AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380900 MtrunA17_Chr4g0048931 94.878 1230 62 1 1 1229 1 1230 0.0 2312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380900 AT1G61690.1 47.045 1286 508 37 1 1228 1 1171 0.0 907
Msa1380900 AT1G20110.1 44.262 61 31 2 16 73 450 510 6.62e-11 67.0

Find 273 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGCGTCAAGAAATTT+TGG 0.135004 tig0020408:-111781 Msa1380900:CDS
CTTCTTTACGAGGGAATAAT+TGG 0.166408 tig0020408:-116327 Msa1380900:CDS
CAGTTGGGCTTCCAGATTCT+TGG 0.186211 tig0020408:+112292 None:intergenic
GGCCATCTCTCCGTAGCTTT+AGG 0.215556 tig0020408:+111499 None:intergenic
GCCATCTCTCCGTAGCTTTA+GGG 0.246953 tig0020408:+111500 None:intergenic
TATCTTGGCTTCCAATGTTT+TGG 0.251942 tig0020408:+112664 None:intergenic
TTTGTCAAAGGTTTGAGATT+TGG 0.253265 tig0020408:+113459 None:intergenic
GTACTAGTAGCTTCCTTAAC+AGG 0.257183 tig0020408:+112434 None:intergenic
TTGGTTAGGGTTCTCGATTT+TGG 0.275780 tig0020408:+111251 None:intergenic
GAAATTCTCAACCAGATTCT+TGG 0.290064 tig0020408:-114459 Msa1380900:CDS
AATTCAATGCTTACTAATCT+AGG 0.296937 tig0020408:-112500 Msa1380900:CDS
AGCTGGTGCTTTGGAATCAC+TGG 0.301108 tig0020408:-113509 Msa1380900:CDS
CCCTCTCTTAAAAGCTTTCA+AGG 0.313296 tig0020408:+114167 None:intergenic
GCCATTTCTGATAATCTTGA+TGG 0.313917 tig0020408:-113574 Msa1380900:CDS
CTGAATTCATTGTTAACATC+TGG 0.325263 tig0020408:-111105 Msa1380900:CDS
TGCTCATGATCATGCAGATT+TGG 0.328715 tig0020408:+113622 None:intergenic
ATCCACCGCATCTGACTTAT+CGG 0.329738 tig0020408:+111398 None:intergenic
ACAAAACGAGTGCACGATTC+CGG 0.339098 tig0020408:+116502 None:intergenic
GATGCTCATCATGTGCAAAA+TGG 0.344797 tig0020408:+112168 None:intergenic
AATCGCCTCATTTAAAATAA+AGG 0.344828 tig0020408:+110826 None:intergenic
CCCTGAGTTAGCTGGTGCTT+TGG 0.345146 tig0020408:-113518 Msa1380900:CDS
TCATCAACTGCCACATCAAC+TGG 0.345429 tig0020408:+112572 None:intergenic
AAAGTCAGCAAACTTGAGTT+TGG 0.346435 tig0020408:-113917 Msa1380900:CDS
AACGGCTTTGCAGCAGCATT+CGG 0.347511 tig0020408:+111579 None:intergenic
ACGGCTTTGCAGCAGCATTC+GGG 0.356227 tig0020408:+111580 None:intergenic
AGCAATGGCGATATTGAAAA+AGG 0.361303 tig0020408:-113362 Msa1380900:CDS
TTGCGACAGGGACGCAGGGC+TGG 0.361700 tig0020408:-114652 Msa1380900:CDS
AGCGGGTCCTACTATTCCTT+TGG 0.366228 tig0020408:-111946 Msa1380900:CDS
AGAGCTGGGATGGTCTGATT+TGG 0.366288 tig0020408:-113959 Msa1380900:CDS
CAATCATCATCGACGAATAC+TGG 0.374392 tig0020408:-113040 Msa1380900:CDS
AACTGAAACAACGAATAGTA+TGG 0.379012 tig0020408:-114292 Msa1380900:CDS
AGCATCCATCTCTTCTATCT+TGG 0.379511 tig0020408:+112649 None:intergenic
TCTTTCACTCCTTACGGACT+TGG 0.380081 tig0020408:-112927 Msa1380900:CDS
CATATGCCAGATCTACTTAC+TGG 0.381048 tig0020408:-112047 Msa1380900:CDS
GCACTCACCTCGGCAGATAA+TGG 0.381676 tig0020408:+112146 None:intergenic
TGCAGAGGAAGTCCTTAAAA+TGG 0.381959 tig0020408:-112687 Msa1380900:CDS
AGTTTGAGTTCTGAAATTAC+TGG 0.385842 tig0020408:-113256 Msa1380900:CDS
AAAACTATCAGCTTGAATAA+AGG 0.385999 tig0020408:+111038 None:intergenic
TGCAAAAGTTTCTGCAATCA+AGG 0.386217 tig0020408:+113879 None:intergenic
ATCACTCGTCGTGCAAGAAC+CGG 0.392721 tig0020408:-116521 Msa1380900:five_prime_UTR
GTTCTTCCAGTTGCTTCTCT+AGG 0.393214 tig0020408:+113728 None:intergenic
CGTTGATGCCTCTAATTGCC+AGG 0.394991 tig0020408:-116302 Msa1380900:CDS
ATTGAGAAGGGAAGGGAAAA+TGG 0.395881 tig0020408:-113137 Msa1380900:CDS
TCAGCAACAAGTCCTTGTTT+TGG 0.397436 tig0020408:+112255 None:intergenic
GGCTCTCAAAATCTTCCAGT+TGG 0.398361 tig0020408:+112276 None:intergenic
GAAGAACAGGAACTCCTTGC+TGG 0.401130 tig0020408:-113712 Msa1380900:CDS
TGATGTGTTGGAAACATTGC+TGG 0.402289 tig0020408:+111629 None:intergenic
TGAGAGGCAAGCAGATGCTT+TGG 0.402822 tig0020408:-114136 Msa1380900:CDS
ACCATCAAGATTATCAGAAA+TGG 0.406595 tig0020408:+113573 None:intergenic
CTCAGAAAAGTATCATCAAC+TGG 0.408151 tig0020408:+112830 None:intergenic
CAAGTGAAAATCTCACAAAA+AGG 0.409098 tig0020408:-112121 Msa1380900:CDS
GCTCTCAAAATCTTCCAGTT+GGG 0.415509 tig0020408:+112277 None:intergenic
TGCAAAGACAGGTGAAGAAA+AGG 0.415846 tig0020408:-113860 Msa1380900:CDS
ACATTTGACTGGTTTGTGTT+TGG 0.416861 tig0020408:+111834 None:intergenic
AGAATTTCATCTTCATCTCT+AGG 0.417922 tig0020408:+114474 None:intergenic
AGAGAAGCAACTGGAAGAAC+AGG 0.422268 tig0020408:-113725 Msa1380900:CDS
CAAGAATCTGGAAGCCCAAC+TGG 0.425253 tig0020408:-112291 Msa1380900:CDS
AAGTCAATGCTGCTACTTCA+AGG 0.427028 tig0020408:-111072 Msa1380900:three_prime_UTR
CTAGTACTGTCACAACTTCA+AGG 0.427339 tig0020408:-112418 Msa1380900:CDS
TTCCCTCGTAAAGAAGGCTT+TGG 0.427802 tig0020408:+116334 None:intergenic
ACGCAAAGCCATTCTTTGTT+GGG 0.429998 tig0020408:+114744 None:intergenic
AGTGACCGATGAGGATTTGA+TGG 0.430553 tig0020408:-113542 Msa1380900:CDS
TGCGACAGGGACGCAGGGCT+GGG 0.431204 tig0020408:-114651 Msa1380900:CDS
TACTTCAGAACTTCAAGAGC+TGG 0.434040 tig0020408:-113974 Msa1380900:CDS
CACGCAAAGCCATTCTTTGT+TGG 0.435300 tig0020408:+114743 None:intergenic
AAGAATGGCTTTGCGTGGAC+AGG 0.438151 tig0020408:-114737 Msa1380900:CDS
TGTGCAAAATGGGAGTTTGC+AGG 0.440792 tig0020408:+112179 None:intergenic
TGTTCCAGATTATGCTTCTC+AGG 0.442874 tig0020408:-111811 Msa1380900:CDS
TGAAGCGCAGTTGGAGGAGT+TGG 0.444540 tig0020408:-111433 Msa1380900:CDS
TGACCGTTTCAAGTTGCAAC+AGG 0.444966 tig0020408:-111547 Msa1380900:CDS
CAACCTCAGTCTTGTCAATC+CGG 0.445432 tig0020408:+113833 None:intergenic
GGCCTGTCGAAGTTCGTCCC+TGG 0.446077 tig0020408:+111707 None:intergenic
CAATTATTCCCTCGTAAAGA+AGG 0.446224 tig0020408:+116328 None:intergenic
TTGCTGGTGGAGACAGTGTT+TGG 0.447561 tig0020408:+111645 None:intergenic
TTAGAGAAGAGGTTGGAGGA+TGG 0.449154 tig0020408:-111678 Msa1380900:CDS
GCGGTTAGTTTGAAACGATC+AGG 0.449589 tig0020408:-111183 Msa1380900:CDS
GCTCTCTTTGAATCATCAAC+CGG 0.451246 tig0020408:+113188 None:intergenic
AGCATATCTTTCACTCCTTA+CGG 0.451437 tig0020408:-112933 Msa1380900:CDS
CCATTACCAGTAAGTAGATC+TGG 0.452648 tig0020408:+112041 None:intergenic
AAAGACATTTCTGTTGAGTC+TGG 0.453344 tig0020408:-114045 Msa1380900:CDS
TCGTCCTGAGAAGCATAATC+TGG 0.454913 tig0020408:+111807 None:intergenic
TTGAACAACATTTGATGTGT+TGG 0.459609 tig0020408:+111617 None:intergenic
GCCTCTTCTAGCTTCTTACA+AGG 0.464066 tig0020408:+114688 None:intergenic
AAAGGAAGGCACTTGCTTTG+AGG 0.464115 tig0020408:-112358 Msa1380900:CDS
TTATCTGCTCTGAAAGCTAC+TGG 0.464175 tig0020408:-111339 Msa1380900:CDS
GAGAACTCTTAGCGTTGAAA+AGG 0.464290 tig0020408:-112376 Msa1380900:CDS
GGAACAACCCTGGCAATTAG+AGG 0.465260 tig0020408:+116294 None:intergenic
GTAAGCATTGAATTCAATGC+TGG 0.472004 tig0020408:+112509 None:intergenic
ATTGCTCATAGCTCCTCAAC+TGG 0.473098 tig0020408:-112080 Msa1380900:CDS
TCCCTTCCCGTCTTAAAGCA+AGG 0.473525 tig0020408:+112720 None:intergenic
GTTACGTCAGCAAGCTTTAG+CGG 0.475113 tig0020408:-114238 Msa1380900:CDS
AATCTGGAACAACATTTGAC+TGG 0.475130 tig0020408:+111823 None:intergenic
CCAGATCTACTTACTGGTAA+TGG 0.475511 tig0020408:-112041 Msa1380900:CDS
AAATTTCTTGACGCAAAGAA+AGG 0.475848 tig0020408:+111784 None:intergenic
CAGAAGATGTTAGCGAAGAT+CGG 0.476728 tig0020408:-116364 Msa1380900:exon
AGCAGAAGCTGAGTTAGAAC+GGG 0.476768 tig0020408:-111466 Msa1380900:CDS
CAGCTTCTGCTTCCTCTGTT+CGG 0.477351 tig0020408:+111478 None:intergenic
GTTAACCTTGCGATTGATGA+AGG 0.479727 tig0020408:+116261 None:intergenic
CCCTTCCCGTCTTAAAGCAA+GGG 0.482007 tig0020408:+112721 None:intergenic
GCTTGCTGACGTAACTCATC+AGG 0.482310 tig0020408:+114246 None:intergenic
TCAGAGCAGATAAGAGTTGA+GGG 0.485201 tig0020408:+111349 None:intergenic
ACTCCTGTTGCAACTTGAAA+CGG 0.485424 tig0020408:+111544 None:intergenic
CATAAAAGAAGAACCTGTTA+AGG 0.489001 tig0020408:-112447 Msa1380900:CDS
GGATTGTTCGAAGATTTAGA+AGG 0.489464 tig0020408:+112881 None:intergenic
GCATCTTCTTCAAGTACTAC+AGG 0.490304 tig0020408:-114357 Msa1380900:CDS
GGCACTTGCTTTGAGGCGCA+AGG 0.490504 tig0020408:-112351 Msa1380900:CDS
CCTCGTAAAGAAGGCTTTGG+TGG 0.490657 tig0020408:+116337 None:intergenic
GCAAAGACAGGTGAAGAAAA+GGG 0.490919 tig0020408:-113859 Msa1380900:CDS
CAGGGACGCAGGGCTGGGAG+AGG 0.492123 tig0020408:-114646 Msa1380900:intron
TGAATTCATTGTTAACATCT+GGG 0.492329 tig0020408:-111104 Msa1380900:CDS
TGAATGTTGTATCATATGTT+TGG 0.492344 tig0020408:-110852 Msa1380900:three_prime_UTR
GAGGAGTCCAAAGGAATAGT+AGG 0.493103 tig0020408:+111939 None:intergenic
CTTTCACTCCTTACGGACTT+GGG 0.493296 tig0020408:-112926 Msa1380900:CDS
AGCACGATTTGAGTTGCGAC+AGG 0.494331 tig0020408:-114665 Msa1380900:CDS
AGGAAAACAAGCTGAAGCCT+TGG 0.495773 tig0020408:-111163 Msa1380900:CDS
AAACGGTCACGACTAGTAAA+CGG 0.495896 tig0020408:+111561 None:intergenic
TTCTTTACGAGGGAATAATT+GGG 0.496857 tig0020408:-116326 Msa1380900:CDS
AGAAGGTTCTTGCATTGAGA+AGG 0.498127 tig0020408:-113150 Msa1380900:CDS
ATGCAGCGCTAACTGATCTC+TGG 0.498371 tig0020408:+114376 None:intergenic
CACTCCTTACGGACTTGGGT+TGG 0.500597 tig0020408:-112922 Msa1380900:CDS
TAAGCTTGCAGAAGCTAAAG+AGG 0.501280 tig0020408:-113770 Msa1380900:CDS
TCATCTGAAAATTGTAAATG+TGG 0.502699 tig0020408:-110893 Msa1380900:three_prime_UTR
GTGCTTTGGAATCACTGGGT+TGG 0.504177 tig0020408:-113504 Msa1380900:CDS
AGAAGATGTTAGCGAAGATC+GGG 0.504948 tig0020408:-116363 Msa1380900:exon
GAAGAATAATGTACAGGTTG+AGG 0.507140 tig0020408:-112624 Msa1380900:CDS
GGCAATTGAAGCGCAGTTGG+AGG 0.509228 tig0020408:-111439 Msa1380900:CDS
TGAGCATCAGCTGATGGAGA+TGG 0.510663 tig0020408:-113077 Msa1380900:CDS
CAACCTCTTCTCTAACAGCT+TGG 0.511169 tig0020408:+111686 None:intergenic
GCCACTACGACCTTTGTCAC+TGG 0.511282 tig0020408:+114398 None:intergenic
ATGCTCATCATGTGCAAAAT+GGG 0.511451 tig0020408:+112169 None:intergenic
TATAAAATTCTGAAAGGAGA+CGG 0.512824 tig0020408:-114204 Msa1380900:CDS
TGAAAATTGAAACTATTGAA+TGG 0.513382 tig0020408:+110913 None:intergenic
TCCAAAGCACCAGCTAACTC+AGG 0.514575 tig0020408:+113517 None:intergenic
AAGCAGAAGCTGAGTTAGAA+CGG 0.518122 tig0020408:-111467 Msa1380900:CDS
CAGAACTTCAAGAGCTGGGA+TGG 0.518671 tig0020408:-113969 Msa1380900:CDS
CCTTAAAATGGCCAAAACAT+TGG 0.518990 tig0020408:-112675 Msa1380900:CDS
TTGAGTTGCGACAGGGACGC+AGG 0.519807 tig0020408:-114657 Msa1380900:CDS
TAGCAACGCTTCTTTGTCAA+AGG 0.522640 tig0020408:+113447 None:intergenic
AGCCAGGGACGAACTTCGAC+AGG 0.523706 tig0020408:-111709 Msa1380900:CDS
TTTAAGACGGGAAGGGAAAA+CGG 0.523794 tig0020408:-112714 Msa1380900:CDS
TCCTCAGACTGGTAAAGATA+AGG 0.524696 tig0020408:-114004 Msa1380900:CDS
AAGTTGTACCCAACAAAGAA+TGG 0.524769 tig0020408:-114752 Msa1380900:CDS
AGAGAGGGAAGGAGCTTGAG+AGG 0.525287 tig0020408:-114152 Msa1380900:CDS
GAAAGTGACTTAAACAACAC+TGG 0.526972 tig0020408:-113328 Msa1380900:CDS
TTGATGGACCCTGAGTTAGC+TGG 0.527871 tig0020408:-113526 Msa1380900:CDS
AAAGGCCCTTGCTTTAAGAC+GGG 0.530144 tig0020408:-112726 Msa1380900:CDS
GAATACAAATGTCATCTGAA+TGG 0.530151 tig0020408:+110774 None:intergenic
TGTTTCTGCTGTAGTAGAAG+AGG 0.530908 tig0020408:+116433 None:intergenic
GTCAGCAAACTTGAGTTTGG+AGG 0.531192 tig0020408:-113914 Msa1380900:CDS
GCTGGTGCTTTGGAATCACT+GGG 0.535449 tig0020408:-113508 Msa1380900:CDS
GGCACGTCGAAGAGCATCCA+AGG 0.535888 tig0020408:+111146 None:intergenic
AAGGAAAACTAACAGAAGCC+AGG 0.536128 tig0020408:-111725 Msa1380900:CDS
TTCAGAGCAGATAAGAGTTG+AGG 0.537619 tig0020408:+111348 None:intergenic
CAGCACCACTGTAGAAGGTG+TGG 0.537683 tig0020408:-114790 Msa1380900:CDS
ATGTGGCAGTTGATGAAGAA+AGG 0.539322 tig0020408:-112565 Msa1380900:CDS
ATAAAATTCTGAAAGGAGAC+GGG 0.540491 tig0020408:-114203 Msa1380900:CDS
AAATAATAATGCCGCTTCCA+CGG 0.543317 tig0020408:-113224 Msa1380900:CDS
AAAGTAAAGCAGAAATTCAG+AGG 0.543735 tig0020408:-112769 Msa1380900:CDS
AACGTCAAGCCCTAAAGCTA+CGG 0.544391 tig0020408:-111509 Msa1380900:CDS
GAAAGGCCCTTGCTTTAAGA+CGG 0.545586 tig0020408:-112727 Msa1380900:CDS
ACTTCAGAACTTCAAGAGCT+GGG 0.547171 tig0020408:-113973 Msa1380900:CDS
GGGAGAAATAGAAGAGGCTG+AGG 0.548311 tig0020408:-112330 Msa1380900:CDS
TGAATTGAGCGGAACAACCC+TGG 0.551547 tig0020408:+116284 None:intergenic
GAATAGTATGGCTGTTGATG+TGG 0.551719 tig0020408:-114280 Msa1380900:CDS
GAAGGTTCTTGCATTGAGAA+GGG 0.551906 tig0020408:-113149 Msa1380900:CDS
GACTTCTACTCGCTGCATGC+AGG 0.553919 tig0020408:+113011 None:intergenic
GCCCTTGCTTTAAGACGGGA+AGG 0.554192 tig0020408:-112722 Msa1380900:CDS
CAAGGTTCACATATACGTAC+AGG 0.556070 tig0020408:+114706 None:intergenic
GTAAGGAGTGAAAGATATGC+TGG 0.556679 tig0020408:+112935 None:intergenic
GCAGTTGCTTTGAAAAGAGA+AGG 0.558654 tig0020408:-111744 Msa1380900:CDS
GTTCTTGCATTGAGAAGGGA+AGG 0.558660 tig0020408:-113145 Msa1380900:CDS
AGCTGAGTTAGAACGGGCAA+AGG 0.559624 tig0020408:-111460 Msa1380900:CDS
AATCTAGGATGGAAGGATGA+AGG 0.560283 tig0020408:-112485 Msa1380900:CDS
AAAGGCAATTGAAGCGCAGT+TGG 0.560739 tig0020408:-111442 Msa1380900:CDS
TTCAGTTAATTCATCTCAAG+CGG 0.560902 tig0020408:-111964 Msa1380900:CDS
CTTGTTGCTGAATGCATCCA+AGG 0.561407 tig0020408:-112243 Msa1380900:CDS
GCTTACTAATCTAGGATGGA+AGG 0.561754 tig0020408:-112492 Msa1380900:CDS
GCCCTAAAGCTACGGAGAGA+TGG 0.561928 tig0020408:-111501 Msa1380900:CDS
AGCACCACTGTAGAAGGTGT+GGG 0.564062 tig0020408:-114789 Msa1380900:CDS
CTTCAATTCTCCAGTTGATG+TGG 0.564266 tig0020408:-112582 Msa1380900:CDS
CCACCAAAGCCTTCTTTACG+AGG 0.565763 tig0020408:-116337 Msa1380900:CDS
GGACATGGTTGTTTCAGAAG+AGG 0.567833 tig0020408:-112543 Msa1380900:CDS
TTCAGCTAAGGAAAGCGGCT+CGG 0.568308 tig0020408:-114110 Msa1380900:CDS
GGCTCTAACGTTGAAGCGTG+AGG 0.568601 tig0020408:-113794 Msa1380900:CDS
AGGGAAAACGGAGGATGCAG+AGG 0.569218 tig0020408:-112702 Msa1380900:CDS
CATTCCAACCCAAGTCCGTA+AGG 0.571820 tig0020408:+112918 None:intergenic
TCAGCAAACTTGAGTTTGGA+GGG 0.572121 tig0020408:-113913 Msa1380900:CDS
ACAAAGTCACTTCCTCAGAC+TGG 0.572322 tig0020408:-114015 Msa1380900:CDS
CAGGTGAAGAAAAGGGCAGC+CGG 0.572523 tig0020408:-113852 Msa1380900:CDS
CCTCTAGTTGAGGAAGGAAG+TGG 0.572860 tig0020408:-112989 Msa1380900:CDS
ATGCATAGAGTGGCCAGTTG+AGG 0.573144 tig0020408:+112067 None:intergenic
GGAAGCCAAGATAGAAGAGA+TGG 0.573762 tig0020408:-112654 Msa1380900:CDS
TGTAAATGTGGTTCTAAACA+TGG 0.576409 tig0020408:-110881 Msa1380900:three_prime_UTR
CGGCTTTGCAGCAGCATTCG+GGG 0.576851 tig0020408:+111581 None:intergenic
TGCTCTGAAGAATAATGTAC+AGG 0.578058 tig0020408:-112630 Msa1380900:CDS
ATCAGCATTAATACGCGGCA+TGG 0.578083 tig0020408:-113665 Msa1380900:CDS
ATTCACCTTCATCAATCGCA+AGG 0.579513 tig0020408:-116266 Msa1380900:intron
ATGCTTTGGAAATTCAGCTA+AGG 0.580873 tig0020408:-114122 Msa1380900:CDS
TTATCATCATATGTCTTCGA+AGG 0.581242 tig0020408:+112860 None:intergenic
AGAATGGCTTTGCGTGGACA+GGG 0.583680 tig0020408:-114736 Msa1380900:CDS
CAATGCTTACTAATCTAGGA+TGG 0.583962 tig0020408:-112496 Msa1380900:CDS
GCTCTTAATCAAAAGCGAGC+AGG 0.584439 tig0020408:-113397 Msa1380900:CDS
TAAGCATTGAATTCAATGCT+GGG 0.587214 tig0020408:+112510 None:intergenic
TGCCGATAAGTCAGATGCGG+TGG 0.587474 tig0020408:-111400 Msa1380900:CDS
AGTAAGTATAAAATTCTGAA+AGG 0.588864 tig0020408:-114210 Msa1380900:CDS
AGGCCAAGCTGTTAGAGAAG+AGG 0.593828 tig0020408:-111689 Msa1380900:CDS
AGAAGTCCTCTAGTTGAGGA+AGG 0.594048 tig0020408:-112995 Msa1380900:CDS
TCCTTATCTTTACCAGTCTG+AGG 0.594057 tig0020408:+114003 None:intergenic
CACCAAAGCCTTCTTTACGA+GGG 0.594410 tig0020408:-116336 Msa1380900:CDS
GCTGTTAGAGAAGAGGTTGG+AGG 0.596896 tig0020408:-111682 Msa1380900:CDS
GTTGATGCCTCTAATTGCCA+GGG 0.598704 tig0020408:-116301 Msa1380900:CDS
GAGTAGAAGTCCTCTAGTTG+AGG 0.600375 tig0020408:-112999 Msa1380900:CDS
GGAAATTCAGCTAAGGAAAG+CGG 0.600558 tig0020408:-114115 Msa1380900:CDS
TCAGTTAATTCATCTCAAGC+GGG 0.600749 tig0020408:-111963 Msa1380900:CDS
AGTTCTTGAGCATCAGCTGA+TGG 0.601408 tig0020408:-113083 Msa1380900:CDS
TGAGTTGCGACAGGGACGCA+GGG 0.605256 tig0020408:-114656 Msa1380900:CDS
GTTCCGTCTGAATCATCTCA+CGG 0.608299 tig0020408:-112209 Msa1380900:CDS
AGGTAATACTGAAGAAGCAA+TGG 0.609705 tig0020408:-113377 Msa1380900:CDS
GCACTTGCTTTGAGGCGCAA+GGG 0.610522 tig0020408:-112350 Msa1380900:CDS
ACTATCAGCTTGAATAAAGG+AGG 0.611918 tig0020408:+111041 None:intergenic
CAAGCTGTTAGAGAAGAGGT+TGG 0.612824 tig0020408:-111685 Msa1380900:CDS
GTTGGAGGAGTTGGCTGCTG+AGG 0.613394 tig0020408:-111424 Msa1380900:CDS
TTCACTTGAAGCACTCACCT+CGG 0.614898 tig0020408:+112136 None:intergenic
AGGAAAACTAACAGAAGCCA+GGG 0.615723 tig0020408:-111724 Msa1380900:CDS
AAGCAATCAACCAGTGACAA+AGG 0.616395 tig0020408:-114408 Msa1380900:CDS
TGTGGCAGTTGATGAAGAAA+GGG 0.617619 tig0020408:-112564 Msa1380900:CDS
CAACAAAGAATGGCTTTGCG+TGG 0.621792 tig0020408:-114742 Msa1380900:CDS
GTCACAACTTCAAGGAACAA+AGG 0.622653 tig0020408:-112410 Msa1380900:CDS
AAAGTGACTTAAACAACACT+GGG 0.624537 tig0020408:-113327 Msa1380900:CDS
ACGTAACTCATCAGGAGTGG+TGG 0.624698 tig0020408:+114254 None:intergenic
GCACCACTGTAGAAGGTGTG+GGG 0.625379 tig0020408:-114788 Msa1380900:CDS
GCTCTAACGTTGAAGCGTGA+GGG 0.625690 tig0020408:-113793 Msa1380900:CDS
AGGGTCCATCAAATCCTCAT+CGG 0.627532 tig0020408:+113537 None:intergenic
CCACTTCCTTCCTCAACTAG+AGG 0.628017 tig0020408:+112989 None:intergenic
ACGGAGAGATGGCCGAACAG+AGG 0.628540 tig0020408:-111490 Msa1380900:CDS
TTTCCGTGAGATGATTCAGA+CGG 0.629170 tig0020408:+112206 None:intergenic
AATCTGCATGATCATGAGCA+TGG 0.631390 tig0020408:-113619 Msa1380900:CDS
CAGAATCTTCAGCACCAGCA+AGG 0.632957 tig0020408:+113698 None:intergenic
ACTCTTAGCGTTGAAAAGGA+AGG 0.636692 tig0020408:-112372 Msa1380900:CDS
ACCTTGTAAGAAGCTAGAAG+AGG 0.636754 tig0020408:-114689 Msa1380900:CDS
GTTGCCTTCTGGAAACATGT+CGG 0.637060 tig0020408:-114079 Msa1380900:CDS
GAAAGGAGACGGGAAATCTG+AGG 0.642954 tig0020408:-114193 Msa1380900:CDS
CCAAAGCACCAGCTAACTCA+GGG 0.645234 tig0020408:+113518 None:intergenic
ACCAGTGACAAAGGTCGTAG+TGG 0.645600 tig0020408:-114399 Msa1380900:CDS
AATTCAGTCATTGAAAAGAG+AGG 0.645693 tig0020408:-113419 Msa1380900:CDS
CCCTTGCTTTAAGACGGGAA+GGG 0.647794 tig0020408:-112721 Msa1380900:CDS
AATAGTATGGCTGTTGATGT+GGG 0.649232 tig0020408:-114279 Msa1380900:CDS
CACCACTGTAGAAGGTGTGG+GGG 0.651612 tig0020408:-114787 Msa1380900:CDS
AGATTCACTGAGGAGTCCAA+AGG 0.654296 tig0020408:+111930 None:intergenic
TAGTAGAAGAGGATTAACGA+AGG 0.654716 tig0020408:+116444 None:intergenic
AAGTAAAGCAGAAATTCAGA+GGG 0.660938 tig0020408:-112768 Msa1380900:CDS
GATCTGGCATATGCATAGAG+TGG 0.663140 tig0020408:+112057 None:intergenic
GGTGGATGATGTGAGTGTTG+AGG 0.663208 tig0020408:-111382 Msa1380900:CDS
CTGACGTAACTCATCAGGAG+TGG 0.672100 tig0020408:+114251 None:intergenic
GCACGATTTGAGTTGCGACA+GGG 0.672420 tig0020408:-114664 Msa1380900:CDS
TGAGCATCCATTATCTGCCG+AGG 0.677131 tig0020408:-112153 Msa1380900:CDS
TTCTTGCATTGAGAAGGGAA+GGG 0.677335 tig0020408:-113144 Msa1380900:CDS
ATATCCGACATGTTTCCAGA+AGG 0.678237 tig0020408:+114075 None:intergenic
CCAGATTCTTGGTCAAAACG+AGG 0.680619 tig0020408:-114448 Msa1380900:CDS
GCGCAAGGGAGAAATAGAAG+AGG 0.680799 tig0020408:-112336 Msa1380900:CDS
TGTGTTGGAAACATTGCTGG+TGG 0.689738 tig0020408:+111632 None:intergenic
TTCGTCGATGATGATTGACT+CGG 0.691243 tig0020408:+113046 None:intergenic
AAAAGTTTCTGCAATCAAGG+AGG 0.697378 tig0020408:+113882 None:intergenic
TAATTTAGAAGTGACCGATG+AGG 0.698604 tig0020408:-113551 Msa1380900:CDS
GGATGCCGATAAGTCAGATG+CGG 0.703609 tig0020408:-111403 Msa1380900:CDS
ATGAAGCAGAAGAAGAAATG+CGG 0.709038 tig0020408:-113114 Msa1380900:CDS
GTCTTGGCTGAGATTCACTG+AGG 0.710997 tig0020408:+111920 None:intergenic
AGTTGATGAAGAAAGGGACA+TGG 0.716294 tig0020408:-112558 Msa1380900:CDS
CAGCCGGATTGACAAGACTG+AGG 0.720198 tig0020408:-113836 Msa1380900:CDS
ATTGATGAAGGTGAATTGAG+CGG 0.728556 tig0020408:+116273 None:intergenic
GAGCTATCAGCATTAATACG+CGG 0.732772 tig0020408:-113670 Msa1380900:CDS
AAGACGGGAAGGGAAAACGG+AGG 0.744098 tig0020408:-112711 Msa1380900:CDS
TAATAATGCCGCTTCCACGG+TGG 0.746076 tig0020408:-113221 Msa1380900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTAATTTTACAATATTTA+AGG + tig0020408:112149-112168 None:intergenic 10.0%
!! TAAATATTGTAAAATTAGTT+AGG - tig0020408:112149-112168 Msa1380900:CDS 10.0%
!! TTGATAAAACAATTAAAACT+GGG + tig0020408:112337-112356 None:intergenic 15.0%
!! TTTGATAAAACAATTAAAAC+TGG + tig0020408:112338-112357 None:intergenic 15.0%
!! CAAAATTCCAAAATTTAATT+GGG + tig0020408:112513-112532 None:intergenic 15.0%
!! TCAAAATTCCAAAATTTAAT+TGG + tig0020408:112514-112533 None:intergenic 15.0%
!! TAAATGATAGAGAACAATAT+AGG - tig0020408:111229-111248 Msa1380900:CDS 20.0%
!! AAAGAACTATAAAGAGAAAA+TGG + tig0020408:111793-111812 None:intergenic 20.0%
!!! TTTATAGTTCTTTTGTGATA+AGG - tig0020408:111800-111819 Msa1380900:CDS 20.0%
!! ACTTATGTAATGAAGAAAAT+AGG + tig0020408:112000-112019 None:intergenic 20.0%
!!! TTCATTACATAAGTTTTGTT+TGG - tig0020408:112006-112025 Msa1380900:CDS 20.0%
!!! TCTCTTCATTTAATTTTCTA+TGG - tig0020408:112091-112110 Msa1380900:CDS 20.0%
!! AAGTGAAAATTGTATAGATT+TGG + tig0020408:112195-112214 None:intergenic 20.0%
!! GTTAATTTCATGATTCTATA+TGG - tig0020408:112406-112425 Msa1380900:CDS 20.0%
!! AGTAAGTATAAAATTCTGAA+AGG - tig0020408:113125-113144 Msa1380900:CDS 20.0%
!!! TTTTGATTTTGATAATCTCT+TGG - tig0020408:113739-113758 Msa1380900:CDS 20.0%
!! AATTAAAGAAGAAAAACTGA+AGG - tig0020408:116130-116149 Msa1380900:intron 20.0%
!! TGAAAATTGAAACTATTGAA+TGG + tig0020408:116425-116444 None:intergenic 20.0%
!!! CAACACTATTTTGTTGATTT+TGG - tig0020408:110923-110942 Msa1380900:three_prime_UTR 25.0%
! AATTACTCTTGTTAATGCAA+CGG + tig0020408:111346-111365 None:intergenic 25.0%
! AAATGACAAGTTGTTAAACA+TGG + tig0020408:111424-111443 None:intergenic 25.0%
! TAAAAAGTGAATTGTCTCTA+GGG + tig0020408:111525-111544 None:intergenic 25.0%
! ATAAAAAGTGAATTGTCTCT+AGG + tig0020408:111526-111545 None:intergenic 25.0%
! CATTGAATAACTAATGTATC+TGG - tig0020408:111549-111568 Msa1380900:CDS 25.0%
!!! GTTAGTTTTGTTAGGTTTAA+AGG - tig0020408:111915-111934 Msa1380900:CDS 25.0%
!! TTGTTAGGTTTAAAGGTTTT+TGG - tig0020408:111922-111941 Msa1380900:CDS 25.0%
! GAAAATTAAATGAAGAGAAG+AGG + tig0020408:112089-112108 None:intergenic 25.0%
! TGAAAATTGTATAGATTTGG+TGG + tig0020408:112192-112211 None:intergenic 25.0%
!! TATACCTTTAGTTTAACCAA+AGG + tig0020408:112378-112397 None:intergenic 25.0%
! CAGATTATAATAAGCAAACA+TGG + tig0020408:112465-112484 None:intergenic 25.0%
!!! ATGGTTTTAACAAAAATGAG+GGG + tig0020408:112719-112738 None:intergenic 25.0%
!!! CATGGTTTTAACAAAAATGA+GGG + tig0020408:112720-112739 None:intergenic 25.0%
!!! TCATGGTTTTAACAAAAATG+AGG + tig0020408:112721-112740 None:intergenic 25.0%
!! TATAAAATTCTGAAAGGAGA+CGG - tig0020408:113131-113150 Msa1380900:CDS 25.0%
!! GATTTGGAAAATGTATTTTC+AGG + tig0020408:113863-113882 None:intergenic 25.0%
!!! ATTTCTGCTTTACTTTTTCT+TGG + tig0020408:114562-114581 None:intergenic 25.0%
! AATTCAATGCTTACTAATCT+AGG - tig0020408:114835-114854 Msa1380900:intron 25.0%
! CAAAAAGAAGAATATAAAGC+AGG - tig0020408:115348-115367 Msa1380900:intron 25.0%
!!! GAATGTTGTTTTTGTATATC+TGG + tig0020408:115440-115459 None:intergenic 25.0%
!!! AAGAAATTTTGGCTCATAAA+AGG - tig0020408:115565-115584 Msa1380900:intron 25.0%
! TGAATTCATTGTTAACATCT+GGG - tig0020408:116231-116250 Msa1380900:intron 25.0%
! AAAACTATCAGCTTGAATAA+AGG + tig0020408:116300-116319 None:intergenic 25.0%
!! AATTTGTGCATTTTCATTGA+AGG - tig0020408:116343-116362 Msa1380900:CDS 25.0%
! TCATCTGAAAATTGTAAATG+TGG - tig0020408:116442-116461 Msa1380900:five_prime_UTR 25.0%
! TGAATGTTGTATCATATGTT+TGG - tig0020408:116483-116502 Msa1380900:five_prime_UTR 25.0%
!! AATCGCCTCATTTAAAATAA+AGG + tig0020408:116512-116531 None:intergenic 25.0%
TTCTTTACGAGGGAATAATT+GGG - tig0020408:111009-111028 Msa1380900:three_prime_UTR 30.0%
AGTCACTGAAATTCAAATCA+TGG + tig0020408:111180-111199 None:intergenic 30.0%
CAATGTAATTCATCGGTATA+TGG + tig0020408:111309-111328 None:intergenic 30.0%
TTAGCAGCAATGTAATTCAT+CGG + tig0020408:111316-111335 None:intergenic 30.0%
! AATTTTGCTTGTTTCATCGT+AGG - tig0020408:111469-111488 Msa1380900:CDS 30.0%
GTGAATTGTCTCCTATAATA+AGG - tig0020408:111592-111611 Msa1380900:CDS 30.0%
TGAAACACAAACAATATAGC+CGG + tig0020408:111670-111689 None:intergenic 30.0%
TATCAACAAGTAAGCTCATA+GGG - tig0020408:111873-111892 Msa1380900:CDS 30.0%
!!! TTGAGTAGGTTAGTTTTGTT+AGG - tig0020408:111907-111926 Msa1380900:CDS 30.0%
!! TAGGTTTAAAGGTTTTTGGA+TGG - tig0020408:111926-111945 Msa1380900:CDS 30.0%
CAAAAGTCTGTTTAGCTAAA+AGG + tig0020408:111965-111984 None:intergenic 30.0%
GTAATGAAGAAAATAGGTCA+AGG + tig0020408:111994-112013 None:intergenic 30.0%
!!! ACATAAGTTTTGTTTGGTCT+AGG - tig0020408:112012-112031 Msa1380900:CDS 30.0%
TAGGTTTGAGTACATTAGTT+TGG - tig0020408:112031-112050 Msa1380900:CDS 30.0%
! TTGAGTACATTAGTTTGGTT+TGG - tig0020408:112036-112055 Msa1380900:CDS 30.0%
GGAAGCTAAACATACAATTA+GGG + tig0020408:112279-112298 None:intergenic 30.0%
TAGTGAGTTATCCAATCTAA+GGG + tig0020408:112300-112319 None:intergenic 30.0%
ATAGTGAGTTATCCAATCTA+AGG + tig0020408:112301-112320 None:intergenic 30.0%
TTTAAGCTTCATAGAACCTT+TGG - tig0020408:112359-112378 Msa1380900:CDS 30.0%
AGAACCTTTGGTTAAACTAA+AGG - tig0020408:112371-112390 Msa1380900:CDS 30.0%
TATATGGAAAACGAGATCTT+GGG - tig0020408:112422-112441 Msa1380900:CDS 30.0%
TTTAATTGGGACAAAGGATT+TGG + tig0020408:112500-112519 None:intergenic 30.0%
CCAAAATTTAATTGGGACAA+AGG + tig0020408:112506-112525 None:intergenic 30.0%
! CCTTTGTCCCAATTAAATTT+TGG - tig0020408:112503-112522 Msa1380900:CDS 30.0%
!!! TGGTTTTAACAAAAATGAGG+GGG + tig0020408:112718-112737 None:intergenic 30.0%
AGAGTGAATATTCAAAAGCA+TGG + tig0020408:112813-112832 None:intergenic 30.0%
ATATTCACTCTAATTTCTCC+AGG - tig0020408:112822-112841 Msa1380900:CDS 30.0%
AGAATTTCATCTTCATCTCT+AGG + tig0020408:112864-112883 None:intergenic 30.0%
! TACTACAGGATTTTCTATTC+AGG - tig0020408:112992-113011 Msa1380900:CDS 30.0%
AACTGAAACAACGAATAGTA+TGG - tig0020408:113043-113062 Msa1380900:CDS 30.0%
! ATAAAATTCTGAAAGGAGAC+GGG - tig0020408:113132-113151 Msa1380900:CDS 30.0%
ACCATCAAGATTATCAGAAA+TGG + tig0020408:113765-113784 None:intergenic 30.0%
! TTTGTCAAAGGTTTGAGATT+TGG + tig0020408:113879-113898 None:intergenic 30.0%
AATTCAGTCATTGAAAAGAG+AGG - tig0020408:113916-113935 Msa1380900:CDS 30.0%
AAAGTGACTTAAACAACACT+GGG - tig0020408:114008-114027 Msa1380900:CDS 30.0%
!! AGTTTGAGTTCTGAAATTAC+TGG - tig0020408:114079-114098 Msa1380900:CDS 30.0%
! GCTTTTGAATTCGAAAAAGA+AGG - tig0020408:114168-114187 Msa1380900:CDS 30.0%
TTATCATCATATGTCTTCGA+AGG + tig0020408:114478-114497 None:intergenic 30.0%
AAAGTAAAGCAGAAATTCAG+AGG - tig0020408:114566-114585 Msa1380900:intron 30.0%
AAGTAAAGCAGAAATTCAGA+GGG - tig0020408:114567-114586 Msa1380900:intron 30.0%
ACTCTTGAGCTTAAAAAGAA+AGG - tig0020408:114591-114610 Msa1380900:intron 30.0%
!! TAAGCATTGAATTCAATGCT+GGG + tig0020408:114828-114847 None:intergenic 30.0%
! CTTAACAGGTTCTTCTTTTA+TGG + tig0020408:114890-114909 None:intergenic 30.0%
CATAAAAGAAGAACCTGTTA+AGG - tig0020408:114888-114907 Msa1380900:intron 30.0%
!! GGCTGAGGAAATTTTAAAAA+AGG - tig0020408:115020-115039 Msa1380900:intron 30.0%
TTTAAAAAAGGCCAAGAATC+TGG - tig0020408:115032-115051 Msa1380900:intron 30.0%
CAAGTGAAAATCTCACAAAA+AGG - tig0020408:115214-115233 Msa1380900:intron 30.0%
TTCAGTTAATTCATCTCAAG+CGG - tig0020408:115371-115390 Msa1380900:intron 30.0%
!! TGTTTTTGTATATCTGGTCT+TGG + tig0020408:115434-115453 None:intergenic 30.0%
! AGTCACTTCTTTTCTTCTTT+GGG + tig0020408:115466-115485 None:intergenic 30.0%
AAATTTCTTGACGCAAAGAA+AGG + tig0020408:115554-115573 None:intergenic 30.0%
! TTCTTTGCGTCAAGAAATTT+TGG - tig0020408:115554-115573 Msa1380900:intron 30.0%
!!! AATTTTGGCTCATAAAAGGA+AGG - tig0020408:115569-115588 Msa1380900:intron 30.0%
TTGAACAACATTTGATGTGT+TGG + tig0020408:115721-115740 None:intergenic 30.0%
TAAAGAAGAAAAACTGAAGG+CGG - tig0020408:116133-116152 Msa1380900:intron 30.0%
! CAGCTTCTTTTCATACATTT+TGG + tig0020408:116213-116232 None:intergenic 30.0%
CTGAATTCATTGTTAACATC+TGG - tig0020408:116230-116249 Msa1380900:intron 30.0%
!! TGTAAATGTGGTTCTAAACA+TGG - tig0020408:116454-116473 Msa1380900:five_prime_UTR 30.0%
!!! GGTGTCCTTTATTTTAAATG+AGG - tig0020408:116504-116523 Msa1380900:five_prime_UTR 30.0%
TAGTAGAAGAGGATTAACGA+AGG + tig0020408:110894-110913 None:intergenic 35.0%
CAATTATTCCCTCGTAAAGA+AGG + tig0020408:111010-111029 None:intergenic 35.0%
CTTCTTTACGAGGGAATAAT+TGG - tig0020408:111008-111027 Msa1380900:three_prime_UTR 35.0%
ATTGATGAAGGTGAATTGAG+CGG + tig0020408:111065-111084 None:intergenic 35.0%
TAGCACAATCGAAGAAGAAT+GGG + tig0020408:111102-111121 None:intergenic 35.0%
TTAGCACAATCGAAGAAGAA+TGG + tig0020408:111103-111122 None:intergenic 35.0%
! GTAACAGAGTCTTTGATGAT+TGG + tig0020408:111150-111169 None:intergenic 35.0%
GGGTAGTAAGATTCAAAATC+TGG + tig0020408:111505-111524 None:intergenic 35.0%
TCTCCTATAATAAGGAACGA+AGG - tig0020408:111600-111619 Msa1380900:CDS 35.0%
CTACCTTCGTTCCTTATTAT+AGG + tig0020408:111606-111625 None:intergenic 35.0%
! GAGAATCAATTTTTCATGCC+CGG - tig0020408:111648-111667 Msa1380900:CDS 35.0%
GAAACACAAACAATATAGCC+GGG + tig0020408:111669-111688 None:intergenic 35.0%
AGGTCTTTAGATAAGTGATG+AGG - tig0020408:111820-111839 Msa1380900:CDS 35.0%
AGGTCTATAGATAAGTGATG+AGG - tig0020408:111849-111868 Msa1380900:CDS 35.0%
CTATCAACAAGTAAGCTCAT+AGG - tig0020408:111872-111891 Msa1380900:CDS 35.0%
!! AAGGTTTTTGGATGGTCTAA+AGG - tig0020408:111934-111953 Msa1380900:CDS 35.0%
GCTAAACATACAATTAGGGA+CGG + tig0020408:112275-112294 None:intergenic 35.0%
GGGAAGCTAAACATACAATT+AGG + tig0020408:112280-112299 None:intergenic 35.0%
! ATGTTTAGCTTCCCTTAGAT+TGG - tig0020408:112286-112305 Msa1380900:CDS 35.0%
CTATATGGAAAACGAGATCT+TGG - tig0020408:112421-112440 Msa1380900:CDS 35.0%
AAGTTGTACCCAACAAAGAA+TGG - tig0020408:112583-112602 Msa1380900:CDS 35.0%
GAAATTCTCAACCAGATTCT+TGG - tig0020408:112876-112895 Msa1380900:CDS 35.0%
! AACGAGGAACTTCTTTTATC+AGG - tig0020408:112903-112922 Msa1380900:CDS 35.0%
AATAGTATGGCTGTTGATGT+GGG - tig0020408:113056-113075 Msa1380900:CDS 35.0%
!! CCTTGAAAGCTTTTAAGAGA+GGG - tig0020408:113168-113187 Msa1380900:CDS 35.0%
!! ATGCTTTGGAAATTCAGCTA+AGG - tig0020408:113213-113232 Msa1380900:CDS 35.0%
AAAGACATTTCTGTTGAGTC+TGG - tig0020408:113290-113309 Msa1380900:CDS 35.0%
AAAGTCAGCAAACTTGAGTT+TGG - tig0020408:113418-113437 Msa1380900:CDS 35.0%
AAAAGTTTCTGCAATCAAGG+AGG + tig0020408:113456-113475 None:intergenic 35.0%
TGCAAAAGTTTCTGCAATCA+AGG + tig0020408:113459-113478 None:intergenic 35.0%
GGTTGTTGCTATGAAAAAGA+AGG - tig0020408:113520-113539 Msa1380900:CDS 35.0%
AAAAATCCTAGAGAAGCAAC+TGG - tig0020408:113601-113620 Msa1380900:CDS 35.0%
GCCATTTCTGATAATCTTGA+TGG - tig0020408:113761-113780 Msa1380900:CDS 35.0%
TAATTTAGAAGTGACCGATG+AGG - tig0020408:113784-113803 Msa1380900:CDS 35.0%
AGGTAATACTGAAGAAGCAA+TGG - tig0020408:113958-113977 Msa1380900:CDS 35.0%
AGCAATGGCGATATTGAAAA+AGG - tig0020408:113973-113992 Msa1380900:CDS 35.0%
GAAAGTGACTTAAACAACAC+TGG - tig0020408:114007-114026 Msa1380900:CDS 35.0%
TTGCAAAAAGTTACTCCTGT+TGG - tig0020408:114052-114071 Msa1380900:CDS 35.0%
TGCAAAAAGTTACTCCTGTT+GGG - tig0020408:114053-114072 Msa1380900:CDS 35.0%
! AAATAATAATGCCGCTTCCA+CGG - tig0020408:114111-114130 Msa1380900:CDS 35.0%
ATGAAGCAGAAGAAGAAATG+CGG - tig0020408:114221-114240 Msa1380900:CDS 35.0%
AGCATATCTTTCACTCCTTA+CGG - tig0020408:114402-114421 Msa1380900:CDS 35.0%
GGATTGTTCGAAGATTTAGA+AGG + tig0020408:114457-114476 None:intergenic 35.0%
!! CTCAGAAAAGTATCATCAAC+TGG + tig0020408:114508-114527 None:intergenic 35.0%
!!! CCAATGTTTTGGCCATTTTA+AGG + tig0020408:114663-114682 None:intergenic 35.0%
CCTTAAAATGGCCAAAACAT+TGG - tig0020408:114660-114679 Msa1380900:CDS 35.0%
! TATCTTGGCTTCCAATGTTT+TGG + tig0020408:114674-114693 None:intergenic 35.0%
!! TGCTCTGAAGAATAATGTAC+AGG - tig0020408:114705-114724 Msa1380900:CDS 35.0%
GAAGAATAATGTACAGGTTG+AGG - tig0020408:114711-114730 Msa1380900:CDS 35.0%
!! GTAAGCATTGAATTCAATGC+TGG + tig0020408:114829-114848 None:intergenic 35.0%
CAATGCTTACTAATCTAGGA+TGG - tig0020408:114839-114858 Msa1380900:intron 35.0%
! AGGTTCTTCTTTTATGGTCA+CGG + tig0020408:114884-114903 None:intergenic 35.0%
!! AGATTTTGAGAGCCAAAACA+AGG - tig0020408:115068-115087 Msa1380900:intron 35.0%
!!! CGGAACAGATTTTTTATCCT+TGG + tig0020408:115112-115131 None:intergenic 35.0%
ATGCTCATCATGTGCAAAAT+GGG + tig0020408:115169-115188 None:intergenic 35.0%
TCAGTTAATTCATCTCAAGC+GGG - tig0020408:115372-115391 Msa1380900:intron 35.0%
! CAGTCACTTCTTTTCTTCTT+TGG + tig0020408:115467-115486 None:intergenic 35.0%
!! ACATTTGACTGGTTTGTGTT+TGG + tig0020408:115504-115523 None:intergenic 35.0%
! AATCTGGAACAACATTTGAC+TGG + tig0020408:115515-115534 None:intergenic 35.0%
!!! TCACAGTCTCTTGTTTTTCT+GGG + tig0020408:116055-116074 None:intergenic 35.0%
!!! TTCACAGTCTCTTGTTTTTC+TGG + tig0020408:116056-116075 None:intergenic 35.0%
! GCTGAATTTTCTCTTGGTTA+GGG + tig0020408:116100-116119 None:intergenic 35.0%
! AGCTGAATTTTCTCTTGGTT+AGG + tig0020408:116101-116120 None:intergenic 35.0%
!! CTTCTAGCTGAATTTTCTCT+TGG + tig0020408:116106-116125 None:intergenic 35.0%
ACTATCAGCTTGAATAAAGG+AGG + tig0020408:116297-116316 None:intergenic 35.0%
! TTGTGCATTTTCATTGAAGG+AGG - tig0020408:116346-116365 Msa1380900:CDS 35.0%
! TGTTTCTGCTGTAGTAGAAG+AGG + tig0020408:110905-110924 None:intergenic 40.0%
CAGAAGATGTTAGCGAAGAT+CGG - tig0020408:110971-110990 Msa1380900:three_prime_UTR 40.0%
AGAAGATGTTAGCGAAGATC+GGG - tig0020408:110972-110991 Msa1380900:three_prime_UTR 40.0%
ATTCACCTTCATCAATCGCA+AGG - tig0020408:111069-111088 Msa1380900:three_prime_UTR 40.0%
GTTAACCTTGCGATTGATGA+AGG + tig0020408:111077-111096 None:intergenic 40.0%
AGCACAATCGAAGAAGAATG+GGG + tig0020408:111101-111120 None:intergenic 40.0%
TCCTTTAACGTAGCAGATCA+GGG - tig0020408:111282-111301 Msa1380900:CDS 40.0%
CACCTTAATGCATTGCATGT+AGG - tig0020408:111690-111709 Msa1380900:CDS 40.0%
CTCCTACATGCAATGCATTA+AGG + tig0020408:111695-111714 None:intergenic 40.0%
TAATGCATTGCATGTAGGAG+TGG - tig0020408:111695-111714 Msa1380900:CDS 40.0%
TTGCATGTAGGAGTGGAAAT+AGG - tig0020408:111702-111721 Msa1380900:CDS 40.0%
TAGGTTTGATGTATGGAGTC+AGG + tig0020408:111755-111774 None:intergenic 40.0%
CACGTGTTAGGTTTGATGTA+TGG + tig0020408:111762-111781 None:intergenic 40.0%
GATAAGTGATGAGGCTATCA+AGG - tig0020408:111829-111848 Msa1380900:CDS 40.0%
GGGTCGATATATACTTGAGT+AGG - tig0020408:111893-111912 Msa1380900:CDS 40.0%
TCCTGAAAGAGTAAGCCATA+AGG - tig0020408:112224-112243 Msa1380900:CDS 40.0%
ACCTTATGGCTTACTCTTTC+AGG + tig0020408:112228-112247 None:intergenic 40.0%
AGTAAGCCATAAGGTCATTG+AGG - tig0020408:112233-112252 Msa1380900:CDS 40.0%
!! TTTTTCAGCACCACTGTAGA+AGG - tig0020408:112540-112559 Msa1380900:CDS 40.0%
ACGCAAAGCCATTCTTTGTT+GGG + tig0020408:112594-112613 None:intergenic 40.0%
CAAGGTTCACATATACGTAC+AGG + tig0020408:112632-112651 None:intergenic 40.0%
ACCTTGTAAGAAGCTAGAAG+AGG - tig0020408:112646-112665 Msa1380900:CDS 40.0%
!! CAAGCACAGGTTGATTATCA+TGG + tig0020408:112738-112757 None:intergenic 40.0%
AAGCAATCAACCAGTGACAA+AGG - tig0020408:112927-112946 Msa1380900:CDS 40.0%
GCATCTTCTTCAAGTACTAC+AGG - tig0020408:112978-112997 Msa1380900:CDS 40.0%
GAATAGTATGGCTGTTGATG+TGG - tig0020408:113055-113074 Msa1380900:CDS 40.0%
!! GCCTTGAAAGCTTTTAAGAG+AGG - tig0020408:113167-113186 Msa1380900:CDS 40.0%
CCCTCTCTTAAAAGCTTTCA+AGG + tig0020408:113171-113190 None:intergenic 40.0%
!! GAAAGCTTTTAAGAGAGGGA+AGG - tig0020408:113172-113191 Msa1380900:CDS 40.0%
GGAAATTCAGCTAAGGAAAG+CGG - tig0020408:113220-113239 Msa1380900:CDS 40.0%
ATATCCGACATGTTTCCAGA+AGG + tig0020408:113263-113282 None:intergenic 40.0%
TCCTCAGACTGGTAAAGATA+AGG - tig0020408:113331-113350 Msa1380900:CDS 40.0%
TCCTTATCTTTACCAGTCTG+AGG + tig0020408:113335-113354 None:intergenic 40.0%
TACTTCAGAACTTCAAGAGC+TGG - tig0020408:113361-113380 Msa1380900:CDS 40.0%
ACTTCAGAACTTCAAGAGCT+GGG - tig0020408:113362-113381 Msa1380900:CDS 40.0%
TCAGCAAACTTGAGTTTGGA+GGG - tig0020408:113422-113441 Msa1380900:CDS 40.0%
! GCAGAAACTTTTGCAAAGAC+AGG - tig0020408:113464-113483 Msa1380900:CDS 40.0%
TGCAAAGACAGGTGAAGAAA+AGG - tig0020408:113475-113494 Msa1380900:CDS 40.0%
GCAAAGACAGGTGAAGAAAA+GGG - tig0020408:113476-113495 Msa1380900:CDS 40.0%
TAAGCTTGCAGAAGCTAAAG+AGG - tig0020408:113565-113584 Msa1380900:CDS 40.0%
GAGCTATCAGCATTAATACG+CGG - tig0020408:113665-113684 Msa1380900:CDS 40.0%
TGCTCATGATCATGCAGATT+TGG + tig0020408:113716-113735 None:intergenic 40.0%
AATCTGCATGATCATGAGCA+TGG - tig0020408:113716-113735 Msa1380900:CDS 40.0%
TAGCAACGCTTCTTTGTCAA+AGG + tig0020408:113891-113910 None:intergenic 40.0%
! GAACTCAAACTTTTCCCAAC+AGG + tig0020408:114070-114089 None:intergenic 40.0%
!! TGAATCATCAACCGGCTTTT+TGG + tig0020408:114142-114161 None:intergenic 40.0%
GCTCTCTTTGAATCATCAAC+CGG + tig0020408:114150-114169 None:intergenic 40.0%
AGAAGGTTCTTGCATTGAGA+AGG - tig0020408:114185-114204 Msa1380900:CDS 40.0%
GAAGGTTCTTGCATTGAGAA+GGG - tig0020408:114186-114205 Msa1380900:CDS 40.0%
TTCTTGCATTGAGAAGGGAA+GGG - tig0020408:114191-114210 Msa1380900:CDS 40.0%
ATTGAGAAGGGAAGGGAAAA+TGG - tig0020408:114198-114217 Msa1380900:CDS 40.0%
TTCGTCGATGATGATTGACT+CGG + tig0020408:114292-114311 None:intergenic 40.0%
CAATCATCATCGACGAATAC+TGG - tig0020408:114295-114314 Msa1380900:CDS 40.0%
GTAAGGAGTGAAAGATATGC+TGG + tig0020408:114403-114422 None:intergenic 40.0%
! TTTAAGACGGGAAGGGAAAA+CGG - tig0020408:114621-114640 Msa1380900:intron 40.0%
TGCAGAGGAAGTCCTTAAAA+TGG - tig0020408:114648-114667 Msa1380900:CDS 40.0%
AGCATCCATCTCTTCTATCT+TGG + tig0020408:114689-114708 None:intergenic 40.0%
! CTTCAATTCTCCAGTTGATG+TGG - tig0020408:114753-114772 Msa1380900:CDS 40.0%
!! ATGTGGCAGTTGATGAAGAA+AGG - tig0020408:114770-114789 Msa1380900:CDS 40.0%
!! TGTGGCAGTTGATGAAGAAA+GGG - tig0020408:114771-114790 Msa1380900:CDS 40.0%
!! AGTTGATGAAGAAAGGGACA+TGG - tig0020408:114777-114796 Msa1380900:CDS 40.0%
! GCTTACTAATCTAGGATGGA+AGG - tig0020408:114843-114862 Msa1380900:intron 40.0%
! AATCTAGGATGGAAGGATGA+AGG - tig0020408:114850-114869 Msa1380900:intron 40.0%
! GGTTCTTCTTTTATGGTCAC+GGG + tig0020408:114883-114902 None:intergenic 40.0%
GTACTAGTAGCTTCCTTAAC+AGG + tig0020408:114904-114923 None:intergenic 40.0%
CTAGTACTGTCACAACTTCA+AGG - tig0020408:114917-114936 Msa1380900:intron 40.0%
GTCACAACTTCAAGGAACAA+AGG - tig0020408:114925-114944 Msa1380900:intron 40.0%
! GAGAACTCTTAGCGTTGAAA+AGG - tig0020408:114959-114978 Msa1380900:intron 40.0%
! ACTCTTAGCGTTGAAAAGGA+AGG - tig0020408:114963-114982 Msa1380900:intron 40.0%
GCTCTCAAAATCTTCCAGTT+GGG + tig0020408:115061-115080 None:intergenic 40.0%
!! TCAGCAACAAGTCCTTGTTT+TGG + tig0020408:115083-115102 None:intergenic 40.0%
TTTCCGTGAGATGATTCAGA+CGG + tig0020408:115132-115151 None:intergenic 40.0%
GATGCTCATCATGTGCAAAA+TGG + tig0020408:115170-115189 None:intergenic 40.0%
CATATGCCAGATCTACTTAC+TGG - tig0020408:115288-115307 Msa1380900:intron 40.0%
CCATTACCAGTAAGTAGATC+TGG + tig0020408:115297-115316 None:intergenic 40.0%
CCAGATCTACTTACTGGTAA+TGG - tig0020408:115294-115313 Msa1380900:intron 40.0%
TGTTCCAGATTATGCTTCTC+AGG - tig0020408:115524-115543 Msa1380900:intron 40.0%
!! GCAGTTGCTTTGAAAAGAGA+AGG - tig0020408:115591-115610 Msa1380900:intron 40.0%
AAGGAAAACTAACAGAAGCC+AGG - tig0020408:115610-115629 Msa1380900:intron 40.0%
AGGAAAACTAACAGAAGCCA+GGG - tig0020408:115611-115630 Msa1380900:intron 40.0%
TGATGTGTTGGAAACATTGC+TGG + tig0020408:115709-115728 None:intergenic 40.0%
ACTCCTGTTGCAACTTGAAA+CGG + tig0020408:115794-115813 None:intergenic 40.0%
AAGCAGAAGCTGAGTTAGAA+CGG - tig0020408:115868-115887 Msa1380900:intron 40.0%
TCAGAGCAGATAAGAGTTGA+GGG + tig0020408:115989-116008 None:intergenic 40.0%
TTCAGAGCAGATAAGAGTTG+AGG + tig0020408:115990-116009 None:intergenic 40.0%
!! TTATCTGCTCTGAAAGCTAC+TGG - tig0020408:115996-116015 Msa1380900:intron 40.0%
! TTGGTTAGGGTTCTCGATTT+TGG + tig0020408:116087-116106 None:intergenic 40.0%
! AAGTCAATGCTGCTACTTCA+AGG - tig0020408:116263-116282 Msa1380900:intron 40.0%
ACAAAACGAGTGCACGATTC+CGG + tig0020408:110836-110855 None:intergenic 45.0%
CACCAAAGCCTTCTTTACGA+GGG - tig0020408:110999-111018 Msa1380900:three_prime_UTR 45.0%
TTCCCTCGTAAAGAAGGCTT+TGG + tig0020408:111004-111023 None:intergenic 45.0%
GTTGATGCCTCTAATTGCCA+GGG - tig0020408:111034-111053 Msa1380900:three_prime_UTR 45.0%
CACAATCGAAGAAGAATGGG+GGG + tig0020408:111099-111118 None:intergenic 45.0%
GCACAATCGAAGAAGAATGG+GGG + tig0020408:111100-111119 None:intergenic 45.0%
TACGTTAAAGGAGGCAGGTA+AGG + tig0020408:111274-111293 None:intergenic 45.0%
CTGATCTGCTACGTTAAAGG+AGG + tig0020408:111283-111302 None:intergenic 45.0%
CTCCTTTAACGTAGCAGATC+AGG - tig0020408:111281-111300 Msa1380900:CDS 45.0%
ACCCTGATCTGCTACGTTAA+AGG + tig0020408:111286-111305 None:intergenic 45.0%
ATGGATCAAGCTCACGTGTT+AGG + tig0020408:111774-111793 None:intergenic 45.0%
ACCACTCCTCAATGACCTTA+TGG + tig0020408:112242-112261 None:intergenic 45.0%
GAAAACGAGATCTTGGGTAC+TGG - tig0020408:112428-112447 Msa1380900:CDS 45.0%
CACGCAAAGCCATTCTTTGT+TGG + tig0020408:112595-112614 None:intergenic 45.0%
! CAACAAAGAATGGCTTTGCG+TGG - tig0020408:112593-112612 Msa1380900:CDS 45.0%
!! GCCTCTTCTAGCTTCTTACA+AGG + tig0020408:112650-112669 None:intergenic 45.0%
ACTCTAACACAAGCAAGCAC+AGG + tig0020408:112751-112770 None:intergenic 45.0%
!! CCTCGTTTTGACCAAGAATC+TGG + tig0020408:112890-112909 None:intergenic 45.0%
CCAGATTCTTGGTCAAAACG+AGG - tig0020408:112887-112906 Msa1380900:CDS 45.0%
! GTTACGTCAGCAAGCTTTAG+CGG - tig0020408:113097-113116 Msa1380900:CDS 45.0%
CGGAAAAAGTTGTTGCCTTC+TGG - tig0020408:113245-113264 Msa1380900:CDS 45.0%
! GTTGCCTTCTGGAAACATGT+CGG - tig0020408:113256-113275 Msa1380900:CDS 45.0%
ACAAAGTCACTTCCTCAGAC+TGG - tig0020408:113320-113339 Msa1380900:CDS 45.0%
GTCAGCAAACTTGAGTTTGG+AGG - tig0020408:113421-113440 Msa1380900:CDS 45.0%
! CAACCTCAGTCTTGTCAATC+CGG + tig0020408:113505-113524 None:intergenic 45.0%
GTTCTTCCAGTTGCTTCTCT+AGG + tig0020408:113610-113629 None:intergenic 45.0%
AGAGAAGCAACTGGAAGAAC+AGG - tig0020408:113610-113629 Msa1380900:CDS 45.0%
ATCAGCATTAATACGCGGCA+TGG - tig0020408:113670-113689 Msa1380900:CDS 45.0%
AGTGACCGATGAGGATTTGA+TGG - tig0020408:113793-113812 Msa1380900:CDS 45.0%
AGGGTCCATCAAATCCTCAT+CGG + tig0020408:113801-113820 None:intergenic 45.0%
GCTCTTAATCAAAAGCGAGC+AGG - tig0020408:113938-113957 Msa1380900:CDS 45.0%
GTTCTTGCATTGAGAAGGGA+AGG - tig0020408:114190-114209 Msa1380900:CDS 45.0%
AGTTCTTGAGCATCAGCTGA+TGG - tig0020408:114252-114271 Msa1380900:CDS 45.0%
GAGTAGAAGTCCTCTAGTTG+AGG - tig0020408:114336-114355 Msa1380900:CDS 45.0%
AGAAGTCCTCTAGTTGAGGA+AGG - tig0020408:114340-114359 Msa1380900:CDS 45.0%
TCTTTCACTCCTTACGGACT+TGG - tig0020408:114408-114427 Msa1380900:CDS 45.0%
CTTTCACTCCTTACGGACTT+GGG - tig0020408:114409-114428 Msa1380900:CDS 45.0%
!! GAAAGGCCCTTGCTTTAAGA+CGG - tig0020408:114608-114627 Msa1380900:intron 45.0%
!! AAAGGCCCTTGCTTTAAGAC+GGG - tig0020408:114609-114628 Msa1380900:intron 45.0%
GGAAGCCAAGATAGAAGAGA+TGG - tig0020408:114681-114700 Msa1380900:CDS 45.0%
TCATCAACTGCCACATCAAC+TGG + tig0020408:114766-114785 None:intergenic 45.0%
! GGACATGGTTGTTTCAGAAG+AGG - tig0020408:114792-114811 Msa1380900:intron 45.0%
!! AAAGGAAGGCACTTGCTTTG+AGG - tig0020408:114977-114996 Msa1380900:intron 45.0%
GGCTCTCAAAATCTTCCAGT+TGG + tig0020408:115062-115081 None:intergenic 45.0%
CTTGTTGCTGAATGCATCCA+AGG - tig0020408:115092-115111 Msa1380900:intron 45.0%
GTTCCGTCTGAATCATCTCA+CGG - tig0020408:115126-115145 Msa1380900:intron 45.0%
TGTGCAAAATGGGAGTTTGC+AGG + tig0020408:115159-115178 None:intergenic 45.0%
! TTCACTTGAAGCACTCACCT+CGG + tig0020408:115202-115221 None:intergenic 45.0%
ATTGCTCATAGCTCCTCAAC+TGG - tig0020408:115255-115274 Msa1380900:intron 45.0%
GATCTGGCATATGCATAGAG+TGG + tig0020408:115281-115300 None:intergenic 45.0%
GAGGAGTCCAAAGGAATAGT+AGG + tig0020408:115399-115418 None:intergenic 45.0%
AGATTCACTGAGGAGTCCAA+AGG + tig0020408:115408-115427 None:intergenic 45.0%
! TCGTCCTGAGAAGCATAATC+TGG + tig0020408:115531-115550 None:intergenic 45.0%
CAACCTCTTCTCTAACAGCT+TGG + tig0020408:115652-115671 None:intergenic 45.0%
CAAGCTGTTAGAGAAGAGGT+TGG - tig0020408:115650-115669 Msa1380900:intron 45.0%
TTAGAGAAGAGGTTGGAGGA+TGG - tig0020408:115657-115676 Msa1380900:intron 45.0%
TGTGTTGGAAACATTGCTGG+TGG + tig0020408:115706-115725 None:intergenic 45.0%
AACGTCAAGCCCTAAAGCTA+CGG - tig0020408:115826-115845 Msa1380900:intron 45.0%
AGCAGAAGCTGAGTTAGAAC+GGG - tig0020408:115869-115888 Msa1380900:intron 45.0%
AAAGGCAATTGAAGCGCAGT+TGG - tig0020408:115893-115912 Msa1380900:intron 45.0%
ATCCACCGCATCTGACTTAT+CGG + tig0020408:115940-115959 None:intergenic 45.0%
!! AGGGTTCTCGATTTTGGCAA+CGG + tig0020408:116081-116100 None:intergenic 45.0%
!! GCGGTTAGTTTGAAACGATC+AGG - tig0020408:116152-116171 Msa1380900:intron 45.0%
AGGAAAACAAGCTGAAGCCT+TGG - tig0020408:116172-116191 Msa1380900:intron 45.0%
ATCACTCGTCGTGCAAGAAC+CGG - tig0020408:110814-110833 Msa1380900:three_prime_UTR 50.0%
! CCTCGTAAAGAAGGCTTTGG+TGG + tig0020408:111001-111020 None:intergenic 50.0%
CCACCAAAGCCTTCTTTACG+AGG - tig0020408:110998-111017 Msa1380900:three_prime_UTR 50.0%
CGTTGATGCCTCTAATTGCC+AGG - tig0020408:111033-111052 Msa1380900:three_prime_UTR 50.0%
GGAACAACCCTGGCAATTAG+AGG + tig0020408:111044-111063 None:intergenic 50.0%
TGAATTGAGCGGAACAACCC+TGG + tig0020408:111054-111073 None:intergenic 50.0%
TCTGCTACGTTAAAGGAGGC+AGG + tig0020408:111279-111298 None:intergenic 50.0%
GCCATAAGGTCATTGAGGAG+TGG - tig0020408:112238-112257 Msa1380900:CDS 50.0%
!! ACGAGATCTTGGGTACTGGA+AGG - tig0020408:112432-112451 Msa1380900:CDS 50.0%
!! AGATCTTGGGTACTGGAAGG+TGG - tig0020408:112435-112454 Msa1380900:CDS 50.0%
! AGCACCACTGTAGAAGGTGT+GGG - tig0020408:112546-112565 Msa1380900:CDS 50.0%
! AGGTGTGGGGGTCTATTTTG+CGG - tig0020408:112560-112579 Msa1380900:CDS 50.0%
! AAGAATGGCTTTGCGTGGAC+AGG - tig0020408:112598-112617 Msa1380900:CDS 50.0%
! AGAATGGCTTTGCGTGGACA+GGG - tig0020408:112599-112618 Msa1380900:CDS 50.0%
!! AGCACGATTTGAGTTGCGAC+AGG - tig0020408:112670-112689 Msa1380900:CDS 50.0%
!! GCACGATTTGAGTTGCGACA+GGG - tig0020408:112671-112690 Msa1380900:CDS 50.0%
!! GGTGCTGATTTCAAGCTTCC+TGG + tig0020408:112843-112862 None:intergenic 50.0%
ACCAGTGACAAAGGTCGTAG+TGG - tig0020408:112936-112955 Msa1380900:CDS 50.0%
ATGCAGCGCTAACTGATCTC+TGG + tig0020408:112962-112981 None:intergenic 50.0%
ACGTAACTCATCAGGAGTGG+TGG + tig0020408:113084-113103 None:intergenic 50.0%
CTGACGTAACTCATCAGGAG+TGG + tig0020408:113087-113106 None:intergenic 50.0%
! GCTTGCTGACGTAACTCATC+AGG + tig0020408:113092-113111 None:intergenic 50.0%
GAAAGGAGACGGGAAATCTG+AGG - tig0020408:113142-113161 Msa1380900:CDS 50.0%
TGAGAGGCAAGCAGATGCTT+TGG - tig0020408:113199-113218 Msa1380900:CDS 50.0%
TTCAGCTAAGGAAAGCGGCT+CGG - tig0020408:113225-113244 Msa1380900:CDS 50.0%
CAGAACTTCAAGAGCTGGGA+TGG - tig0020408:113366-113385 Msa1380900:CDS 50.0%
AGAGCTGGGATGGTCTGATT+TGG - tig0020408:113376-113395 Msa1380900:CDS 50.0%
GCTCTAACGTTGAAGCGTGA+GGG - tig0020408:113542-113561 Msa1380900:CDS 50.0%
GAAGAACAGGAACTCCTTGC+TGG - tig0020408:113623-113642 Msa1380900:CDS 50.0%
CAGAATCTTCAGCACCAGCA+AGG + tig0020408:113640-113659 None:intergenic 50.0%
! TTGATGGACCCTGAGTTAGC+TGG - tig0020408:113809-113828 Msa1380900:CDS 50.0%
! CCAAAGCACCAGCTAACTCA+GGG + tig0020408:113820-113839 None:intergenic 50.0%
! TCCAAAGCACCAGCTAACTC+AGG + tig0020408:113821-113840 None:intergenic 50.0%
!! AGCTGGTGCTTTGGAATCAC+TGG - tig0020408:113826-113845 Msa1380900:CDS 50.0%
!! GCTGGTGCTTTGGAATCACT+GGG - tig0020408:113827-113846 Msa1380900:CDS 50.0%
!! GTGCTTTGGAATCACTGGGT+TGG - tig0020408:113831-113850 Msa1380900:CDS 50.0%
! TAATAATGCCGCTTCCACGG+TGG - tig0020408:114114-114133 Msa1380900:CDS 50.0%
TGAGCATCAGCTGATGGAGA+TGG - tig0020408:114258-114277 Msa1380900:CDS 50.0%
CCACTTCCTTCCTCAACTAG+AGG + tig0020408:114349-114368 None:intergenic 50.0%
CCTCTAGTTGAGGAAGGAAG+TGG - tig0020408:114346-114365 Msa1380900:CDS 50.0%
CATTCCAACCCAAGTCCGTA+AGG + tig0020408:114420-114439 None:intergenic 50.0%
CCCTTCCCGTCTTAAAGCAA+GGG + tig0020408:114617-114636 None:intergenic 50.0%
!! CCCTTGCTTTAAGACGGGAA+GGG - tig0020408:114614-114633 Msa1380900:intron 50.0%
TCCCTTCCCGTCTTAAAGCA+AGG + tig0020408:114618-114637 None:intergenic 50.0%
GCGCAAGGGAGAAATAGAAG+AGG - tig0020408:114999-115018 Msa1380900:intron 50.0%
GGGAGAAATAGAAGAGGCTG+AGG - tig0020408:115005-115024 Msa1380900:intron 50.0%
CAGTTGGGCTTCCAGATTCT+TGG + tig0020408:115046-115065 None:intergenic 50.0%
CAAGAATCTGGAAGCCCAAC+TGG - tig0020408:115044-115063 Msa1380900:intron 50.0%
TGAGCATCCATTATCTGCCG+AGG - tig0020408:115182-115201 Msa1380900:intron 50.0%
ATGCATAGAGTGGCCAGTTG+AGG + tig0020408:115271-115290 None:intergenic 50.0%
AGCGGGTCCTACTATTCCTT+TGG - tig0020408:115389-115408 Msa1380900:intron 50.0%
GTCTTGGCTGAGATTCACTG+AGG + tig0020408:115418-115437 None:intergenic 50.0%
AGGCCAAGCTGTTAGAGAAG+AGG - tig0020408:115646-115665 Msa1380900:intron 50.0%
GCTGTTAGAGAAGAGGTTGG+AGG - tig0020408:115653-115672 Msa1380900:intron 50.0%
TTGCTGGTGGAGACAGTGTT+TGG + tig0020408:115693-115712 None:intergenic 50.0%
AACGGCTTTGCAGCAGCATT+CGG + tig0020408:115759-115778 None:intergenic 50.0%
! GCCATCTCTCCGTAGCTTTA+GGG + tig0020408:115838-115857 None:intergenic 50.0%
CAGCTTCTGCTTCCTCTGTT+CGG + tig0020408:115860-115879 None:intergenic 50.0%
AGCTGAGTTAGAACGGGCAA+AGG - tig0020408:115875-115894 Msa1380900:intron 50.0%
GGATGCCGATAAGTCAGATG+CGG - tig0020408:115932-115951 Msa1380900:intron 50.0%
! GGTGGATGATGTGAGTGTTG+AGG - tig0020408:115953-115972 Msa1380900:intron 50.0%
!! GGGTTCTCGATTTTGGCAAC+GGG + tig0020408:116080-116099 None:intergenic 50.0%
AGGAGGCAGGTAAGGTTGCA+CGG + tig0020408:111266-111285 None:intergenic 55.0%
CAGCACCACTGTAGAAGGTG+TGG - tig0020408:112545-112564 Msa1380900:CDS 55.0%
! GCACCACTGTAGAAGGTGTG+GGG - tig0020408:112547-112566 Msa1380900:CDS 55.0%
! CACCACTGTAGAAGGTGTGG+GGG - tig0020408:112548-112567 Msa1380900:CDS 55.0%
GCCACTACGACCTTTGTCAC+TGG + tig0020408:112940-112959 None:intergenic 55.0%
AGAGAGGGAAGGAGCTTGAG+AGG - tig0020408:113183-113202 Msa1380900:CDS 55.0%
CAGGTGAAGAAAAGGGCAGC+CGG - tig0020408:113483-113502 Msa1380900:CDS 55.0%
CAGCCGGATTGACAAGACTG+AGG - tig0020408:113499-113518 Msa1380900:CDS 55.0%
! GGCTCTAACGTTGAAGCGTG+AGG - tig0020408:113541-113560 Msa1380900:CDS 55.0%
CCCTGAGTTAGCTGGTGCTT+TGG - tig0020408:113817-113836 Msa1380900:CDS 55.0%
!!! TTTTGGTGCCACCGTGGAAG+CGG + tig0020408:114125-114144 None:intergenic 55.0%
GACTTCTACTCGCTGCATGC+AGG + tig0020408:114327-114346 None:intergenic 55.0%
CACTCCTTACGGACTTGGGT+TGG - tig0020408:114413-114432 Msa1380900:CDS 55.0%
!! GCCCTTGCTTTAAGACGGGA+AGG - tig0020408:114613-114632 Msa1380900:intron 55.0%
AAGACGGGAAGGGAAAACGG+AGG - tig0020408:114624-114643 Msa1380900:intron 55.0%
AGGGAAAACGGAGGATGCAG+AGG - tig0020408:114633-114652 Msa1380900:intron 55.0%
!! GCACTTGCTTTGAGGCGCAA+GGG - tig0020408:114985-115004 Msa1380900:intron 55.0%
GCACTCACCTCGGCAGATAA+TGG + tig0020408:115192-115211 None:intergenic 55.0%
ACGGCTTTGCAGCAGCATTC+GGG + tig0020408:115758-115777 None:intergenic 55.0%
GCCCTAAAGCTACGGAGAGA+TGG - tig0020408:115834-115853 Msa1380900:intron 55.0%
GGCCATCTCTCCGTAGCTTT+AGG + tig0020408:115839-115858 None:intergenic 55.0%
GGCAATTGAAGCGCAGTTGG+AGG - tig0020408:115896-115915 Msa1380900:intron 55.0%
TGAAGCGCAGTTGGAGGAGT+TGG - tig0020408:115902-115921 Msa1380900:intron 55.0%
TGCCGATAAGTCAGATGCGG+TGG - tig0020408:115935-115954 Msa1380900:intron 55.0%
GACCCCCACACCTTCTACAG+TGG + tig0020408:112553-112572 None:intergenic 60.0%
! TTGAGTTGCGACAGGGACGC+AGG - tig0020408:112678-112697 Msa1380900:CDS 60.0%
TGAGTTGCGACAGGGACGCA+GGG - tig0020408:112679-112698 Msa1380900:CDS 60.0%
CCACGGTGGCACCAAAAAGC+CGG - tig0020408:114128-114147 Msa1380900:CDS 60.0%
!! GGCACTTGCTTTGAGGCGCA+AGG - tig0020408:114984-115003 Msa1380900:intron 60.0%
AGCCAGGGACGAACTTCGAC+AGG - tig0020408:115626-115645 Msa1380900:intron 60.0%
CGGCTTTGCAGCAGCATTCG+GGG + tig0020408:115757-115776 None:intergenic 60.0%
ACGGAGAGATGGCCGAACAG+AGG - tig0020408:115845-115864 Msa1380900:intron 60.0%
GTTGGAGGAGTTGGCTGCTG+AGG - tig0020408:115911-115930 Msa1380900:intron 60.0%
!! GGCACGTCGAAGAGCATCCA+AGG + tig0020408:116192-116211 None:intergenic 60.0%
!!! CCGGCTTTTTGGTGCCACCG+TGG + tig0020408:114131-114150 None:intergenic 65.0%
GGCCTGTCGAAGTTCGTCCC+TGG + tig0020408:115631-115650 None:intergenic 65.0%
TTGCGACAGGGACGCAGGGC+TGG - tig0020408:112683-112702 Msa1380900:CDS 70.0%
TGCGACAGGGACGCAGGGCT+GGG - tig0020408:112684-112703 Msa1380900:CDS 70.0%
CAGGGACGCAGGGCTGGGAG+AGG - tig0020408:112689-112708 Msa1380900:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0020408 gene 110789 116568 110789 ID=Msa1380900;Name=Msa1380900
tig0020408 mRNA 110789 116568 110789 ID=Msa1380900-mRNA-1;Parent=Msa1380900;Name=Msa1380900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188|1|1|1|1|1|3|312|1229
tig0020408 exon 110789 114513 110789 ID=Msa1380900-mRNA-1:exon:7254;Parent=Msa1380900-mRNA-1
tig0020408 exon 114647 114809 114647 ID=Msa1380900-mRNA-1:exon:7253;Parent=Msa1380900-mRNA-1
tig0020408 exon 116267 116568 116267 ID=Msa1380900-mRNA-1:exon:7252;Parent=Msa1380900-mRNA-1
tig0020408 five_prime_UTR 116381 116568 116381 ID=Msa1380900-mRNA-1:five_prime_utr;Parent=Msa1380900-mRNA-1
tig0020408 CDS 116267 116380 116267 ID=Msa1380900-mRNA-1:cds;Parent=Msa1380900-mRNA-1
tig0020408 CDS 114647 114809 114647 ID=Msa1380900-mRNA-1:cds;Parent=Msa1380900-mRNA-1
tig0020408 CDS 111101 114513 111101 ID=Msa1380900-mRNA-1:cds;Parent=Msa1380900-mRNA-1
tig0020408 three_prime_UTR 110789 111100 110789 ID=Msa1380900-mRNA-1:three_prime_utr;Parent=Msa1380900-mRNA-1
Gene Sequence

>Msa1380900

ATGTTAGCGAAGATCGGGTTGCCACCAAAGCCTTCTTTACGAGGGAATAATTGGGTCGTTGATGCCTCTAATTGCCAGGGTTGTTCCGCTCAATTCACCTTCATCAATCGCAAGCACCACTGTAGAAGGTGTGGGGGTCTATTTTGCGGAAGTTGTACCCAACAAAGAATGGCTTTGCGTGGACAGGGTGATTCGCCTGTACGTATATGTGAACCTTGTAAGAAGCTAGAAGAGGCAGCACGATTTGAGTTGCGACAGGGACGCAGGGCTGGGAGAGGAAGCTTGAAATCAGCACCTAGAGATGAAGATGAAATTCTCAACCAGATTCTTGGTCAAAACGAGGAACTTCTTTTATCAGGAAAGCAATCAACCAGTGACAAAGGTCGTAGTGGCCAGAGATCAGTTAGCGCTGCATCTTCTTCAAGTACTACAGGATTTTCTATTCAGGACGAAGAAGATATACAAAAGATTATATCAACTGAAACAACGAATAGTATGGCTGTTGATGTGGGATCCACCACTCCTGATGAGTTACGTCAGCAAGCTTTAGCGGAAAAAAGTAAGTATAAAATTCTGAAAGGAGACGGGAAATCTGAGGAAGCCTTGAAAGCTTTTAAGAGAGGGAAGGAGCTTGAGAGGCAAGCAGATGCTTTGGAAATTCAGCTAAGGAAAGCGGCTCGGAAAAAGTTGTTGCCTTCTGGAAACATGTCGGATATGCACAACAAAGACATTTCTGTTGAGTCTGGCAGAAAAACAAAGTCACTTCCTCAGACTGGTAAAGATAAGGATGATCTTACTTCAGAACTTCAAGAGCTGGGATGGTCTGATTTGGAACTACACAAAGAAGATAGAAAGTCAGCAAACTTGAGTTTGGAGGGTGAACTCTCCTCCTTGATTGCAGAAACTTTTGCAAAGACAGGTGAAGAAAAGGGCAGCCGGATTGACAAGACTGAGGTTGTTGCTATGAAAAAGAAGGCTCTAACGTTGAAGCGTGAGGGTAAGCTTGCAGAAGCTAAAGAGGAATTGAAAAAAGCAAAAATCCTAGAGAAGCAACTGGAAGAACAGGAACTCCTTGCTGGTGCTGAAGATTCTGATGATGAGCTATCAGCATTAATACGCGGCATGGATGATGATGATAAAGAATTTCCAAATCTGCATGATCATGAGCATGGTTTTGATTTTGATAATCTCTTGGCCATTTCTGATAATCTTGATGGTAATTTAGAAGTGACCGATGAGGATTTGATGGACCCTGAGTTAGCTGGTGCTTTGGAATCACTGGGTTGGACTGAACCTGAAAATACATTTTCCAAATCTCAAACCTTTGACAAAGAAGCGTTGCTAAGTGAAATTCAGTCATTGAAAAGAGAGGCTCTTAATCAAAAGCGAGCAGGTAATACTGAAGAAGCAATGGCGATATTGAAAAAGGCGAAGTTATTAGAAAGTGACTTAAACAACACTGGGTCTGATGACGATAATACTATGTTGCAAAAAGTTACTCCTGTTGGGAAAAGTTTGAGTTCTGAAATTACTGGTAATGATAGAAATAATAATGCCGCTTCCACGGTGGCACCAAAAAGCCGGTTGATGATTCAAAGAGAGCTTTTGAATTCGAAAAAGAAGGTTCTTGCATTGAGAAGGGAAGGGAAAATGGATGAAGCAGAAGAAGAAATGCGGAAGAGTGCAGTTCTTGAGCATCAGCTGATGGAGATGGACAATGCTCCGAGTCAATCATCATCGACGAATACTGGTAATGTCCTGCATGCAGCGAGTAGAAGTCCTCTAGTTGAGGAAGGAAGTGGCGATGATGTAACAGATAAAGATATGTCTGATCCAGCATATCTTTCACTCCTTACGGACTTGGGTTGGAATGATGACAATGATAAACCTTCTAAATCTTCGAACAATCCTTCGAAGACATATGATGATAACTTTGTTCCAGTTGATGATACTTTTCTGAGTAAGCATTCTACAACTATGTTTGTTGAAGCACCAAGAAAAAGTAAAGCAGAAATTCAGAGGGAACTCTTGAGCTTAAAAAGAAAGGCCCTTGCTTTAAGACGGGAAGGGAAAACGGAGGATGCAGAGGAAGTCCTTAAAATGGCCAAAACATTGGAAGCCAAGATAGAAGAGATGGATGCTCTGAAGAATAATGTACAGGTTGAGGCTCTTAAGAAGAAAGAACTCTTCAATTCTCCAGTTGATGTGGCAGTTGATGAAGAAAGGGACATGGTTGTTTCAGAAGAGGATATGCATGACCCAGCATTGAATTCAATGCTTACTAATCTAGGATGGAAGGATGAAGGATTTGAGCCCGTGACCATAAAAGAAGAACCTGTTAAGGAAGCTACTAGTACTGTCACAACTTCAAGGAACAAAGGAGAGATTCAAAGAGAACTCTTAGCGTTGAAAAGGAAGGCACTTGCTTTGAGGCGCAAGGGAGAAATAGAAGAGGCTGAGGAAATTTTAAAAAAGGCCAAGAATCTGGAAGCCCAACTGGAAGATTTTGAGAGCCAAAACAAGGACTTGTTGCTGAATGCATCCAAGGATAAAAAATCTGTTCCGTCTGAATCATCTCACGGAAAAAGTCCTGCAAACTCCCATTTTGCACATGATGAGCATCCATTATCTGCCGAGGTGAGTGCTTCAAGTGAAAATCTCACAAAAAGGATGAAAGTCGAAAATATCATTGCTCATAGCTCCTCAACTGGCCACTCTATGCATATGCCAGATCTACTTACTGGTAATGGCTGTAGCAGTTCTGAAATTTTGTCTCAAAAACAAAAAGAAGAATATAAAGCAGGTTCAGTTAATTCATCTCAAGCGGGTCCTACTATTCCTTTGGACTCCTCAGTGAATCTCAGCCAAGACCAGATATACAAAAACAACATTCAAACCCAAAGAAGAAAAGAAGTGACTGATGTTGATGAAAAGCCAAACACAAACCAGTCAAATGTTGTTCCAGATTATGCTTCTCAGGACGACCTTTCTTTGCGTCAAGAAATTTTGGCTCATAAAAGGAAGGCAGTTGCTTTGAAAAGAGAAGGAAAACTAACAGAAGCCAGGGACGAACTTCGACAGGCCAAGCTGTTAGAGAAGAGGTTGGAGGATGGAAGTATGCAGCCAAACACTGTCTCCACCAGCAATGTTTCCAACACATCAAATGTTGTTCAAAAGAAACAAGATTCCCCGAATGCTGCTGCAAAGCCGTTTACTAGTCGTGACCGTTTCAAGTTGCAACAGGAGTCTCTAGCACACAAACGTCAAGCCCTAAAGCTACGGAGAGATGGCCGAACAGAGGAAGCAGAAGCTGAGTTAGAACGGGCAAAGGCAATTGAAGCGCAGTTGGAGGAGTTGGCTGCTGAGGATGCCGATAAGTCAGATGCGGTGGATGATGTGAGTGTTGAGGATTTTCTTGACCCTCAACTCTTATCTGCTCTGAAAGCTACTGGACTTGCAGATTTAACTGTTGTATCTAATAAAAGCCCAGAAAAACAAGAGACTGTGAAACCCGTTGCCAAAATCGAGAACCCTAACCAAGAGAAAATTCAGCTAGAAGAAAGAATTAAAGAAGAAAAACTGAAGGCGGTTAGTTTGAAACGATCAGGAAAACAAGCTGAAGCCTTGGATGCTCTTCGACGTGCCAAAATGTATGAAAAGAAGCTGAATTCATTGTTAACATCTGGGTGA
Protein sequence

>Msa1380900

MLAKIGLPPKPSLRGNNWVVDASNCQGCSAQFTFINRKHHCRRCGGLFCGSCTQQRMALRGQGDSPVRICEPCKKLEEAARFELRQGRRAGRGSLKSAPRDEDEILNQILGQNEELLLSGKQSTSDKGRSGQRSVSAASSSSTTGFSIQDEEDIQKIISTETTNSMAVDVGSTTPDELRQQALAEKSKYKILKGDGKSEEALKAFKRGKELERQADALEIQLRKAARKKLLPSGNMSDMHNKDISVESGRKTKSLPQTGKDKDDLTSELQELGWSDLELHKEDRKSANLSLEGELSSLIAETFAKTGEEKGSRIDKTEVVAMKKKALTLKREGKLAEAKEELKKAKILEKQLEEQELLAGAEDSDDELSALIRGMDDDDKEFPNLHDHEHGFDFDNLLAISDNLDGNLEVTDEDLMDPELAGALESLGWTEPENTFSKSQTFDKEALLSEIQSLKREALNQKRAGNTEEAMAILKKAKLLESDLNNTGSDDDNTMLQKVTPVGKSLSSEITGNDRNNNAASTVAPKSRLMIQRELLNSKKKVLALRREGKMDEAEEEMRKSAVLEHQLMEMDNAPSQSSSTNTGNVLHAASRSPLVEEGSGDDVTDKDMSDPAYLSLLTDLGWNDDNDKPSKSSNNPSKTYDDNFVPVDDTFLSKHSTTMFVEAPRKSKAEIQRELLSLKRKALALRREGKTEDAEEVLKMAKTLEAKIEEMDALKNNVQVEALKKKELFNSPVDVAVDEERDMVVSEEDMHDPALNSMLTNLGWKDEGFEPVTIKEEPVKEATSTVTTSRNKGEIQRELLALKRKALALRRKGEIEEAEEILKKAKNLEAQLEDFESQNKDLLLNASKDKKSVPSESSHGKSPANSHFAHDEHPLSAEVSASSENLTKRMKVENIIAHSSSTGHSMHMPDLLTGNGCSSSEILSQKQKEEYKAGSVNSSQAGPTIPLDSSVNLSQDQIYKNNIQTQRRKEVTDVDEKPNTNQSNVVPDYASQDDLSLRQEILAHKRKAVALKREGKLTEARDELRQAKLLEKRLEDGSMQPNTVSTSNVSNTSNVVQKKQDSPNAAAKPFTSRDRFKLQQESLAHKRQALKLRRDGRTEEAEAELERAKAIEAQLEELAAEDADKSDAVDDVSVEDFLDPQLLSALKATGLADLTVVSNKSPEKQETVKPVAKIENPNQEKIQLEERIKEEKLKAVSLKRSGKQAEALDALRRAKMYEKKLNSLLTSG*