Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1096950 | XP_003621623.1 | 99.413 | 341 | 2 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1096950 | sp|Q8VZ20|ASR3_ARATH | 48.295 | 352 | 133 | 9 | 1 | 341 | 1 | 314 | 4.60e-95 | 288 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1096950 | G7KSV7 | 99.413 | 341 | 2 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
Gene ID | Type | Classification |
---|---|---|
Msa1096950 | TF | Trihelix |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001830 | Msa1096950 | 0.825674 | 4.120634e-54 | -8.615850e-47 |
Msa0015090 | Msa1096950 | 0.804711 | 1.895133e-49 | -8.615850e-47 |
Msa0020390 | Msa1096950 | 0.805589 | 1.240855e-49 | -8.615850e-47 |
Msa0115190 | Msa1096950 | 0.804867 | 1.758009e-49 | -8.615850e-47 |
Msa0118540 | Msa1096950 | 0.823145 | 1.621287e-53 | -8.615850e-47 |
Msa0604290 | Msa1096950 | 0.843654 | 1.226573e-58 | -8.615850e-47 |
Msa0613420 | Msa1096950 | 0.803378 | 3.588012e-49 | -8.615850e-47 |
Msa0641130 | Msa1096950 | 0.811860 | 5.667227e-51 | -8.615850e-47 |
Msa0746210 | Msa1096950 | 0.807327 | 5.335994e-50 | -8.615850e-47 |
Msa0750850 | Msa1096950 | 0.803795 | 2.939604e-49 | -8.615850e-47 |
Msa0769970 | Msa1096950 | 0.800996 | 1.108666e-48 | -8.615850e-47 |
Msa0788540 | Msa1096950 | 0.800665 | 1.295674e-48 | -8.615850e-47 |
Msa0802240 | Msa1096950 | 0.811635 | 6.342180e-51 | -8.615850e-47 |
Msa0138020 | Msa1096950 | 0.814270 | 1.677756e-51 | -8.615850e-47 |
Msa0189030 | Msa1096950 | 0.816378 | 5.703184e-52 | -8.615850e-47 |
Msa0196670 | Msa1096950 | 0.809274 | 2.051657e-50 | -8.615850e-47 |
Msa0388730 | Msa1096950 | 0.840222 | 9.900468e-58 | -8.615850e-47 |
Msa0389210 | Msa1096950 | 0.800990 | 1.111956e-48 | -8.615850e-47 |
Msa0994370 | Msa1096950 | 0.809764 | 1.610592e-50 | -8.615850e-47 |
Msa1023310 | Msa1096950 | 0.828528 | 8.553523e-55 | -8.615850e-47 |
Msa1029050 | Msa1096950 | 0.822296 | 2.555163e-53 | -8.615850e-47 |
Msa1051850 | Msa1096950 | 0.924174 | 1.001368e-89 | -8.615850e-47 |
Msa1062040 | Msa1096950 | 0.850547 | 1.582832e-60 | -8.615850e-47 |
Msa1071320 | Msa1096950 | 0.814351 | 1.610340e-51 | -8.615850e-47 |
Msa1081790 | Msa1096950 | -0.843280 | 1.543836e-58 | -8.615850e-47 |
Msa1089460 | Msa1096950 | 0.803466 | 3.438908e-49 | -8.615850e-47 |
Msa1096950 | Msa1107200 | 0.862074 | 6.555237e-64 | -8.615850e-47 |
Msa1096950 | Msa1127080 | -0.806090 | 9.740249e-50 | -8.615850e-47 |
Msa1096950 | Msa1133230 | 0.804466 | 2.131791e-49 | -8.615850e-47 |
Msa1096950 | Msa1140230 | 0.863671 | 2.107044e-64 | -8.615850e-47 |
Msa1096950 | Msa1150780 | 0.852434 | 4.628909e-61 | -8.615850e-47 |
Msa1096950 | Msa1166090 | -0.860211 | 2.418998e-63 | -8.615850e-47 |
Msa1096950 | Msa1176720 | 0.819318 | 1.237099e-52 | -8.615850e-47 |
Msa1096950 | Msa1206270 | 0.804118 | 2.518484e-49 | -8.615850e-47 |
Msa1096950 | Msa1207310 | 0.818240 | 2.173033e-52 | -8.615850e-47 |
Msa1096950 | Msa1208380 | 0.830626 | 2.641850e-55 | -8.615850e-47 |
Msa1096950 | Msa1218580 | 0.803421 | 3.514031e-49 | -8.615850e-47 |
Msa1096950 | Msa1231840 | 0.832638 | 8.433897e-56 | -8.615850e-47 |
Msa1096950 | Msa1280340 | 0.826143 | 3.189713e-54 | -8.615850e-47 |
Msa1096950 | Msa1307180 | 0.800517 | 1.389090e-48 | -8.615850e-47 |
Msa1096950 | Msa1316360 | 0.825079 | 5.701089e-54 | -8.615850e-47 |
Msa1096950 | Msa1355890 | 0.815382 | 9.515063e-52 | -8.615850e-47 |
Msa1096950 | Msa1396400 | -0.864015 | 1.647120e-64 | -8.615850e-47 |
Msa1096950 | Msa1401990 | 0.800974 | 1.120556e-48 | -8.615850e-47 |
Msa1096950 | Msa1407760 | 0.819676 | 1.024789e-52 | -8.615850e-47 |
Msa1096950 | Msa1430130 | 0.802479 | 5.503190e-49 | -8.615850e-47 |
Msa1096950 | Msa1437730 | 0.818311 | 2.094411e-52 | -8.615850e-47 |
Msa1096950 | Msa1438840 | 0.806495 | 8.000606e-50 | -8.615850e-47 |
Msa1096950 | Msa1460750 | 0.802249 | 6.135630e-49 | -8.615850e-47 |
Msa0272450 | Msa1096950 | 0.800100 | 1.688353e-48 | -8.615850e-47 |
Msa0276100 | Msa1096950 | 0.805530 | 1.277007e-49 | -8.615850e-47 |
Msa0278580 | Msa1096950 | 0.802029 | 6.809363e-49 | -8.615850e-47 |
Msa0309270 | Msa1096950 | 0.809060 | 2.280681e-50 | -8.615850e-47 |
Msa0358860 | Msa1096950 | 0.827265 | 1.721241e-54 | -8.615850e-47 |
Msa0484640 | Msa1096950 | 0.801290 | 9.655617e-49 | -8.615850e-47 |
Msa0542560 | Msa1096950 | 0.838318 | 3.088121e-57 | -8.615850e-47 |
Msa0544840 | Msa1096950 | 0.810993 | 8.744616e-51 | -8.615850e-47 |
Msa0545050 | Msa1096950 | 0.821023 | 5.032434e-53 | -8.615850e-47 |
Msa0588260 | Msa1096950 | 0.815459 | 9.143846e-52 | -8.615850e-47 |
Msa0600590 | Msa1096950 | 0.827528 | 1.488748e-54 | -8.615850e-47 |
Msa0861470 | Msa1096950 | 0.807755 | 4.328430e-50 | -8.615850e-47 |
Msa0861570 | Msa1096950 | 0.812119 | 4.977629e-51 | -8.615850e-47 |
Msa0880810 | Msa1096950 | 0.805735 | 1.156176e-49 | -8.615850e-47 |
Msa0888260 | Msa1096950 | 0.815014 | 1.148525e-51 | -8.615850e-47 |
Msa0944020 | Msa1096950 | 0.812988 | 3.212755e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1096950 | MtrunA17_Chr7g0221451 | 99.123 | 342 | 2 | 1 | 1 | 341 | 1 | 342 | 0.0 | 692 |
Msa1096950 | MtrunA17_Chr1g0211061 | 67.147 | 347 | 77 | 9 | 1 | 341 | 1 | 316 | 5.38e-139 | 397 |
Msa1096950 | MtrunA17_Chr8g0385751 | 36.232 | 345 | 155 | 12 | 36 | 341 | 43 | 361 | 7.73e-56 | 186 |
Msa1096950 | MtrunA17_Chr1g0199044 | 29.730 | 148 | 64 | 5 | 41 | 148 | 56 | 203 | 9.79e-12 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1096950 | AT2G33550.1 | 48.295 | 352 | 133 | 9 | 1 | 341 | 1 | 314 | 4.68e-96 | 288 |
Msa1096950 | AT4G31270.1 | 33.913 | 115 | 70 | 1 | 39 | 153 | 17 | 125 | 8.38e-17 | 80.1 |
Msa1096950 | AT2G35640.1 | 34.711 | 121 | 62 | 5 | 41 | 148 | 22 | 138 | 2.53e-12 | 67.4 |
Find 138 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTAATTTCATTCACTTTA+TGG | 0.011354 | 7_3:+22016096 | Msa1096950:exon |
TGAGATGTAGAGCCCGTTTC+TGG | 0.174990 | 7_3:-22019553 | None:intergenic |
ACAGTTCCATCATCGGAATT+AGG | 0.177565 | 7_3:-22016136 | None:intergenic |
CCTTCACCTGTTCCTATATC+AGG | 0.202031 | 7_3:+22016769 | Msa1096950:CDS |
TAAACTGTTACTGCCATTAT+AGG | 0.215864 | 7_3:+22019919 | Msa1096950:three_prime_UTR |
TCCGATGATGGAACTGTTAA+TGG | 0.216509 | 7_3:+22016142 | Msa1096950:CDS |
GCCATAAAGTGAATGAAATT+AGG | 0.217948 | 7_3:-22016097 | None:intergenic |
TTGGACTAGGCAGGAGATTT+TGG | 0.244674 | 7_3:+22016234 | Msa1096950:CDS |
GATAAAGGAGTGGGAGAGTC+AGG | 0.272993 | 7_3:+22016438 | Msa1096950:CDS |
AAACCGGGTCGGAATGGGTC+TGG | 0.281955 | 7_3:+22016295 | Msa1096950:CDS |
CAGTTCCATCATCGGAATTA+GGG | 0.288650 | 7_3:-22016135 | None:intergenic |
TTCATATTTATGATAGTAAT+AGG | 0.301580 | 7_3:+22016668 | Msa1096950:CDS |
GGCTGGTTGTTTCTCATTGT+TGG | 0.301660 | 7_3:-22019524 | None:intergenic |
TTTCATTCACTTTATGGCTT+TGG | 0.307015 | 7_3:+22016102 | Msa1096950:exon |
CCATAAAGTGAATGAAATTA+GGG | 0.326616 | 7_3:-22016096 | None:intergenic |
GGTCGGAATGGGTCTGGGTT+TGG | 0.340314 | 7_3:+22016301 | Msa1096950:CDS |
GAATGTGTCGGTGTCGGTTT+CGG | 0.345627 | 7_3:+22016621 | Msa1096950:CDS |
CTCTTCATTGCCGTCTCCAT+TGG | 0.349024 | 7_3:-22019605 | None:intergenic |
TTCCTTCTCCTTGGCAGCCT+CGG | 0.354622 | 7_3:-22017519 | None:intergenic |
CAAAATAACCAACCTGATAT+AGG | 0.358309 | 7_3:-22016781 | None:intergenic |
AAGGAGATTAATAGAGAAAA+GGG | 0.361069 | 7_3:-22015935 | None:intergenic |
GGCAGCATCGGTTGTTGTTC+CGG | 0.362479 | 7_3:+22016597 | Msa1096950:CDS |
TCCATCCTCGCCACCGTTCA+CGG | 0.362719 | 7_3:-22016188 | None:intergenic |
TCTTTCTAAAACGCCGTTAA+CGG | 0.366762 | 7_3:+22016015 | Msa1096950:five_prime_UTR |
TGTGACGGTGCCTCCGTTAA+CGG | 0.374926 | 7_3:-22016028 | None:intergenic |
TTAGGACTATATACAACCTT+TGG | 0.376946 | 7_3:+22019944 | Msa1096950:three_prime_UTR |
GAAGGAGATTAATAGAGAAA+AGG | 0.377518 | 7_3:-22015936 | None:intergenic |
GGCTGCAGCTGTGGCAGCAT+CGG | 0.381376 | 7_3:+22016585 | Msa1096950:CDS |
CATTCCGACCCGGTTTGAAC+CGG | 0.381786 | 7_3:-22016288 | None:intergenic |
GAAGAAACCAACGCCCATTT+CGG | 0.382737 | 7_3:-22016334 | None:intergenic |
GAGATGAAACGGAGTCGTTT+TGG | 0.385379 | 7_3:+22016464 | Msa1096950:CDS |
TATAGTCCTAAGTCCTATAA+TGG | 0.392928 | 7_3:-22019932 | None:intergenic |
TTGCAGTTTCATTCTGCTGC+TGG | 0.394241 | 7_3:-22019729 | None:intergenic |
CCCGTTTCTGGATTCGAGGC+TGG | 0.399420 | 7_3:-22019541 | None:intergenic |
GTAAGAAACACGGTGTGAAC+CGG | 0.402207 | 7_3:+22016362 | Msa1096950:CDS |
TAGTCAATTAATTGATGTAT+TGG | 0.403614 | 7_3:+22019642 | Msa1096950:CDS |
AACCGGGTCGGAATGGGTCT+GGG | 0.403971 | 7_3:+22016296 | Msa1096950:CDS |
TTGGTTCGAGTGAACCGAAA+TGG | 0.407548 | 7_3:+22016320 | Msa1096950:CDS |
CCATCATCGGAATTAGGGTT+TGG | 0.414944 | 7_3:-22016130 | None:intergenic |
TGCTGAAAGCCGGTTCAAAC+CGG | 0.422601 | 7_3:+22016279 | Msa1096950:CDS |
GATGCTAAGTGAACAATTAG+AGG | 0.427523 | 7_3:+22019678 | Msa1096950:CDS |
CGGAGATTATAAGAAGATAA+AGG | 0.430532 | 7_3:+22016423 | Msa1096950:CDS |
CTTGAGCATTTCCTTCTCCT+TGG | 0.433995 | 7_3:-22017528 | None:intergenic |
CTTTATCTTCTTATAATCTC+CGG | 0.440339 | 7_3:-22016422 | None:intergenic |
TAGGACTATATACAACCTTT+GGG | 0.442804 | 7_3:+22019945 | Msa1096950:three_prime_UTR |
GATAAGCTTGCAAATGCTCT+TGG | 0.446812 | 7_3:+22019772 | Msa1096950:CDS |
GTAGTAGTGTACATACCATT+TGG | 0.449657 | 7_3:+22019833 | Msa1096950:three_prime_UTR |
GCCGTCGATGGCGGTGGCAG+CGG | 0.449844 | 7_3:+22016564 | Msa1096950:CDS |
GTCGGTGTCGGTTTCGGAGA+CGG | 0.458922 | 7_3:+22016627 | Msa1096950:CDS |
AGGAAAGTGAGTGGTGAGGA+TGG | 0.468097 | 7_3:+22016688 | Msa1096950:CDS |
CATCTCAAGGGGAACGTAAG+AGG | 0.469277 | 7_3:+22019569 | Msa1096950:CDS |
CGGTTCAAACCGGGTCGGAA+TGG | 0.469834 | 7_3:+22016289 | Msa1096950:CDS |
TCGGTTTCGGAGACGGTTGG+AGG | 0.471862 | 7_3:+22016634 | Msa1096950:CDS |
GGTTCAAACCGGGTCGGAAT+GGG | 0.472434 | 7_3:+22016290 | Msa1096950:CDS |
GGAGACGGTTGGAGGGGATG+AGG | 0.473755 | 7_3:+22016642 | Msa1096950:CDS |
GCCGCTGCCACCGCCATCGA+CGG | 0.475194 | 7_3:-22016565 | None:intergenic |
CCAAACCCTAATTCCGATGA+TGG | 0.478565 | 7_3:+22016130 | Msa1096950:CDS |
TGGTTCGAGTGAACCGAAAT+GGG | 0.480374 | 7_3:+22016321 | Msa1096950:CDS |
AACCAACCTGATATAGGAAC+AGG | 0.482028 | 7_3:-22016775 | None:intergenic |
CCACTACTGTAGACTCCAAA+TGG | 0.486433 | 7_3:-22019848 | None:intergenic |
ACCAGCCTCGAATCCAGAAA+CGG | 0.487810 | 7_3:+22019540 | Msa1096950:CDS |
CACCGCTTCCTACACTGAAT+CGG | 0.488900 | 7_3:-22016388 | None:intergenic |
GCCGTGAACGGTGGCGAGGA+TGG | 0.493423 | 7_3:+22016187 | Msa1096950:CDS |
GGTGGCAGCGGCTGCAGCTG+TGG | 0.495633 | 7_3:+22016576 | Msa1096950:CDS |
CTCGCCACCGTTCACGGCGG+AGG | 0.497849 | 7_3:-22016182 | None:intergenic |
TCCGGTGAATGTGTCGGTGT+CGG | 0.501303 | 7_3:+22016615 | Msa1096950:CDS |
TAAGAAACACGGTGTGAACC+GGG | 0.505202 | 7_3:+22016363 | Msa1096950:CDS |
GGAATGATTTGAGGAGAGAG+AGG | 0.508729 | 7_3:+22016494 | Msa1096950:CDS |
GAGTCAGGTGAGAGATGAAA+CGG | 0.509162 | 7_3:+22016453 | Msa1096950:CDS |
CCACTCCTCCGAGGCTGCCA+AGG | 0.511072 | 7_3:+22017511 | Msa1096950:CDS |
ACCATTAACAGTTCCATCAT+CGG | 0.512575 | 7_3:-22016143 | None:intergenic |
CGAGGTTGCCACGTTGGACT+AGG | 0.514126 | 7_3:+22016221 | Msa1096950:CDS |
GGTTGATGAGGAATGATTTG+AGG | 0.515241 | 7_3:+22016485 | Msa1096950:CDS |
CCAGCCTCGAATCCAGAAAC+GGG | 0.515344 | 7_3:+22019541 | Msa1096950:CDS |
GTGTCGGTTTCGGAGACGGT+TGG | 0.520719 | 7_3:+22016631 | Msa1096950:CDS |
CTCCGAGGCTGCCAAGGAGA+AGG | 0.523413 | 7_3:+22017517 | Msa1096950:CDS |
CGGTTTCGGAGACGGTTGGA+GGG | 0.523976 | 7_3:+22016635 | Msa1096950:CDS |
TGATTCGCCGTCGATGGCGG+TGG | 0.527873 | 7_3:+22016558 | Msa1096950:CDS |
AGGAGAGAGAGGAAATTGCC+TGG | 0.529803 | 7_3:+22016505 | Msa1096950:CDS |
AGAGCCCGTTTCTGGATTCG+AGG | 0.531658 | 7_3:-22019545 | None:intergenic |
ACCGACACCGACACATTCAC+CGG | 0.534766 | 7_3:-22016616 | None:intergenic |
GATACTTGATTCGCCGTCGA+TGG | 0.535395 | 7_3:+22016552 | Msa1096950:CDS |
TTATAAGAAGATAAAGGAGT+GGG | 0.535976 | 7_3:+22016429 | Msa1096950:CDS |
TTACTGCCATTATAGGACTT+AGG | 0.536809 | 7_3:+22019926 | Msa1096950:three_prime_UTR |
GAGGCACCGTCACAAAATAG+TGG | 0.542593 | 7_3:+22016037 | Msa1096950:five_prime_UTR |
GAAACGGGCTCTACATCTCA+AGG | 0.544821 | 7_3:+22019556 | Msa1096950:CDS |
GTTGCCACGTTGGACTAGGC+AGG | 0.544915 | 7_3:+22016225 | Msa1096950:CDS |
CCACCGTTCACGGCGGAGGA+CGG | 0.551882 | 7_3:-22016178 | None:intergenic |
CTTCTCCTTGGCAGCCTCGG+AGG | 0.552038 | 7_3:-22017516 | None:intergenic |
ATTATAAGAAGATAAAGGAG+TGG | 0.554162 | 7_3:+22016428 | Msa1096950:CDS |
AAGGGGAACGTAAGAGGAAG+CGG | 0.555390 | 7_3:+22019575 | Msa1096950:CDS |
CCATTTGGAGTCTACAGTAG+TGG | 0.558992 | 7_3:+22019848 | Msa1096950:three_prime_UTR |
GGTTTCGGAGACGGTTGGAG+GGG | 0.562864 | 7_3:+22016636 | Msa1096950:CDS |
GGAAGAGTGATGCTGAAAGC+CGG | 0.563160 | 7_3:+22016269 | Msa1096950:CDS |
CCGTCCTCCGCCGTGAACGG+TGG | 0.563465 | 7_3:+22016178 | Msa1096950:CDS |
AACCCAGACCCATTCCGACC+CGG | 0.563556 | 7_3:-22016298 | None:intergenic |
TCCTACACTGAATCGGACCC+CGG | 0.566040 | 7_3:-22016381 | None:intergenic |
GACGGTTGGAGGGGATGAGG+AGG | 0.566380 | 7_3:+22016645 | Msa1096950:CDS |
AGGAAGCGGTTCGCAACCAA+TGG | 0.566583 | 7_3:+22019589 | Msa1096950:CDS |
TTCTAAAACGCCGTTAACGG+AGG | 0.566780 | 7_3:+22016018 | Msa1096950:five_prime_UTR |
CAACGGCGAGGTTGCCACGT+TGG | 0.567709 | 7_3:+22016215 | Msa1096950:CDS |
CCACCGTCCTCCGCCGTGAA+CGG | 0.574662 | 7_3:+22016175 | Msa1096950:CDS |
CAACGTGGCAACCTCGCCGT+TGG | 0.578833 | 7_3:-22016214 | None:intergenic |
CGATTCAGTGTAGGAAGCGG+TGG | 0.579523 | 7_3:+22016389 | Msa1096950:CDS |
GCTGAAAGCCGGTTCAAACC+GGG | 0.579950 | 7_3:+22016280 | Msa1096950:CDS |
GAGTGAACCGAAATGGGCGT+TGG | 0.586856 | 7_3:+22016327 | Msa1096950:CDS |
CTCCGCCGTGAACGGTGGCG+AGG | 0.588326 | 7_3:+22016183 | Msa1096950:CDS |
GATGGAACTGTTAATGGTAA+CGG | 0.590361 | 7_3:+22016148 | Msa1096950:CDS |
GTCCGATTCAGTGTAGGAAG+CGG | 0.593847 | 7_3:+22016386 | Msa1096950:CDS |
TGATAAGCTGTAGTGCAAGA+AGG | 0.594772 | 7_3:+22019804 | Msa1096950:exon |
AAGCGGTGGAGCAACCTCGC+CGG | 0.597218 | 7_3:+22016403 | Msa1096950:CDS |
CAATGGAGACGGCAATGAAG+AGG | 0.604269 | 7_3:+22019606 | Msa1096950:CDS |
GGAAAGTGAGTGGTGAGGAT+GGG | 0.605368 | 7_3:+22016689 | Msa1096950:CDS |
TGTTGTTCCGGTGAATGTGT+CGG | 0.606938 | 7_3:+22016609 | Msa1096950:CDS |
CATTTGGAGTCTACAGTAGT+GGG | 0.611155 | 7_3:+22019849 | Msa1096950:three_prime_UTR |
TAATAGGAAAGTGAGTGGTG+AGG | 0.611943 | 7_3:+22016684 | Msa1096950:CDS |
GGAGAGAGAGGAAATTGCCT+GGG | 0.612198 | 7_3:+22016506 | Msa1096950:CDS |
ACTTGATTCGCCGTCGATGG+CGG | 0.613112 | 7_3:+22016555 | Msa1096950:CDS |
CGGTTCGCAACCAATGGAGA+CGG | 0.613454 | 7_3:+22019595 | Msa1096950:CDS |
CCGTTCACGGCGGAGGACGG+TGG | 0.619410 | 7_3:-22016175 | None:intergenic |
AAACGGGCTCTACATCTCAA+GGG | 0.623139 | 7_3:+22019557 | Msa1096950:CDS |
CAAGGAGAAGGAAATGCTCA+AGG | 0.623679 | 7_3:+22017529 | Msa1096950:CDS |
CCTGATATAGGAACAGGTGA+AGG | 0.639915 | 7_3:-22016769 | None:intergenic |
AACGGGCTCTACATCTCAAG+GGG | 0.641332 | 7_3:+22019558 | Msa1096950:CDS |
ATAAATGCAGTAACTCCCAA+AGG | 0.641377 | 7_3:-22019960 | None:intergenic |
TGGAGACGGCAATGAAGAGG+AGG | 0.641529 | 7_3:+22019609 | Msa1096950:CDS |
GATAGTAATAGGAAAGTGAG+TGG | 0.654357 | 7_3:+22016679 | Msa1096950:CDS |
ACCTCCTTATCAAAATACCC+AGG | 0.654771 | 7_3:-22016523 | None:intergenic |
TGGCGAGGATGGAAAACCAA+CGG | 0.670801 | 7_3:+22016198 | Msa1096950:CDS |
TCTTCTTATAATCTCCGGCG+AGG | 0.675112 | 7_3:-22016417 | None:intergenic |
ACCGGGGTCCGATTCAGTGT+AGG | 0.687179 | 7_3:+22016380 | Msa1096950:CDS |
TCTTCGTACTGTAAGAAACA+CGG | 0.696059 | 7_3:+22016352 | Msa1096950:CDS |
AAGAAACACGGTGTGAACCG+GGG | 0.696776 | 7_3:+22016364 | Msa1096950:CDS |
AAAGCCGGTTCAAACCGGGT+CGG | 0.703772 | 7_3:+22016284 | Msa1096950:CDS |
ATCTCCTGCCTAGTCCAACG+TGG | 0.717269 | 7_3:-22016229 | None:intergenic |
CAGTTTCTACCACTCCTCCG+AGG | 0.732051 | 7_3:+22017502 | Msa1096950:CDS |
ATCCTCGCCACCGTTCACGG+CGG | 0.733386 | 7_3:-22016185 | None:intergenic |
AGGATGGAAAACCAACGGCG+AGG | 0.747104 | 7_3:+22016203 | Msa1096950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTTAATAATACTAAAAATA+AGG | - | chr7_3:22019904-22019923 | None:intergenic | 10.0% |
!! | AGAATGAAAAAGAAAAAAAA+GGG | - | chr7_3:22015998-22016017 | None:intergenic | 15.0% |
!! | AAGAATGAAAAAGAAAAAAA+AGG | - | chr7_3:22015999-22016018 | None:intergenic | 15.0% |
!! | TTCATATTTATGATAGTAAT+AGG | + | chr7_3:22016668-22016687 | Msa1096950:CDS | 15.0% |
!!! | TTTTAGATTGAAATTGTTTT+CGG | + | chr7_3:22016882-22016901 | Msa1096950:intron | 15.0% |
!! | ATTTAAATAATTACAGCTAT+TGG | + | chr7_3:22016992-22017011 | Msa1096950:intron | 15.0% |
!! | TTTAAATAATTACAGCTATT+GGG | + | chr7_3:22016993-22017012 | Msa1096950:intron | 15.0% |
!! | TATATAATAGTGTTAATTAC+AGG | + | chr7_3:22017202-22017221 | Msa1096950:intron | 15.0% |
!! | GATTTCAATCATTAAATTTA+TGG | - | chr7_3:22017901-22017920 | None:intergenic | 15.0% |
!! | AAATTTAATGATTGAAATCA+TGG | + | chr7_3:22017902-22017921 | Msa1096950:intron | 15.0% |
!! | GAATTAACAAAATTTCAAAA+TGG | + | chr7_3:22018876-22018895 | Msa1096950:intron | 15.0% |
!!! | TTTTTTCTTCTTAAGAATGA+AGG | - | chr7_3:22015957-22015976 | None:intergenic | 20.0% |
!! | ATAAGCTTATACAATCAAAA+AGG | - | chr7_3:22016826-22016845 | None:intergenic | 20.0% |
!!! | TTTAGATTGAAATTGTTTTC+GGG | + | chr7_3:22016883-22016902 | Msa1096950:intron | 20.0% |
!! | TTAAATAATTACAGCTATTG+GGG | + | chr7_3:22016994-22017013 | Msa1096950:intron | 20.0% |
!!! | TCATTTTTTTGAATAATCAC+AGG | + | chr7_3:22017085-22017104 | Msa1096950:intron | 20.0% |
!! | AATAAAAAAACAGTACAGTA+TGG | - | chr7_3:22017342-22017361 | None:intergenic | 20.0% |
!!! | AGTGTTTTATGTTTTAAAGT+TGG | + | chr7_3:22017377-22017396 | Msa1096950:intron | 20.0% |
!!! | TTTTATGTTTTAAAGTTGGA+GGG | + | chr7_3:22017381-22017400 | Msa1096950:intron | 20.0% |
!!! | GTTTTAATACTAGAATGATA+TGG | + | chr7_3:22017600-22017619 | Msa1096950:intron | 20.0% |
!! | GATAAATATATGATTTACCA+CGG | - | chr7_3:22018127-22018146 | None:intergenic | 20.0% |
!! | AATTTCAGAAACGAAATTAA+CGG | - | chr7_3:22018927-22018946 | None:intergenic | 20.0% |
!!! | ATATTATCACTTTTCATGAA+TGG | + | chr7_3:22019298-22019317 | Msa1096950:intron | 20.0% |
!!! | ATACATTCCTTTACTTTTAT+AGG | + | chr7_3:22019499-22019518 | Msa1096950:intron | 20.0% |
!! | TAGTCAATTAATTGATGTAT+TGG | + | chr7_3:22019642-22019661 | Msa1096950:CDS | 20.0% |
! | AAGGAGATTAATAGAGAAAA+GGG | - | chr7_3:22015938-22015957 | None:intergenic | 25.0% |
! | CCATAAAGTGAATGAAATTA+GGG | - | chr7_3:22016099-22016118 | None:intergenic | 25.0% |
! | CTTTATCTTCTTATAATCTC+CGG | - | chr7_3:22016425-22016444 | None:intergenic | 25.0% |
! | ATTATAAGAAGATAAAGGAG+TGG | + | chr7_3:22016428-22016447 | Msa1096950:CDS | 25.0% |
! | TTATAAGAAGATAAAGGAGT+GGG | + | chr7_3:22016429-22016448 | Msa1096950:CDS | 25.0% |
!! | TTAGATTGAAATTGTTTTCG+GGG | + | chr7_3:22016884-22016903 | Msa1096950:intron | 25.0% |
! | TAAATAATTACAGCTATTGG+GGG | + | chr7_3:22016995-22017014 | Msa1096950:intron | 25.0% |
! | TAGTGTTAATTACAGGTATT+AGG | + | chr7_3:22017209-22017228 | Msa1096950:intron | 25.0% |
! | AGTGTTAATTACAGGTATTA+GGG | + | chr7_3:22017210-22017229 | Msa1096950:intron | 25.0% |
! | TTGAAACACTGCAATTTAAT+AGG | - | chr7_3:22017299-22017318 | None:intergenic | 25.0% |
!!! | GTTTTATGTTTTAAAGTTGG+AGG | + | chr7_3:22017380-22017399 | Msa1096950:intron | 25.0% |
! | TTAATAATCAAGGACAACAA+CGG | - | chr7_3:22017451-22017470 | None:intergenic | 25.0% |
! | AAGGTAAATAGTGTTCTTAA+TGG | + | chr7_3:22017548-22017567 | Msa1096950:intron | 25.0% |
! | TCGTTCTTATGTGATATATT+TGG | + | chr7_3:22017649-22017668 | Msa1096950:intron | 25.0% |
! | CGTTCTTATGTGATATATTT+GGG | + | chr7_3:22017650-22017669 | Msa1096950:intron | 25.0% |
!!! | AAATCCAAGGTTTTAAATCT+TGG | + | chr7_3:22017927-22017946 | Msa1096950:intron | 25.0% |
! | CTCTCAAATCATAATAATAC+TGG | - | chr7_3:22018151-22018170 | None:intergenic | 25.0% |
! | TGACCTTATATTTGTTTGTT+TGG | + | chr7_3:22018174-22018193 | Msa1096950:intron | 25.0% |
! | TGTCCAAACAAACAAATATA+AGG | - | chr7_3:22018180-22018199 | None:intergenic | 25.0% |
! | TATATTTGTTTGTTTGGACA+TGG | + | chr7_3:22018180-22018199 | Msa1096950:intron | 25.0% |
! | TATAATAGGTACTAAGTTTG+GGG | - | chr7_3:22018245-22018264 | None:intergenic | 25.0% |
! | CTATAATAGGTACTAAGTTT+GGG | - | chr7_3:22018246-22018265 | None:intergenic | 25.0% |
! | ACTATAATAGGTACTAAGTT+TGG | - | chr7_3:22018247-22018266 | None:intergenic | 25.0% |
!! | AGAAGATAGCTTTCATATTT+TGG | - | chr7_3:22018298-22018317 | None:intergenic | 25.0% |
! | AACAGACATAAAACAAATGA+TGG | - | chr7_3:22018415-22018434 | None:intergenic | 25.0% |
! | AATTAACCAAAATTCATCTG+CGG | - | chr7_3:22018471-22018490 | None:intergenic | 25.0% |
!! | TTTTTCTGCTATTGCATTTT+TGG | + | chr7_3:22018531-22018550 | Msa1096950:intron | 25.0% |
!! | TTTTCTGCTATTGCATTTTT+GGG | + | chr7_3:22018532-22018551 | Msa1096950:intron | 25.0% |
! | ATCAAATTAACTTAGAGTTG+AGG | - | chr7_3:22018852-22018871 | None:intergenic | 25.0% |
!! | TCTCTAACAATAGTTTTCTT+TGG | + | chr7_3:22018899-22018918 | Msa1096950:intron | 25.0% |
! | TGAACTTCCTTATGAATAAA+TGG | + | chr7_3:22019123-22019142 | Msa1096950:intron | 25.0% |
! | AAGTTGTAAGTACTATGTAA+TGG | - | chr7_3:22019358-22019377 | None:intergenic | 25.0% |
! | AGTACATATAATAGGCATAA+AGG | + | chr7_3:22019409-22019428 | Msa1096950:intron | 25.0% |
! | ATTGATGTATTGGAGAAAAA+TGG | + | chr7_3:22019652-22019671 | Msa1096950:CDS | 25.0% |
! | TTGATGTATTGGAGAAAAAT+GGG | + | chr7_3:22019653-22019672 | Msa1096950:CDS | 25.0% |
! | TTTGACCAAAAAATAATGCA+GGG | - | chr7_3:22019876-22019895 | None:intergenic | 25.0% |
! | ATTTGACCAAAAAATAATGC+AGG | - | chr7_3:22019877-22019896 | None:intergenic | 25.0% |
GAAGGAGATTAATAGAGAAA+AGG | - | chr7_3:22015939-22015958 | None:intergenic | 30.0% | |
CCCTAATTTCATTCACTTTA+TGG | + | chr7_3:22016096-22016115 | Msa1096950:exon | 30.0% | |
GCCATAAAGTGAATGAAATT+AGG | - | chr7_3:22016100-22016119 | None:intergenic | 30.0% | |
TTTCATTCACTTTATGGCTT+TGG | + | chr7_3:22016102-22016121 | Msa1096950:exon | 30.0% | |
!!! | GAGATTTTGGTTTTGATACA+GGG | + | chr7_3:22016247-22016266 | Msa1096950:CDS | 30.0% |
!!! | AGATTTTGGTTTTGATACAG+GGG | + | chr7_3:22016248-22016267 | Msa1096950:CDS | 30.0% |
CGGAGATTATAAGAAGATAA+AGG | + | chr7_3:22016423-22016442 | Msa1096950:CDS | 30.0% | |
!! | GTTGTTTTCTGATTTTGAGA+AGG | + | chr7_3:22016711-22016730 | Msa1096950:CDS | 30.0% |
CAAAATAACCAACCTGATAT+AGG | - | chr7_3:22016784-22016803 | None:intergenic | 30.0% | |
!! | AGGTTGGTTATTTTGTTTCA+TGG | + | chr7_3:22016789-22016808 | Msa1096950:intron | 30.0% |
GTCATGTGATTACATTCAAT+CGG | + | chr7_3:22016962-22016981 | Msa1096950:intron | 30.0% | |
AACACTGCAATTTAATAGGA+AGG | - | chr7_3:22017295-22017314 | None:intergenic | 30.0% | |
! | GACAACATTGGTTAAAACTA+TGG | - | chr7_3:22017688-22017707 | None:intergenic | 30.0% |
! | AAAACTATTGTTATCGACTG+CGG | - | chr7_3:22017847-22017866 | None:intergenic | 30.0% |
TGAAATCATGGATAAATCCA+AGG | + | chr7_3:22017914-22017933 | Msa1096950:intron | 30.0% | |
! | AAGACCAAGATTTAAAACCT+TGG | - | chr7_3:22017934-22017953 | None:intergenic | 30.0% |
TGTTGTGATTCTTAGTATTG+CGG | + | chr7_3:22017953-22017972 | Msa1096950:intron | 30.0% | |
CATTGCACAAAGCTATTAAT+TGG | - | chr7_3:22018101-22018120 | None:intergenic | 30.0% | |
! | TGAAGCACTTTGACTATAAT+AGG | - | chr7_3:22018259-22018278 | None:intergenic | 30.0% |
! | GTAGCACAATTTACCATTTT+TGG | - | chr7_3:22018338-22018357 | None:intergenic | 30.0% |
GTAGCATCGTAAACAATAAA+AGG | - | chr7_3:22018439-22018458 | None:intergenic | 30.0% | |
!!! | GCAGATGAATTTTGGTTAAT+TGG | + | chr7_3:22018470-22018489 | Msa1096950:intron | 30.0% |
! | TTTGGGATTTCAATAATGCT+AGG | + | chr7_3:22018549-22018568 | Msa1096950:intron | 30.0% |
! | CGTGATTGTTCATTTAAGAT+TGG | + | chr7_3:22018648-22018667 | Msa1096950:intron | 30.0% |
TAAAGGAGTTGAGGAATTAA+AGG | - | chr7_3:22018803-22018822 | None:intergenic | 30.0% | |
!! | TTTCGTTTCTGAAATTGTCT+CGG | + | chr7_3:22018931-22018950 | Msa1096950:intron | 30.0% |
CAATTTAACCCTAAGATTGA+AGG | - | chr7_3:22019036-22019055 | None:intergenic | 30.0% | |
CTTCAATCTTAGGGTTAAAT+TGG | + | chr7_3:22019034-22019053 | Msa1096950:intron | 30.0% | |
GTACACACCATTTATTCATA+AGG | - | chr7_3:22019133-22019152 | None:intergenic | 30.0% | |
ATGTATAAGTAGCACTTCTA+GGG | - | chr7_3:22019175-22019194 | None:intergenic | 30.0% | |
TATGTATAAGTAGCACTTCT+AGG | - | chr7_3:22019176-22019195 | None:intergenic | 30.0% | |
GTTGCTCATATTATTTGAGT+AGG | - | chr7_3:22019265-22019284 | None:intergenic | 30.0% | |
CTATGTCGAGTACATATAAT+AGG | + | chr7_3:22019401-22019420 | Msa1096950:intron | 30.0% | |
CATATAATAGGCATAAAGGT+AGG | + | chr7_3:22019413-22019432 | Msa1096950:intron | 30.0% | |
GTTGGTACCTATAAAAGTAA+AGG | - | chr7_3:22019509-22019528 | None:intergenic | 30.0% | |
! | TCAGAACATCAATTTTCAGT+TGG | + | chr7_3:22019702-22019721 | Msa1096950:CDS | 30.0% |
TAAACTGTTACTGCCATTAT+AGG | + | chr7_3:22019919-22019938 | Msa1096950:three_prime_UTR | 30.0% | |
TATAGTCCTAAGTCCTATAA+TGG | - | chr7_3:22019935-22019954 | None:intergenic | 30.0% | |
TTAGGACTATATACAACCTT+TGG | + | chr7_3:22019944-22019963 | Msa1096950:three_prime_UTR | 30.0% | |
TAGGACTATATACAACCTTT+GGG | + | chr7_3:22019945-22019964 | Msa1096950:three_prime_UTR | 30.0% | |
!! | TCTTTCTAAAACGCCGTTAA+CGG | + | chr7_3:22016015-22016034 | Msa1096950:five_prime_UTR | 35.0% |
ACCATTAACAGTTCCATCAT+CGG | - | chr7_3:22016146-22016165 | None:intergenic | 35.0% | |
GATGGAACTGTTAATGGTAA+CGG | + | chr7_3:22016148-22016167 | Msa1096950:CDS | 35.0% | |
!!! | GGAGATTTTGGTTTTGATAC+AGG | + | chr7_3:22016246-22016265 | Msa1096950:CDS | 35.0% |
TCTTCGTACTGTAAGAAACA+CGG | + | chr7_3:22016352-22016371 | Msa1096950:CDS | 35.0% | |
!!! | ATTGCCTGGGTATTTTGATA+AGG | + | chr7_3:22016519-22016538 | Msa1096950:CDS | 35.0% |
GATAGTAATAGGAAAGTGAG+TGG | + | chr7_3:22016679-22016698 | Msa1096950:CDS | 35.0% | |
!! | TTCTGATTTTGAGAAGGATG+AGG | + | chr7_3:22016717-22016736 | Msa1096950:CDS | 35.0% |
!! | TTTTGAGAAGGATGAGGTTT+TGG | + | chr7_3:22016723-22016742 | Msa1096950:CDS | 35.0% |
GAATGTAATCACATGACATG+TGG | - | chr7_3:22016959-22016978 | None:intergenic | 35.0% | |
ACATGTTTGATGTTTGACGT+CGG | - | chr7_3:22017045-22017064 | None:intergenic | 35.0% | |
TTGAATAATCACAGGTTTCG+AGG | + | chr7_3:22017093-22017112 | Msa1096950:intron | 35.0% | |
! | TTCAATGTCACTAGCATTGA+TGG | + | chr7_3:22017314-22017333 | Msa1096950:intron | 35.0% |
!!! | TGTTTTAAAGTTGGAGGGTT+TGG | + | chr7_3:22017386-22017405 | Msa1096950:intron | 35.0% |
!!! | GTTTTAAAGTTGGAGGGTTT+GGG | + | chr7_3:22017387-22017406 | Msa1096950:intron | 35.0% |
TGGCAGATATTTGACAACAT+TGG | - | chr7_3:22017700-22017719 | None:intergenic | 35.0% | |
ATGTTGTCAAATATCTGCCA+TGG | + | chr7_3:22017700-22017719 | Msa1096950:intron | 35.0% | |
CATCCTTCACAAATTGATCA+TGG | - | chr7_3:22017757-22017776 | None:intergenic | 35.0% | |
CATGATCAATTTGTGAAGGA+TGG | + | chr7_3:22017755-22017774 | Msa1096950:intron | 35.0% | |
TGAGTCATCATAAAACACCA+TGG | - | chr7_3:22017786-22017805 | None:intergenic | 35.0% | |
GACTCATAATCGCAGATTTA+TGG | + | chr7_3:22017800-22017819 | Msa1096950:intron | 35.0% | |
AGCACTAGTGTGTCAAAAAA+AGG | - | chr7_3:22018078-22018097 | None:intergenic | 35.0% | |
TCATCTTGGTCAGATGAATA+GGG | - | chr7_3:22018213-22018232 | None:intergenic | 35.0% | |
ATCATCTTGGTCAGATGAAT+AGG | - | chr7_3:22018214-22018233 | None:intergenic | 35.0% | |
!! | CCATTTTTGGAGACAAAGAA+AGG | - | chr7_3:22018325-22018344 | None:intergenic | 35.0% |
CCTTTCTTTGTCTCCAAAAA+TGG | + | chr7_3:22018322-22018341 | Msa1096950:intron | 35.0% | |
!!! | AGGGTTTTAGCTTATTTGAG+AGG | - | chr7_3:22018368-22018387 | None:intergenic | 35.0% |
AAAGCAAGCTGTCTCATAAA+GGG | - | chr7_3:22018387-22018406 | None:intergenic | 35.0% | |
! | TTCTTACCGCAGATGAATTT+TGG | + | chr7_3:22018462-22018481 | Msa1096950:intron | 35.0% |
TGTAGAGTAGAATAAGCAAC+TGG | - | chr7_3:22018508-22018527 | None:intergenic | 35.0% | |
AATAATGCTAGGACACACAT+AGG | + | chr7_3:22018560-22018579 | Msa1096950:intron | 35.0% | |
TTAAATGAACAATCACGCCT+TGG | - | chr7_3:22018645-22018664 | None:intergenic | 35.0% | |
AGTCCTGAAACTGTAAATGT+TGG | + | chr7_3:22018687-22018706 | Msa1096950:intron | 35.0% | |
GTCCTGAAACTGTAAATGTT+GGG | + | chr7_3:22018688-22018707 | Msa1096950:intron | 35.0% | |
TACCCAACATTTACAGTTTC+AGG | - | chr7_3:22018693-22018712 | None:intergenic | 35.0% | |
TCATGATTCAAGTCATGAGA+AGG | - | chr7_3:22018779-22018798 | None:intergenic | 35.0% | |
TTAAGGGATTAAAGGAGTTG+AGG | - | chr7_3:22018812-22018831 | None:intergenic | 35.0% | |
! | GGTTTGAGTTAAGGGATTAA+AGG | - | chr7_3:22018820-22018839 | None:intergenic | 35.0% |
!! | GCTCAATTGGTTTGAGTTAA+GGG | - | chr7_3:22018828-22018847 | None:intergenic | 35.0% |
!! | AGCTCAATTGGTTTGAGTTA+AGG | - | chr7_3:22018829-22018848 | None:intergenic | 35.0% |
TGTTAATCCGAGACAATTTC+AGG | - | chr7_3:22018975-22018994 | None:intergenic | 35.0% | |
AGCCTAAATCCTTCAATCTT+AGG | + | chr7_3:22019024-22019043 | Msa1096950:intron | 35.0% | |
GCCTAAATCCTTCAATCTTA+GGG | + | chr7_3:22019025-22019044 | Msa1096950:intron | 35.0% | |
ACCCTAAGATTGAAGGATTT+AGG | - | chr7_3:22019029-22019048 | None:intergenic | 35.0% | |
! | TCTCCTTGTGACTTTTCTTT+AGG | + | chr7_3:22019224-22019243 | Msa1096950:intron | 35.0% |
! | CTCCTTGTGACTTTTCTTTA+GGG | + | chr7_3:22019225-22019244 | Msa1096950:intron | 35.0% |
! | TCCTTGTGACTTTTCTTTAG+GGG | + | chr7_3:22019226-22019245 | Msa1096950:intron | 35.0% |
ATTTGAGTAGGCTTAGATTG+TGG | - | chr7_3:22019253-22019272 | None:intergenic | 35.0% | |
AGGCATAAAGGTAGGATTTA+AGG | + | chr7_3:22019421-22019440 | Msa1096950:intron | 35.0% | |
! | AAAGGTAGGATTTAAGGTTC+TGG | + | chr7_3:22019427-22019446 | Msa1096950:intron | 35.0% |
GATGCTAAGTGAACAATTAG+AGG | + | chr7_3:22019678-22019697 | Msa1096950:CDS | 35.0% | |
GTAGTAGTGTACATACCATT+TGG | + | chr7_3:22019833-22019852 | Msa1096950:three_prime_UTR | 35.0% | |
TTACTGCCATTATAGGACTT+AGG | + | chr7_3:22019926-22019945 | Msa1096950:three_prime_UTR | 35.0% | |
! | CGTGTTCCACTATTTTGTGA+CGG | - | chr7_3:22016046-22016065 | None:intergenic | 40.0% |
CAGTTCCATCATCGGAATTA+GGG | - | chr7_3:22016138-22016157 | None:intergenic | 40.0% | |
ACAGTTCCATCATCGGAATT+AGG | - | chr7_3:22016139-22016158 | None:intergenic | 40.0% | |
!! | TCCGATGATGGAACTGTTAA+TGG | + | chr7_3:22016142-22016161 | Msa1096950:CDS | 40.0% |
!! | GGTTGATGAGGAATGATTTG+AGG | + | chr7_3:22016485-22016504 | Msa1096950:CDS | 40.0% |
ACCTCCTTATCAAAATACCC+AGG | - | chr7_3:22016526-22016545 | None:intergenic | 40.0% | |
TAATAGGAAAGTGAGTGGTG+AGG | + | chr7_3:22016684-22016703 | Msa1096950:CDS | 40.0% | |
AACCAACCTGATATAGGAAC+AGG | - | chr7_3:22016778-22016797 | None:intergenic | 40.0% | |
! | ATTAGGGTTAGTGTCGAATC+TGG | + | chr7_3:22017226-22017245 | Msa1096950:intron | 40.0% |
! | TTAGTGTCGAATCTGGTGTT+AGG | + | chr7_3:22017233-22017252 | Msa1096950:intron | 40.0% |
TTGTCAAATATCTGCCATGG+CGG | + | chr7_3:22017703-22017722 | Msa1096950:intron | 40.0% | |
CTGCCATGATCAATTTGTGA+AGG | + | chr7_3:22017751-22017770 | Msa1096950:intron | 40.0% | |
AGATTTATGGCTTTCTGCCA+TGG | + | chr7_3:22017813-22017832 | Msa1096950:intron | 40.0% | |
AATCGCAGTTGAATGTGATG+TGG | + | chr7_3:22017978-22017997 | Msa1096950:intron | 40.0% | |
TGTTTGTTTGGACATGGCTT+AGG | + | chr7_3:22018186-22018205 | Msa1096950:intron | 40.0% | |
TCTGACCAAGATGATGTGAT+AGG | + | chr7_3:22018219-22018238 | Msa1096950:intron | 40.0% | |
GAAAGCAAGCTGTCTCATAA+AGG | - | chr7_3:22018388-22018407 | None:intergenic | 40.0% | |
TCGCACAAAGGTTGTAAACA+GGG | - | chr7_3:22018599-22018618 | None:intergenic | 40.0% | |
TTCGCACAAAGGTTGTAAAC+AGG | - | chr7_3:22018600-22018619 | None:intergenic | 40.0% | |
TTTACAACCTTTGTGCGAAC+AGG | + | chr7_3:22018601-22018620 | Msa1096950:intron | 40.0% | |
CTCTATAGGATACACATCCA+AGG | + | chr7_3:22018625-22018644 | Msa1096950:intron | 40.0% | |
TTAGAGTTGAGGAGCTCAAT+TGG | - | chr7_3:22018841-22018860 | None:intergenic | 40.0% | |
TGTGGATCCTGAAATTGTCT+CGG | + | chr7_3:22018965-22018984 | Msa1096950:intron | 40.0% | |
GGGAAAATATACAGCAAGTC+TGG | - | chr7_3:22019155-22019174 | None:intergenic | 40.0% | |
ACCCCTAAAGAAAAGTCACA+AGG | - | chr7_3:22019230-22019249 | None:intergenic | 40.0% | |
! | CAACTTTTGACCTTCAGCTT+AGG | + | chr7_3:22019372-22019391 | Msa1096950:intron | 40.0% |
ATAGTCACATCCTAAGCTGA+AGG | - | chr7_3:22019385-22019404 | None:intergenic | 40.0% | |
GATAAGCTTGCAAATGCTCT+TGG | + | chr7_3:22019772-22019791 | Msa1096950:CDS | 40.0% | |
TGATAAGCTGTAGTGCAAGA+AGG | + | chr7_3:22019804-22019823 | Msa1096950:exon | 40.0% | |
! | CATTTGGAGTCTACAGTAGT+GGG | + | chr7_3:22019849-22019868 | Msa1096950:three_prime_UTR | 40.0% |
!!! | TGGGTCCCTGCATTATTTTT+TGG | + | chr7_3:22019868-22019887 | Msa1096950:three_prime_UTR | 40.0% |
!! | TTCTAAAACGCCGTTAACGG+AGG | + | chr7_3:22016018-22016037 | Msa1096950:five_prime_UTR | 45.0% |
CCATCATCGGAATTAGGGTT+TGG | - | chr7_3:22016133-22016152 | None:intergenic | 45.0% | |
CCAAACCCTAATTCCGATGA+TGG | + | chr7_3:22016130-22016149 | Msa1096950:CDS | 45.0% | |
!! | TTGGACTAGGCAGGAGATTT+TGG | + | chr7_3:22016234-22016253 | Msa1096950:CDS | 45.0% |
! | TTGGTTCGAGTGAACCGAAA+TGG | + | chr7_3:22016320-22016339 | Msa1096950:CDS | 45.0% |
TGGTTCGAGTGAACCGAAAT+GGG | + | chr7_3:22016321-22016340 | Msa1096950:CDS | 45.0% | |
GAAGAAACCAACGCCCATTT+CGG | - | chr7_3:22016337-22016356 | None:intergenic | 45.0% | |
GTAAGAAACACGGTGTGAAC+CGG | + | chr7_3:22016362-22016381 | Msa1096950:CDS | 45.0% | |
TAAGAAACACGGTGTGAACC+GGG | + | chr7_3:22016363-22016382 | Msa1096950:CDS | 45.0% | |
TCTTCTTATAATCTCCGGCG+AGG | - | chr7_3:22016420-22016439 | None:intergenic | 45.0% | |
GAGTCAGGTGAGAGATGAAA+CGG | + | chr7_3:22016453-22016472 | Msa1096950:CDS | 45.0% | |
! | GAGATGAAACGGAGTCGTTT+TGG | + | chr7_3:22016464-22016483 | Msa1096950:CDS | 45.0% |
GGAATGATTTGAGGAGAGAG+AGG | + | chr7_3:22016494-22016513 | Msa1096950:CDS | 45.0% | |
!!! | GCCTGGGTATTTTGATAAGG+AGG | + | chr7_3:22016522-22016541 | Msa1096950:CDS | 45.0% |
TGTTGTTCCGGTGAATGTGT+CGG | + | chr7_3:22016609-22016628 | Msa1096950:CDS | 45.0% | |
!! | TGAGAAGGATGAGGTTTTGG+TGG | + | chr7_3:22016726-22016745 | Msa1096950:CDS | 45.0% |
CCTGATATAGGAACAGGTGA+AGG | - | chr7_3:22016772-22016791 | None:intergenic | 45.0% | |
CCTTCACCTGTTCCTATATC+AGG | + | chr7_3:22016769-22016788 | Msa1096950:CDS | 45.0% | |
CACCTGTTCCTATATCAGGT+TGG | + | chr7_3:22016773-22016792 | Msa1096950:intron | 45.0% | |
CTTGAGCATTTCCTTCTCCT+TGG | - | chr7_3:22017531-22017550 | None:intergenic | 45.0% | |
CAAGGAGAAGGAAATGCTCA+AGG | + | chr7_3:22017529-22017548 | Msa1096950:CDS | 45.0% | |
! | CTATTGTTATCGACTGCGGA+TGG | - | chr7_3:22017843-22017862 | None:intergenic | 45.0% |
! | AGCTTTGTGCAATGTTACCG+TGG | + | chr7_3:22018107-22018126 | Msa1096950:intron | 45.0% |
GCACAAAGGTTGTAAACAGG+GGG | - | chr7_3:22018597-22018616 | None:intergenic | 45.0% | |
CGCACAAAGGTTGTAAACAG+GGG | - | chr7_3:22018598-22018617 | None:intergenic | 45.0% | |
ATAGAGTCCTGTTCGCACAA+AGG | - | chr7_3:22018611-22018630 | None:intergenic | 45.0% | |
TTGTGCGAACAGGACTCTAT+AGG | + | chr7_3:22018611-22018630 | Msa1096950:intron | 45.0% | |
GTCTCGGAAAGACAAATGTG+TGG | + | chr7_3:22018947-22018966 | Msa1096950:intron | 45.0% | |
!! | GGCTGGTTGTTTCTCATTGT+TGG | - | chr7_3:22019527-22019546 | None:intergenic | 45.0% |
! | AAACGGGCTCTACATCTCAA+GGG | + | chr7_3:22019557-22019576 | Msa1096950:CDS | 45.0% |
TTGCAGTTTCATTCTGCTGC+TGG | - | chr7_3:22019732-22019751 | None:intergenic | 45.0% | |
CCACTACTGTAGACTCCAAA+TGG | - | chr7_3:22019851-22019870 | None:intergenic | 45.0% | |
! | CCATTTGGAGTCTACAGTAG+TGG | + | chr7_3:22019848-22019867 | Msa1096950:three_prime_UTR | 45.0% |
!! | AAAATATAAATTAATAATCA+AGG | - | chr7_3:22017461-22017480 | None:intergenic | 5.0% |
!!! | ATATATATTTTTTTTATGTT+AGG | + | chr7_3:22018032-22018051 | Msa1096950:intron | 5.0% |
!!! | TATATATTTTTTTTATGTTA+GGG | + | chr7_3:22018033-22018052 | Msa1096950:intron | 5.0% |
!! | TTTAATAATACTAAAAATAA+GGG | - | chr7_3:22019903-22019922 | None:intergenic | 5.0% |
!! | GAGGCACCGTCACAAAATAG+TGG | + | chr7_3:22016037-22016056 | Msa1096950:five_prime_UTR | 50.0% |
TGGCGAGGATGGAAAACCAA+CGG | + | chr7_3:22016198-22016217 | Msa1096950:CDS | 50.0% | |
GGAAGAGTGATGCTGAAAGC+CGG | + | chr7_3:22016269-22016288 | Msa1096950:CDS | 50.0% | |
! | TGCTGAAAGCCGGTTCAAAC+CGG | + | chr7_3:22016279-22016298 | Msa1096950:CDS | 50.0% |
AAGAAACACGGTGTGAACCG+GGG | + | chr7_3:22016364-22016383 | Msa1096950:CDS | 50.0% | |
GTCCGATTCAGTGTAGGAAG+CGG | + | chr7_3:22016386-22016405 | Msa1096950:CDS | 50.0% | |
CACCGCTTCCTACACTGAAT+CGG | - | chr7_3:22016391-22016410 | None:intergenic | 50.0% | |
GATAAAGGAGTGGGAGAGTC+AGG | + | chr7_3:22016438-22016457 | Msa1096950:CDS | 50.0% | |
!!! | CGGAGTCGTTTTGGTTGATG+AGG | + | chr7_3:22016473-22016492 | Msa1096950:CDS | 50.0% |
AGGAGAGAGAGGAAATTGCC+TGG | + | chr7_3:22016505-22016524 | Msa1096950:CDS | 50.0% | |
GGAGAGAGAGGAAATTGCCT+GGG | + | chr7_3:22016506-22016525 | Msa1096950:CDS | 50.0% | |
! | GATACTTGATTCGCCGTCGA+TGG | + | chr7_3:22016552-22016571 | Msa1096950:CDS | 50.0% |
!! | GAATGTGTCGGTGTCGGTTT+CGG | + | chr7_3:22016621-22016640 | Msa1096950:CDS | 50.0% |
AGGAAAGTGAGTGGTGAGGA+TGG | + | chr7_3:22016688-22016707 | Msa1096950:CDS | 50.0% | |
GGAAAGTGAGTGGTGAGGAT+GGG | + | chr7_3:22016689-22016708 | Msa1096950:CDS | 50.0% | |
TTGGAGGGTTTGGGAGACAA+TGG | + | chr7_3:22017396-22017415 | Msa1096950:intron | 50.0% | |
!! | ATATCTGCCATGGCGGATTG+CGG | + | chr7_3:22017710-22017729 | Msa1096950:intron | 50.0% |
CCTCAACTGCAATCGCATTG+CGG | + | chr7_3:22018001-22018020 | Msa1096950:intron | 50.0% | |
TGGGGCCTATCACATCATCT+TGG | - | chr7_3:22018227-22018246 | None:intergenic | 50.0% | |
ACCAGCCTCGAATCCAGAAA+CGG | + | chr7_3:22019540-22019559 | Msa1096950:CDS | 50.0% | |
TGAGATGTAGAGCCCGTTTC+TGG | - | chr7_3:22019556-22019575 | None:intergenic | 50.0% | |
! | GAAACGGGCTCTACATCTCA+AGG | + | chr7_3:22019556-22019575 | Msa1096950:CDS | 50.0% |
! | AACGGGCTCTACATCTCAAG+GGG | + | chr7_3:22019558-22019577 | Msa1096950:CDS | 50.0% |
CATCTCAAGGGGAACGTAAG+AGG | + | chr7_3:22019569-22019588 | Msa1096950:CDS | 50.0% | |
AAGGGGAACGTAAGAGGAAG+CGG | + | chr7_3:22019575-22019594 | Msa1096950:CDS | 50.0% | |
CTCTTCATTGCCGTCTCCAT+TGG | - | chr7_3:22019608-22019627 | None:intergenic | 50.0% | |
CAATGGAGACGGCAATGAAG+AGG | + | chr7_3:22019606-22019625 | Msa1096950:CDS | 50.0% | |
TGTGACGGTGCCTCCGTTAA+CGG | - | chr7_3:22016031-22016050 | None:intergenic | 55.0% | |
AGGATGGAAAACCAACGGCG+AGG | + | chr7_3:22016203-22016222 | Msa1096950:CDS | 55.0% | |
ATCTCCTGCCTAGTCCAACG+TGG | - | chr7_3:22016232-22016251 | None:intergenic | 55.0% | |
! | GCTGAAAGCCGGTTCAAACC+GGG | + | chr7_3:22016280-22016299 | Msa1096950:CDS | 55.0% |
! | AAAGCCGGTTCAAACCGGGT+CGG | + | chr7_3:22016284-22016303 | Msa1096950:CDS | 55.0% |
! | CATTCCGACCCGGTTTGAAC+CGG | - | chr7_3:22016291-22016310 | None:intergenic | 55.0% |
GGTTCAAACCGGGTCGGAAT+GGG | + | chr7_3:22016290-22016309 | Msa1096950:CDS | 55.0% | |
GAGTGAACCGAAATGGGCGT+TGG | + | chr7_3:22016327-22016346 | Msa1096950:CDS | 55.0% | |
TCCTACACTGAATCGGACCC+CGG | - | chr7_3:22016384-22016403 | None:intergenic | 55.0% | |
CGATTCAGTGTAGGAAGCGG+TGG | + | chr7_3:22016389-22016408 | Msa1096950:CDS | 55.0% | |
! | ACTTGATTCGCCGTCGATGG+CGG | + | chr7_3:22016555-22016574 | Msa1096950:CDS | 55.0% |
!! | GGCAGCATCGGTTGTTGTTC+CGG | + | chr7_3:22016597-22016616 | Msa1096950:CDS | 55.0% |
! | TCCGGTGAATGTGTCGGTGT+CGG | + | chr7_3:22016615-22016634 | Msa1096950:CDS | 55.0% |
ACCGACACCGACACATTCAC+CGG | - | chr7_3:22016619-22016638 | None:intergenic | 55.0% | |
CAGTTTCTACCACTCCTCCG+AGG | + | chr7_3:22017502-22017521 | Msa1096950:CDS | 55.0% | |
TTCCTTCTCCTTGGCAGCCT+CGG | - | chr7_3:22017522-22017541 | None:intergenic | 55.0% | |
CCGCAATGCGATTGCAGTTG+AGG | - | chr7_3:22018004-22018023 | None:intergenic | 55.0% | |
CCAGCCTCGAATCCAGAAAC+GGG | + | chr7_3:22019541-22019560 | Msa1096950:CDS | 55.0% | |
! | AGAGCCCGTTTCTGGATTCG+AGG | - | chr7_3:22019548-22019567 | None:intergenic | 55.0% |
AGGAAGCGGTTCGCAACCAA+TGG | + | chr7_3:22019589-22019608 | Msa1096950:CDS | 55.0% | |
CGGTTCGCAACCAATGGAGA+CGG | + | chr7_3:22019595-22019614 | Msa1096950:CDS | 55.0% | |
TGGAGACGGCAATGAAGAGG+AGG | + | chr7_3:22019609-22019628 | Msa1096950:CDS | 55.0% | |
TCCATCCTCGCCACCGTTCA+CGG | - | chr7_3:22016191-22016210 | None:intergenic | 60.0% | |
CGAGGTTGCCACGTTGGACT+AGG | + | chr7_3:22016221-22016240 | Msa1096950:CDS | 60.0% | |
! | GTTGCCACGTTGGACTAGGC+AGG | + | chr7_3:22016225-22016244 | Msa1096950:CDS | 60.0% |
CGGTTCAAACCGGGTCGGAA+TGG | + | chr7_3:22016289-22016308 | Msa1096950:CDS | 60.0% | |
AAACCGGGTCGGAATGGGTC+TGG | + | chr7_3:22016295-22016314 | Msa1096950:CDS | 60.0% | |
AACCGGGTCGGAATGGGTCT+GGG | + | chr7_3:22016296-22016315 | Msa1096950:CDS | 60.0% | |
AACCCAGACCCATTCCGACC+CGG | - | chr7_3:22016301-22016320 | None:intergenic | 60.0% | |
GGTCGGAATGGGTCTGGGTT+TGG | + | chr7_3:22016301-22016320 | Msa1096950:CDS | 60.0% | |
ACCGGGGTCCGATTCAGTGT+AGG | + | chr7_3:22016380-22016399 | Msa1096950:CDS | 60.0% | |
!! | GTCGGTGTCGGTTTCGGAGA+CGG | + | chr7_3:22016627-22016646 | Msa1096950:CDS | 60.0% |
!! | GTGTCGGTTTCGGAGACGGT+TGG | + | chr7_3:22016631-22016650 | Msa1096950:CDS | 60.0% |
TCGGTTTCGGAGACGGTTGG+AGG | + | chr7_3:22016634-22016653 | Msa1096950:CDS | 60.0% | |
CGGTTTCGGAGACGGTTGGA+GGG | + | chr7_3:22016635-22016654 | Msa1096950:CDS | 60.0% | |
GGTTTCGGAGACGGTTGGAG+GGG | + | chr7_3:22016636-22016655 | Msa1096950:CDS | 60.0% | |
! | ACAGCTATTGGGGGCACGTG+TGG | + | chr7_3:22017004-22017023 | Msa1096950:intron | 60.0% |
! | CAGCTATTGGGGGCACGTGT+GGG | + | chr7_3:22017005-22017024 | Msa1096950:intron | 60.0% |
TGTGAAGGATGGCAGCGCCA+TGG | + | chr7_3:22017766-22017785 | Msa1096950:intron | 60.0% | |
! | CCCGTTTCTGGATTCGAGGC+TGG | - | chr7_3:22019544-22019563 | None:intergenic | 60.0% |
ATCCTCGCCACCGTTCACGG+CGG | - | chr7_3:22016188-22016207 | None:intergenic | 65.0% | |
CAACGTGGCAACCTCGCCGT+TGG | - | chr7_3:22016217-22016236 | None:intergenic | 65.0% | |
CAACGGCGAGGTTGCCACGT+TGG | + | chr7_3:22016215-22016234 | Msa1096950:CDS | 65.0% | |
AAGCGGTGGAGCAACCTCGC+CGG | + | chr7_3:22016403-22016422 | Msa1096950:CDS | 65.0% | |
! | TGATTCGCCGTCGATGGCGG+TGG | + | chr7_3:22016558-22016577 | Msa1096950:CDS | 65.0% |
GGCTGCAGCTGTGGCAGCAT+CGG | + | chr7_3:22016585-22016604 | Msa1096950:CDS | 65.0% | |
GGAGACGGTTGGAGGGGATG+AGG | + | chr7_3:22016642-22016661 | Msa1096950:CDS | 65.0% | |
GACGGTTGGAGGGGATGAGG+AGG | + | chr7_3:22016645-22016664 | Msa1096950:CDS | 65.0% | |
CTTCTCCTTGGCAGCCTCGG+AGG | - | chr7_3:22017519-22017538 | None:intergenic | 65.0% | |
CTCCGAGGCTGCCAAGGAGA+AGG | + | chr7_3:22017517-22017536 | Msa1096950:CDS | 65.0% | |
!! | TCTGCCATGGCGGATTGCGG+TGG | + | chr7_3:22017713-22017732 | Msa1096950:intron | 65.0% |
!! | CTGCCATGGCGGATTGCGGT+GGG | + | chr7_3:22017714-22017733 | Msa1096950:intron | 65.0% |
TCTCCCACCGCAATCCGCCA+TGG | - | chr7_3:22017720-22017739 | None:intergenic | 65.0% | |
CGACTGCGGATGGCAGACCA+TGG | - | chr7_3:22017833-22017852 | None:intergenic | 65.0% | |
CCACCGTCCTCCGCCGTGAA+CGG | + | chr7_3:22016175-22016194 | Msa1096950:CDS | 70.0% | |
CCACCGTTCACGGCGGAGGA+CGG | - | chr7_3:22016181-22016200 | None:intergenic | 70.0% | |
GCCGTGAACGGTGGCGAGGA+TGG | + | chr7_3:22016187-22016206 | Msa1096950:CDS | 70.0% | |
CCTTGGCAGCCTCGGAGGAG+TGG | - | chr7_3:22017514-22017533 | None:intergenic | 70.0% | |
CCACTCCTCCGAGGCTGCCA+AGG | + | chr7_3:22017511-22017530 | Msa1096950:CDS | 70.0% | |
CCGTTCACGGCGGAGGACGG+TGG | - | chr7_3:22016178-22016197 | None:intergenic | 75.0% | |
CCGTCCTCCGCCGTGAACGG+TGG | + | chr7_3:22016178-22016197 | Msa1096950:CDS | 75.0% | |
CTCGCCACCGTTCACGGCGG+AGG | - | chr7_3:22016185-22016204 | None:intergenic | 75.0% | |
CTCCGCCGTGAACGGTGGCG+AGG | + | chr7_3:22016183-22016202 | Msa1096950:CDS | 75.0% | |
! | GCCGTCGATGGCGGTGGCAG+CGG | + | chr7_3:22016564-22016583 | Msa1096950:CDS | 75.0% |
GCCGCTGCCACCGCCATCGA+CGG | - | chr7_3:22016568-22016587 | None:intergenic | 75.0% | |
GGTGGCAGCGGCTGCAGCTG+TGG | + | chr7_3:22016576-22016595 | Msa1096950:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 22015923 | 22019976 | 22015923 | ID=Msa1096950;Name=Msa1096950 |
chr7_3 | mRNA | 22015923 | 22019976 | 22015923 | ID=Msa1096950-mRNA-1;Parent=Msa1096950;Name=Msa1096950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|1|1|1|1|1|3|160|341 |
chr7_3 | exon | 22015923 | 22016790 | 22015923 | ID=Msa1096950-mRNA-1:exon:4818;Parent=Msa1096950-mRNA-1 |
chr7_3 | exon | 22017497 | 22017550 | 22017497 | ID=Msa1096950-mRNA-1:exon:4819;Parent=Msa1096950-mRNA-1 |
chr7_3 | exon | 22019521 | 22019976 | 22019521 | ID=Msa1096950-mRNA-1:exon:4820;Parent=Msa1096950-mRNA-1 |
chr7_3 | five_prime_UTR | 22015923 | 22016114 | 22015923 | ID=Msa1096950-mRNA-1:five_prime_utr;Parent=Msa1096950-mRNA-1 |
chr7_3 | CDS | 22016115 | 22016790 | 22016115 | ID=Msa1096950-mRNA-1:cds;Parent=Msa1096950-mRNA-1 |
chr7_3 | CDS | 22017497 | 22017550 | 22017497 | ID=Msa1096950-mRNA-1:cds;Parent=Msa1096950-mRNA-1 |
chr7_3 | CDS | 22019521 | 22019816 | 22019521 | ID=Msa1096950-mRNA-1:cds;Parent=Msa1096950-mRNA-1 |
chr7_3 | three_prime_UTR | 22019817 | 22019976 | 22019817 | ID=Msa1096950-mRNA-1:three_prime_utr;Parent=Msa1096950-mRNA-1 |
Gene Sequence |
Protein sequence |