AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401420 MtrunA17_Chr3g0090131 88.415 492 12 1 1 447 1 492 0.0 879
Msa0401420 MtrunA17_Chr3g0090111 79.268 492 54 3 1 447 1 489 0.0 789
Msa0401420 MtrunA17_Chr4g0043091 48.218 477 188 5 20 438 27 502 3.67e-159 459
Msa0401420 MtrunA17_Chr6g0482131 46.849 476 195 5 21 438 36 511 9.54e-150 436
Msa0401420 MtrunA17_Chr4g0042171 46.138 479 198 5 19 438 22 499 7.53e-149 433
Msa0401420 MtrunA17_Chr6g0482941 47.458 472 189 6 21 437 43 510 1.35e-145 425
Msa0401420 MtrunA17_Chr6g0482951 47.034 472 191 6 21 437 43 510 2.50e-145 424
Msa0401420 MtrunA17_Chr6g0482071 46.008 476 199 5 21 438 37 512 1.97e-144 422
Msa0401420 MtrunA17_Chr2g0329191 45.607 478 201 6 19 438 32 508 6.47e-143 418
Msa0401420 MtrunA17_Chr2g0329201 45.607 478 202 6 19 438 29 506 2.11e-142 417
Msa0401420 MtrunA17_Chr3g0087261 42.739 482 220 4 14 440 30 510 1.46e-140 412
Msa0401420 MtrunA17_Chr4g0033201 44.142 478 209 5 19 438 34 511 2.74e-140 411
Msa0401420 MtrunA17_Chr4g0033271 45.073 477 202 7 21 438 35 510 2.99e-140 411
Msa0401420 MtrunA17_Chr4g0033311 44.025 477 207 6 21 438 39 514 1.26e-139 410
Msa0401420 MtrunA17_Chr4g0033321 45.228 482 205 5 21 444 33 513 5.29e-139 408
Msa0401420 MtrunA17_Chr3g0087271 42.827 474 215 4 22 440 39 511 1.47e-137 404
Msa0401420 MtrunA17_Chr4g0010501 44.211 475 205 7 20 438 23 493 3.25e-137 403
Msa0401420 MtrunA17_Chr4g0033331 43.908 476 209 5 20 437 38 513 3.33e-137 404
Msa0401420 MtrunA17_Chr4g0033401 44.748 476 205 5 20 437 33 508 6.13e-137 403
Msa0401420 MtrunA17_Chr3g0088441 42.678 478 214 6 20 438 37 513 1.46e-135 400
Msa0401420 MtrunA17_Chr4g0033341 43.882 474 210 5 21 438 69 542 2.90e-135 400
Msa0401420 MtrunA17_Chr4g0033261 43.100 471 202 5 18 438 38 492 6.79e-134 394
Msa0401420 MtrunA17_Chr2g0317841 42.916 487 217 5 19 447 30 513 1.02e-132 392
Msa0401420 MtrunA17_Chr4g0033191 42.236 483 221 5 20 444 42 524 2.35e-131 389
Msa0401420 MtrunA17_Chr6g0482081 42.500 480 213 6 20 438 35 512 2.98e-130 386
Msa0401420 MtrunA17_Chr2g0317821 43.532 487 214 6 19 447 30 513 3.25e-130 386
Msa0401420 MtrunA17_Chr4g0033231 42.251 471 206 5 18 438 38 492 2.20e-129 383
Msa0401420 MtrunA17_Chr2g0288021 41.734 496 230 7 7 445 22 515 1.91e-127 379
Msa0401420 MtrunA17_Chr2g0329321 42.259 478 192 7 19 438 36 487 2.39e-127 377
Msa0401420 MtrunA17_Chr4g0006971 41.290 465 225 5 22 439 28 491 9.34e-126 374
Msa0401420 MtrunA17_Chr4g0074551 44.025 477 209 8 19 438 48 523 1.14e-125 376
Msa0401420 MtrunA17_Chr7g0242691 41.075 465 226 6 21 438 31 494 2.63e-123 368
Msa0401420 MtrunA17_Chr4g0074561 42.585 472 210 6 26 437 40 510 1.81e-122 366
Msa0401420 MtrunA17_Chr7g0242681 41.505 465 223 7 21 438 38 500 6.61e-122 365
Msa0401420 MtrunA17_Chr2g0288071 43.644 472 207 5 24 437 70 540 2.40e-121 364
Msa0401420 MtrunA17_Chr1g0195611 40.043 467 230 6 19 438 25 488 7.55e-121 362
Msa0401420 MtrunA17_Chr4g0006111 40.373 483 214 5 18 442 62 528 1.61e-120 361
Msa0401420 MtrunA17_Chr5g0428831 41.075 465 223 8 22 438 28 489 1.32e-119 358
Msa0401420 MtrunA17_Chr5g0430451 42.181 486 188 8 20 438 38 497 2.32e-119 357
Msa0401420 MtrunA17_Chr4g0006131 39.496 476 215 8 20 438 41 500 1.70e-113 343
Msa0401420 MtrunA17_Chr5g0418871 50.000 338 147 5 42 366 4 332 1.32e-110 329
Msa0401420 MtrunA17_Chr1g0195641 47.910 311 148 3 23 322 29 336 5.28e-101 307
Msa0401420 MtrunA17_Chr7g0234091 37.879 462 235 5 22 437 76 531 4.49e-100 309
Msa0401420 MtrunA17_Chr7g0234111 37.446 462 237 6 22 437 76 531 2.06e-99 307
Msa0401420 MtrunA17_Chr7g0234131 36.069 463 243 6 22 437 76 532 6.46e-94 293
Msa0401420 MtrunA17_Chr2g0301231 37.656 401 178 6 94 438 7 391 1.25e-83 262
Msa0401420 MtrunA17_Chr7g0230651 42.701 274 152 2 60 328 11 284 6.73e-79 249
Msa0401420 MtrunA17_Chr3g0087201 42.508 327 131 6 165 437 19 342 4.84e-77 243
Msa0401420 MtrunA17_Chr7g0227561 37.358 265 137 3 23 283 48 287 6.56e-59 195
Msa0401420 MtrunA17_Chr3g0087191 57.718 149 61 2 16 162 17 165 6.70e-56 182
Msa0401420 MtrunA17_Chr7g0236731 41.364 220 124 2 114 328 34 253 1.77e-51 175
Msa0401420 MtrunA17_Chr5g0418861 46.667 90 47 1 349 437 1 90 1.08e-24 97.4
Msa0401420 MtrunA17_Chr4g0068871 26.234 385 224 12 84 440 183 535 4.37e-23 102
Msa0401420 MtrunA17_Chr8g0352881 37.500 88 55 0 235 322 57 144 6.80e-16 75.1
Msa0401420 MtrunA17_Chr8g0352881 58.182 55 23 0 28 82 5 59 1.61e-14 71.2
Msa0401420 MtrunA17_Chr7g0227591 43.103 58 33 0 384 441 12 69 6.12e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401420 AT5G36890.1 63.771 472 124 2 23 447 18 489 0.0 629
Msa0401420 AT5G36890.2 64.043 470 121 3 23 444 18 487 0.0 625
Msa0401420 AT3G18080.1 46.203 474 195 6 21 438 39 508 7.00e-146 426
Msa0401420 AT3G18070.3 44.937 474 193 6 21 438 30 491 6.47e-143 418
Msa0401420 AT3G18070.1 45.148 474 198 6 21 438 30 497 6.33e-142 416
Msa0401420 AT1G26560.1 44.898 490 184 7 20 437 31 506 1.16e-140 412
Msa0401420 AT5G54570.1 44.885 479 203 6 19 437 28 505 1.26e-140 413
Msa0401420 AT2G44480.1 43.958 480 210 8 21 442 35 513 3.10e-138 407
Msa0401420 AT2G44480.3 43.958 480 210 8 21 442 66 544 8.05e-138 407
Msa0401420 AT3G60140.1 42.797 479 214 5 20 438 25 503 2.18e-134 399
Msa0401420 AT2G25630.1 45.652 460 203 7 20 437 29 483 3.11e-134 395
Msa0401420 AT2G44450.1 44.864 477 208 7 20 442 30 505 6.78e-134 395
Msa0401420 AT5G44640.1 44.050 479 204 7 20 439 30 503 1.00e-133 395
Msa0401420 AT5G42260.1 45.629 469 199 8 20 433 30 497 7.35e-132 390
Msa0401420 AT1G02850.2 42.549 463 217 6 22 438 27 486 3.11e-131 388
Msa0401420 AT2G44470.3 42.138 477 216 7 21 437 29 505 9.41e-130 387
Msa0401420 AT5G24550.1 42.797 479 213 8 21 438 32 510 4.19e-127 379
Msa0401420 AT3G60130.1 42.083 480 214 8 18 438 27 501 6.83e-127 377
Msa0401420 AT1G02850.5 40.535 486 217 7 22 438 27 509 4.60e-126 375
Msa0401420 AT1G61820.1 43.305 478 211 9 24 442 33 509 1.45e-124 372
Msa0401420 AT1G02850.4 40.452 487 217 8 22 438 27 510 2.50e-124 371
Msa0401420 AT5G24540.1 44.050 479 207 7 21 438 32 510 5.09e-123 368
Msa0401420 AT4G21760.1 43.612 454 213 5 26 437 59 511 8.18e-123 368
Msa0401420 AT4G21760.2 42.026 464 216 4 26 437 59 521 2.38e-120 362
Msa0401420 AT1G51470.1 40.164 488 236 8 2 437 26 509 2.10e-119 358
Msa0401420 AT1G02850.1 40.389 463 200 7 22 438 27 459 2.22e-119 357
Msa0401420 AT1G47600.2 40.246 487 236 8 2 437 26 508 2.82e-119 358
Msa0401420 AT1G47600.1 40.164 488 236 8 2 437 26 509 3.61e-119 358
Msa0401420 AT1G61810.1 41.822 483 221 8 21 444 33 514 3.69e-119 358
Msa0401420 AT4G27830.1 40.043 467 231 7 18 437 20 484 4.60e-119 357
Msa0401420 AT1G45191.4 38.994 477 239 7 7 438 15 484 2.79e-115 347
Msa0401420 AT5G54570.3 52.366 317 139 3 18 323 27 342 3.56e-115 345
Msa0401420 AT2G32860.2 40.084 479 226 7 20 437 93 571 7.31e-115 350
Msa0401420 AT2G44460.1 41.494 482 220 8 23 444 31 510 1.02e-114 348
Msa0401420 AT1G45191.6 38.477 486 240 8 7 438 15 495 2.38e-114 345
Msa0401420 AT1G45191.2 38.716 483 238 7 7 438 15 490 2.90e-114 345
Msa0401420 AT2G32860.1 40.167 478 226 8 20 437 93 570 3.49e-114 348
Msa0401420 AT3G62750.1 40.220 455 228 6 22 437 24 473 1.69e-113 343
Msa0401420 AT1G45191.1 38.057 494 243 8 7 438 15 507 3.15e-113 343
Msa0401420 AT3G62750.2 40.220 455 228 6 22 437 50 499 3.60e-113 343
Msa0401420 AT1G61810.3 42.544 456 203 7 21 417 33 488 4.17e-113 343
Msa0401420 AT2G44480.2 41.849 411 183 6 88 442 1 411 6.12e-113 338
Msa0401420 AT1G66280.1 40.994 483 221 9 20 441 35 514 1.82e-112 341
Msa0401420 AT1G60090.1 38.351 485 232 7 12 438 15 490 3.22e-112 340
Msa0401420 AT4G22100.1 38.186 474 239 7 23 447 24 492 7.82e-112 339
Msa0401420 AT4G27820.1 39.957 468 228 7 18 437 20 482 3.16e-111 337
Msa0401420 AT3G60120.1 39.184 490 235 8 9 438 4 490 4.74e-111 338
Msa0401420 AT2G44490.1 38.622 479 230 8 23 438 16 493 5.78e-111 338
Msa0401420 AT3G18070.4 49.068 322 152 3 21 333 30 348 9.08e-111 332
Msa0401420 AT5G25980.2 38.193 487 237 8 13 439 42 524 5.89e-110 335
Msa0401420 AT5G54570.2 42.611 406 173 5 91 437 4 408 2.45e-109 330
Msa0401420 AT1G66270.1 40.166 483 225 9 20 441 35 514 2.85e-109 333
Msa0401420 AT1G75940.1 39.796 490 219 10 22 441 38 521 7.57e-109 332
Msa0401420 AT3G62740.1 38.780 459 234 7 22 437 24 478 1.53e-108 330
Msa0401420 AT1G60090.2 38.075 478 236 6 12 438 15 483 5.09e-108 329
Msa0401420 AT1G52400.3 38.589 482 232 8 19 438 37 516 7.56e-107 327
Msa0401420 AT1G52400.1 38.589 482 232 8 19 438 37 516 7.56e-107 327
Msa0401420 AT1G66270.2 39.752 483 225 10 20 441 35 512 7.41e-106 324
Msa0401420 AT2G44470.2 47.975 321 155 3 21 329 29 349 9.87e-106 319
Msa0401420 AT5G26000.1 38.677 499 239 11 2 437 17 511 1.24e-105 324
Msa0401420 AT5G28510.1 38.525 488 234 9 19 441 37 523 4.59e-105 322
Msa0401420 AT2G44470.1 47.975 321 155 3 21 329 29 349 6.48e-105 319
Msa0401420 AT3G60140.2 47.516 322 157 3 20 329 25 346 6.79e-104 317
Msa0401420 AT1G02850.3 42.857 371 172 5 22 355 27 394 5.08e-103 314
Msa0401420 AT3G03640.1 37.630 481 232 10 23 438 36 513 1.13e-102 316
Msa0401420 AT3G60130.3 40.447 403 190 6 82 438 40 438 1.44e-101 310
Msa0401420 AT2G44480.4 48.718 312 146 5 21 320 66 375 5.51e-101 307
Msa0401420 AT3G60130.2 39.372 414 190 6 82 438 40 449 2.11e-99 305
Msa0401420 AT1G45191.5 45.482 332 167 3 7 329 15 341 2.78e-99 303
Msa0401420 AT1G45191.3 45.482 332 167 3 7 329 15 341 2.94e-99 303
Msa0401420 AT1G60270.1 44.172 326 169 3 12 328 15 336 1.26e-95 293
Msa0401420 AT1G61810.4 47.368 323 159 3 21 332 33 355 2.45e-95 293
Msa0401420 AT3G62750.7 46.753 308 158 3 22 328 24 326 2.96e-95 291
Msa0401420 AT3G62750.8 46.753 308 158 3 22 328 24 326 2.96e-95 291
Msa0401420 AT3G62740.2 46.006 313 159 4 22 328 24 332 4.33e-95 293
Msa0401420 AT5G25980.3 43.750 336 172 5 13 335 42 373 9.37e-95 293
Msa0401420 AT5G25980.1 43.750 336 172 5 13 335 42 373 9.37e-95 293
Msa0401420 AT5G24540.2 48.438 320 153 3 21 328 32 351 1.42e-94 293
Msa0401420 AT3G62750.4 39.206 403 202 5 22 386 50 447 3.67e-94 292
Msa0401420 AT3G62750.3 46.753 308 158 3 22 328 50 352 4.70e-94 291
Msa0401420 AT1G61810.5 40.049 412 188 7 91 444 4 414 9.33e-94 289
Msa0401420 AT5G26000.2 44.379 338 170 5 2 324 17 351 1.27e-92 288
Msa0401420 AT4G27830.2 38.287 397 197 6 88 437 1 396 3.97e-92 285
Msa0401420 AT3G21370.1 43.887 319 163 5 19 323 31 347 8.73e-89 280
Msa0401420 AT3G21370.1 48.387 93 44 2 349 440 425 514 1.95e-17 85.1
Msa0401420 AT3G09260.1 43.478 322 169 4 20 329 34 354 2.64e-88 279
Msa0401420 AT3G09260.1 48.718 78 39 1 365 441 437 514 2.18e-14 75.5
Msa0401420 AT1G52400.2 40.209 383 205 8 19 385 37 411 9.59e-87 273
Msa0401420 AT3G62750.6 37.532 389 203 5 88 437 1 388 2.52e-85 267
Msa0401420 AT3G62750.5 37.532 389 203 5 88 437 1 388 2.52e-85 267
Msa0401420 AT4G27820.2 37.940 398 198 6 88 437 1 397 2.92e-84 265
Msa0401420 AT4G27820.3 37.940 398 198 6 88 437 1 397 2.92e-84 265
Msa0401420 AT5G48375.1 36.730 422 219 9 2 402 17 411 1.22e-82 261
Msa0401420 AT3G18070.2 42.857 322 125 4 173 438 102 420 1.54e-81 258
Msa0401420 AT3G18070.2 44.737 76 42 0 21 96 30 105 5.63e-16 80.1
Msa0401420 AT1G61810.2 47.794 272 132 2 21 282 33 304 2.01e-81 254
Msa0401420 AT2G44450.2 38.983 354 165 4 140 442 1 354 1.52e-78 248
Msa0401420 AT1G61820.3 38.108 370 166 6 133 442 4 370 1.74e-78 249
Msa0401420 AT1G51490.1 44.231 312 151 10 29 328 28 328 7.07e-75 240
Msa0401420 AT3G18070.7 41.479 311 123 4 184 438 1 308 1.32e-74 236
Msa0401420 AT2G44460.2 39.617 366 160 7 138 444 1 364 2.21e-70 229
Msa0401420 AT2G44480.5 38.033 305 134 5 193 442 3 307 2.39e-68 220
Msa0401420 AT1G60270.2 44.082 245 127 2 93 328 6 249 2.77e-68 219
Msa0401420 AT3G18070.5 48.235 170 79 1 173 333 102 271 5.21e-50 173
Msa0401420 AT3G18070.5 44.737 76 42 0 21 96 30 105 2.87e-16 80.1
Msa0401420 AT3G18070.6 45.912 159 77 1 184 333 1 159 2.88e-43 152
Msa0401420 AT5G16580.1 33.212 274 140 6 164 394 26 299 1.91e-41 149
Msa0401420 AT3G06510.1 26.247 381 231 13 83 440 159 512 1.53e-23 103
Msa0401420 AT3G06510.2 26.016 246 148 10 83 321 159 377 6.04e-11 65.1

Find 101 sgRNAs with CRISPR-Local

Find 627 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCCTCCTCCGAGAATT+TGG 0.134106 3_2:-27293303 None:intergenic
ATCAATGCTCTTCTTGAAAA+AGG 0.186679 3_2:+27291874 Msa0401420:CDS
GAAGAATTTCTGAGAGAAAA+TGG 0.220328 3_2:+27286777 Msa0401420:CDS
GATACTTGCTTTGCAAGTTT+TGG 0.249512 3_2:+27292411 Msa0401420:CDS
ACCTCGTTGTATAGTGATTT+AGG 0.261744 3_2:-27293358 None:intergenic
TTGAATTCTTTGGACTTCAT+TGG 0.280186 3_2:+27293335 Msa0401420:CDS
TTCTTGCATCCACTATATTA+TGG 0.285971 3_2:+27293236 Msa0401420:CDS
TTCCCTTCCGATTTCGTCTT+CGG 0.287781 3_2:+27286840 Msa0401420:CDS
TCTTCAATCTTATCAGAGTT+TGG 0.311629 3_2:-27292873 None:intergenic
AGTCGCCACCTCTGCTTATC+AGG 0.328778 3_2:+27286863 Msa0401420:CDS
ACCCAAAGTCTTCTGCATAT+TGG 0.333496 3_2:+27295419 Msa0401420:CDS
GGCATATGAAATATAAGATT+TGG 0.334334 3_2:-27295626 None:intergenic
GTGGTAGAGGTCCTAGTATA+TGG 0.341211 3_2:+27290097 Msa0401420:CDS
TGATGATGTGCTGCTAAGTA+TGG 0.341542 3_2:-27292543 None:intergenic
ACCAATATGCAGAAGACTTT+GGG 0.355117 3_2:-27295420 None:intergenic
TCATCTAGCATCTCATTTAG+TGG 0.371886 3_2:-27294492 None:intergenic
TGCTTATTTCTATAGATAGA+AGG 0.374326 3_2:+27290060 Msa0401420:intron
TGATCATTATCATCGTTATA+AGG 0.400828 3_2:+27290260 Msa0401420:CDS
TTATCCTCCTCCGAGAATTT+GGG 0.401648 3_2:-27293302 None:intergenic
ACCCACCAACTGCGGTTTGA+AGG 0.428874 3_2:-27292470 None:intergenic
GGCTGGTTGTAGACTCTGAA+TGG 0.429555 3_2:+27292844 Msa0401420:CDS
GTTTGACCTTGTACTTGCTT+CGG 0.440391 3_2:-27292599 None:intergenic
TATTGATCTTATAGCCAAGT+TGG 0.446830 3_2:+27290666 Msa0401420:CDS
AACCAATATGCAGAAGACTT+TGG 0.453110 3_2:-27295421 None:intergenic
GCACAACAGCTGGACAGAAT+TGG 0.456329 3_2:+27293428 Msa0401420:CDS
GCTAGCAAGGAGGGTGGTAG+AGG 0.457690 3_2:+27290084 Msa0401420:CDS
AGTCGTTCACGCATAACTTC+AGG 0.457789 3_2:-27293266 None:intergenic
ATTGATCTTATAGCCAAGTT+GGG 0.461829 3_2:+27290667 Msa0401420:CDS
CCCCTTCAAACCGCAGTTGG+TGG 0.465082 3_2:+27292468 Msa0401420:CDS
CTTGTCGTAATGACATTCTT+CGG 0.465885 3_2:-27293405 None:intergenic
ATAGACCAATCCGAAGCGTT+TGG 0.469827 3_2:-27295368 None:intergenic
AGCAGCACATCATCAAATCT+TGG 0.471284 3_2:+27292551 Msa0401420:CDS
AGACCGACTTCCCAAATTCT+CGG 0.471407 3_2:+27293292 Msa0401420:CDS
ACTGCATCTTGATGAGTCAA+TGG 0.476677 3_2:+27292014 Msa0401420:CDS
TTTCGCGGTTTCTTAAAGAT+GGG 0.480453 3_2:+27295443 Msa0401420:CDS
TTACGACAAGGCACAACAGC+TGG 0.483666 3_2:+27293418 Msa0401420:CDS
CAAGGTTATACCAAACGCTT+CGG 0.487707 3_2:+27295358 Msa0401420:CDS
GCATAGGCATCCCATATACT+AGG 0.491716 3_2:-27290108 None:intergenic
TTTATGGGTGTAGATGGCTT+AGG 0.494310 3_2:+27291808 Msa0401420:intron
CCCACCAACTGCGGTTTGAA+GGG 0.498031 3_2:-27292469 None:intergenic
ACCAGCCAAGACGAAAATCT+AGG 0.501744 3_2:-27292917 None:intergenic
ATCAAGCAATTGAGCTCAAG+TGG 0.503129 3_2:+27295702 Msa0401420:three_prime_UTR
TAAAGATGGGGCAAACAAGA+AGG 0.505631 3_2:+27295456 Msa0401420:CDS
GGCGACTCCGAAGACGAAAT+CGG 0.508894 3_2:-27286847 None:intergenic
GGAACCAATGTCAATGATGA+AGG 0.509270 3_2:+27291829 Msa0401420:CDS
ATTACTTGACAACTTCGAAT+GGG 0.517605 3_2:+27295333 Msa0401420:CDS
CAATGGTACAAAGTTACAAA+AGG 0.518258 3_2:-27291982 None:intergenic
CTGCATCTTGATGAGTCAAT+GGG 0.519946 3_2:+27292015 Msa0401420:CDS
GGATAGTCTCCATAATATAG+TGG 0.522297 3_2:-27293245 None:intergenic
GAAGTTATGCGTGAACGACT+TGG 0.522922 3_2:+27293269 Msa0401420:CDS
TTATACCAAACGCTTCGGAT+TGG 0.523284 3_2:+27295363 Msa0401420:CDS
GCTGGTTGTAGACTCTGAAT+GGG 0.524122 3_2:+27292845 Msa0401420:CDS
ATAGATAGAAGGTGCTAGCA+AGG 0.527398 3_2:+27290071 Msa0401420:intron
TATTTACCGAAGCAAGTACA+AGG 0.527429 3_2:+27292593 Msa0401420:CDS
CCCTTCAAACCGCAGTTGGT+GGG 0.530206 3_2:+27292469 Msa0401420:CDS
ATACCTTGCATCACTTGTGC+AGG 0.530616 3_2:+27294542 Msa0401420:CDS
GTATTTGGTAAGACACATAA+TGG 0.534050 3_2:-27295510 None:intergenic
CATTACTTGACAACTTCGAA+TGG 0.539797 3_2:+27295332 Msa0401420:CDS
TGGTAGAGGTCCTAGTATAT+GGG 0.543561 3_2:+27290098 Msa0401420:CDS
ATGCTTTGTATAAACTAGAG+TGG 0.546313 3_2:+27295578 Msa0401420:three_prime_UTR
GATGCTGGAGTTAATGCTCC+TGG 0.547337 3_2:+27292495 Msa0401420:CDS
ATAGAAGGTGCTAGCAAGGA+GGG 0.552629 3_2:+27290075 Msa0401420:CDS
AAATAGAAACAGCTTCTGCA+TGG 0.554274 3_2:-27292575 None:intergenic
GCAGTTGGTGGGTATGATGC+TGG 0.554523 3_2:+27292480 Msa0401420:CDS
CTGCGAGTTCGCTATTACAA+GGG 0.562943 3_2:+27294519 Msa0401420:CDS
GACAACTTCGAATGGGCTCA+AGG 0.563677 3_2:+27295340 Msa0401420:CDS
ACTGCGAGTTCGCTATTACA+AGG 0.565427 3_2:+27294518 Msa0401420:CDS
TATGCCTTCATCATTGACAT+TGG 0.565847 3_2:-27291833 None:intergenic
ATCTAGGTGTCTCGCAGCAG+CGG 0.565847 3_2:-27292901 None:intergenic
CCTCCGAGAATTTGGGAAGT+CGG 0.566416 3_2:-27293295 None:intergenic
TTCGCGGTTTCTTAAAGATG+GGG 0.576695 3_2:+27295444 Msa0401420:CDS
GTAAGCGTTGAAACCCAACT+TGG 0.587967 3_2:-27290680 None:intergenic
GATGCCTATGCTTATACTGA+AGG 0.593156 3_2:+27290120 Msa0401420:CDS
GAGCCCCTTCAAACCGCAGT+TGG 0.595137 3_2:+27292465 Msa0401420:CDS
AAAGATGGGGCAAACAAGAA+GGG 0.597402 3_2:+27295457 Msa0401420:CDS
ACTTCCCAAATTCTCGGAGG+AGG 0.598018 3_2:+27293298 Msa0401420:CDS
AATAGAAACAGCTTCTGCAT+GGG 0.599937 3_2:-27292574 None:intergenic
CCACCAACTGCGGTTTGAAG+GGG 0.600742 3_2:-27292468 None:intergenic
AAAATACTCGACAAAAGCAA+TGG 0.611643 3_2:+27290225 Msa0401420:CDS
ACTCCGAAGACGAAATCGGA+AGG 0.616491 3_2:-27286843 None:intergenic
ATTGACTCATCAAGATGCAG+TGG 0.618454 3_2:-27292012 None:intergenic
TGATGTTCCAGGATAAGCAA+GGG 0.620122 3_2:+27292811 Msa0401420:intron
AGGGATGGAGCTGATGTGAG+AGG 0.625962 3_2:+27295295 Msa0401420:intron
CATACCTTCAGTATAAGCAT+AGG 0.630354 3_2:-27290124 None:intergenic
TTGATGTTCCAGGATAAGCA+AGG 0.633558 3_2:+27292810 Msa0401420:intron
ATGTGAGAGGACACTTTGCA+TGG 0.634153 3_2:+27295308 Msa0401420:CDS
TTGATGAGTCAATGGGAGGA+TGG 0.652779 3_2:+27292022 Msa0401420:CDS
TAGCCTGCACAAGTGATGCA+AGG 0.652910 3_2:-27294545 None:intergenic
CGAAGAATGTCATTACGACA+AGG 0.654678 3_2:+27293406 Msa0401420:CDS
GATAGAAGGTGCTAGCAAGG+AGG 0.656517 3_2:+27290074 Msa0401420:intron
AGGAACCTGATAAGCAGAGG+TGG 0.662364 3_2:-27286868 None:intergenic
CTCCGAAGACGAAATCGGAA+GGG 0.663255 3_2:-27286842 None:intergenic
CAAAGGAACCTGATAAGCAG+AGG 0.665944 3_2:-27286871 None:intergenic
GATGTTCCAGGATAAGCAAG+GGG 0.676059 3_2:+27292812 Msa0401420:intron
GAAGGTGCTAGCAAGGAGGG+TGG 0.683982 3_2:+27290078 Msa0401420:CDS
AGCATCATACCCACCAACTG+CGG 0.685967 3_2:-27292478 None:intergenic
CATCTTGATGAGTCAATGGG+AGG 0.710481 3_2:+27292018 Msa0401420:CDS
GATGCAGTGGAAGATCCCAA+TGG 0.714924 3_2:-27291999 None:intergenic
CCGACTTCCCAAATTCTCGG+AGG 0.756560 3_2:+27293295 Msa0401420:CDS
ATGTTCCAGGATAAGCAAGG+GGG 0.760256 3_2:+27292813 Msa0401420:intron
GCCTAAATCACTATACAACG+AGG 0.773876 3_2:+27293357 Msa0401420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAAAATTTTTTTTGG+GGG - chr3_2:27288291-27288310 None:intergenic 10.0%
!!! AATTTTAAATAAAGATTCTA+TGG + chr3_2:27288299-27288318 Msa0401420:intron 10.0%
!!! AAATTTTAAAGTAAAAGAAA+AGG + chr3_2:27291012-27291031 Msa0401420:intron 10.0%
!! TAACAAATTAAATATATACT+TGG - chr3_2:27292252-27292271 None:intergenic 10.0%
!!! GTATATATTTAATTTGTTAT+TGG + chr3_2:27292253-27292272 Msa0401420:intron 10.0%
!! ATATTTATCAAAAAATTTAG+AGG - chr3_2:27292285-27292304 None:intergenic 10.0%
!! AAGAGAATAAAAAAAAATTA+AGG + chr3_2:27295121-27295140 Msa0401420:intron 10.0%
!! AGAGAATAAAAAAAAATTAA+GGG + chr3_2:27295122-27295141 Msa0401420:intron 10.0%
!!! TATTTAAAATTTTTTTTGGG+GGG - chr3_2:27288290-27288309 None:intergenic 15.0%
!!! AATATAAATATGATTTGGTT+TGG + chr3_2:27289188-27289207 Msa0401420:intron 15.0%
!!! ATATAAATATGATTTGGTTT+GGG + chr3_2:27289189-27289208 Msa0401420:intron 15.0%
!! AAATACATATCTTCTTTATA+TGG + chr3_2:27290762-27290781 Msa0401420:intron 15.0%
!!! CGAAAAAATGTTATATTTTA+TGG - chr3_2:27291043-27291062 None:intergenic 15.0%
!! TATGTAAAACCTAAAAATAA+TGG - chr3_2:27291686-27291705 None:intergenic 15.0%
!!! TATTATATTGCAATGTTTTA+TGG + chr3_2:27291792-27291811 Msa0401420:intron 15.0%
!!! ATTATATTGCAATGTTTTAT+GGG + chr3_2:27291793-27291812 Msa0401420:intron 15.0%
!! TAGAAGAGATAAAAATATTA+AGG - chr3_2:27291924-27291943 None:intergenic 15.0%
!! TATAAAACAAATGTATGTAT+AGG - chr3_2:27292947-27292966 None:intergenic 15.0%
!!! AAAATTTCTTTTGAATTCTT+TGG + chr3_2:27293325-27293344 Msa0401420:CDS 15.0%
!! TATATTAATAAACGATAGAA+GGG - chr3_2:27294073-27294092 None:intergenic 15.0%
!! TAATATAAAAACGAAGTATA+TGG + chr3_2:27294895-27294914 Msa0401420:intron 15.0%
!!! TATAAAAAATGGAGTTTTAA+AGG - chr3_2:27295650-27295669 None:intergenic 15.0%
!! TTGAGTTATCTGAAAATAAA+GGG - chr3_2:27287891-27287910 None:intergenic 20.0%
!!! TTTGAGTTATCTGAAAATAA+AGG - chr3_2:27287892-27287911 None:intergenic 20.0%
!!! TATTTTCAGATAACTCAAAA+AGG + chr3_2:27287893-27287912 Msa0401420:intron 20.0%
!!! CTTATTTTTGGTTAGATAAT+TGG - chr3_2:27287954-27287973 None:intergenic 20.0%
!! AAAAGCAAATTTATTTCGTT+TGG - chr3_2:27288414-27288433 None:intergenic 20.0%
!!! GTTTTAATAATGTTCAAAAG+CGG + chr3_2:27288450-27288469 Msa0401420:intron 20.0%
!! TTTCCATAAAAGTTTGATTA+CGG - chr3_2:27288604-27288623 None:intergenic 20.0%
!! ATTTCTATAGTATAGATGTT+GGG - chr3_2:27288813-27288832 None:intergenic 20.0%
!! CATTTCATTAATAGAATATG+TGG - chr3_2:27289071-27289090 None:intergenic 20.0%
!!! TATTTTGATCTTGAAATTGA+AGG + chr3_2:27289629-27289648 Msa0401420:intron 20.0%
!!! CATTTTATGTAAACTTTTTG+TGG + chr3_2:27289769-27289788 Msa0401420:intron 20.0%
!!! ATTAATGTTTACGAAAGTAT+AGG - chr3_2:27289927-27289946 None:intergenic 20.0%
!! GTTTCAGAGAAAAATTAAAT+CGG - chr3_2:27290030-27290049 None:intergenic 20.0%
!! AATTTGCATACACAATATTT+AGG - chr3_2:27290306-27290325 None:intergenic 20.0%
!!! TTTTTACTTTACCATCTTAT+CGG - chr3_2:27290974-27290993 None:intergenic 20.0%
!!! TAATTAATTTGGTAAAGGTT+TGG - chr3_2:27291487-27291506 None:intergenic 20.0%
!!! TAAGTAGTGGATAATTAATT+TGG - chr3_2:27291498-27291517 None:intergenic 20.0%
!!! ACCTAAAAATAATGGTTTTA+GGG - chr3_2:27291678-27291697 None:intergenic 20.0%
!!! AACCTAAAAATAATGGTTTT+AGG - chr3_2:27291679-27291698 None:intergenic 20.0%
!! CTTACATTAATATGTAGATT+TGG + chr3_2:27291726-27291745 Msa0401420:intron 20.0%
!! TGGGAAATGATTAATATATA+TGG - chr3_2:27291951-27291970 None:intergenic 20.0%
!! GTTGAATAAAAATATCATGT+AGG + chr3_2:27292044-27292063 Msa0401420:intron 20.0%
!! GTTGAATAAAAAAATCATGT+AGG + chr3_2:27292177-27292196 Msa0401420:intron 20.0%
!! TATCAAAAAATTTAGAGGTA+AGG - chr3_2:27292280-27292299 None:intergenic 20.0%
!! ATAAATGTAATCTAACAAGT+AGG - chr3_2:27292637-27292656 None:intergenic 20.0%
!! ATATTAATAAACGATAGAAG+GGG - chr3_2:27294072-27294091 None:intergenic 20.0%
!! GTATATTAATAAACGATAGA+AGG - chr3_2:27294074-27294093 None:intergenic 20.0%
!!! ATAAACAGATTTTATATGAC+TGG + chr3_2:27294384-27294403 Msa0401420:intron 20.0%
!! CGATAATTTGAAAAATAAAC+TGG - chr3_2:27294622-27294641 None:intergenic 20.0%
!!! TTCAATGTTTTTAAGCAAAT+AGG - chr3_2:27295022-27295041 None:intergenic 20.0%
!! CAAATGATTTACAAAACTTT+AGG - chr3_2:27295268-27295287 None:intergenic 20.0%
!!! CATTATTTTCTTGTAGTATT+TGG - chr3_2:27295528-27295547 None:intergenic 20.0%
!!! CAAATAATGACATAAGTTTT+TGG - chr3_2:27295557-27295576 None:intergenic 20.0%
!! CAAAAACTTATGTCATTATT+TGG + chr3_2:27295555-27295574 Msa0401420:three_prime_UTR 20.0%
!! GCTAAGACAAATATAAAAAA+TGG - chr3_2:27295661-27295680 None:intergenic 20.0%
!!! CATTTGTCTTTTTGATGATT+TGG + chr3_2:27286908-27286927 Msa0401420:intron 25.0%
!! GATTTTTAATCACAAAACCA+AGG - chr3_2:27287251-27287270 None:intergenic 25.0%
! TGAGTTATCTGAAAATAAAG+GGG - chr3_2:27287890-27287909 None:intergenic 25.0%
!!! TTTTGGTTAGATAATTGGTT+GGG - chr3_2:27287949-27287968 None:intergenic 25.0%
!!! TTTTTGGTTAGATAATTGGT+TGG - chr3_2:27287950-27287969 None:intergenic 25.0%
!!! TTACTTTCTTTCCTTTTTCA+AGG - chr3_2:27288346-27288365 None:intergenic 25.0%
! AAAAAGGAAAGAAAGTAAAC+CGG + chr3_2:27288348-27288367 Msa0401420:intron 25.0%
! TTCCATAAAAGTTTGATTAC+GGG - chr3_2:27288603-27288622 None:intergenic 25.0%
! CATTTCTATAGTATAGATGT+TGG - chr3_2:27288814-27288833 None:intergenic 25.0%
! TCATTAATAGAATATGTGGT+GGG - chr3_2:27289067-27289086 None:intergenic 25.0%
! TTCATTAATAGAATATGTGG+TGG - chr3_2:27289068-27289087 None:intergenic 25.0%
! GCATCAAATTTAATCTCTAT+TGG - chr3_2:27289258-27289277 None:intergenic 25.0%
! TTAAATGAAAATGAGAGGTT+CGG - chr3_2:27289305-27289324 None:intergenic 25.0%
! TTTGGTTAAATGAAAATGAG+AGG - chr3_2:27289310-27289329 None:intergenic 25.0%
! GAATATAGGAATATCTCAAT+TGG - chr3_2:27289433-27289452 None:intergenic 25.0%
!!! AAATTTCAAGCTTGCTATTT+TGG - chr3_2:27289547-27289566 None:intergenic 25.0%
!!! TTTTGTTATAGTTGTTGTTG+TGG + chr3_2:27289731-27289750 Msa0401420:intron 25.0%
! TGAGCAATAGTTAAAAACAT+AGG - chr3_2:27289972-27289991 None:intergenic 25.0%
!!! TGCTTATTTCTATAGATAGA+AGG + chr3_2:27290060-27290079 Msa0401420:intron 25.0%
!!! TTACTATTTGTGTGTTGTTT+TGG + chr3_2:27290197-27290216 Msa0401420:intron 25.0%
! TGATCATTATCATCGTTATA+AGG + chr3_2:27290260-27290279 Msa0401420:CDS 25.0%
! TTCAAAAATCTTTCTTCACT+TGG - chr3_2:27290400-27290419 None:intergenic 25.0%
! TTTCTAATCCAAAATCAATC+TGG - chr3_2:27290441-27290460 None:intergenic 25.0%
!! CTTACAGATTTTCAATTTCT+TGG + chr3_2:27290698-27290717 Msa0401420:CDS 25.0%
! ATCACTAATAAAACATACCA+GGG - chr3_2:27290735-27290754 None:intergenic 25.0%
!! TATTGAACATGTATTGATGA+CGG - chr3_2:27290853-27290872 None:intergenic 25.0%
!! TAGTTAATATTTGCCTCTTT+TGG + chr3_2:27290871-27290890 Msa0401420:intron 25.0%
! TGTTTACAACAGTTGATTAA+AGG + chr3_2:27290906-27290925 Msa0401420:intron 25.0%
! GATGGTAAAGTAAAAAAGAT+AGG + chr3_2:27290978-27290997 Msa0401420:intron 25.0%
! TAAAGTAAAAAAGATAGGAG+AGG + chr3_2:27290983-27291002 Msa0401420:intron 25.0%
!!! AGTGCAATTTTTTTATACAG+TGG + chr3_2:27291084-27291103 Msa0401420:intron 25.0%
!!! GTGCAATTTTTTTATACAGT+GGG + chr3_2:27291085-27291104 Msa0401420:intron 25.0%
!!! TGCAATTTTTTTATACAGTG+GGG + chr3_2:27291086-27291105 Msa0401420:intron 25.0%
! TAGCAAAATAAAAATGAAGC+AGG + chr3_2:27291156-27291175 Msa0401420:intron 25.0%
! AGCAAAATAAAAATGAAGCA+GGG + chr3_2:27291157-27291176 Msa0401420:intron 25.0%
!! ATTAGTCAACAACTTGTTTA+AGG - chr3_2:27291292-27291311 None:intergenic 25.0%
!! AACAAGTTGTTGACTAATAT+AGG + chr3_2:27291294-27291313 Msa0401420:intron 25.0%
!! GTGGATAATTAATTTGGTAA+AGG - chr3_2:27291492-27291511 None:intergenic 25.0%
!!! TCCCTAAAACCATTATTTTT+AGG + chr3_2:27291674-27291693 Msa0401420:intron 25.0%
! TAAAAATATTAAGGCAAAGC+AGG - chr3_2:27291915-27291934 None:intergenic 25.0%
! ATATATTAATCATTTCCCAC+AGG + chr3_2:27291952-27291971 Msa0401420:intron 25.0%
!! TTTTGTAACTTTGTACCATT+GGG + chr3_2:27291984-27292003 Msa0401420:CDS 25.0%
! AAGTATTAAAGGTTATGATG+TGG + chr3_2:27292155-27292174 Msa0401420:intron 25.0%
! TGCATTCAGTAATAGAATAT+TGG - chr3_2:27292345-27292364 None:intergenic 25.0%
! TGAAAATATATTCTTCGAGT+AGG - chr3_2:27292692-27292711 None:intergenic 25.0%
!! ATATTTTCAATCATCCTACA+TGG + chr3_2:27292703-27292722 Msa0401420:intron 25.0%
! TATATCAAGTGGAAAATCTA+TGG - chr3_2:27292991-27293010 None:intergenic 25.0%
! ATTAAACTCAAAACAGCAAA+AGG + chr3_2:27293109-27293128 Msa0401420:intron 25.0%
! GATAGAATATATTCTTAACC+AGG + chr3_2:27293213-27293232 Msa0401420:intron 25.0%
! AGAATATAAACTTGCATCTT+TGG - chr3_2:27293637-27293656 None:intergenic 25.0%
! ATATTCTATGTGCATATAAC+AGG + chr3_2:27293650-27293669 Msa0401420:intron 25.0%
!!! TCCACTTTTAGAAAACAAAT+AGG + chr3_2:27293797-27293816 Msa0401420:intron 25.0%
!!! CCACTTTTAGAAAACAAATA+GGG + chr3_2:27293798-27293817 Msa0401420:intron 25.0%
! CAATGAGAACAAAACATAAA+AGG - chr3_2:27293930-27293949 None:intergenic 25.0%
!!! CTTTTATGTTTTGTTCTCAT+TGG + chr3_2:27293928-27293947 Msa0401420:intron 25.0%
!!! TTTTGGCTTAACATAAATAC+TGG - chr3_2:27293956-27293975 None:intergenic 25.0%
!! AGGAAAAAAGTGATACATTT+TGG - chr3_2:27293973-27293992 None:intergenic 25.0%
!! GTAAGAAAAGTGATACATTT+TGG - chr3_2:27294042-27294061 None:intergenic 25.0%
! CAATACATAACAGGATAAAT+TGG - chr3_2:27294098-27294117 None:intergenic 25.0%
! AGTTAGAAACAATACATAAC+AGG - chr3_2:27294107-27294126 None:intergenic 25.0%
! TCGTGAACTATAAAAAAGAA+CGG + chr3_2:27294181-27294200 Msa0401420:intron 25.0%
!! AGAACCATTTTATAAAGTTC+TGG - chr3_2:27294411-27294430 None:intergenic 25.0%
! AAATGGTTCTCGTATTTATA+AGG + chr3_2:27294421-27294440 Msa0401420:intron 25.0%
! TATGAATAGAGAGAATTGAA+TGG + chr3_2:27294647-27294666 Msa0401420:intron 25.0%
!! AAACATTGAAAGTTTAGAAC+AGG + chr3_2:27295032-27295051 Msa0401420:intron 25.0%
!! AACATTGAAAGTTTAGAACA+GGG + chr3_2:27295033-27295052 Msa0401420:intron 25.0%
!! AAGGCTTTTATGATTTTCAA+TGG - chr3_2:27295078-27295097 None:intergenic 25.0%
! AAATCATGTATAGATCAGAA+AGG - chr3_2:27295097-27295116 None:intergenic 25.0%
! GTCTATGTAGATTACAAAAA+TGG + chr3_2:27295385-27295404 Msa0401420:CDS 25.0%
! GGCATATGAAATATAAGATT+TGG - chr3_2:27295629-27295648 None:intergenic 25.0%
! GAAGAATTTCTGAGAGAAAA+TGG + chr3_2:27286777-27286796 Msa0401420:CDS 30.0%
!!! GAAAATGGTTTTGAGAAAGA+AGG + chr3_2:27286792-27286811 Msa0401420:CDS 30.0%
ATGTGATAGTTTAAGCACAA+AGG - chr3_2:27286891-27286910 None:intergenic 30.0%
!! CATTCGTTGTGTTTTTACAT+TGG - chr3_2:27287081-27287100 None:intergenic 30.0%
! TCAAGTTAACGTCTTTTCTA+TGG - chr3_2:27287204-27287223 None:intergenic 30.0%
TTTGGAAGGAAAGAAATAAC+AGG - chr3_2:27287273-27287292 None:intergenic 30.0%
!! ACTCTTTTCTTCAGGTTATT+TGG - chr3_2:27287315-27287334 None:intergenic 30.0%
TTAGTCGTTACTCTGTTAAA+GGG - chr3_2:27287693-27287712 None:intergenic 30.0%
ATTAGTCGTTACTCTGTTAA+AGG - chr3_2:27287694-27287713 None:intergenic 30.0%
TTAACAGAGTAACGACTAAT+AGG + chr3_2:27287694-27287713 Msa0401420:intron 30.0%
TAACAGAGTAACGACTAATA+GGG + chr3_2:27287695-27287714 Msa0401420:intron 30.0%
TTTCAGATAACTCAAAAAGG+CGG + chr3_2:27287896-27287915 Msa0401420:intron 30.0%
TTTGGTTAGATAATTGGTTG+GGG - chr3_2:27287948-27287967 None:intergenic 30.0%
AGTTTAATGTCGCTCTTATA+GGG - chr3_2:27288175-27288194 None:intergenic 30.0%
TCAAGAAAATTTCATGGGTA+GGG - chr3_2:27288256-27288275 None:intergenic 30.0%
GGATGTCAAGAAAATTTCAT+GGG - chr3_2:27288261-27288280 None:intergenic 30.0%
AGGATGTCAAGAAAATTTCA+TGG - chr3_2:27288262-27288281 None:intergenic 30.0%
!!! TTAAAATTTTTTTTGGGGGG+TGG - chr3_2:27288287-27288306 None:intergenic 30.0%
TATGGAAGAAATTATACCTG+TGG + chr3_2:27288317-27288336 Msa0401420:intron 30.0%
ATGGAAGAAATTATACCTGT+GGG + chr3_2:27288318-27288337 Msa0401420:intron 30.0%
AGCAAATTTATTTCGTTTGG+TGG - chr3_2:27288411-27288430 None:intergenic 30.0%
TTAAAACTAGATTGTCGAAC+TGG - chr3_2:27288437-27288456 None:intergenic 30.0%
! AGCTTTGATATTGAATTGTC+GGG - chr3_2:27288547-27288566 None:intergenic 30.0%
! CAGCTTTGATATTGAATTGT+CGG - chr3_2:27288548-27288567 None:intergenic 30.0%
! TTCAGATTCTTTGTTGTATG+AGG - chr3_2:27288571-27288590 None:intergenic 30.0%
GTGAGATAGAATAGAAGTAA+AGG + chr3_2:27288656-27288675 Msa0401420:intron 30.0%
TTTGAACTAAACAATGCAAG+CGG - chr3_2:27288956-27288975 None:intergenic 30.0%
TTCAAAGCTTACAAACTCTA+AGG + chr3_2:27288970-27288989 Msa0401420:intron 30.0%
!!! GAGAATGAGAAGGTTTTTTT+TGG - chr3_2:27289328-27289347 None:intergenic 30.0%
TGCACTAAATGCATGAATAT+AGG - chr3_2:27289447-27289466 None:intergenic 30.0%
TATTCATGCATTTAGTGCAT+CGG + chr3_2:27289448-27289467 Msa0401420:intron 30.0%
AAGCTTGAAATTTGAACTGT+CGG + chr3_2:27289554-27289573 Msa0401420:intron 30.0%
ATAAATAATCTCTACGTTCG+TGG - chr3_2:27289612-27289631 None:intergenic 30.0%
! CTTTTTGTGGTATTTTGTTC+TGG + chr3_2:27289782-27289801 Msa0401420:intron 30.0%
GTGTAATTCTAACTTATCCA+CGG + chr3_2:27289858-27289877 Msa0401420:intron 30.0%
ACTATTGCTCAAATGAGTAA+TGG + chr3_2:27289981-27290000 Msa0401420:intron 30.0%
!! AAATGAGTAATGGTATTGGT+AGG + chr3_2:27289991-27290010 Msa0401420:intron 30.0%
! TAGTAAGTAATGAAGCATCA+AGG - chr3_2:27290183-27290202 None:intergenic 30.0%
!!! TATTTGTGTGTTGTTTTGGT+AGG + chr3_2:27290201-27290220 Msa0401420:intron 30.0%
AAAATACTCGACAAAAGCAA+TGG + chr3_2:27290225-27290244 Msa0401420:CDS 30.0%
!! TTGTCTTTCCAGATTGATTT+TGG + chr3_2:27290430-27290449 Msa0401420:intron 30.0%
!! GCATTTAAATGTTGCTTTAC+AGG + chr3_2:27290471-27290490 Msa0401420:intron 30.0%
TGCTCAAAAATAGACTCTAT+GGG - chr3_2:27290513-27290532 None:intergenic 30.0%
CTTAATGTAACTATGTGAAC+AGG + chr3_2:27290639-27290658 Msa0401420:intron 30.0%
TATTGATCTTATAGCCAAGT+TGG + chr3_2:27290666-27290685 Msa0401420:CDS 30.0%
ATTGATCTTATAGCCAAGTT+GGG + chr3_2:27290667-27290686 Msa0401420:CDS 30.0%
CATCACTAATAAAACATACC+AGG - chr3_2:27290736-27290755 None:intergenic 30.0%
TTGATAAACTTCTAGGCTTA+AGG - chr3_2:27290825-27290844 None:intergenic 30.0%
!! GCGTAAATTAAGTTGTTTCT+GGG + chr3_2:27290928-27290947 Msa0401420:intron 30.0%
!! TAAATTAAGTTGTTTCTGGG+AGG + chr3_2:27290931-27290950 Msa0401420:intron 30.0%
!! AAATTAAGTTGTTTCTGGGA+GGG + chr3_2:27290932-27290951 Msa0401420:intron 30.0%
!!! AATTTTTTTATACAGTGGGG+AGG + chr3_2:27291089-27291108 Msa0401420:intron 30.0%
ACATTACATATCCTTTCCTA+TGG - chr3_2:27291198-27291217 None:intergenic 30.0%
! TTGTTGACTAATATAGGAGA+TGG + chr3_2:27291300-27291319 Msa0401420:intron 30.0%
TATTTCTTGTGCAGAGTTTA+CGG - chr3_2:27291357-27291376 None:intergenic 30.0%
TAAACTCTGCACAAGAAATA+TGG + chr3_2:27291357-27291376 Msa0401420:intron 30.0%
! CAAGATTGCTAAATGTTTTG+AGG + chr3_2:27291630-27291649 Msa0401420:intron 30.0%
!!! AAATAATGGTTTTAGGGACA+AGG - chr3_2:27291672-27291691 None:intergenic 30.0%
ATCAATGCTCTTCTTGAAAA+AGG + chr3_2:27291874-27291893 Msa0401420:CDS 30.0%
CAATGGTACAAAGTTACAAA+AGG - chr3_2:27291985-27292004 None:intergenic 30.0%
! CTTTTGTAACTTTGTACCAT+TGG + chr3_2:27291983-27292002 Msa0401420:CDS 30.0%
!! GATGTGCTTGAAAGTATTAA+AGG + chr3_2:27292144-27292163 Msa0401420:intron 30.0%
TCTTCAATCTTATCAGAGTT+TGG - chr3_2:27292876-27292895 None:intergenic 30.0%
CTTCATGCATTTATATCAAG+TGG - chr3_2:27293002-27293021 None:intergenic 30.0%
TATAAATGCATGAAGATGTG+TGG + chr3_2:27293007-27293026 Msa0401420:intron 30.0%
! TACATTTTTGCGTTTAACGT+TGG + chr3_2:27293053-27293072 Msa0401420:intron 30.0%
TTCTTGCATCCACTATATTA+TGG + chr3_2:27293236-27293255 Msa0401420:CDS 30.0%
TTGAATTCTTTGGACTTCAT+TGG + chr3_2:27293335-27293354 Msa0401420:CDS 30.0%
! TCATCAAGGAAGATTCATTT+TGG - chr3_2:27293494-27293513 None:intergenic 30.0%
!! TTTTCTAAAAGTGGACAAGA+AGG - chr3_2:27293792-27293811 None:intergenic 30.0%
!! CCCTATTTGTTTTCTAAAAG+TGG - chr3_2:27293801-27293820 None:intergenic 30.0%
TTTGAATCTTCTGTAGTGTT+TGG + chr3_2:27293878-27293897 Msa0401420:intron 30.0%
TGAGAACAAAACATAAAAGG+CGG - chr3_2:27293927-27293946 None:intergenic 30.0%
GAAAATAGAACAGAACATGT+AGG - chr3_2:27293993-27294012 None:intergenic 30.0%
!!! CATTTTGGTTCTACACAAAT+GGG - chr3_2:27294027-27294046 None:intergenic 30.0%
!!! ACATTTTGGTTCTACACAAA+TGG - chr3_2:27294028-27294047 None:intergenic 30.0%
! TAACTTGTCTCTCAAATGAA+TGG + chr3_2:27294122-27294141 Msa0401420:intron 30.0%
AGAACGGAAATATGTGTAAA+TGG + chr3_2:27294197-27294216 Msa0401420:intron 30.0%
TTATGTTATATGGCTCAACA+AGG + chr3_2:27294231-27294250 Msa0401420:intron 30.0%
AATCCTGATTAGATAGCATA+AGG + chr3_2:27294314-27294333 Msa0401420:intron 30.0%
GTTGAAGATATGTCAACAAT+AGG + chr3_2:27294336-27294355 Msa0401420:intron 30.0%
TGGACCAGAACTTTATAAAA+TGG + chr3_2:27294404-27294423 Msa0401420:intron 30.0%
TAATCTTTGCTTAGCTGATA+TGG + chr3_2:27294860-27294879 Msa0401420:intron 30.0%
TGACAGACATATGCATAATA+AGG - chr3_2:27294939-27294958 None:intergenic 30.0%
! GAAGTTCAAACGATTTTACT+CGG - chr3_2:27295215-27295234 None:intergenic 30.0%
TGTAAATCATTTGAATGCAC+AGG + chr3_2:27295275-27295294 Msa0401420:intron 30.0%
GTAAATCATTTGAATGCACA+GGG + chr3_2:27295276-27295295 Msa0401420:intron 30.0%
ATTACTTGACAACTTCGAAT+GGG + chr3_2:27295333-27295352 Msa0401420:CDS 30.0%
! ATTACAAAAATGGACTCACT+AGG + chr3_2:27295395-27295414 Msa0401420:CDS 30.0%
GTATTTGGTAAGACACATAA+TGG - chr3_2:27295513-27295532 None:intergenic 30.0%
ATGCTTTGTATAAACTAGAG+TGG + chr3_2:27295578-27295597 Msa0401420:three_prime_UTR 30.0%
AATCACAAAACCAAGGAAGT+CGG - chr3_2:27287244-27287263 None:intergenic 35.0%
TTATTTGGCATGCTTGTGTT+TGG - chr3_2:27287300-27287319 None:intergenic 35.0%
! TTCTACTCACTCTTTTCTTC+AGG - chr3_2:27287323-27287342 None:intergenic 35.0%
! CATCAGTTTGGTAATTTAGC+GGG - chr3_2:27287355-27287374 None:intergenic 35.0%
! CCATCAGTTTGGTAATTTAG+CGG - chr3_2:27287356-27287375 None:intergenic 35.0%
CATGATGACATTACTTGTGT+GGG - chr3_2:27287508-27287527 None:intergenic 35.0%
TAAAGGTTTCTGTGTTCGTT+TGG - chr3_2:27287591-27287610 None:intergenic 35.0%
ACGAACACAGAAACCTTTAA+CGG + chr3_2:27287592-27287611 Msa0401420:intron 35.0%
GCTAAAACAAGTTCCGTTAA+AGG - chr3_2:27287608-27287627 None:intergenic 35.0%
AGATATCTACTCTTGACAAG+TGG - chr3_2:27287735-27287754 None:intergenic 35.0%
ACTTGTCAAGAGTAGATATC+TGG + chr3_2:27287734-27287753 Msa0401420:intron 35.0%
GAAAACAATATCACACAGCA+AGG + chr3_2:27287756-27287775 Msa0401420:intron 35.0%
TTCAGATAACTCAAAAAGGC+GGG + chr3_2:27287897-27287916 Msa0401420:intron 35.0%
TTGGTTAGATAATTGGTTGG+GGG - chr3_2:27287947-27287966 None:intergenic 35.0%
GTTTGAGGATAATTTCCGTA+GGG - chr3_2:27287998-27288017 None:intergenic 35.0%
ATATTGTGTGGTATTCGTAG+AGG - chr3_2:27288045-27288064 None:intergenic 35.0%
ACTTTGGTATAGAGTCCTAA+AGG - chr3_2:27288117-27288136 None:intergenic 35.0%
GAGTTTAATGTCGCTCTTAT+AGG - chr3_2:27288176-27288195 None:intergenic 35.0%
TACTCTATGTTTATCGAAGG+AGG - chr3_2:27288228-27288247 None:intergenic 35.0%
GGATACTCTATGTTTATCGA+AGG - chr3_2:27288231-27288250 None:intergenic 35.0%
GTCAAGAAAATTTCATGGGT+AGG - chr3_2:27288257-27288276 None:intergenic 35.0%
TGGAAGAAATTATACCTGTG+GGG + chr3_2:27288319-27288338 Msa0401420:intron 35.0%
! ACCTTACCTTTTGTGTTCTT+GGG - chr3_2:27288519-27288538 None:intergenic 35.0%
! AACCTTACCTTTTGTGTTCT+TGG - chr3_2:27288520-27288539 None:intergenic 35.0%
TTGATATTGAATTGTCGGGT+TGG - chr3_2:27288543-27288562 None:intergenic 35.0%
! CTCCCGTAATCAAACTTTTA+TGG + chr3_2:27288598-27288617 Msa0401420:intron 35.0%
TTGAACACCTTGTAAGTAAG+AGG + chr3_2:27288679-27288698 Msa0401420:intron 35.0%
TATGAGTCCTCTTACTTACA+AGG - chr3_2:27288689-27288708 None:intergenic 35.0%
CTCATAAACCTATTGCCTTA+AGG + chr3_2:27288703-27288722 Msa0401420:intron 35.0%
! AACCTATTGCCTTAAGGTTT+TGG + chr3_2:27288709-27288728 Msa0401420:intron 35.0%
! ACCTATTGCCTTAAGGTTTT+GGG + chr3_2:27288710-27288729 Msa0401420:intron 35.0%
!! ACTCTAAGGCTGAGTTTAAT+CGG + chr3_2:27288984-27289003 Msa0401420:intron 35.0%
GTAATTCAAAACCGATCACT+CGG - chr3_2:27289217-27289236 None:intergenic 35.0%
AAAAATTCTCAGTGTCTCTC+AGG + chr3_2:27289376-27289395 Msa0401420:intron 35.0%
AGCTTGAAATTTGAACTGTC+GGG + chr3_2:27289555-27289574 Msa0401420:intron 35.0%
AAATTAGAAACAGAAAGCCG+TGG - chr3_2:27289878-27289897 None:intergenic 35.0%
GCTCAAATGAGTAATGGTAT+TGG + chr3_2:27289987-27290006 Msa0401420:intron 35.0%
CATACCTTCAGTATAAGCAT+AGG - chr3_2:27290127-27290146 None:intergenic 35.0%
AGCACAATTTGAGGAAATTG+AGG - chr3_2:27290160-27290179 None:intergenic 35.0%
!! TAAATGTTGCTTTACAGGAC+TGG + chr3_2:27290476-27290495 Msa0401420:intron 35.0%
GCTCAAAAATAGACTCTATG+GGG - chr3_2:27290512-27290531 None:intergenic 35.0%
GTGCTCAAAAATAGACTCTA+TGG - chr3_2:27290514-27290533 None:intergenic 35.0%
ATGTCTTTATGAGCCAAAAG+AGG - chr3_2:27290887-27290906 None:intergenic 35.0%
! GGCGTAAATTAAGTTGTTTC+TGG + chr3_2:27290927-27290946 Msa0401420:intron 35.0%
! ACTTTACCATCTTATCGGTT+GGG - chr3_2:27290969-27290988 None:intergenic 35.0%
TACTTTACCATCTTATCGGT+TGG - chr3_2:27290970-27290989 None:intergenic 35.0%
AAAAATGTGACACACACTAC+TGG + chr3_2:27291251-27291270 Msa0401420:intron 35.0%
GAGCTTAATTTCGTAGTTCA+TGG - chr3_2:27291392-27291411 None:intergenic 35.0%
ACTAACAGACTTAAACCATC+CGG + chr3_2:27291440-27291459 Msa0401420:intron 35.0%
TATGTGAACGATGTAAGTAG+TGG - chr3_2:27291511-27291530 None:intergenic 35.0%
! TGTAGCAGGTTAGTTAGAAT+GGG - chr3_2:27291536-27291555 None:intergenic 35.0%
! ATGTAGCAGGTTAGTTAGAA+TGG - chr3_2:27291537-27291556 None:intergenic 35.0%
ATTCTAACTAACCTGCTACA+TGG + chr3_2:27291536-27291555 Msa0401420:intron 35.0%
! CAATGTTTTATGGGTGTAGA+TGG + chr3_2:27291802-27291821 Msa0401420:intron 35.0%
TATGCCTTCATCATTGACAT+TGG - chr3_2:27291836-27291855 None:intergenic 35.0%
ACAAAAGGTTGAATACCTGT+GGG - chr3_2:27291970-27291989 None:intergenic 35.0%
TACAAAAGGTTGAATACCTG+TGG - chr3_2:27291971-27291990 None:intergenic 35.0%
AGGTATCATCTAACTGAGTA+TGG + chr3_2:27292197-27292216 Msa0401420:intron 35.0%
! GATACTTGCTTTGCAAGTTT+TGG + chr3_2:27292411-27292430 Msa0401420:CDS 35.0%
! GATCTATTTTCACTTCTTCC+AGG - chr3_2:27292516-27292535 None:intergenic 35.0%
AATAGAAACAGCTTCTGCAT+GGG - chr3_2:27292577-27292596 None:intergenic 35.0%
AAATAGAAACAGCTTCTGCA+TGG - chr3_2:27292578-27292597 None:intergenic 35.0%
TATTTACCGAAGCAAGTACA+AGG + chr3_2:27292593-27292612 Msa0401420:CDS 35.0%
TAAGACTTGCACAATAGTTG+AGG + chr3_2:27292772-27292791 Msa0401420:intron 35.0%
CTTTATTCTCTTGATGTTCC+AGG + chr3_2:27292800-27292819 Msa0401420:intron 35.0%
TCGTGAACACTAGAAATTGA+AGG + chr3_2:27293152-27293171 Msa0401420:intron 35.0%
ACACTAGAAATTGAAGGTTG+AGG + chr3_2:27293158-27293177 Msa0401420:intron 35.0%
AGGTTGAGGATATTTAACCT+TGG + chr3_2:27293172-27293191 Msa0401420:intron 35.0%
GGATAGTCTCCATAATATAG+TGG - chr3_2:27293248-27293267 None:intergenic 35.0%
ACCTCGTTGTATAGTGATTT+AGG - chr3_2:27293361-27293380 None:intergenic 35.0%
CTTGTCGTAATGACATTCTT+CGG - chr3_2:27293408-27293427 None:intergenic 35.0%
GAAAAACAGCTCAATCATCA+AGG - chr3_2:27293508-27293527 None:intergenic 35.0%
!!! AGCTGTTTTTCACAGTTGAA+TGG + chr3_2:27293517-27293536 Msa0401420:intron 35.0%
!!! GCTGTTTTTCACAGTTGAAT+GGG + chr3_2:27293518-27293537 Msa0401420:intron 35.0%
! TTTTTCACAGTTGAATGGGA+AGG + chr3_2:27293522-27293541 Msa0401420:intron 35.0%
AGAAAGTCACATACCATTCT+CGG - chr3_2:27293766-27293785 None:intergenic 35.0%
AACCACTCGATAGAAAATTG+AGG + chr3_2:27293825-27293844 Msa0401420:intron 35.0%
ACCACTCGATAGAAAATTGA+GGG + chr3_2:27293826-27293845 Msa0401420:intron 35.0%
CGAGTGTGAGTTATGTTATA+TGG + chr3_2:27294221-27294240 Msa0401420:intron 35.0%
CAACCTTATGCTATCTAATC+AGG - chr3_2:27294320-27294339 None:intergenic 35.0%
GTCTTTCCATTTAACAGGTA+TGG + chr3_2:27294446-27294465 Msa0401420:intron 35.0%
CATCATCCATACCTGTTAAA+TGG - chr3_2:27294455-27294474 None:intergenic 35.0%
TCATCTAGCATCTCATTTAG+TGG - chr3_2:27294495-27294514 None:intergenic 35.0%
GCTTATCATGTGTAACAAAC+AGG + chr3_2:27294740-27294759 Msa0401420:intron 35.0%
CATTACTTGACAACTTCGAA+TGG + chr3_2:27295332-27295351 Msa0401420:CDS 35.0%
ACCAATATGCAGAAGACTTT+GGG - chr3_2:27295423-27295442 None:intergenic 35.0%
AACCAATATGCAGAAGACTT+TGG - chr3_2:27295424-27295443 None:intergenic 35.0%
! TTTTCGCGGTTTCTTAAAGA+TGG + chr3_2:27295442-27295461 Msa0401420:CDS 35.0%
TTTCGCGGTTTCTTAAAGAT+GGG + chr3_2:27295443-27295462 Msa0401420:CDS 35.0%
! TTGGTGCTTGAAACGCTATT+TGG + chr3_2:27286927-27286946 Msa0401420:intron 40.0%
AACTCTGTAACTTTGTCGAG+TGG - chr3_2:27287046-27287065 None:intergenic 40.0%
TAACACCCATGCATAGAAGA+GGG + chr3_2:27287127-27287146 Msa0401420:intron 40.0%
AACTTGACACTATCCAACAG+AGG + chr3_2:27287217-27287236 Msa0401420:intron 40.0%
! TTGTGTTTGGCTCATTTGGA+AGG - chr3_2:27287287-27287306 None:intergenic 40.0%
! ATGCTTGTGTTTGGCTCATT+TGG - chr3_2:27287291-27287310 None:intergenic 40.0%
AGAAAAGAGTGAGTAGAACG+CGG + chr3_2:27287325-27287344 Msa0401420:intron 40.0%
CCGCTAAATTACCAAACTGA+TGG + chr3_2:27287353-27287372 Msa0401420:intron 40.0%
AGATTGTCACGAACCATATC+TGG + chr3_2:27287376-27287395 Msa0401420:intron 40.0%
CTTGTTCATACCTCCAGATA+TGG - chr3_2:27287392-27287411 None:intergenic 40.0%
! GTGATACTTTTGGCGACTTA+TGG - chr3_2:27287441-27287460 None:intergenic 40.0%
! TTCTTCCGCTGTGATACTTT+TGG - chr3_2:27287451-27287470 None:intergenic 40.0%
ATGACATTACTTGTGTGGGT+GGG - chr3_2:27287504-27287523 None:intergenic 40.0%
CCATGATGACATTACTTGTG+TGG - chr3_2:27287509-27287528 None:intergenic 40.0%
CCACACAAGTAATGTCATCA+TGG + chr3_2:27287506-27287525 Msa0401420:intron 40.0%
CGAAGGAGGTTATCTTTAGT+CGG + chr3_2:27287544-27287563 Msa0401420:intron 40.0%
GAAGGAGGTTATCTTTAGTC+GGG + chr3_2:27287545-27287564 Msa0401420:intron 40.0%
AAATAAAGGGGCGATAGTGA+AGG - chr3_2:27287878-27287897 None:intergenic 40.0%
TCAGATAACTCAAAAAGGCG+GGG + chr3_2:27287898-27287917 Msa0401420:intron 40.0%
TGGTTAGATAATTGGTTGGG+GGG - chr3_2:27287946-27287965 None:intergenic 40.0%
!! GAGGGTCTAGCACTTATTTT+TGG - chr3_2:27287966-27287985 None:intergenic 40.0%
GGTTTGAGGATAATTTCCGT+AGG - chr3_2:27287999-27288018 None:intergenic 40.0%
TTTAGGTGTTAGGAGGATGA+GGG - chr3_2:27288198-27288217 None:intergenic 40.0%
CTATGTTTATCGAAGGAGGA+AGG - chr3_2:27288224-27288243 None:intergenic 40.0%
GAAAATTTCATGGGTAGGGT+GGG - chr3_2:27288252-27288271 None:intergenic 40.0%
AGAAAATTTCATGGGTAGGG+TGG - chr3_2:27288253-27288272 None:intergenic 40.0%
GGAAGAAATTATACCTGTGG+GGG + chr3_2:27288320-27288339 Msa0401420:intron 40.0%
AGGAAAGAAAGTAAACCGGT+AGG + chr3_2:27288352-27288371 Msa0401420:intron 40.0%
GGAAAGAAAGTAAACCGGTA+GGG + chr3_2:27288353-27288372 Msa0401420:intron 40.0%
ATGACAGGACAGATTTCTGA+AGG + chr3_2:27288376-27288395 Msa0401420:intron 40.0%
! CCTTACCTTTTGTGTTCTTG+GGG - chr3_2:27288518-27288537 None:intergenic 40.0%
ACCCAAAACCTTAAGGCAAT+AGG - chr3_2:27288714-27288733 None:intergenic 40.0%
CACTCTTACCCAAAACCTTA+AGG - chr3_2:27288721-27288740 None:intergenic 40.0%
TATAGATGTTGGGTCACTGA+GGG - chr3_2:27288803-27288822 None:intergenic 40.0%
TAATCGGCAACTAGCAAATG+AGG + chr3_2:27289000-27289019 Msa0401420:intron 40.0%
AACTAATGATGTGGCAATCC+CGG - chr3_2:27289041-27289060 None:intergenic 40.0%
TAGGGGCGATATTGAGATAA+TGG + chr3_2:27289400-27289419 Msa0401420:intron 40.0%
!! GGTATTGGTAGGCGATTATA+TGG + chr3_2:27290002-27290021 Msa0401420:intron 40.0%
!! ATAGATAGAAGGTGCTAGCA+AGG + chr3_2:27290071-27290090 Msa0401420:intron 40.0%
TGGTAGAGGTCCTAGTATAT+GGG + chr3_2:27290098-27290117 Msa0401420:CDS 40.0%
GATGCCTATGCTTATACTGA+AGG + chr3_2:27290120-27290139 Msa0401420:CDS 40.0%
!! GGAGGAGTTGATAAACTTCT+AGG - chr3_2:27290832-27290851 None:intergenic 40.0%
!! TGAACATGTATTGATGACGG+AGG - chr3_2:27290850-27290869 None:intergenic 40.0%
AAATTGCACTCTCTCCTATC+TGG - chr3_2:27291074-27291093 None:intergenic 40.0%
AAATGAAGCAGGGAATACAC+AGG + chr3_2:27291167-27291186 Msa0401420:intron 40.0%
GAATACACAGGCTTTACCAT+AGG + chr3_2:27291179-27291198 Msa0401420:intron 40.0%
TAACAAACTAGCCATGTAGC+AGG - chr3_2:27291550-27291569 None:intergenic 40.0%
! ACTCTGTAGTGTGAGAGTAT+GGG - chr3_2:27291583-27291602 None:intergenic 40.0%
AACTCTGTAGTGTGAGAGTA+TGG - chr3_2:27291584-27291603 None:intergenic 40.0%
TTTATGGGTGTAGATGGCTT+AGG + chr3_2:27291808-27291827 Msa0401420:intron 40.0%
GGAACCAATGTCAATGATGA+AGG + chr3_2:27291829-27291848 Msa0401420:CDS 40.0%
! ATTGACTCATCAAGATGCAG+TGG - chr3_2:27292015-27292034 None:intergenic 40.0%
ACTGCATCTTGATGAGTCAA+TGG + chr3_2:27292014-27292033 Msa0401420:CDS 40.0%
CTGCATCTTGATGAGTCAAT+GGG + chr3_2:27292015-27292034 Msa0401420:CDS 40.0%
TTGGCATCAGATACTTCGTA+AGG - chr3_2:27292233-27292252 None:intergenic 40.0%
CTGAATGCAGTGTACATATG+TGG + chr3_2:27292356-27292375 Msa0401420:intron 40.0%
TTGGCGATAGAGTGAAAAAC+TGG + chr3_2:27292430-27292449 Msa0401420:CDS 40.0%
! TGATGATGTGCTGCTAAGTA+TGG - chr3_2:27292546-27292565 None:intergenic 40.0%
AGCAGCACATCATCAAATCT+TGG + chr3_2:27292551-27292570 Msa0401420:CDS 40.0%
GTTTGACCTTGTACTTGCTT+CGG - chr3_2:27292602-27292621 None:intergenic 40.0%
AATGAGAGTAGTTGCCATGT+AGG - chr3_2:27292720-27292739 None:intergenic 40.0%
TTGATGTTCCAGGATAAGCA+AGG + chr3_2:27292810-27292829 Msa0401420:intron 40.0%
TGATGTTCCAGGATAAGCAA+GGG + chr3_2:27292811-27292830 Msa0401420:intron 40.0%
! AGACACCTAGATTTTCGTCT+TGG + chr3_2:27292912-27292931 Msa0401420:CDS 40.0%
GTGTGGACACAAACTTACAA+AGG + chr3_2:27293024-27293043 Msa0401420:intron 40.0%
CTCAAAACAGCAAAAGGTCT+TGG + chr3_2:27293115-27293134 Msa0401420:intron 40.0%
TAAGCATGCATCTTACACCA+AGG - chr3_2:27293192-27293211 None:intergenic 40.0%
!! ATATAGTGGATGCAAGAACC+TGG - chr3_2:27293234-27293253 None:intergenic 40.0%
TTATCCTCCTCCGAGAATTT+GGG - chr3_2:27293305-27293324 None:intergenic 40.0%
TTTATCCTCCTCCGAGAATT+TGG - chr3_2:27293306-27293325 None:intergenic 40.0%
GCCTAAATCACTATACAACG+AGG + chr3_2:27293357-27293376 Msa0401420:CDS 40.0%
CGAAGAATGTCATTACGACA+AGG + chr3_2:27293406-27293425 Msa0401420:CDS 40.0%
TACCATCTATGTCTCTCTGT+CGG + chr3_2:27293572-27293591 Msa0401420:intron 40.0%
AGTGGCTATATGTTGTTCCT+TGG + chr3_2:27293682-27293701 Msa0401420:intron 40.0%
GTGGCTATATGTTGTTCCTT+GGG + chr3_2:27293683-27293702 Msa0401420:intron 40.0%
TGGCTATATGTTGTTCCTTG+GGG + chr3_2:27293684-27293703 Msa0401420:intron 40.0%
CCATTCTCGGTGACATATAT+CGG - chr3_2:27293753-27293772 None:intergenic 40.0%
! TCCCTCAATTTTCTATCGAG+TGG - chr3_2:27293830-27293849 None:intergenic 40.0%
!! TTGGTTCTACACAAATGGGT+TGG - chr3_2:27294023-27294042 None:intergenic 40.0%
AAACGATAGAAGGGGACAAA+AGG - chr3_2:27294064-27294083 None:intergenic 40.0%
!! TATTTTGAGAGCTGCAACCT+AGG + chr3_2:27294272-27294291 Msa0401420:intron 40.0%
TATGTCAACAATAGGATCCG+CGG + chr3_2:27294344-27294363 Msa0401420:intron 40.0%
CATCTATTAAATCAGAGCCG+CGG - chr3_2:27294364-27294383 None:intergenic 40.0%
AGGCTGTCTTTCCATTTAAC+AGG + chr3_2:27294441-27294460 Msa0401420:intron 40.0%
AGGTGTGTGTGAGAAGAAAA+TGG - chr3_2:27294584-27294603 None:intergenic 40.0%
! ACTGGTTTAACTCGTAGATG+AGG - chr3_2:27294604-27294623 None:intergenic 40.0%
ACTCGGTCAGTTGTTATGTT+AGG - chr3_2:27295198-27295217 None:intergenic 40.0%
ATCATTTGAATGCACAGGGA+TGG + chr3_2:27295280-27295299 Msa0401420:intron 40.0%
CAAGGTTATACCAAACGCTT+CGG + chr3_2:27295358-27295377 Msa0401420:CDS 40.0%
TTATACCAAACGCTTCGGAT+TGG + chr3_2:27295363-27295382 Msa0401420:CDS 40.0%
ACCCAAAGTCTTCTGCATAT+TGG + chr3_2:27295419-27295438 Msa0401420:CDS 40.0%
!!! CTTCTGCATATTGGTTTTCG+CGG + chr3_2:27295428-27295447 Msa0401420:CDS 40.0%
TTCGCGGTTTCTTAAAGATG+GGG + chr3_2:27295444-27295463 Msa0401420:CDS 40.0%
TAAAGATGGGGCAAACAAGA+AGG + chr3_2:27295456-27295475 Msa0401420:CDS 40.0%
AAAGATGGGGCAAACAAGAA+GGG + chr3_2:27295457-27295476 Msa0401420:CDS 40.0%
ATCAAGCAATTGAGCTCAAG+TGG + chr3_2:27295702-27295721 Msa0401420:three_prime_UTR 40.0%
TTCCCTTCCGATTTCGTCTT+CGG + chr3_2:27286840-27286859 Msa0401420:CDS 45.0%
CAAAGGAACCTGATAAGCAG+AGG - chr3_2:27286874-27286893 None:intergenic 45.0%
AGAGAGATTCAACTCGCACA+AGG + chr3_2:27287007-27287026 Msa0401420:intron 45.0%
CTAACACCCATGCATAGAAG+AGG + chr3_2:27287126-27287145 Msa0401420:intron 45.0%
! TTTCAGTTACTGACTGGTGG+CGG - chr3_2:27287155-27287174 None:intergenic 45.0%
CACCAGTCAGTAACTGAAAG+CGG + chr3_2:27287156-27287175 Msa0401420:intron 45.0%
TTCCGCTTTCAGTTACTGAC+TGG - chr3_2:27287161-27287180 None:intergenic 45.0%
CGTGACAATCTCCATCAGTT+TGG - chr3_2:27287367-27287386 None:intergenic 45.0%
TTGTCACGAACCATATCTGG+AGG + chr3_2:27287379-27287398 Msa0401420:intron 45.0%
TATGGCTTCATGTCTACCAG+TGG - chr3_2:27287423-27287442 None:intergenic 45.0%
!! AGTCGCCAAAAGTATCACAG+CGG + chr3_2:27287443-27287462 Msa0401420:intron 45.0%
AAGAGATGATGCGATGTCTC+CGG + chr3_2:27287469-27287488 Msa0401420:intron 45.0%
GATGACATTACTTGTGTGGG+TGG - chr3_2:27287505-27287524 None:intergenic 45.0%
TACTCTTGACAAGTGGCAGT+GGG - chr3_2:27287728-27287747 None:intergenic 45.0%
TTAGATAATTGGTTGGGGGG+AGG - chr3_2:27287943-27287962 None:intergenic 45.0%
GATAATTTCCGTAGGGTGGT+TGG - chr3_2:27287991-27288010 None:intergenic 45.0%
TGAGGATAATTTCCGTAGGG+TGG - chr3_2:27287995-27288014 None:intergenic 45.0%
AGAGTCCTAAAGGCGAGATA+TGG - chr3_2:27288107-27288126 None:intergenic 45.0%
! TTGGCGTATGTTGGTTGACA+GGG - chr3_2:27288144-27288163 None:intergenic 45.0%
CTCTTATAGGGAAGTGGTGT+TGG - chr3_2:27288163-27288182 None:intergenic 45.0%
ATGTCGCTCTTATAGGGAAG+TGG - chr3_2:27288169-27288188 None:intergenic 45.0%
GTTTAGGTGTTAGGAGGATG+AGG - chr3_2:27288199-27288218 None:intergenic 45.0%
AAGGTGGTTTAGGTGTTAGG+AGG - chr3_2:27288205-27288224 None:intergenic 45.0%
AGGAAGGTGGTTTAGGTGTT+AGG - chr3_2:27288208-27288227 None:intergenic 45.0%
TGTTTATCGAAGGAGGAAGG+TGG - chr3_2:27288221-27288240 None:intergenic 45.0%
!!! ATTTTTTTTGGGGGGTGGTG+AGG - chr3_2:27288282-27288301 None:intergenic 45.0%
! GGACAGATTTCTGAAGGATC+AGG + chr3_2:27288382-27288401 Msa0401420:intron 45.0%
CTCCAAAATTCCAGCTTACG+CGG + chr3_2:27288474-27288493 Msa0401420:intron 45.0%
! ATCCGCGTAAGCTGGAATTT+TGG - chr3_2:27288479-27288498 None:intergenic 45.0%
CCCCAAGAACACAAAAGGTA+AGG + chr3_2:27288515-27288534 Msa0401420:intron 45.0%
ACACTTGCACACAAGTGTCT+GGG - chr3_2:27288638-27288657 None:intergenic 45.0%
TAGTGTCTCTCTCGCTTATG+CGG + chr3_2:27288741-27288760 Msa0401420:intron 45.0%
GTATAGATGTTGGGTCACTG+AGG - chr3_2:27288804-27288823 None:intergenic 45.0%
GGTGGGACTAACTAATGATG+TGG - chr3_2:27289050-27289069 None:intergenic 45.0%
GGAAGACACTGAGAATGAGA+AGG - chr3_2:27289338-27289357 None:intergenic 45.0%
AATCTCTACGTTCGTGGACT+CGG - chr3_2:27289606-27289625 None:intergenic 45.0%
!! ATAGAAGGTGCTAGCAAGGA+GGG + chr3_2:27290075-27290094 Msa0401420:CDS 45.0%
GTGGTAGAGGTCCTAGTATA+TGG + chr3_2:27290097-27290116 Msa0401420:CDS 45.0%
GCATAGGCATCCCATATACT+AGG - chr3_2:27290111-27290130 None:intergenic 45.0%
! GCATCAAGGAGCACAATTTG+AGG - chr3_2:27290169-27290188 None:intergenic 45.0%
!! GTAAGCGTTGAAACCCAACT+TGG - chr3_2:27290683-27290702 None:intergenic 45.0%
! TCTTGGTCTCGTATTTTCCC+TGG + chr3_2:27290715-27290734 Msa0401420:CDS 45.0%
TTCTAGGCTTAAGGCTCTCA+TGG - chr3_2:27290816-27290835 None:intergenic 45.0%
! TTTCTGGGAGGGAATTGCTT+TGG + chr3_2:27290943-27290962 Msa0401420:intron 45.0%
! TTTTCGTCTTACCGCCAGAT+AGG + chr3_2:27291057-27291076 Msa0401420:intron 45.0%
CACAGGCTTTACCATAGGAA+AGG + chr3_2:27291184-27291203 Msa0401420:intron 45.0%
! GGTAAAGGTTTGGAGCCATT+TGG - chr3_2:27291477-27291496 None:intergenic 45.0%
! CTCTGTAGTGTGAGAGTATG+GGG - chr3_2:27291582-27291601 None:intergenic 45.0%
CATCTTGATGAGTCAATGGG+AGG + chr3_2:27292018-27292037 Msa0401420:CDS 45.0%
TTGATGAGTCAATGGGAGGA+TGG + chr3_2:27292022-27292041 Msa0401420:CDS 45.0%
GATGTTCCAGGATAAGCAAG+GGG + chr3_2:27292812-27292831 Msa0401420:intron 45.0%
ATGTTCCAGGATAAGCAAGG+GGG + chr3_2:27292813-27292832 Msa0401420:intron 45.0%
GCTGGTTGTAGACTCTGAAT+GGG + chr3_2:27292845-27292864 Msa0401420:CDS 45.0%
! ACCTAGATTTTCGTCTTGGC+TGG + chr3_2:27292916-27292935 Msa0401420:CDS 45.0%
ACCAGCCAAGACGAAAATCT+AGG - chr3_2:27292920-27292939 None:intergenic 45.0%
AGTCGTTCACGCATAACTTC+AGG - chr3_2:27293269-27293288 None:intergenic 45.0%
GAAGTTATGCGTGAACGACT+TGG + chr3_2:27293269-27293288 Msa0401420:CDS 45.0%
! AGACCGACTTCCCAAATTCT+CGG + chr3_2:27293292-27293311 Msa0401420:CDS 45.0%
TTCACAGTTGAATGGGAAGG+CGG + chr3_2:27293525-27293544 Msa0401420:intron 45.0%
TATAACAGGCAGCATCAGAG+TGG + chr3_2:27293664-27293683 Msa0401420:intron 45.0%
ATGTTGTTCCTTGGGGTCTT+CGG + chr3_2:27293691-27293710 Msa0401420:intron 45.0%
CCGATATATGTCACCGAGAA+TGG + chr3_2:27293750-27293769 Msa0401420:intron 45.0%
TATGGCTCAACAAGGAAGAG+TGG + chr3_2:27294239-27294258 Msa0401420:intron 45.0%
CTGCAACCTAGGAATATGAC+TGG + chr3_2:27294283-27294302 Msa0401420:intron 45.0%
ACCTAGGAATATGACTGGCA+TGG + chr3_2:27294288-27294307 Msa0401420:intron 45.0%
ACTGCGAGTTCGCTATTACA+AGG + chr3_2:27294518-27294537 Msa0401420:CDS 45.0%
CTGCGAGTTCGCTATTACAA+GGG + chr3_2:27294519-27294538 Msa0401420:CDS 45.0%
ATACCTTGCATCACTTGTGC+AGG + chr3_2:27294542-27294561 Msa0401420:CDS 45.0%
TTAGAACAGGGTCAGACACT+TGG + chr3_2:27295045-27295064 Msa0401420:intron 45.0%
GGTCAGTTGTTATGTTAGGC+TGG - chr3_2:27295194-27295213 None:intergenic 45.0%
ATGTGAGAGGACACTTTGCA+TGG + chr3_2:27295308-27295327 Msa0401420:CDS 45.0%
! ATAGACCAATCCGAAGCGTT+TGG - chr3_2:27295371-27295390 None:intergenic 45.0%
!!! TTTATTTAAAATTTTTTTTG+GGG - chr3_2:27288292-27288311 None:intergenic 5.0%
!!! CTTTATTTAAAATTTTTTTT+GGG - chr3_2:27288293-27288312 None:intergenic 5.0%
!!! TCTTTATTTAAAATTTTTTT+TGG - chr3_2:27288294-27288313 None:intergenic 5.0%
!!! TTAAAAAATATTTTTTTTAG+AGG - chr3_2:27289140-27289159 None:intergenic 5.0%
!! AATAAAATATAAATATGATT+TGG + chr3_2:27289183-27289202 Msa0401420:intron 5.0%
!!! TTTTTATTTTATTTTTTTGA+AGG - chr3_2:27289359-27289378 None:intergenic 5.0%
CTCCGAAGACGAAATCGGAA+GGG - chr3_2:27286845-27286864 None:intergenic 50.0%
ACTCCGAAGACGAAATCGGA+AGG - chr3_2:27286846-27286865 None:intergenic 50.0%
AGGAACCTGATAAGCAGAGG+TGG - chr3_2:27286871-27286890 None:intergenic 50.0%
! TTCAGTTACTGACTGGTGGC+GGG - chr3_2:27287154-27287173 None:intergenic 50.0%
! CGCTTTCAGTTACTGACTGG+TGG - chr3_2:27287158-27287177 None:intergenic 50.0%
CTTCATGTCTACCAGTGGCT+CGG - chr3_2:27287418-27287437 None:intergenic 50.0%
ATTACTTGTGTGGGTGGGTG+TGG - chr3_2:27287499-27287518 None:intergenic 50.0%
! CTTTAGTCGGGAGCATGTTG+CGG + chr3_2:27287557-27287576 Msa0401420:intron 50.0%
CCAAGCTGCATCATACAGAC+CGG + chr3_2:27287627-27287646 Msa0401420:intron 50.0%
CTACTCTTGACAAGTGGCAG+TGG - chr3_2:27287729-27287748 None:intergenic 50.0%
GCTGATAGAGGATGGGATGT+CGG - chr3_2:27287850-27287869 None:intergenic 50.0%
GGAGATGGCTGATAGAGGAT+GGG - chr3_2:27287857-27287876 None:intergenic 50.0%
AGGAGATGGCTGATAGAGGA+TGG - chr3_2:27287858-27287877 None:intergenic 50.0%
GTGAAGGAGATGGCTGATAG+AGG - chr3_2:27287862-27287881 None:intergenic 50.0%
AATTTCCGTAGGGTGGTTGG+TGG - chr3_2:27287988-27288007 None:intergenic 50.0%
! TTCGTAGAGGTGCAGGGTTA+GGG - chr3_2:27288032-27288051 None:intergenic 50.0%
! ATTCGTAGAGGTGCAGGGTT+AGG - chr3_2:27288033-27288052 None:intergenic 50.0%
! GTGGTATTCGTAGAGGTGCA+GGG - chr3_2:27288038-27288057 None:intergenic 50.0%
! TGTGGTATTCGTAGAGGTGC+AGG - chr3_2:27288039-27288058 None:intergenic 50.0%
! GTGTGGTGGAGGATATTGTG+TGG - chr3_2:27288057-27288076 None:intergenic 50.0%
AAGGCGAGATATGGAGAGGA+GGG - chr3_2:27288098-27288117 None:intergenic 50.0%
AAAGGCGAGATATGGAGAGG+AGG - chr3_2:27288099-27288118 None:intergenic 50.0%
CCTAAAGGCGAGATATGGAG+AGG - chr3_2:27288102-27288121 None:intergenic 50.0%
CCTCTCCATATCTCGCCTTT+AGG + chr3_2:27288099-27288118 Msa0401420:intron 50.0%
! TGGTTGACAGGGATGGACTT+TGG - chr3_2:27288133-27288152 None:intergenic 50.0%
! CGTATGTTGGTTGACAGGGA+TGG - chr3_2:27288140-27288159 None:intergenic 50.0%
! GTTGGCGTATGTTGGTTGAC+AGG - chr3_2:27288145-27288164 None:intergenic 50.0%
!! GAAGTGGTGTTGGCGTATGT+TGG - chr3_2:27288153-27288172 None:intergenic 50.0%
TCGAAGGAGGAAGGTGGTTT+AGG - chr3_2:27288215-27288234 None:intergenic 50.0%
AGTAAACCGGTAGGGATGAC+AGG + chr3_2:27288361-27288380 Msa0401420:intron 50.0%
ATCTGTCCTGTCATCCCTAC+CGG - chr3_2:27288370-27288389 None:intergenic 50.0%
TTACGCGGATACCCTCCTAT+AGG + chr3_2:27288489-27288508 Msa0401420:intron 50.0%
CACACTTGCACACAAGTGTC+TGG - chr3_2:27288639-27288658 None:intergenic 50.0%
TCTCGCTTATGCGGTTGATC+TGG + chr3_2:27288750-27288769 Msa0401420:intron 50.0%
!! GGTTGATCTGGCCTTGATGT+GGG + chr3_2:27288762-27288781 Msa0401420:intron 50.0%
GAGGTAGTTCACGTTCTTGC+CGG + chr3_2:27289019-27289038 Msa0401420:intron 50.0%
AGGTAGTTCACGTTCTTGCC+GGG + chr3_2:27289020-27289039 Msa0401420:intron 50.0%
! TGGTTTGGGTTCCGAGTGAT+CGG + chr3_2:27289203-27289222 Msa0401420:intron 50.0%
TTCTCAGTGTCTCTCAGGCT+AGG + chr3_2:27289381-27289400 Msa0401420:intron 50.0%
TCTCAGTGTCTCTCAGGCTA+GGG + chr3_2:27289382-27289401 Msa0401420:intron 50.0%
!! GATAGAAGGTGCTAGCAAGG+AGG + chr3_2:27290074-27290093 Msa0401420:intron 50.0%
GCTTAAGGCTCTCATGGACA+TGG - chr3_2:27290810-27290829 None:intergenic 50.0%
CTTTGGCCCAACCGATAAGA+TGG + chr3_2:27290960-27290979 Msa0401420:intron 50.0%
TTGCACTCTCTCCTATCTGG+CGG - chr3_2:27291071-27291090 None:intergenic 50.0%
! GGTTTGGAGCCATTTGGCTT+GGG - chr3_2:27291471-27291490 None:intergenic 50.0%
! AGGTTTGGAGCCATTTGGCT+TGG - chr3_2:27291472-27291491 None:intergenic 50.0%
GATGCAGTGGAAGATCCCAA+TGG - chr3_2:27292002-27292021 None:intergenic 50.0%
AGCATCATACCCACCAACTG+CGG - chr3_2:27292481-27292500 None:intergenic 50.0%
GATGCTGGAGTTAATGCTCC+TGG + chr3_2:27292495-27292514 Msa0401420:CDS 50.0%
GATAAGCAAGGGGGACAAGT+GGG + chr3_2:27292822-27292841 Msa0401420:CDS 50.0%
ATAAGCAAGGGGGACAAGTG+GGG + chr3_2:27292823-27292842 Msa0401420:CDS 50.0%
! GGCTGGTTGTAGACTCTGAA+TGG + chr3_2:27292844-27292863 Msa0401420:CDS 50.0%
CCTCCGAGAATTTGGGAAGT+CGG - chr3_2:27293298-27293317 None:intergenic 50.0%
ACTTCCCAAATTCTCGGAGG+AGG + chr3_2:27293298-27293317 Msa0401420:CDS 50.0%
TTACGACAAGGCACAACAGC+TGG + chr3_2:27293418-27293437 Msa0401420:CDS 50.0%
GCACAACAGCTGGACAGAAT+TGG + chr3_2:27293428-27293447 Msa0401420:CDS 50.0%
TCACAGTTGAATGGGAAGGC+GGG + chr3_2:27293526-27293545 Msa0401420:intron 50.0%
CACCGACAGAGAGACATAGA+TGG - chr3_2:27293577-27293596 None:intergenic 50.0%
ATAGTCTTCCGAAGACCCCA+AGG - chr3_2:27293702-27293721 None:intergenic 50.0%
GCCATGCCAGTCATATTCCT+AGG - chr3_2:27294292-27294311 None:intergenic 50.0%
TAGCCTGCACAAGTGATGCA+AGG - chr3_2:27294548-27294567 None:intergenic 50.0%
! GACAACTTCGAATGGGCTCA+AGG + chr3_2:27295340-27295359 Msa0401420:CDS 50.0%
GGCGACTCCGAAGACGAAAT+CGG - chr3_2:27286850-27286869 None:intergenic 55.0%
AGTCGCCACCTCTGCTTATC+AGG + chr3_2:27286863-27286882 Msa0401420:CDS 55.0%
CGGGACCCTCTTCTATGCAT+GGG - chr3_2:27287135-27287154 None:intergenic 55.0%
CAAGGAAGTCGGTCCTCTGT+TGG - chr3_2:27287233-27287252 None:intergenic 55.0%
! CAACAGAGGACCGACTTCCT+TGG + chr3_2:27287231-27287250 Msa0401420:intron 55.0%
TGAACAAGATGCCGAGCCAC+TGG + chr3_2:27287404-27287423 Msa0401420:intron 55.0%
GGTGAAGAGCTCTTCTGCGA+AGG + chr3_2:27287527-27287546 Msa0401420:intron 55.0%
GAAGAGCTCTTCTGCGAAGG+AGG + chr3_2:27287530-27287549 Msa0401420:intron 55.0%
CCGGTCTGTATGATGCAGCT+TGG - chr3_2:27287630-27287649 None:intergenic 55.0%
TCATACAGACCGGTCTCCAC+AGG + chr3_2:27287637-27287656 Msa0401420:intron 55.0%
CCTACTACACCTGTGGAGAC+CGG - chr3_2:27287649-27287668 None:intergenic 55.0%
GACGCTTCCTACTACACCTG+TGG - chr3_2:27287656-27287675 None:intergenic 55.0%
!! CAGGTGTAGTAGGAAGCGTC+AGG + chr3_2:27287656-27287675 Msa0401420:intron 55.0%
CAAGGACGAACACTCCGACA+CGG + chr3_2:27287774-27287793 Msa0401420:intron 55.0%
GATAGAGGATGGGATGTCGG+TGG - chr3_2:27287847-27287866 None:intergenic 55.0%
AGGGGCGATAGTGAAGGAGA+TGG - chr3_2:27287872-27287891 None:intergenic 55.0%
CGGGGAAATTGCACTCGCAA+AGG + chr3_2:27287916-27287935 Msa0401420:intron 55.0%
! TCGTAGAGGTGCAGGGTTAG+GGG - chr3_2:27288031-27288050 None:intergenic 55.0%
! TTGAAGGAAGGGTGTGGTGG+AGG - chr3_2:27288068-27288087 None:intergenic 55.0%
AGGGAGGTCGGTTGAAGGAA+GGG - chr3_2:27288079-27288098 None:intergenic 55.0%
GATATGGAGAGGAGGGAGGT+CGG - chr3_2:27288091-27288110 None:intergenic 55.0%
ACCTGTGGGGGCCTTGAAAA+AGG + chr3_2:27288332-27288351 Msa0401420:intron 55.0%
!!! TCCTTTTTCAAGGCCCCCAC+AGG - chr3_2:27288336-27288355 None:intergenic 55.0%
TCTTGGGGCTGCCTATAGGA+GGG - chr3_2:27288503-27288522 None:intergenic 55.0%
TTCTTGGGGCTGCCTATAGG+AGG - chr3_2:27288504-27288523 None:intergenic 55.0%
GTGTTCTTGGGGCTGCCTAT+AGG - chr3_2:27288507-27288526 None:intergenic 55.0%
GGCAGCCCCAAGAACACAAA+AGG + chr3_2:27288510-27288529 Msa0401420:intron 55.0%
CACACAAGTGTCTGGGCTGA+AGG - chr3_2:27288631-27288650 None:intergenic 55.0%
!! CGGTTGATCTGGCCTTGATG+TGG + chr3_2:27288761-27288780 Msa0401420:intron 55.0%
!! TGATCTGGCCTTGATGTGGG+CGG + chr3_2:27288765-27288784 Msa0401420:intron 55.0%
CTCAGTGTCTCTCAGGCTAG+GGG + chr3_2:27289383-27289402 Msa0401420:intron 55.0%
!! CCATTTGGCTTGGGAGGTTC+CGG - chr3_2:27291462-27291481 None:intergenic 55.0%
!! TTGGAGCCATTTGGCTTGGG+AGG - chr3_2:27291468-27291487 None:intergenic 55.0%
CCACCAACTGCGGTTTGAAG+GGG - chr3_2:27292471-27292490 None:intergenic 55.0%
CCCACCAACTGCGGTTTGAA+GGG - chr3_2:27292472-27292491 None:intergenic 55.0%
CCCTTCAAACCGCAGTTGGT+GGG + chr3_2:27292469-27292488 Msa0401420:CDS 55.0%
ACCCACCAACTGCGGTTTGA+AGG - chr3_2:27292473-27292492 None:intergenic 55.0%
!! GCAGTTGGTGGGTATGATGC+TGG + chr3_2:27292480-27292499 Msa0401420:CDS 55.0%
CTTGTCCCCCTTGCTTATCC+TGG - chr3_2:27292821-27292840 None:intergenic 55.0%
GGATAAGCAAGGGGGACAAG+TGG + chr3_2:27292821-27292840 Msa0401420:intron 55.0%
ATCTAGGTGTCTCGCAGCAG+CGG - chr3_2:27292904-27292923 None:intergenic 55.0%
CCGACTTCCCAAATTCTCGG+AGG + chr3_2:27293295-27293314 Msa0401420:CDS 55.0%
CACAGTTGAATGGGAAGGCG+GGG + chr3_2:27293527-27293546 Msa0401420:intron 55.0%
AGGGATGGAGCTGATGTGAG+AGG + chr3_2:27295295-27295314 Msa0401420:intron 55.0%
GCGGGACCCTCTTCTATGCA+TGG - chr3_2:27287136-27287155 None:intergenic 60.0%
CCGGTCTCCACAGGTGTAGT+AGG + chr3_2:27287646-27287665 Msa0401420:intron 60.0%
CTGGGAAGAGGAGTCCGTGT+CGG - chr3_2:27287791-27287810 None:intergenic 60.0%
! GCGTCTGTTAGCCTGGGAAG+AGG - chr3_2:27287803-27287822 None:intergenic 60.0%
!! GAGGAGGCGTCTGTTAGCCT+GGG - chr3_2:27287809-27287828 None:intergenic 60.0%
! GGATGTCGGTGGTGGTGCTT+GGG - chr3_2:27287836-27287855 None:intergenic 60.0%
AGAGGATGGGATGTCGGTGG+TGG - chr3_2:27287844-27287863 None:intergenic 60.0%
ACCCTCCACCAACCACCCTA+CGG + chr3_2:27287980-27287999 Msa0401420:intron 60.0%
!! TCCGTAGGGTGGTTGGTGGA+GGG - chr3_2:27287984-27288003 None:intergenic 60.0%
!! TTCCGTAGGGTGGTTGGTGG+AGG - chr3_2:27287985-27288004 None:intergenic 60.0%
!! AGGGGAGGGGAGTTGGTTTG+AGG - chr3_2:27288013-27288032 None:intergenic 60.0%
! AGAGGTGCAGGGTTAGGGGA+GGG - chr3_2:27288027-27288046 None:intergenic 60.0%
! TAGAGGTGCAGGGTTAGGGG+AGG - chr3_2:27288028-27288047 None:intergenic 60.0%
! CGGTTGAAGGAAGGGTGTGG+TGG - chr3_2:27288071-27288090 None:intergenic 60.0%
GGTCGGTTGAAGGAAGGGTG+TGG - chr3_2:27288074-27288093 None:intergenic 60.0%
GAGGGAGGTCGGTTGAAGGA+AGG - chr3_2:27288080-27288099 None:intergenic 60.0%
AGAGGAGGGAGGTCGGTTGA+AGG - chr3_2:27288084-27288103 None:intergenic 60.0%
GCGAGATATGGAGAGGAGGG+AGG - chr3_2:27288095-27288114 None:intergenic 60.0%
!! AGGAGGGTATCCGCGTAAGC+TGG - chr3_2:27288487-27288506 None:intergenic 60.0%
CAGAGGAACCGCCCACATCA+AGG - chr3_2:27288776-27288795 None:intergenic 60.0%
CTTGATGTGGGCGGTTCCTC+TGG + chr3_2:27288774-27288793 Msa0401420:intron 60.0%
!! GAAGGTGCTAGCAAGGAGGG+TGG + chr3_2:27290078-27290097 Msa0401420:CDS 60.0%
GCTAGCAAGGAGGGTGGTAG+AGG + chr3_2:27290084-27290103 Msa0401420:CDS 60.0%
!! TTGGCTTGGGAGGTTCCGGA+TGG - chr3_2:27291458-27291477 None:intergenic 60.0%
CCGGAACCTCCCAAGCCAAA+TGG + chr3_2:27291459-27291478 Msa0401420:intron 60.0%
GAGCCCCTTCAAACCGCAGT+TGG + chr3_2:27292465-27292484 Msa0401420:CDS 60.0%
CCCCTTCAAACCGCAGTTGG+TGG + chr3_2:27292468-27292487 Msa0401420:CDS 60.0%
CGGGGAGCTCATTGGTGAGA+AGG + chr3_2:27293545-27293564 Msa0401420:intron 60.0%
TGTGGGTGGGTGTGGCTGTC+CGG - chr3_2:27287491-27287510 None:intergenic 65.0%
CGACACGGACTCCTCTTCCC+AGG + chr3_2:27287789-27287808 Msa0401420:intron 65.0%
!! GGAGGAGGCGTCTGTTAGCC+TGG - chr3_2:27287810-27287829 None:intergenic 65.0%
GTGGTGCTTGGGCATGGAGG+AGG - chr3_2:27287825-27287844 None:intergenic 65.0%
! GTGGTGGTGCTTGGGCATGG+AGG - chr3_2:27287828-27287847 None:intergenic 65.0%
! TCGGTGGTGGTGCTTGGGCA+TGG - chr3_2:27287831-27287850 None:intergenic 65.0%
! GGGATGTCGGTGGTGGTGCT+TGG - chr3_2:27287837-27287856 None:intergenic 65.0%
CAGGGTTAGGGGAGGGGAGT+TGG - chr3_2:27288020-27288039 None:intergenic 65.0%
GAGGTGCAGGGTTAGGGGAG+GGG - chr3_2:27288026-27288045 None:intergenic 65.0%
GGGTCACTGAGGGTAGCCAG+AGG - chr3_2:27288793-27288812 None:intergenic 65.0%
TGGGAAGGCGGGGAGCTCAT+TGG + chr3_2:27293537-27293556 Msa0401420:intron 65.0%
GCAAGGGGGACAAGTGGGGC+TGG + chr3_2:27292827-27292846 Msa0401420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 27286765 27295728 27286765 ID=Msa0401420;Name=Msa0401420
chr3_2 mRNA 27286765 27295728 27286765 ID=Msa0401420-mRNA-1;Parent=Msa0401420;Name=Msa0401420-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.8|0.81|1|1|1|11|239|447
chr3_2 exon 27286765 27286884 27286765 ID=Msa0401420-mRNA-1:exon:5655;Parent=Msa0401420-mRNA-1
chr3_2 exon 27290075 27290141 27290075 ID=Msa0401420-mRNA-1:exon:5656;Parent=Msa0401420-mRNA-1
chr3_2 exon 27290223 27290281 27290223 ID=Msa0401420-mRNA-1:exon:5657;Parent=Msa0401420-mRNA-1
chr3_2 exon 27290661 27290736 27290661 ID=Msa0401420-mRNA-1:exon:5658;Parent=Msa0401420-mRNA-1
chr3_2 exon 27291821 27291895 27291821 ID=Msa0401420-mRNA-1:exon:5659;Parent=Msa0401420-mRNA-1
chr3_2 exon 27291974 27292061 27291974 ID=Msa0401420-mRNA-1:exon:5660;Parent=Msa0401420-mRNA-1
chr3_2 exon 27292389 27292614 27292389 ID=Msa0401420-mRNA-1:exon:5661;Parent=Msa0401420-mRNA-1
chr3_2 exon 27292822 27292937 27292822 ID=Msa0401420-mRNA-1:exon:5662;Parent=Msa0401420-mRNA-1
chr3_2 exon 27293235 27293449 27293235 ID=Msa0401420-mRNA-1:exon:5663;Parent=Msa0401420-mRNA-1
chr3_2 exon 27294463 27294571 27294463 ID=Msa0401420-mRNA-1:exon:5664;Parent=Msa0401420-mRNA-1
chr3_2 exon 27295297 27295728 27295297 ID=Msa0401420-mRNA-1:exon:5665;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27286765 27286884 27286765 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27290075 27290141 27290075 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27290223 27290281 27290223 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27290661 27290736 27290661 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27291821 27291895 27291821 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27291974 27292061 27291974 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27292389 27292614 27292389 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27292822 27292937 27292822 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27293235 27293449 27293235 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27294463 27294571 27294463 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 CDS 27295297 27295489 27295297 ID=Msa0401420-mRNA-1:cds;Parent=Msa0401420-mRNA-1
chr3_2 three_prime_UTR 27295490 27295728 27295490 ID=Msa0401420-mRNA-1:three_prime_utr;Parent=Msa0401420-mRNA-1
Gene Sequence

>Msa0401420

ATGGTAAAGAAAGAAGAATTTCTGAGAGAAAATGGTTTTGAGAAAGAAGGACAAGAAGAAGTCTCACGCAGTGACTTCCCTTCCGATTTCGTCTTCGGAGTCGCCACCTCTGCTTATCAGATAGAAGGTGCTAGCAAGGAGGGTGGTAGAGGTCCTAGTATATGGGATGCCTATGCTTATACTGAAGGAAAAATACTCGACAAAAGCAATGGCGATGTAGCAGTTGATCATTATCATCGTTATAAGGAAGATATTGATCTTATAGCCAAGTTGGGTTTCAACGCTTACAGATTTTCAATTTCTTGGTCTCGTATTTTCCCTGATGGCTTAGGAACCAATGTCAATGATGAAGGCATAACATTTTACAACAACATTATCAATGCTCTTCTTGAAAAAGGTATTCAACCTTTTGTAACTTTGTACCATTGGGATCTTCCACTGCATCTTGATGAGTCAATGGGAGGATGGTTGAATAAAAATATCATAGAATATTTTGCAGTCTATGCAGATACTTGCTTTGCAAGTTTTGGCGATAGAGTGAAAAACTGGATTACTATTAACGAGCCCCTTCAAACCGCAGTTGGTGGGTATGATGCTGGAGTTAATGCTCCTGGAAGAAGTGAAAATAGATCAGTAGAACCATACTTAGCAGCACATCATCAAATCTTGGCCCATGCAGAAGCTGTTTCTATTTACCGAAGCAAGTACAAGGATAAGCAAGGGGGACAAGTGGGGCTGGTTGTAGACTCTGAATGGGCAGAGCCAAACTCTGATAAGATTGAAGATAAATCCGCTGCTGCGAGACACCTAGATTTTCGTCTTGGCTGGTTCTTGCATCCACTATATTATGGAGACTATCCTGAAGTTATGCGTGAACGACTTGGAGACCGACTTCCCAAATTCTCGGAGGAGGATAAAAAATTTCTTTTGAATTCTTTGGACTTCATTGGCCTAAATCACTATACAACGAGGTTAATTTCACATGTGACAGAAAGCACCGAAGAATGTCATTACGACAAGGCACAACAGCTGGACAGAATTGGTATGGATGATGAAGACAATGATAGCTTGCCACTAAATGAGATGCTAGATGACAAACTGCGAGTTCGCTATTACAAGGGATACCTTGCATCACTTGTGCAGGCTATAAAGGATGGAGCTGATGTGAGAGGACACTTTGCATGGTCATTACTTGACAACTTCGAATGGGCTCAAGGTTATACCAAACGCTTCGGATTGGTCTATGTAGATTACAAAAATGGACTCACTAGGCACCCAAAGTCTTCTGCATATTGGTTTTCGCGGTTTCTTAAAGATGGGGCAAACAAGAAGGGTAAAGAATAG
Protein sequence

>Msa0401420

MVKKEEFLRENGFEKEGQEEVSRSDFPSDFVFGVATSAYQIEGASKEGGRGPSIWDAYAYTEGKILDKSNGDVAVDHYHRYKEDIDLIAKLGFNAYRFSISWSRIFPDGLGTNVNDEGITFYNNIINALLEKGIQPFVTLYHWDLPLHLDESMGGWLNKNIIEYFAVYADTCFASFGDRVKNWITINEPLQTAVGGYDAGVNAPGRSENRSVEPYLAAHHQILAHAEAVSIYRSKYKDKQGGQVGLVVDSEWAEPNSDKIEDKSAAARHLDFRLGWFLHPLYYGDYPEVMRERLGDRLPKFSEEDKKFLLNSLDFIGLNHYTTRLISHVTESTEECHYDKAQQLDRIGMDDEDNDSLPLNEMLDDKLRVRYYKGYLASLVQAIKDGADVRGHFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLTRHPKSSAYWFSRFLKDGANKKGKE*