-9108 | Msa1340620:intron | 30.0% | |
| !! | AAAAAGAAAGGCGTGTTTTT+AGG | - | tig0004288:9146-9165 | None:intergenic | 30.0% |
| TATTACTCCATGATTTCTCT+AGG | + | tig0004288:9255-9274 | Msa1340620:intron | 30.0% | |
| !!! | AAGTGGTTGTTTTTTGTGAT+AGG | + | tig0004288:9432-9451 | Msa1340620:intron | 30.0% |
| CAATACTACATAGTTGTAAC+AGG | + | tig0004288:9493-9512 | Msa1340620:CDS | 30.0% | |
| TTTCTCATAGCAGATATTGT+TGG | - | tig0004288:9550-9569 | None:intergenic | 30.0% | |
| CAATATCTGCTATGAGAAAT+TGG | + | tig0004288:9551-9570 | Msa1340620:CDS | 30.0% | |
| AAGAAATGCTATGTATGCTA+AGG | - | tig0004288:9599-9618 | None:intergenic | 30.0% | |
| TTAATGCTATGGTTTGACTA+GGG | - | tig0004288:9700-9719 | None:intergenic | 30.0% | |
| TTTAATGCTATGGTTTGACT+AGG | - | tig0004288:9701-9720 | None:intergenic | 30.0% | |
| GGTTGCTTAATTTAATGCTA+TGG | - | tig0004288:9711-9730 | None:intergenic | 30.0% | |
| !! | AACAAAGTGTTCAACAGTTT+TGG | + | tig0004288:9798-9817 | Msa1340620:CDS | 30.0% |
| TGCTTATAATAATGACGAGA+GGG | - | tig0004288:9920-9939 | None:intergenic | 30.0% | |
| TTGCTTATAATAATGACGAG+AGG | - | tig0004288:9921-9940 | None:intergenic | 30.0% | |
| TATTCAATGTACCTAGAAAG+TGG | - | tig0004288:9948-9967 | None:intergenic | 30.0% | |
| ! | GTTTTGCTAATAATAGTGAC+CGG | + | tig0004288:10033-10052 | Msa1340620:intron | 30.0% |
| AAATAGTTCAATACTCACTC+CGG | - | tig0004288:10055-10074 | None:intergenic | 30.0% | |
| TACTGTATATTGTGAGTACA+AGG | - | tig0004288:10184-10203 | None:intergenic | 30.0% | |
| TTGTACTCACAATATACAGT+AGG | + | tig0004288:10183-10202 | Msa1340620:CDS | 30.0% | |
| !!! | GTAGGAGTCTTGTTTTATTA+TGG | + | tig0004288:10201-10220 | Msa1340620:CDS | 30.0% |
| ! | GTGTTACTATTGTTGGATAT+TGG | + | tig0004288:10223-10242 | Msa1340620:CDS | 30.0% |
| TATCTTCCTGAAAACTTAAG+TGG | + | tig0004288:10270-10289 | Msa1340620:CDS | 30.0% | |
| ACATGTAAGTATATGAAGCA+CGG | + | tig0004288:10353-10372 | Msa1340620:intron | 30.0% | |
| ! | ATAATTATATGTGTCGGTGT+CGG | - | tig0004288:10430-10449 | None:intergenic | 30.0% |
| !!! | ACTTTTTTCAGCAACTTGAA+GGG | + | tig0004288:10561-10580 | Msa1340620:intron | 30.0% |
| ! | TTTTGTAATGCAGTTGTTTG+TGG | + | tig0004288:10608-10627 | Msa1340620:intron | 30.0% |
| ! | GACACTAGATTTCTAGAAAT+TGG | + | tig0004288:10651-10670 | Msa1340620:CDS | 30.0% |
| ! | TAGATTTCTAGAAATTGGCA+AGG | + | tig0004288:10656-10675 | Msa1340620:CDS | 30.0% |
| ! | AGATTTCTAGAAATTGGCAA+GGG | + | tig0004288:10657-10676 | Msa1340620:CDS | 30.0% |
| CATGATCTTCCTTAAGATAA+AGG | + | tig0004288:10836-10855 | Msa1340620:CDS | 30.0% | |
| !! | CTGTTTTTCCCTTTATCTTA+AGG | - | tig0004288:10848-10867 | None:intergenic | 30.0% |
| CAAAATCCACAATCATACAT+CGG | - | tig0004288:10994-11013 | None:intergenic | 30.0% | |
| GTAAAATCATTGTATCGTTG+TGG | + | tig0004288:11129-11148 | Msa1340620:three_prime_UTR | 30.0% | |
| CCTTATAACAATAGTTATGG+TGG | - | tig0004288:11161-11180 | None:intergenic | 30.0% | |
| CCACCATAACTATTGTTATA+AGG | + | tig0004288:11158-11177 | Msa1340620:three_prime_UTR | 30.0% | |
| ! | GTACCAAACTCTTGTGTTTT+TGG | + | tig0004288:8117-8136 | Msa1340620:five_prime_UTR | 35.0% |
| AGTTAACATATTCACCATGG+AGG | + | tig0004288:8151-8170 | Msa1340620:exon | 35.0% | |
| GAAAGGTCATGAGAATCATT+TGG | - | tig0004288:8248-8267 | None:intergenic | 35.0% | |
| CAATAGTATGAGCAGTAGAA+AGG | - | tig0004288:8265-8284 | None:intergenic | 35.0% | |
| ACTGCTCATACTATTGACAA+AGG | + | tig0004288:8269-8288 | Msa1340620:CDS | 35.0% | |
| CAGTTTCTCTAACCTGATAA+TGG | + | tig0004288:8504-8523 | Msa1340620:CDS | 35.0% | |
| !! | TAACCTGATAATGGTTCCAT+TGG | + | tig0004288:8513-8532 | Msa1340620:CDS | 35.0% |
| !! | AACCTGATAATGGTTCCATT+GGG | + | tig0004288:8514-8533 | Msa1340620:CDS | 35.0% |
| TCTACACAGCTTATGCTAAT+TGG | + | tig0004288:8575-8594 | Msa1340620:CDS | 35.0% | |
| CATTAGATATAGAGACCTCA+TGG | + | tig0004288:8636-8655 | Msa1340620:CDS | 35.0% | |
| ACACATCAGTCACATAATCT+AGG | - | tig0004288:8883-8902 | None:intergenic | 35.0% | |
| TGCACTTGAGTCACATAATT+TGG | - | tig0004288:8935-8954 | None:intergenic | 35.0% | |
| AAAACTGAGAAGTCCATGTT+AGG | - | tig0004288:9296-9315 | None:intergenic | 35.0% | |
| CAGAATTTAGTGATTCTCCT+TGG | + | tig0004288:9464-9483 | Msa1340620:CDS | 35.0% | |
| AATTTAGTGATTCTCCTTGG+AGG | + | tig0004288:9467-9486 | Msa1340620:CDS | 35.0% | |
| CATAGCAGATATTGTTGGAA+TGG | - | tig0004288:9545-9564 | None:intergenic | 35.0% | |
| GCAACCTTATCCATTTATGT+TGG | + | tig0004288:9725-9744 | Msa1340620:intron | 35.0% | |
| ! | GATTTTCCTGCCAACATAAA+TGG | - | tig0004288:9738-9757 | None:intergenic | 35.0% |
| GTTGGCAGGAAAATCAAATT+TGG | + | tig0004288:9743-9762 | Msa1340620:intron | 35.0% | |
| GACAAAGATTTCAACGTTAG+TGG | + | tig0004288:9765-9784 | Msa1340620:CDS | 35.0% | |
| TGATATATGACCTGTATCTC+AGG | - | tig0004288:9867-9886 | None:intergenic | 35.0% | |
| TAAGCAAAACTCCACTTTCT+AGG | + | tig0004288:9934-9953 | Msa1340620:intron | 35.0% | |
| ATTGTTGGATATTGGGCTTA+TGG | + | tig0004288:10231-10250 | Msa1340620:CDS | 35.0% | |
| TTGTTGGATATTGGGCTTAT+GGG | + | tig0004288:10232-10251 | Msa1340620:CDS | 35.0% | |
| AAAACTTAAGTGGACCTAGA+TGG | + | tig0004288:10280-10299 | Msa1340620:CDS | 35.0% | |
| AACCACTCAAAAAATGAGGA+CGG | - | tig0004288:10516-10535 | None:intergenic | 35.0% | |
| !!! | CACTTTTTTCAGCAACTTGA+AGG | + | tig0004288:10560-10579 | Msa1340620:intron | 35.0% |
| ! | TGAAACGCTTATTTCTCCTA+AGG | + | tig0004288:10700-10719 | Msa1340620:CDS | 35.0% |
| CAGTATAGAAACACATCCTT+AGG | - | tig0004288:10719-10738 | None:intergenic | 35.0% | |
| ! | CTAAGGATGTGTTTCTATAC+TGG | + | tig0004288:10717-10736 | Msa1340620:CDS | 35.0% |
| TTTACGAAGTCACCCATAAA+AGG | - | tig0004288:10768-10787 | None:intergenic | 35.0% | |
| TCTTAAGGAAGATCATGCTT+GGG | - | tig0004288:10833-10852 | None:intergenic | 35.0% | |
| ATCTTAAGGAAGATCATGCT+TGG | - | tig0004288:10834-10853 | None:intergenic | 35.0% | |
| ATATTCACCATGGAGGTTGA+AGG | + | tig0004288:8158-8177 | Msa1340620:exon | 40.0% | |
| CTCACTCTCAACCTAGAAAA+TGG | + | tig0004288:8203-8222 | Msa1340620:CDS | 40.0% | |
| AACCCAATGGAACCATTATC+AGG | - | tig0004288:8519-8538 | None:intergenic | 40.0% | |
| !! | TGATAATGGTTCCATTGGGT+TGG | + | tig0004288:8518-8537 | Msa1340620:CDS | 40.0% |
| ! | AGCTTATGCTAATTGGCTCT+TGG | + | tig0004288:8582-8601 | Msa1340620:CDS | 40.0% |
| ! | GCAGCTTTTCATTTCATCGA+TGG | + | tig0004288:8604-8623 | Msa1340620:CDS | 40.0% |
| ! | GACCTCATGGGATTTGTTTA+CGG | + | tig0004288:8649-8668 | Msa1340620:CDS | 40.0% |
| AAGATTGTGACGTGATCATG+TGG | - | tig0004288:8741-8760 | None:intergenic | 40.0% | |
| TTCCGATCATATGCAAAGGA+TGG | + | tig0004288:8776-8795 | Msa1340620:intron | 40.0% | |
| GTCCATCCTTTGCATATGAT+CGG | - | tig0004288:8781-8800 | None:intergenic | 40.0% | |
| ACGCATAAGTTGCATGATCT+AGG | - | tig0004288:8986-9005 | None:intergenic | 40.0% | |
| ! | GCACATCAGACACATGATTT+TGG | - | tig0004288:9078-9097 | None:intergenic | 40.0% |
| CTTCGTTCCTAGAGAAATCA+TGG | - | tig0004288:9265-9284 | None:intergenic | 40.0% | |
| CGAAGATGTATCACCTAACA+TGG | + | tig0004288:9280-9299 | Msa1340620:CDS | 40.0% | |
| ! | CAGTTTTTGACCCTTCTTCT+TGG | + | tig0004288:9309-9328 | Msa1340620:CDS | 40.0% |
| ACCCTTCTTCTTGGAAACAT+GGG | + | tig0004288:9318-9337 | Msa1340620:CDS | 40.0% | |
| ACCCATGTTTCCAAGAAGAA+GGG | - | tig0004288:9322-9341 | None:intergenic | 40.0% | |
| AACCCATGTTTCCAAGAAGA+AGG | - | tig0004288:9323-9342 | None:intergenic | 40.0% | |
| ! | ATGTAGTATTGAAGCCTCCA+AGG | - | tig0004288:9484-9503 | None:intergenic | 40.0% |
| TCTGCTATGAGAAATTGGCT+AGG | + | tig0004288:9556-9575 | Msa1340620:CDS | 40.0% | |
| CCTGCCAACATAAATGGATA+AGG | - | tig0004288:9732-9751 | None:intergenic | 40.0% | |
| CCTTATCCATTTATGTTGGC+AGG | + | tig0004288:9729-9748 | Msa1340620:intron | 40.0% | |
| ATCATTGTTACCAACACCAG+TGG | + | tig0004288:9834-9853 | Msa1340620:CDS | 40.0% | |
| ATATTGGGCTTATGGGTCAA+TGG | + | tig0004288:10239-10258 | Msa1340620:CDS | 40.0% | |
| ! | CTAGGTCCACTTAAGTTTTC+AGG | - | tig0004288:10279-10298 | None:intergenic | 40.0% |
| ATGAGCACATTGATCCATCT+AGG | - | tig0004288:10297-10316 | None:intergenic | 40.0% | |
| GTTTGTGGTACCAATTCATG+AGG | + | tig0004288:10623-10642 | Msa1340620:CDS | 40.0% | |
| ! | TGCTGCAGCATTTCCTTTTA+TGG | + | tig0004288:10752-10771 | Msa1340620:CDS | 40.0% |
| ! | GCTGCAGCATTTCCTTTTAT+GGG | + | tig0004288:10753-10772 | Msa1340620:CDS | 40.0% |
| ! | GGTGACTTCGTAAACTTGTT+AGG | + | tig0004288:10774-10793 | Msa1340620:CDS | 40.0% |
| AACAGCTAGAACAGAGAAGA+AGG | + | tig0004288:10863-10882 | Msa1340620:CDS | 40.0% | |
| CAACCACAATTTCAGCTCTT+CGG | + | tig0004288:10931-10950 | Msa1340620:CDS | 40.0% | |
| TCTTTGCCGATGTATGATTG+TGG | + | tig0004288:10985-11004 | Msa1340620:exon | 40.0% | |
| AAGGTTGGAGCACACTAAAG+TGG | - | tig0004288:8083-8102 | None:intergenic | 45.0% | |
| TGCAGATTCATGGCAACAAG+TGG | + | tig0004288:8441-8460 | Msa1340620:intron | 45.0% | |
| GCAGATTCATGGCAACAAGT+GGG | + | tig0004288:8442-8461 | Msa1340620:intron | 45.0% | |
| CAGATTCATGGCAACAAGTG+GGG | + | tig0004288:8443-8462 | Msa1340620:intron | 45.0% | |
| ! | TTGGTAACAGGCTTCAACTG+CGG | + | tig0004288:8472-8491 | Msa1340620:CDS | 45.0% |
| GACCGTAAACAAATCCCATG+AGG | - | tig0004288:8654-8673 | None:intergenic | 45.0% | |
| GACCCTTCTTCTTGGAAACA+TGG | + | tig0004288:9317-9336 | Msa1340620:CDS | 45.0% | |
| AACATGGGTTTCATCCTCCT+TGG | + | tig0004288:9333-9352 | Msa1340620:CDS | 45.0% | |
| GTCAGTGTTGCAGTCAAAGA+TGG | + | tig0004288:9619-9638 | Msa1340620:CDS | 45.0% | |
| TTCCTCATGTTCTTCACTGC+TGG | - | tig0004288:10159-10178 | None:intergenic | 45.0% | |
| GGACACAACACAACACGTAT+CGG | - | tig0004288:10409-10428 | None:intergenic | 45.0% | |
| !!! | GTCCGTCCTCATTTTTTGAG+TGG | + | tig0004288:10511-10530 | Msa1340620:intron | 45.0% |
| GGTACCAATTCATGAGGCTT+TGG | + | tig0004288:10629-10648 | Msa1340620:CDS | 45.0% | |
| GTGTCCAAAGCCTCATGAAT+TGG | - | tig0004288:10636-10655 | None:intergenic | 45.0% | |
| ! | ATTGGCAAGGGTATGCATTC+AGG | + | tig0004288:10669-10688 | Msa1340620:CDS | 45.0% |
| ! | TTGGCAAGGGTATGCATTCA+GGG | + | tig0004288:10670-10689 | Msa1340620:CDS | 45.0% |
| GATCATGCTTGGGAACATGA+AGG | - | tig0004288:10823-10842 | None:intergenic | 45.0% | |
| CTAGAACAGAGAAGAAGGTG+TGG | + | tig0004288:10868-10887 | Msa1340620:CDS | 45.0% | |
| GAACCGAAGAGCTGAAATTG+TGG | - | tig0004288:10937-10956 | None:intergenic | 45.0% | |
| TGCTCTACCTTCAACCTCCA+TGG | - | tig0004288:8168-8187 | None:intergenic | 50.0% | |
| !! | GCAACAAGTGGGGTTGATGT+TGG | + | tig0004288:8453-8472 | Msa1340620:CDS | 50.0% |
| !! | GTGGGGTTGATGTTGGTAAC+AGG | + | tig0004288:8460-8479 | Msa1340620:CDS | 50.0% |
| TAACAGGCTTCAACTGCGGT+TGG | + | tig0004288:8476-8495 | Msa1340620:CDS | 50.0% | |
| !! | TGGTTCCATTGGGTTGGACA+TGG | + | tig0004288:8524-8543 | Msa1340620:CDS | 50.0% |
| !! | GGTTCCATTGGGTTGGACAT+GGG | + | tig0004288:8525-8544 | Msa1340620:CDS | 50.0% |
| !! | GTTCCATTGGGTTGGACATG+GGG | + | tig0004288:8526-8545 | Msa1340620:CDS | 50.0% |
| ATACCCCATGTCCAACCCAA+TGG | - | tig0004288:8532-8551 | None:intergenic | 50.0% | |
| ATGGGTTTCATCCTCCTTGG+AGG | + | tig0004288:9336-9355 | Msa1340620:CDS | 50.0% | |
| TTTCATCCTCCTTGGAGGCA+AGG | + | tig0004288:9341-9360 | Msa1340620:CDS | 50.0% | |
| ! | TATCTCAGGAAGCATGCCAC+TGG | - | tig0004288:9853-9872 | None:intergenic | 50.0% |
| TGGCATGCTTCCTGAGATAC+AGG | + | tig0004288:9854-9873 | Msa1340620:CDS | 50.0% | |
| AGCCAGCAGTGAAGAACATG+AGG | + | tig0004288:10154-10173 | Msa1340620:CDS | 50.0% | |
| ! | TGGCAAGGGTATGCATTCAG+GGG | + | tig0004288:10671-10690 | Msa1340620:CDS | 50.0% |
| CTTGGGAACATGAAGGTGAG+AGG | - | tig0004288:10816-10835 | None:intergenic | 50.0% | |
| ! | CAGAGAAGAAGGTGTGGCAT+TGG | + | tig0004288:10874-10893 | Msa1340620:CDS | 50.0% |
| ATTTGCACCCGTGCAATGCA+CGG | + | tig0004288:11234-11253 | Msa1340620:three_prime_UTR | 50.0% | |
| TAAGTGCCTTGCCTCCAAGG+AGG | - | tig0004288:9350-9369 | None:intergenic | 55.0% | |
| CCTTAAGTGCCTTGCCTCCA+AGG | - | tig0004288:9353-9372 | None:intergenic | 55.0% | |
| ! | CCTTGGAGGCAAGGCACTTA+AGG | + | tig0004288:9350-9369 | Msa1340620:CDS | 55.0% |
| ! | AGGAAGCATGCCACTGGTGT+TGG | - | tig0004288:9847-9866 | None:intergenic | 55.0% |
| !! | CACTGCTGGCTTACGTAGAG+TGG | - | tig0004288:10145-10164 | None:intergenic | 55.0% |
| TAGACACGACACGGACACGT+CGG | - | tig0004288:10489-10508 | None:intergenic | 55.0% | |
| GACGGACACTAGACACGACA+CGG | - | tig0004288:10498-10517 | None:intergenic | 55.0% | |
| TTTGCACCCGTGCAATGCAC+GGG | + | tig0004288:11235-11254 | Msa1340620:three_prime_UTR | 55.0% | |
| TTGCACCCGTGCAATGCACG+GGG | + | tig0004288:11236-11255 | Msa1340620:three_prime_UTR | 60.0% | |
| TTCTCCCCCCGTGCATTGCA+CGG | - | tig0004288:11245-11264 | None:intergenic | 60.0% | |
| TGCACCCGTGCAATGCACGG+GGG | + | tig0004288:11237-11256 | Msa1340620:three_prime_UTR | 65.0% | |
| TCTCCCCCCGTGCATTGCAC+GGG | - | tig0004288:11244-11263 | None:intergenic | 65.0% | |
| GCACCCGTGCAATGCACGGG+GGG | + | tig0004288:11238-11257 | Msa1340620:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004288 | gene | 7884 | 11277 | 7884 | ID=Msa1340620;Name=Msa1340620 |
| tig0004288 | mRNA | 7884 | 11277 | 7884 | ID=Msa1340620-mRNA-1;Parent=Msa1340620;Name=Msa1340620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=283|1|1|1|1|1|7|276|450 |
| tig0004288 | exon | 7884 | 8290 | 7884 | ID=Msa1340620-mRNA-1:exon:2773;Parent=Msa1340620-mRNA-1 |
| tig0004288 | exon | 8446 | 8670 | 8446 | ID=Msa1340620-mRNA-1:exon:2774;Parent=Msa1340620-mRNA-1 |
| tig0004288 | exon | 9277 | 9371 | 9277 | ID=Msa1340620-mRNA-1:exon:2775;Parent=Msa1340620-mRNA-1 |
| tig0004288 | exon | 9454 | 9640 | 9454 | ID=Msa1340620-mRNA-1:exon:2776;Parent=Msa1340620-mRNA-1 |
| tig0004288 | exon | 9751 | 9875 | 9751 | ID=Msa1340620-mRNA-1:exon:2777;Parent=Msa1340620-mRNA-1 |
| tig0004288 | exon | 10141 | 10356 | 10141 | ID=Msa1340620-mRNA-1:exon:2778;Parent=Msa1340620-mRNA-1 |
| tig0004288 | exon | 10621 | 11277 | 10621 | ID=Msa1340620-mRNA-1:exon:2779;Parent=Msa1340620-mRNA-1 |
| tig0004288 | five_prime_UTR | 7884 | 8166 | 7884 | ID=Msa1340620-mRNA-1:five_prime_utr;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 8167 | 8290 | 8167 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 8446 | 8670 | 8446 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 9277 | 9371 | 9277 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 9454 | 9640 | 9454 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 9751 | 9875 | 9751 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 10141 | 10356 | 10141 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | CDS | 10621 | 11001 | 10621 | ID=Msa1340620-mRNA-1:cds;Parent=Msa1340620-mRNA-1 |
| tig0004288 | three_prime_UTR | 11002 | 11277 | 11002 | ID=Msa1340620-mRNA-1:three_prime_utr;Parent=Msa1340620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
