AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842790 MtrunA17_Chr5g0413371 91.489 517 40 1 17 533 1 513 0.0 968
Msa0842790 MtrunA17_Chr5g0446171 52.336 214 73 5 1 187 1 212 4.59e-49 170
Msa0842790 MtrunA17_Chr5g0446231 56.316 190 67 4 22 195 1 190 1.20e-46 171
Msa0842790 MtrunA17_Chr5g0446191 55.914 186 66 4 26 195 20 205 7.03e-45 166
Msa0842790 MtrunA17_Chr5g0445771 44.048 168 71 3 4 148 2 169 4.41e-26 112
Msa0842790 MtrunA17_Chr1g0190521 37.324 142 85 3 403 542 193 332 1.61e-19 92.8
Msa0842790 MtrunA17_Chr5g0445861 34.783 207 94 6 1 174 1 199 1.91e-18 87.8
Msa0842790 MtrunA17_Chr1g0193171 28.269 283 168 9 261 535 60 315 2.15e-18 89.0
Msa0842790 MtrunA17_Chr5g0445881 36.702 188 80 5 1 150 1 187 3.10e-17 84.7
Msa0842790 MtrunA17_Chr7g0275141 28.788 132 91 2 404 533 20 150 4.62e-17 84.7
Msa0842790 MtrunA17_Chr5g0445831 37.975 158 94 3 1 155 1 157 1.04e-16 82.8
Msa0842790 MtrunA17_Chr5g0446181 41.401 157 57 5 1 133 1 146 2.58e-16 80.9
Msa0842790 MtrunA17_Chr1g0190511 30.049 203 127 5 353 542 27 227 1.45e-15 80.1
Msa0842790 MtrunA17_Chr4g0049281 33.077 130 84 2 406 533 8 136 1.68e-15 79.7
Msa0842790 MtrunA17_Chr5g0445961 32.663 199 94 4 1 159 1 199 1.06e-14 77.0
Msa0842790 MtrunA17_Chr4g0069321 33.871 124 79 2 410 531 190 312 8.24e-14 74.3
Msa0842790 MtrunA17_Chr8g0338961 31.724 145 95 3 391 533 257 399 1.87e-13 72.8
Msa0842790 MtrunA17_Chr6g0462901 27.692 130 92 2 403 531 405 533 2.79e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842790 AT3G05850.1 35.938 128 79 2 406 531 206 332 3.88e-16 82.4
Msa0842790 AT1G06740.1 27.895 190 122 5 360 542 113 294 7.11e-15 78.2

Find 105 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACTAGTTTAGGGTTT+AGG 0.176375 5_4:+20168205 Msa0842790:CDS
AAGAAGAAGTGACAAAATTT+AGG 0.191462 5_4:-20167813 None:intergenic
GAAAACTAGTTTAGGGTTTA+GGG 0.194561 5_4:+20168206 Msa0842790:CDS
GCGGACCCAGGTTCGGTTTC+GGG 0.195079 5_4:-20167931 None:intergenic
CAATGTTTAGTGGTTTATTT+TGG 0.196890 5_4:+20173257 Msa0842790:three_prime_UTR
ATACCCGCATAACTCATATT+TGG 0.224107 5_4:-20172923 None:intergenic
TCCTGATCGGTACTCCTATT+TGG 0.236061 5_4:+20172118 Msa0842790:CDS
AAACATGATCATTCAGGATT+TGG 0.258278 5_4:+20167978 Msa0842790:CDS
TTTCCTTTGATACCTCTATT+AGG 0.262376 5_4:-20172572 None:intergenic
TGCGGACCCAGGTTCGGTTT+CGG 0.291468 5_4:-20167932 None:intergenic
AGAAGAAGTGACAAAATTTA+GGG 0.299321 5_4:-20167812 None:intergenic
GAAGTTAAGAAAACTAGTTT+AGG 0.304656 5_4:+20168198 Msa0842790:CDS
AAGTTAAGAAAACTAGTTTA+GGG 0.326960 5_4:+20168199 Msa0842790:CDS
AACTCACTAAGTATAATATC+AGG 0.335954 5_4:-20172362 None:intergenic
ATCAATAATGGACTCAATAA+TGG 0.336122 5_4:+20172170 Msa0842790:CDS
TCGGTACTCCTATTTGGATT+TGG 0.336972 5_4:+20172124 Msa0842790:CDS
CATGGAAAACATGATCATTC+AGG 0.341803 5_4:+20167972 Msa0842790:CDS
CTAGAAGTTGGTCTATTGTT+TGG 0.346137 5_4:+20172629 Msa0842790:CDS
GAAGTTAGAAAGCAAGTTAA+AGG 0.346938 5_4:+20172895 Msa0842790:CDS
AGAAAAGAAGAACAATGATT+TGG 0.350025 5_4:+20168245 Msa0842790:CDS
ATCTTATATGTTATCCCATC+TGG 0.354321 5_4:-20172797 None:intergenic
GAAGATGTTGATTCTCTGTT+TGG 0.361541 5_4:-20168080 None:intergenic
TCAACAGAAGTTTCAATTTG+AGG 0.363438 5_4:+20168101 Msa0842790:CDS
AAGAGGGGTTTGAGATTAAG+AGG 0.381353 5_4:+20172696 Msa0842790:CDS
AGTGGATTGGCTATCAATAA+TGG 0.395853 5_4:+20172158 Msa0842790:CDS
AATAAACCCGAAACCGAACC+TGG 0.404728 5_4:+20167925 Msa0842790:CDS
GTCATCAACCAAATCCAAAT+AGG 0.411554 5_4:-20172132 None:intergenic
CAAGAGCTGTTGGATAACTA+TGG 0.418865 5_4:+20172950 Msa0842790:CDS
GGTTTAGTGGAGATGGAGAA+TGG 0.418935 5_4:-20167860 None:intergenic
GGTGATCAAGGTGCATCATT+AGG 0.424389 5_4:+20168486 Msa0842790:CDS
AAATGTACACATCCCATGTT+AGG 0.435203 5_4:-20172047 None:intergenic
TCCAAATAGGAGTACCGATC+AGG 0.438387 5_4:-20172119 None:intergenic
ATATCTGCTCATGAATTTGA+AGG 0.439074 5_4:+20172596 Msa0842790:CDS
GTATATAGCGATTGCTCTGA+TGG 0.440944 5_4:+20173231 Msa0842790:exon
TAAAGTTGACCTACATTACT+TGG 0.445820 5_4:-20172980 None:intergenic
TGGGGTGAAAATTAGTGAGT+TGG 0.449163 5_4:+20168329 Msa0842790:CDS
ACTCAAATGCCACATCTACT+TGG 0.459803 5_4:+20172864 Msa0842790:CDS
GAAGAACAATGATTTGGAGT+TGG 0.466825 5_4:+20168251 Msa0842790:CDS
AGAGATGAAATGTGTGAGAG+AGG 0.467254 5_4:+20168138 Msa0842790:CDS
CATGGGATGTGTACATTTGT+TGG 0.467845 5_4:+20172052 Msa0842790:CDS
TTAGTGAGTTTGATGATGAA+TGG 0.469717 5_4:+20172375 Msa0842790:CDS
AACGTGCGACGTGGCTCGGA+TGG 0.474912 5_4:+20173176 Msa0842790:CDS
GTTTGATGCGGACCCAGGTT+CGG 0.478220 5_4:-20167938 None:intergenic
GGTGAAAATTAGTGAGTTGG+AGG 0.492346 5_4:+20168332 Msa0842790:CDS
TGGCTATGGTACACCTAACA+TGG 0.495098 5_4:+20172034 Msa0842790:CDS
CTGATGGAAACAATGTTTAG+TGG 0.498051 5_4:+20173247 Msa0842790:three_prime_UTR
ATAAATTGACACTTTAACTT+CGG 0.498881 5_4:-20172549 None:intergenic
GCTAAACGTGCGACGTGGCT+CGG 0.499279 5_4:+20173172 Msa0842790:CDS
GAAAGTGATGAAATTCTCTC+AGG 0.500322 5_4:+20172425 Msa0842790:CDS
GATTTGGTTGATGACGTTAG+TGG 0.502716 5_4:+20172140 Msa0842790:CDS
GAGATGAAATGTGTGAGAGA+GGG 0.508464 5_4:+20168139 Msa0842790:CDS
GTGTCAATTTATCCTAATAG+AGG 0.512081 5_4:+20172560 Msa0842790:CDS
TGGTCGTTTGATGCGGACCC+AGG 0.513912 5_4:-20167943 None:intergenic
CATGCATCTCCTGCACCAGA+TGG 0.517694 5_4:+20172782 Msa0842790:CDS
GGTTGATGACGTTAGTGGAT+TGG 0.519283 5_4:+20172145 Msa0842790:CDS
AGTGGGATGACAGAAAGAAA+TGG 0.519842 5_4:-20172207 None:intergenic
GTTTAGTGGAGATGGAGAAT+GGG 0.520708 5_4:-20167859 None:intergenic
AAAAGGAGGAAGGGTGATCA+AGG 0.524536 5_4:+20168474 Msa0842790:CDS
TGTTGAAAGTTGATCCTGAT+CGG 0.525860 5_4:+20172105 Msa0842790:CDS
GAATTGAACCTCCCATGAAA+AGG 0.526968 5_4:+20168457 Msa0842790:CDS
TATGTTATCCCATCTGGTGC+AGG 0.528276 5_4:-20172791 None:intergenic
GTGCTGCAGATGGTTGTTGT+TGG 0.531203 5_4:+20172753 Msa0842790:CDS
GGCATAGAACCAAGTAATGT+AGG 0.532485 5_4:+20172971 Msa0842790:CDS
AGTGAGACTAGGGTTGATGC+TGG 0.534490 5_4:+20168372 Msa0842790:CDS
AGAGATTGGGAATGAGATTG+TGG 0.534715 5_4:+20168416 Msa0842790:CDS
GTGAATTGTTGACTTACTAG+TGG 0.542926 5_4:-20172225 None:intergenic
GGGAAAGTGAAACTAGAAGT+TGG 0.554485 5_4:+20172617 Msa0842790:CDS
GGAGGTTCAATTCTTTGCAA+AGG 0.554500 5_4:-20168447 None:intergenic
ACGTGCGACGTGGCTCGGAT+GGG 0.554509 5_4:+20173177 Msa0842790:CDS
GATCCAAATATGAGTTATGC+GGG 0.556800 5_4:+20172920 Msa0842790:CDS
GAAGAAGATTAGTGAGACTA+GGG 0.558907 5_4:+20168362 Msa0842790:CDS
TATCCTAATAGAGGTATCAA+AGG 0.564025 5_4:+20172569 Msa0842790:CDS
ACCTCCCATGAAAAGGAGGA+AGG 0.564040 5_4:+20168464 Msa0842790:CDS
TAAGTAATGTTGTATAAACA+TGG 0.567349 5_4:-20172307 None:intergenic
GTTCATATGGTCGTTTGATG+CGG 0.569679 5_4:-20167950 None:intergenic
TATCTGCTCATGAATTTGAA+GGG 0.578816 5_4:+20172597 Msa0842790:CDS
GTGAGACTAGGGTTGATGCT+GGG 0.580287 5_4:+20168373 Msa0842790:CDS
CCACATCTACTTGGATTGCA+AGG 0.580563 5_4:+20172873 Msa0842790:CDS
TGAAGAAGATTAGTGAGACT+AGG 0.583709 5_4:+20168361 Msa0842790:CDS
TATAGAAGAGAGCTCACAAG+TGG 0.587113 5_4:+20172004 Msa0842790:intron
ATGCATCTCCTGCACCAGAT+GGG 0.589805 5_4:+20172783 Msa0842790:CDS
ACTCACTAAGTATAATATCA+GGG 0.594109 5_4:-20172361 None:intergenic
CCTCCCATGAAAAGGAGGAA+GGG 0.594242 5_4:+20168465 Msa0842790:CDS
TCTGCGTACAGCGTTTCTGA+CGG 0.600558 5_4:+20168008 Msa0842790:CDS
CATCTCAAGAACATGACTAT+CGG 0.607263 5_4:-20172255 None:intergenic
CAAGTGGAGAACAATGGCTA+TGG 0.609468 5_4:+20172020 Msa0842790:CDS
CCTTGCAATCCAAGTAGATG+TGG 0.615060 5_4:-20172873 None:intergenic
GTTCGTGTACAAGAATGACC+TGG 0.619017 5_4:-20172833 None:intergenic
TTGAACCTCCCATGAAAAGG+AGG 0.626318 5_4:+20168460 Msa0842790:CDS
ACTGCTAGATGTGCTGCAGA+TGG 0.631118 5_4:+20172743 Msa0842790:CDS
GGGTATGAAACAAGAGCTGT+TGG 0.632928 5_4:+20172940 Msa0842790:CDS
AATAATGGACTCAATAATGG+AGG 0.634814 5_4:+20172173 Msa0842790:CDS
TGATCCAAATATGAGTTATG+CGG 0.636992 5_4:+20172919 Msa0842790:CDS
TACAACATTACTTAATCACG+AGG 0.647600 5_4:+20172316 Msa0842790:CDS
TTCGTGTACAAGAATGACCT+GGG 0.654913 5_4:-20172832 None:intergenic
ATAAACCCGAAACCGAACCT+GGG 0.657481 5_4:+20167926 Msa0842790:CDS
GGCTATGGTACACCTAACAT+GGG 0.658576 5_4:+20172035 Msa0842790:CDS
ATCAAACGACCATATGAACA+TGG 0.662932 5_4:+20167954 Msa0842790:CDS
TGAATTGTTGACTTACTAGT+GGG 0.663929 5_4:-20172224 None:intergenic
GAGATTAACATTGATGAGCA+TGG 0.664972 5_4:+20172482 Msa0842790:CDS
GATGATGAATGGAGAGTGAG+TGG 0.670910 5_4:+20172386 Msa0842790:CDS
AAGATTAAGTCATACAACCC+AGG 0.678278 5_4:+20172815 Msa0842790:CDS
AGCTCACAAGTGGAGAACAA+TGG 0.680339 5_4:+20172014 Msa0842790:CDS
GATTGGGAATGAGATTGTGG+AGG 0.716006 5_4:+20168419 Msa0842790:CDS
ACAACATTACTTAATCACGA+GGG 0.719512 5_4:+20172317 Msa0842790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATCCTATAATTTTT+TGG + chr5_4:20167773-20167792 Msa0842790:five_prime_UTR 10.0%
!! CAATGATTTAATTAATATTA+AGG + chr5_4:20169798-20169817 Msa0842790:intron 10.0%
!!! TACTTTTCTTTTTTTAATTA+CGG - chr5_4:20170367-20170386 None:intergenic 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG - chr5_4:20170610-20170629 None:intergenic 10.0%
!! AAAAAAAAAAGAATATCTTA+TGG + chr5_4:20171284-20171303 Msa0842790:intron 10.0%
!! ACAATTTAAGTGAAATTTAA+CGG + chr5_4:20168787-20168806 Msa0842790:intron 15.0%
!! AGAAAAATAATTTACTTCAT+GGG + chr5_4:20169081-20169100 Msa0842790:intron 15.0%
!!! TAAGTTATGATTTGTAATTA+AGG - chr5_4:20169405-20169424 None:intergenic 15.0%
!!! AGAGAAAACAATATATTTTT+TGG - chr5_4:20169610-20169629 None:intergenic 15.0%
!!! TATATAATAGTAGTTCTTTT+AGG + chr5_4:20170196-20170215 Msa0842790:intron 15.0%
!!! ATATAATAGTAGTTCTTTTA+GGG + chr5_4:20170197-20170216 Msa0842790:intron 15.0%
!!! ACTTTTCTTTTTTTAATTAC+GGG - chr5_4:20170366-20170385 None:intergenic 15.0%
!! GAAAAAAAAACTGAAATATA+AGG - chr5_4:20170432-20170451 None:intergenic 15.0%
!!! TCTTATAGTTTTATATACTT+TGG + chr5_4:20170658-20170677 Msa0842790:intron 15.0%
!!! TTTTGCAATTTATATCAAAA+TGG + chr5_4:20171727-20171746 Msa0842790:intron 15.0%
!! TTTGCAATTTATATCAAAAT+GGG + chr5_4:20171728-20171747 Msa0842790:intron 15.0%
!!! TTTTTTTGACAATAGTATTT+TGG + chr5_4:20173337-20173356 Msa0842790:three_prime_UTR 15.0%
!!! AAGTTAAGAAAACTAGTTTA+GGG + chr5_4:20168199-20168218 Msa0842790:CDS 20.0%
!! ATCATTAGGTATGAAAATTA+TGG + chr5_4:20168500-20168519 Msa0842790:intron 20.0%
!!! TATTTTGTAAGAGAGTAAAT+TGG + chr5_4:20168862-20168881 Msa0842790:intron 20.0%
!!! ATTTTGTAAGAGAGTAAATT+GGG + chr5_4:20168863-20168882 Msa0842790:intron 20.0%
!! TTGAATTCAATACAAATGAT+AGG + chr5_4:20168936-20168955 Msa0842790:intron 20.0%
!! GAGAAAAATAATTTACTTCA+TGG + chr5_4:20169080-20169099 Msa0842790:intron 20.0%
!! CAATTTGATATATGAATTCA+TGG - chr5_4:20169118-20169137 None:intergenic 20.0%
!!! ATTTTTTGGTAGAGTATAAA+AGG - chr5_4:20169596-20169615 None:intergenic 20.0%
!!! TTAATGCTTGTTCTTATTTA+AGG + chr5_4:20169762-20169781 Msa0842790:intron 20.0%
!! TTAAGGAATTACTATTTCAA+TGG + chr5_4:20169815-20169834 Msa0842790:intron 20.0%
!! TAAGGAATTACTATTTCAAT+GGG + chr5_4:20169816-20169835 Msa0842790:intron 20.0%
!! TGAAAATTCAATAACCAATT+CGG + chr5_4:20169842-20169861 Msa0842790:intron 20.0%
!! AATTCCAATCAATTTATGTA+AGG + chr5_4:20169881-20169900 Msa0842790:intron 20.0%
!! AAAAAACTGAAATATAAGGT+GGG - chr5_4:20170428-20170447 None:intergenic 20.0%
!! AAAAAAACTGAAATATAAGG+TGG - chr5_4:20170429-20170448 None:intergenic 20.0%
!! TGAAGAAATGTAATATTATG+AGG + chr5_4:20170558-20170577 Msa0842790:intron 20.0%
!! GAAGAAATGTAATATTATGA+GGG + chr5_4:20170559-20170578 Msa0842790:intron 20.0%
!! AAGAAATAAAAATGAGCATA+TGG - chr5_4:20170982-20171001 None:intergenic 20.0%
!!! TAAAAGTGTATATAAGCATA+TGG - chr5_4:20171043-20171062 None:intergenic 20.0%
!!! AATTAAGAATTTTAGAAGCA+TGG - chr5_4:20171152-20171171 None:intergenic 20.0%
!!! TACAAATAAATAAGAGCATA+TGG - chr5_4:20171203-20171222 None:intergenic 20.0%
!! ATACTCAAATCATAAACAAA+AGG - chr5_4:20171329-20171348 None:intergenic 20.0%
!! TAAGTAATGTTGTATAAACA+TGG - chr5_4:20172310-20172329 None:intergenic 20.0%
!! TTACATAGATGAAGAAAAAA+GGG + chr5_4:20172454-20172473 Msa0842790:CDS 20.0%
!!! ATAAATTGACACTTTAACTT+CGG - chr5_4:20172552-20172571 None:intergenic 20.0%
!!! TATTTTGGATACAAGTATTT+TGG + chr5_4:20173352-20173371 Msa0842790:three_prime_UTR 20.0%
!!! CTATAATTTTTTGGCACAAA+GGG + chr5_4:20167782-20167801 Msa0842790:five_prime_UTR 25.0%
! AGAAGAAGTGACAAAATTTA+GGG - chr5_4:20167815-20167834 None:intergenic 25.0%
! AAGAAGAAGTGACAAAATTT+AGG - chr5_4:20167816-20167835 None:intergenic 25.0%
!!! AATCGAAACTTTTGAAGAAA+GGG - chr5_4:20167886-20167905 None:intergenic 25.0%
!!! AAATCGAAACTTTTGAAGAA+AGG - chr5_4:20167887-20167906 None:intergenic 25.0%
! TTCAATTTGAGGAAAAATTG+AGG + chr5_4:20168112-20168131 Msa0842790:CDS 25.0%
!! GAAGTTAAGAAAACTAGTTT+AGG + chr5_4:20168198-20168217 Msa0842790:CDS 25.0%
! AGAAAAGAAGAACAATGATT+TGG + chr5_4:20168245-20168264 Msa0842790:CDS 25.0%
! CAATATTAGTTATCACCTAA+GGG - chr5_4:20168751-20168770 None:intergenic 25.0%
! ACAATATTAGTTATCACCTA+AGG - chr5_4:20168752-20168771 None:intergenic 25.0%
! TAATATTGTCAGCAACTAAT+GGG + chr5_4:20168763-20168782 Msa0842790:intron 25.0%
! ATTTAAGTGAAATTTAACGG+AGG + chr5_4:20168790-20168809 Msa0842790:intron 25.0%
! TTTAAGTGAAATTTAACGGA+GGG + chr5_4:20168791-20168810 Msa0842790:intron 25.0%
! AAAATTGTTAGGGACTAATT+TGG + chr5_4:20168833-20168852 Msa0842790:intron 25.0%
! AAATTGTTAGGGACTAATTT+GGG + chr5_4:20168834-20168853 Msa0842790:intron 25.0%
! AAATGATAGGATTAATGCTT+TGG + chr5_4:20168949-20168968 Msa0842790:intron 25.0%
! TTCTTAGTAGTTAACATTCA+TGG - chr5_4:20169048-20169067 None:intergenic 25.0%
! TTATGTCCTATTGAAATCAA+TGG + chr5_4:20169210-20169229 Msa0842790:intron 25.0%
! AACATAAACTCATTTAGCAT+TGG + chr5_4:20169330-20169349 Msa0842790:intron 25.0%
! ACATAAACTCATTTAGCATT+GGG + chr5_4:20169331-20169350 Msa0842790:intron 25.0%
! TCAACCTTACATAAATTGAT+TGG - chr5_4:20169888-20169907 None:intergenic 25.0%
! AATCATGATTAAGATGTCAA+GGG + chr5_4:20170000-20170019 Msa0842790:intron 25.0%
!! AAACACACTCTAAATGATTT+TGG - chr5_4:20170460-20170479 None:intergenic 25.0%
!! AAAATCATTTAGAGTGTGTT+TGG + chr5_4:20170459-20170478 Msa0842790:intron 25.0%
!! TAAAACTATAAGAGTGTGTT+TGG - chr5_4:20170651-20170670 None:intergenic 25.0%
! ACAATGCTAATCTAATCAAT+AGG - chr5_4:20170744-20170763 None:intergenic 25.0%
!!! TTTTTAGGATTACAAGGATT+TGG + chr5_4:20170888-20170907 Msa0842790:intron 25.0%
! AGGAAATGTTAGATTTGAAA+TGG + chr5_4:20171365-20171384 Msa0842790:intron 25.0%
! ATATATCCAAGCATCTTATA+TGG + chr5_4:20171556-20171575 Msa0842790:intron 25.0%
!!! TCTTGTTAGATTTGTTATTC+AGG - chr5_4:20171787-20171806 None:intergenic 25.0%
! TGAATAACAAATCTAACAAG+AGG + chr5_4:20171786-20171805 Msa0842790:intron 25.0%
!! ACAGTCTCTTTTATTCTATT+AGG + chr5_4:20171939-20171958 Msa0842790:intron 25.0%
!!! ATCAATAATGGACTCAATAA+TGG + chr5_4:20172170-20172189 Msa0842790:CDS 25.0%
! ACTCACTAAGTATAATATCA+GGG - chr5_4:20172364-20172383 None:intergenic 25.0%
! AACTCACTAAGTATAATATC+AGG - chr5_4:20172365-20172384 None:intergenic 25.0%
!! ATTTCATCACTTTCATTTTG+AGG - chr5_4:20172419-20172438 None:intergenic 25.0%
! GTTACATAGATGAAGAAAAA+AGG + chr5_4:20172453-20172472 Msa0842790:CDS 25.0%
!!! TAGAGATTTTGTTATACAAG+AGG + chr5_4:20172679-20172698 Msa0842790:CDS 25.0%
!!! AGAGATTTTGTTATACAAGA+GGG + chr5_4:20172680-20172699 Msa0842790:CDS 25.0%
!! CAATGTTTAGTGGTTTATTT+TGG + chr5_4:20173257-20173276 Msa0842790:three_prime_UTR 25.0%
CCTTTGTGCCAAAAAATTAT+AGG - chr5_4:20167784-20167803 None:intergenic 30.0%
!!! CCTATAATTTTTTGGCACAA+AGG + chr5_4:20167781-20167800 Msa0842790:five_prime_UTR 30.0%
!! ATCGAAACTTTTGAAGAAAG+GGG - chr5_4:20167885-20167904 None:intergenic 30.0%
! TCATGTTTTCCATGTTCATA+TGG - chr5_4:20167966-20167985 None:intergenic 30.0%
AAACATGATCATTCAGGATT+TGG + chr5_4:20167978-20167997 Msa0842790:CDS 30.0%
TCAACAGAAGTTTCAATTTG+AGG + chr5_4:20168101-20168120 Msa0842790:CDS 30.0%
! AGAAAACTAGTTTAGGGTTT+AGG + chr5_4:20168205-20168224 Msa0842790:CDS 30.0%
! GAAAACTAGTTTAGGGTTTA+GGG + chr5_4:20168206-20168225 Msa0842790:CDS 30.0%
!!! TAGAAAAAGAGTTGGTGTTT+TGG + chr5_4:20168287-20168306 Msa0842790:CDS 30.0%
AGAACGAGAAAAATGCATTT+GGG + chr5_4:20168310-20168329 Msa0842790:CDS 30.0%
CTGTTGAAGAAAAAGAGATT+GGG + chr5_4:20168403-20168422 Msa0842790:CDS 30.0%
ACAATTGTCAGAGACTAATT+TGG - chr5_4:20168663-20168682 None:intergenic 30.0%
CTAATATTGTCAGCAACTAA+TGG + chr5_4:20168762-20168781 Msa0842790:intron 30.0%
TTCCCTGTGTAAAATTGTTA+GGG + chr5_4:20168823-20168842 Msa0842790:intron 30.0%
!! ATTGGACCATTGATTTCAAT+AGG - chr5_4:20169219-20169238 None:intergenic 30.0%
ATTAAAAGCTCTCTTGCATA+AGG - chr5_4:20169371-20169390 None:intergenic 30.0%
! TTCCTTAATGATAAGTGTTG+GGG - chr5_4:20169529-20169548 None:intergenic 30.0%
GTTCCTTAATGATAAGTGTT+GGG - chr5_4:20169530-20169549 None:intergenic 30.0%
!! ACTTTTTGGTAACACAAAGA+TGG - chr5_4:20169552-20169571 None:intergenic 30.0%
!! ACACAAAGATGCTTACTTTT+TGG - chr5_4:20169566-20169585 None:intergenic 30.0%
ATTGATGCTCTATACTCATT+TGG + chr5_4:20169728-20169747 Msa0842790:intron 30.0%
ATCATGATTCATGACACAAT+TGG - chr5_4:20169989-20170008 None:intergenic 30.0%
GAATCATGATTAAGATGTCA+AGG + chr5_4:20169999-20170018 Msa0842790:intron 30.0%
GAATGGGAACAGTTATTTAA+AGG + chr5_4:20170072-20170091 Msa0842790:intron 30.0%
!! TCTTTTTAAGCAGTAAGCTT+AGG + chr5_4:20170129-20170148 Msa0842790:intron 30.0%
!! CTTTTTAAGCAGTAAGCTTA+GGG + chr5_4:20170130-20170149 Msa0842790:intron 30.0%
! GGAAGAAATATGTCATGTTT+TGG + chr5_4:20170151-20170170 Msa0842790:intron 30.0%
! TTTGGATTTAGAGTTTAGGA+GGG - chr5_4:20170405-20170424 None:intergenic 30.0%
!! ACTCTAAATGATTTTGGAAG+AGG - chr5_4:20170454-20170473 None:intergenic 30.0%
TGAGGGAATGTAATACTTTA+AGG + chr5_4:20170496-20170515 Msa0842790:intron 30.0%
TTAAGGTGAATTCCATTGTT+TGG + chr5_4:20170513-20170532 Msa0842790:intron 30.0%
TGTGTTTGGATGAAGTAATT+TGG - chr5_4:20170637-20170656 None:intergenic 30.0%
TGTTCTATTGTGTTCTTTGT+AGG - chr5_4:20170690-20170709 None:intergenic 30.0%
! TGTTTTATACTCCTCATTGT+TGG + chr5_4:20170716-20170735 Msa0842790:intron 30.0%
!!! TTTCTTGTTCCTGTTGTTTT+CGG + chr5_4:20170861-20170880 Msa0842790:intron 30.0%
AAAAAAACACCGAAAACAAC+AGG - chr5_4:20170873-20170892 None:intergenic 30.0%
!!! GTTGTTTTCGGTGTTTTTTT+AGG + chr5_4:20170873-20170892 Msa0842790:intron 30.0%
!!! GGTGTTTTTTTAGGATTACA+AGG + chr5_4:20170882-20170901 Msa0842790:intron 30.0%
! ATGTCTTTGTTTGTTTGATG+TGG + chr5_4:20171064-20171083 Msa0842790:intron 30.0%
! TGTCTTTGTTTGTTTGATGT+GGG + chr5_4:20171065-20171084 Msa0842790:intron 30.0%
ACATACATGGTTAGTACAAA+AGG - chr5_4:20171179-20171198 None:intergenic 30.0%
TCTCTTACATGAGTATCTTA+TGG + chr5_4:20171252-20171271 Msa0842790:intron 30.0%
! GTATTTGTCACTGTATTGAT+AGG + chr5_4:20171345-20171364 Msa0842790:intron 30.0%
GTAGGGAAAAATAATCTCTT+GGG + chr5_4:20171422-20171441 Msa0842790:intron 30.0%
TAGGGAAAAATAATCTCTTG+GGG + chr5_4:20171423-20171442 Msa0842790:intron 30.0%
!!! GGTTTCTAAGGTATTTTACA+TGG + chr5_4:20171475-20171494 Msa0842790:intron 30.0%
AAAAGCTGTCAAAAATGACA+AGG - chr5_4:20171868-20171887 None:intergenic 30.0%
!! AATAATGGACTCAATAATGG+AGG + chr5_4:20172173-20172192 Msa0842790:CDS 30.0%
!! TGAATTGTTGACTTACTAGT+GGG - chr5_4:20172227-20172246 None:intergenic 30.0%
TACAACATTACTTAATCACG+AGG + chr5_4:20172316-20172335 Msa0842790:CDS 30.0%
ACAACATTACTTAATCACGA+GGG + chr5_4:20172317-20172336 Msa0842790:CDS 30.0%
!! TTAGTGAGTTTGATGATGAA+TGG + chr5_4:20172375-20172394 Msa0842790:CDS 30.0%
GTGTCAATTTATCCTAATAG+AGG + chr5_4:20172560-20172579 Msa0842790:CDS 30.0%
!! TATCCTAATAGAGGTATCAA+AGG + chr5_4:20172569-20172588 Msa0842790:CDS 30.0%
TTTCCTTTGATACCTCTATT+AGG - chr5_4:20172575-20172594 None:intergenic 30.0%
ATATCTGCTCATGAATTTGA+AGG + chr5_4:20172596-20172615 Msa0842790:CDS 30.0%
TATCTGCTCATGAATTTGAA+GGG + chr5_4:20172597-20172616 Msa0842790:CDS 30.0%
!! GAGATTTTGTTATACAAGAG+GGG + chr5_4:20172681-20172700 Msa0842790:CDS 30.0%
ATCTTATATGTTATCCCATC+TGG - chr5_4:20172800-20172819 None:intergenic 30.0%
GAAGTTAGAAAGCAAGTTAA+AGG + chr5_4:20172895-20172914 Msa0842790:CDS 30.0%
TGATCCAAATATGAGTTATG+CGG + chr5_4:20172919-20172938 Msa0842790:CDS 30.0%
TAAAGTTGACCTACATTACT+TGG - chr5_4:20172983-20173002 None:intergenic 30.0%
ACTTTATCGTGCAAGAAAAA+AGG + chr5_4:20172997-20173016 Msa0842790:CDS 30.0%
!!! GTATCTTAGTTTTATCTCTC+TGG - chr5_4:20173070-20173089 None:intergenic 30.0%
GAGAGATAAAACTAAGATAC+AGG + chr5_4:20173070-20173089 Msa0842790:intron 30.0%
!!! TGTTTAGTGGTTTATTTTGG+AGG + chr5_4:20173260-20173279 Msa0842790:three_prime_UTR 30.0%
!! TCGAAACTTTTGAAGAAAGG+GGG - chr5_4:20167884-20167903 None:intergenic 35.0%
! TCGATTTTTCGTGATTCTCA+TGG + chr5_4:20167900-20167919 Msa0842790:exon 35.0%
ATCAAACGACCATATGAACA+TGG + chr5_4:20167954-20167973 Msa0842790:CDS 35.0%
CATGGAAAACATGATCATTC+AGG + chr5_4:20167972-20167991 Msa0842790:CDS 35.0%
!! GAAGATGTTGATTCTCTGTT+TGG - chr5_4:20168083-20168102 None:intergenic 35.0%
! GAAGAACAATGATTTGGAGT+TGG + chr5_4:20168251-20168270 Msa0842790:CDS 35.0%
TCTGAGCTTAGAAAAAGAGT+TGG + chr5_4:20168279-20168298 Msa0842790:CDS 35.0%
GAGAACGAGAAAAATGCATT+TGG + chr5_4:20168309-20168328 Msa0842790:CDS 35.0%
GAACGAGAAAAATGCATTTG+GGG + chr5_4:20168311-20168330 Msa0842790:CDS 35.0%
TGAAGAAGATTAGTGAGACT+AGG + chr5_4:20168361-20168380 Msa0842790:CDS 35.0%
GAAGAAGATTAGTGAGACTA+GGG + chr5_4:20168362-20168381 Msa0842790:CDS 35.0%
GCTGTTGAAGAAAAAGAGAT+TGG + chr5_4:20168402-20168421 Msa0842790:CDS 35.0%
GAATCGCGTTCAAATTGTTA+GGG - chr5_4:20168601-20168620 None:intergenic 35.0%
TGAATCGCGTTCAAATTGTT+AGG - chr5_4:20168602-20168621 None:intergenic 35.0%
!! ACGCGATTCAATTTTGTTTC+TGG + chr5_4:20168612-20168631 Msa0842790:intron 35.0%
ATTGTAGCACATTATTCCCA+CGG + chr5_4:20168678-20168697 Msa0842790:intron 35.0%
! ATGATTTAAAACACGCCCTT+AGG + chr5_4:20168733-20168752 Msa0842790:intron 35.0%
GTTCCCTGTGTAAAATTGTT+AGG + chr5_4:20168822-20168841 Msa0842790:intron 35.0%
! GTCCCTAACAATTTTACACA+GGG - chr5_4:20168828-20168847 None:intergenic 35.0%
! AGTCCCTAACAATTTTACAC+AGG - chr5_4:20168829-20168848 None:intergenic 35.0%
AGATTGTCAGGGGTTAATTT+GGG + chr5_4:20168891-20168910 Msa0842790:intron 35.0%
TTTCCTGCTGTATAAAGACA+AGG + chr5_4:20169006-20169025 Msa0842790:intron 35.0%
CTGTATAAAGACAAGGTGTA+GGG + chr5_4:20169013-20169032 Msa0842790:intron 35.0%
! AATGGTCCAATTTGTTCAAC+TGG + chr5_4:20169228-20169247 Msa0842790:intron 35.0%
TCTAATTCGATGATGAGTGA+TGG - chr5_4:20169286-20169305 None:intergenic 35.0%
! CATTTAGCATTGGGTTGTTA+TGG + chr5_4:20169340-20169359 Msa0842790:intron 35.0%
!! TAATGATAAGTGTTGGGGAT+GGG - chr5_4:20169524-20169543 None:intergenic 35.0%
!! TTAATGATAAGTGTTGGGGA+TGG - chr5_4:20169525-20169544 None:intergenic 35.0%
ATCCCCAACACTTATCATTA+AGG + chr5_4:20169524-20169543 Msa0842790:intron 35.0%
GGTTCCTTAATGATAAGTGT+TGG - chr5_4:20169531-20169550 None:intergenic 35.0%
AACAGGACAACAACATTGAT+TGG - chr5_4:20169648-20169667 None:intergenic 35.0%
AATCAACACACGAATGAAAC+AGG - chr5_4:20169665-20169684 None:intergenic 35.0%
! TTTCTAGACTAGAGAAGCAT+GGG - chr5_4:20169703-20169722 None:intergenic 35.0%
! ATTTCTAGACTAGAGAAGCA+TGG - chr5_4:20169704-20169723 None:intergenic 35.0%
CATGATTTCATCTTCCGAAT+TGG - chr5_4:20169859-20169878 None:intergenic 35.0%
!! TATGAAAACTCCTCTAGGAT+AGG - chr5_4:20169925-20169944 None:intergenic 35.0%
TTGAGTATGAAAACTCCTCT+AGG - chr5_4:20169930-20169949 None:intergenic 35.0%
ATGATTAAGATGTCAAGGGT+TGG + chr5_4:20170004-20170023 Msa0842790:intron 35.0%
AAAGGTTAATGAGAGAAGAG+AGG + chr5_4:20170090-20170109 Msa0842790:intron 35.0%
AAGGTTAATGAGAGAAGAGA+GGG + chr5_4:20170091-20170110 Msa0842790:intron 35.0%
!!! CATGTTTTGGAGCTTTTATG+AGG + chr5_4:20170164-20170183 Msa0842790:intron 35.0%
!!! GTAGTTCTTTTAGGGTGTTT+TGG + chr5_4:20170205-20170224 Msa0842790:intron 35.0%
!!! TTCTTTTAGGGTGTTTTGGA+TGG + chr5_4:20170209-20170228 Msa0842790:intron 35.0%
! TTGGATTTAGAGTTTAGGAG+GGG - chr5_4:20170404-20170423 None:intergenic 35.0%
! GTTTGGATTTAGAGTTTAGG+AGG - chr5_4:20170406-20170425 None:intergenic 35.0%
! TGGGTTTGGATTTAGAGTTT+AGG - chr5_4:20170409-20170428 None:intergenic 35.0%
! ACTGAAATATAAGGTGGGTT+TGG - chr5_4:20170423-20170442 None:intergenic 35.0%
! TCATTTAGAGTGTGTTTGGA+TGG + chr5_4:20170463-20170482 Msa0842790:intron 35.0%
! CATTTAGAGTGTGTTTGGAT+GGG + chr5_4:20170464-20170483 Msa0842790:intron 35.0%
! ATTTAGAGTGTGTTTGGATG+GGG + chr5_4:20170465-20170484 Msa0842790:intron 35.0%
GTGAATTCCATTGTTTGGAT+GGG + chr5_4:20170518-20170537 Msa0842790:intron 35.0%
TGAATTCCATTGTTTGGATG+GGG + chr5_4:20170519-20170538 Msa0842790:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr5_4:20170577-20170596 Msa0842790:intron 35.0%
ATCAATAGGAACCAACAATG+AGG - chr5_4:20170730-20170749 None:intergenic 35.0%
ACTGAGCTCATGTTATCTTT+AGG + chr5_4:20171115-20171134 Msa0842790:intron 35.0%
! AAGAGCATATGGTACATACA+TGG - chr5_4:20171192-20171211 None:intergenic 35.0%
GGTAGGGAAAAATAATCTCT+TGG + chr5_4:20171421-20171440 Msa0842790:intron 35.0%
TCTTGGGGAAAAAAAAATCC+AGG + chr5_4:20171438-20171457 Msa0842790:intron 35.0%
CTTGGGGAAAAAAAAATCCA+GGG + chr5_4:20171439-20171458 Msa0842790:intron 35.0%
!!! GGTATTTTACATGGTGCTAT+TGG + chr5_4:20171484-20171503 Msa0842790:intron 35.0%
AGGTTATTCTAGCAATCTGT+TGG - chr5_4:20171767-20171786 None:intergenic 35.0%
AAATCTAACAAGAGGTAGAG+AGG + chr5_4:20171794-20171813 Msa0842790:intron 35.0%
AGAGACTGTTAACAATGACA+GGG - chr5_4:20171928-20171947 None:intergenic 35.0%
AAGAGACTGTTAACAATGAC+AGG - chr5_4:20171929-20171948 None:intergenic 35.0%
AAATGTACACATCCCATGTT+AGG - chr5_4:20172050-20172069 None:intergenic 35.0%
!! CATTTGTTGGTGCATTTTGA+TGG + chr5_4:20172065-20172084 Msa0842790:CDS 35.0%
! TGTTGAAAGTTGATCCTGAT+CGG + chr5_4:20172105-20172124 Msa0842790:CDS 35.0%
GTCATCAACCAAATCCAAAT+AGG - chr5_4:20172135-20172154 None:intergenic 35.0%
!! AGTGGATTGGCTATCAATAA+TGG + chr5_4:20172158-20172177 Msa0842790:CDS 35.0%
!! GTGAATTGTTGACTTACTAG+TGG - chr5_4:20172228-20172247 None:intergenic 35.0%
CATCTCAAGAACATGACTAT+CGG - chr5_4:20172258-20172277 None:intergenic 35.0%
!! TCATCACTTTCATTTTGAGG+AGG - chr5_4:20172416-20172435 None:intergenic 35.0%
GAAAGTGATGAAATTCTCTC+AGG + chr5_4:20172425-20172444 Msa0842790:CDS 35.0%
GAGATTAACATTGATGAGCA+TGG + chr5_4:20172482-20172501 Msa0842790:CDS 35.0%
! CTAGAAGTTGGTCTATTGTT+TGG + chr5_4:20172629-20172648 Msa0842790:CDS 35.0%
AAGATTAAGTCATACAACCC+AGG + chr5_4:20172815-20172834 Msa0842790:CDS 35.0%
GATCCAAATATGAGTTATGC+GGG + chr5_4:20172920-20172939 Msa0842790:CDS 35.0%
ATACCCGCATAACTCATATT+TGG - chr5_4:20172926-20172945 None:intergenic 35.0%
CTGATGGAAACAATGTTTAG+TGG + chr5_4:20173247-20173266 Msa0842790:three_prime_UTR 35.0%
!!! TGGTTTATTTTGGAGGATTC+TGG + chr5_4:20173267-20173286 Msa0842790:three_prime_UTR 35.0%
GTTTAGTGGAGATGGAGAAT+GGG - chr5_4:20167862-20167881 None:intergenic 40.0%
TTTGAAGAAAGGGGGTTTAG+TGG - chr5_4:20167876-20167895 None:intergenic 40.0%
GTTCATATGGTCGTTTGATG+CGG - chr5_4:20167953-20167972 None:intergenic 40.0%
AGAGATGAAATGTGTGAGAG+AGG + chr5_4:20168138-20168157 Msa0842790:CDS 40.0%
GAGATGAAATGTGTGAGAGA+GGG + chr5_4:20168139-20168158 Msa0842790:CDS 40.0%
TGGGGTGAAAATTAGTGAGT+TGG + chr5_4:20168329-20168348 Msa0842790:CDS 40.0%
! GGTGAAAATTAGTGAGTTGG+AGG + chr5_4:20168332-20168351 Msa0842790:CDS 40.0%
AGAGATTGGGAATGAGATTG+TGG + chr5_4:20168416-20168435 Msa0842790:CDS 40.0%
GGAGGTTCAATTCTTTGCAA+AGG - chr5_4:20168450-20168469 None:intergenic 40.0%
GAATTGAACCTCCCATGAAA+AGG + chr5_4:20168457-20168476 Msa0842790:CDS 40.0%
AATCATACATGTCGCAGAGA+AGG - chr5_4:20168719-20168738 None:intergenic 40.0%
CAGATTGTCAGGGGTTAATT+TGG + chr5_4:20168890-20168909 Msa0842790:intron 40.0%
CAGCAGGAAAATCACATTCT+CGG - chr5_4:20168996-20169015 None:intergenic 40.0%
ACACCTTGTCTTTATACAGC+AGG - chr5_4:20169012-20169031 None:intergenic 40.0%
GCTGTATAAAGACAAGGTGT+AGG + chr5_4:20169012-20169031 Msa0842790:intron 40.0%
CAAGCACCAGTTGAACAAAT+TGG - chr5_4:20169237-20169256 None:intergenic 40.0%
AAAGCTCTCTTGCATAAGGA+AGG - chr5_4:20169367-20169386 None:intergenic 40.0%
AATGACCATTCCTATCCTAG+AGG + chr5_4:20169912-20169931 Msa0842790:intron 40.0%
!! AAACTCCTCTAGGATAGGAA+TGG - chr5_4:20169920-20169939 None:intergenic 40.0%
GGTCTACAATCTGTTCTCTA+GGG - chr5_4:20169968-20169987 None:intergenic 40.0%
TGGTCTACAATCTGTTCTCT+AGG - chr5_4:20169969-20169988 None:intergenic 40.0%
TTAAGATGTCAAGGGTTGGA+AGG + chr5_4:20170008-20170027 Msa0842790:intron 40.0%
!!! TTTTAGGGTGTTTTGGATGG+AGG + chr5_4:20170212-20170231 Msa0842790:intron 40.0%
!! TTTAGGGTGTTTTGGATGGA+GGG + chr5_4:20170213-20170232 Msa0842790:intron 40.0%
! TTTAGAGTGTGTTTGGATGG+GGG + chr5_4:20170466-20170485 Msa0842790:intron 40.0%
GGTGAATTCCATTGTTTGGA+TGG + chr5_4:20170517-20170536 Msa0842790:intron 40.0%
GAATTCCATTGTTTGGATGG+GGG + chr5_4:20170520-20170539 Msa0842790:intron 40.0%
TACTCATGTAAGAGACAGCT+TGG - chr5_4:20171247-20171266 None:intergenic 40.0%
GGCATATCTGATGGTTTCTA+AGG + chr5_4:20171463-20171482 Msa0842790:intron 40.0%
! ATATATGATGACGACGACGA+TGG - chr5_4:20171542-20171561 None:intergenic 40.0%
! TCAAGCTTCAAGTTTGCGAA+AGG + chr5_4:20171835-20171854 Msa0842790:intron 40.0%
TATAGAAGAGAGCTCACAAG+TGG + chr5_4:20172004-20172023 Msa0842790:intron 40.0%
CATGGGATGTGTACATTTGT+TGG + chr5_4:20172052-20172071 Msa0842790:CDS 40.0%
TCGGTACTCCTATTTGGATT+TGG + chr5_4:20172124-20172143 Msa0842790:CDS 40.0%
!! GATTTGGTTGATGACGTTAG+TGG + chr5_4:20172140-20172159 Msa0842790:CDS 40.0%
AGTGGGATGACAGAAAGAAA+TGG - chr5_4:20172210-20172229 None:intergenic 40.0%
! AACTTCGGCAGAATTTTCAG+AGG - chr5_4:20172537-20172556 None:intergenic 40.0%
GGGAAAGTGAAACTAGAAGT+TGG + chr5_4:20172617-20172636 Msa0842790:CDS 40.0%
! AAGAGGGGTTTGAGATTAAG+AGG + chr5_4:20172696-20172715 Msa0842790:CDS 40.0%
TTCGTGTACAAGAATGACCT+GGG - chr5_4:20172835-20172854 None:intergenic 40.0%
ACTCAAATGCCACATCTACT+TGG + chr5_4:20172864-20172883 Msa0842790:CDS 40.0%
CAAGAGCTGTTGGATAACTA+TGG + chr5_4:20172950-20172969 Msa0842790:CDS 40.0%
GGCATAGAACCAAGTAATGT+AGG + chr5_4:20172971-20172990 Msa0842790:CDS 40.0%
GTATATAGCGATTGCTCTGA+TGG + chr5_4:20173231-20173250 Msa0842790:exon 40.0%
GGTTTAGTGGAGATGGAGAA+TGG - chr5_4:20167863-20167882 None:intergenic 45.0%
AATAAACCCGAAACCGAACC+TGG + chr5_4:20167925-20167944 Msa0842790:CDS 45.0%
ATAAACCCGAAACCGAACCT+GGG + chr5_4:20167926-20167945 Msa0842790:CDS 45.0%
GATTGGGAATGAGATTGTGG+AGG + chr5_4:20168419-20168438 Msa0842790:CDS 45.0%
TTGAACCTCCCATGAAAAGG+AGG + chr5_4:20168460-20168479 Msa0842790:CDS 45.0%
! TCACCCTTCCTCCTTTTCAT+GGG - chr5_4:20168471-20168490 None:intergenic 45.0%
! ATCACCCTTCCTCCTTTTCA+TGG - chr5_4:20168472-20168491 None:intergenic 45.0%
AAAAGGAGGAAGGGTGATCA+AGG + chr5_4:20168474-20168493 Msa0842790:CDS 45.0%
GGTGATCAAGGTGCATCATT+AGG + chr5_4:20168486-20168505 Msa0842790:CDS 45.0%
AATTGGGAGCTCAGATTGTC+AGG + chr5_4:20168879-20168898 Msa0842790:intron 45.0%
ATTGGGAGCTCAGATTGTCA+GGG + chr5_4:20168880-20168899 Msa0842790:intron 45.0%
TTCTCAACTTCTCTCTGCTG+TGG + chr5_4:20169173-20169192 Msa0842790:intron 45.0%
TCTCAACTTCTCTCTGCTGT+GGG + chr5_4:20169174-20169193 Msa0842790:intron 45.0%
! GTTGGAAGGTACACACAAGA+AGG + chr5_4:20170022-20170041 Msa0842790:intron 45.0%
CACAAGAAGGCTCGAGAAAA+TGG + chr5_4:20170035-20170054 Msa0842790:intron 45.0%
AGGCTCGAGAAAATGGTTGA+AGG + chr5_4:20170042-20170061 Msa0842790:intron 45.0%
! TGGTTGAAGGTGCACTTGAA+TGG + chr5_4:20170055-20170074 Msa0842790:intron 45.0%
! GGTTGAAGGTGCACTTGAAT+GGG + chr5_4:20170056-20170075 Msa0842790:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr5_4:20170478-20170497 Msa0842790:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + chr5_4:20170479-20170498 Msa0842790:intron 45.0%
ACATTCCCCCATCCAAACAA+TGG - chr5_4:20170528-20170547 None:intergenic 45.0%
GCTCAGTTGTGATTCTATGC+AGG - chr5_4:20171102-20171121 None:intergenic 45.0%
AGCTCCACCCTCAATGATAA+AGG + chr5_4:20171398-20171417 Msa0842790:intron 45.0%
GCTCCACCCTCAATGATAAA+GGG + chr5_4:20171399-20171418 Msa0842790:intron 45.0%
CTCCACCCTCAATGATAAAG+GGG + chr5_4:20171400-20171419 Msa0842790:intron 45.0%
TACCCCTTTATCATTGAGGG+TGG - chr5_4:20171405-20171424 None:intergenic 45.0%
ACCCTCAATGATAAAGGGGT+AGG + chr5_4:20171404-20171423 Msa0842790:intron 45.0%
CCCTACCCCTTTATCATTGA+GGG - chr5_4:20171408-20171427 None:intergenic 45.0%
CCCTCAATGATAAAGGGGTA+GGG + chr5_4:20171405-20171424 Msa0842790:intron 45.0%
TCCCTACCCCTTTATCATTG+AGG - chr5_4:20171409-20171428 None:intergenic 45.0%
GGGGAAAAAAAAATCCAGGG+AGG + chr5_4:20171442-20171461 Msa0842790:intron 45.0%
CAGACGCCATATAAGATGCT+TGG - chr5_4:20171565-20171584 None:intergenic 45.0%
AGCTCACAAGTGGAGAACAA+TGG + chr5_4:20172014-20172033 Msa0842790:CDS 45.0%
CAAGTGGAGAACAATGGCTA+TGG + chr5_4:20172020-20172039 Msa0842790:CDS 45.0%
TGGCTATGGTACACCTAACA+TGG + chr5_4:20172034-20172053 Msa0842790:CDS 45.0%
GGCTATGGTACACCTAACAT+GGG + chr5_4:20172035-20172054 Msa0842790:CDS 45.0%
TCCTGATCGGTACTCCTATT+TGG + chr5_4:20172118-20172137 Msa0842790:CDS 45.0%
!! TCCAAATAGGAGTACCGATC+AGG - chr5_4:20172122-20172141 None:intergenic 45.0%
!! GGTTGATGACGTTAGTGGAT+TGG + chr5_4:20172145-20172164 Msa0842790:CDS 45.0%
GATGATGAATGGAGAGTGAG+TGG + chr5_4:20172386-20172405 Msa0842790:CDS 45.0%
TATGTTATCCCATCTGGTGC+AGG - chr5_4:20172794-20172813 None:intergenic 45.0%
GTTCGTGTACAAGAATGACC+TGG - chr5_4:20172836-20172855 None:intergenic 45.0%
CCTTGCAATCCAAGTAGATG+TGG - chr5_4:20172876-20172895 None:intergenic 45.0%
CCACATCTACTTGGATTGCA+AGG + chr5_4:20172873-20172892 Msa0842790:CDS 45.0%
GGGTATGAAACAAGAGCTGT+TGG + chr5_4:20172940-20172959 Msa0842790:CDS 45.0%
AAAAAGCTAAACGTGCGACG+TGG + chr5_4:20173167-20173186 Msa0842790:CDS 45.0%
GAAAGGGGGTTTAGTGGAGA+TGG - chr5_4:20167870-20167889 None:intergenic 50.0%
TCTGCGTACAGCGTTTCTGA+CGG + chr5_4:20168008-20168027 Msa0842790:CDS 50.0%
!! AGTGAGACTAGGGTTGATGC+TGG + chr5_4:20168372-20168391 Msa0842790:CDS 50.0%
!! GTGAGACTAGGGTTGATGCT+GGG + chr5_4:20168373-20168392 Msa0842790:CDS 50.0%
ACCTCCCATGAAAAGGAGGA+AGG + chr5_4:20168464-20168483 Msa0842790:CDS 50.0%
CCTCCCATGAAAAGGAGGAA+GGG + chr5_4:20168465-20168484 Msa0842790:CDS 50.0%
TTGGGAGCTCAGATTGTCAG+GGG + chr5_4:20168881-20168900 Msa0842790:intron 50.0%
TTTAGGAGGGGCAAAGAGGA+GGG - chr5_4:20170392-20170411 None:intergenic 50.0%
AGAGTTTAGGAGGGGCAAAG+AGG - chr5_4:20170396-20170415 None:intergenic 50.0%
! ATCCAGGGAGGCATATCTGA+TGG + chr5_4:20171454-20171473 Msa0842790:intron 50.0%
AACCATCAGATATGCCTCCC+TGG - chr5_4:20171459-20171478 None:intergenic 50.0%
ACTGCTAGATGTGCTGCAGA+TGG + chr5_4:20172743-20172762 Msa0842790:CDS 50.0%
GTGCTGCAGATGGTTGTTGT+TGG + chr5_4:20172753-20172772 Msa0842790:CDS 50.0%
ATGCATCTCCTGCACCAGAT+GGG + chr5_4:20172783-20172802 Msa0842790:CDS 50.0%
GTTTGATGCGGACCCAGGTT+CGG - chr5_4:20167941-20167960 None:intergenic 55.0%
! CCCTTCCTCCTTTTCATGGG+AGG - chr5_4:20168468-20168487 None:intergenic 55.0%
CATTATTCCCACGGATCCCC+TGG + chr5_4:20168687-20168706 Msa0842790:intron 55.0%
GTTTAGGAGGGGCAAAGAGG+AGG - chr5_4:20170393-20170412 None:intergenic 55.0%
CATGCATCTCCTGCACCAGA+TGG + chr5_4:20172782-20172801 Msa0842790:CDS 55.0%
! TGCGGACCCAGGTTCGGTTT+CGG - chr5_4:20167935-20167954 None:intergenic 60.0%
TGGTCGTTTGATGCGGACCC+AGG - chr5_4:20167946-20167965 None:intergenic 60.0%
GCAGAGAAGGCAGCAACCAG+GGG - chr5_4:20168706-20168725 None:intergenic 60.0%
CGCAGAGAAGGCAGCAACCA+GGG - chr5_4:20168707-20168726 None:intergenic 60.0%
TCGCAGAGAAGGCAGCAACC+AGG - chr5_4:20168708-20168727 None:intergenic 60.0%
GCTAAACGTGCGACGTGGCT+CGG + chr5_4:20173172-20173191 Msa0842790:CDS 60.0%
! GCGGACCCAGGTTCGGTTTC+GGG - chr5_4:20167934-20167953 None:intergenic 65.0%
GCAGCAACCAGGGGATCCGT+GGG - chr5_4:20168697-20168716 None:intergenic 65.0%
! AACGTGCGACGTGGCTCGGA+TGG + chr5_4:20173176-20173195 Msa0842790:CDS 65.0%
! ACGTGCGACGTGGCTCGGAT+GGG + chr5_4:20173177-20173196 Msa0842790:CDS 65.0%
GGCAGCAACCAGGGGATCCG+TGG - chr5_4:20168698-20168717 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20167722 20173400 20167722 ID=Msa0842790;Name=Msa0842790
chr5_4 mRNA 20167722 20173400 20167722 ID=Msa0842790-mRNA-1;Parent=Msa0842790;Name=Msa0842790-mRNA-1;_AED=0.26;_eAED=0.26;_QI=197|0.5|0.66|1|1|1|3|162|556
chr5_4 exon 20167722 20168507 20167722 ID=Msa0842790-mRNA-1:exon:8321;Parent=Msa0842790-mRNA-1
chr5_4 exon 20172009 20173018 20172009 ID=Msa0842790-mRNA-1:exon:8322;Parent=Msa0842790-mRNA-1
chr5_4 exon 20173167 20173400 20173167 ID=Msa0842790-mRNA-1:exon:8323;Parent=Msa0842790-mRNA-1
chr5_4 five_prime_UTR 20167722 20167918 20167722 ID=Msa0842790-mRNA-1:five_prime_utr;Parent=Msa0842790-mRNA-1
chr5_4 CDS 20167919 20168507 20167919 ID=Msa0842790-mRNA-1:cds;Parent=Msa0842790-mRNA-1
chr5_4 CDS 20172009 20173018 20172009 ID=Msa0842790-mRNA-1:cds;Parent=Msa0842790-mRNA-1
chr5_4 CDS 20173167 20173238 20173167 ID=Msa0842790-mRNA-1:cds;Parent=Msa0842790-mRNA-1
chr5_4 three_prime_UTR 20173239 20173400 20173239 ID=Msa0842790-mRNA-1:three_prime_utr;Parent=Msa0842790-mRNA-1
Gene Sequence

>Msa0842790

ATGGAAAATAAACCCGAAACCGAACCTGGGTCCGCATCAAACGACCATATGAACATGGAAAACATGATCATTCAGGATTTGGTTTCAGTTCTGCGTACAGCGTTTCTGACGGAACAATTTGATAGCGTTGAAGAAATTTTAGTGAGTAGATATGAGAAACTCCAAACAGAGAATCAACATCTTCAACAGAAGTTTCAATTTGAGGAAAAATTGAGGAAGAGAGATGAAATGTGTGAGAGAGGGAAAAAAGCACAGAATAATTATGAAAAATTGTTGAAAGAAGTTAAGAAAACTAGTTTAGGGTTTAGGGAAACAATTGCTGAGTTAGAAAAGAAGAACAATGATTTGGAGTTGGAAGTTTCTGAGCTTAGAAAAAGAGTTGGTGTTTTGGAGAACGAGAAAAATGCATTTGGGGTGAAAATTAGTGAGTTGGAGGAATCAATGAAGAAGATTAGTGAGACTAGGGTTGATGCTGGGATTGCTGCTGTTGAAGAAAAAGAGATTGGGAATGAGATTGTGGAGGCTGCTCCTTTGCAAAGAATTGAACCTCCCATGAAAAGGAGGAAGGGTGATCAAGGTGCATCATTAGAAGAGAGCTCACAAGTGGAGAACAATGGCTATGGTACACCTAACATGGGATGTGTACATTTGTTGGTGCATTTTGATGGAGAAAGAAGTACACTTTTGTTGAAAGTTGATCCTGATCGGTACTCCTATTTGGATTTGGTTGATGACGTTAGTGGATTGGCTATCAATAATGGACTCAATAATGGAGGTTTGTCTTTTGCCATTTCTTTCTGTCATCCCACTAGTAAGTCAACAATTCACATCAAAACCGATAGTCATGTTCTTGAGATGTTCAAGCTTTATAACATGTGTAGTTGTATCCATGTTTATACAACATTACTTAATCACGAGGGTGATGAAGTTGTTAGTCAAGTCCCTGATATTATACTTAGTGAGTTTGATGATGAATGGAGAGTGAGTGGCGAGCCTCCTCAAAATGAAAGTGATGAAATTCTCTCAGGTTCTAGTTACATAGATGAAGAAAAAAGGGATAATGAGATTAACATTGATGAGCATGGTGATTATGAAGAAAAACATGATCTTATTGCCTCTGAAAATTCTGCCGAAGTTAAAGTGTCAATTTATCCTAATAGAGGTATCAAAGGAAAAATATCTGCTCATGAATTTGAAGGGAAAGTGAAACTAGAAGTTGGTCTATTGTTTGGTGATGTGAATGAGTTTAGAACTGCTCTTAGAGATTTTGTTATACAAGAGGGGTTTGAGATTAAGAGGATAAAAAACGAAAAGGCAAGAGTAACTGCTAGATGTGCTGCAGATGGTTGTTGTTGGCGTATTCATGCATCTCCTGCACCAGATGGGATAACATATAAGATTAAGTCATACAACCCAGGTCATTCTTGTACACGAACAACAAAGAACTCAAATGCCACATCTACTTGGATTGCAAGGAAGTTAGAAAGCAAGTTAAAGGCTGATCCAAATATGAGTTATGCGGGTATGAAACAAGAGCTGTTGGATAACTATGGCATAGAACCAAGTAATGTAGGTCAACTTTATCGTGCAAGAAAAAAGAAAAAGCTAAACGTGCGACGTGGCTCGGATGGGAATGCAGCTTGTTCTAGACAAGTCACTCAAAGTATATAG

Protein sequence

>Msa0842790

MENKPETEPGSASNDHMNMENMIIQDLVSVLRTAFLTEQFDSVEEILVSRYEKLQTENQHLQQKFQFEEKLRKRDEMCERGKKAQNNYEKLLKEVKKTSLGFRETIAELEKKNNDLELEVSELRKRVGVLENEKNAFGVKISELEESMKKISETRVDAGIAAVEEKEIGNEIVEAAPLQRIEPPMKRRKGDQGASLEESSQVENNGYGTPNMGCVHLLVHFDGERSTLLLKVDPDRYSYLDLVDDVSGLAINNGLNNGGLSFAISFCHPTSKSTIHIKTDSHVLEMFKLYNMCSCIHVYTTLLNHEGDEVVSQVPDIILSEFDDEWRVSGEPPQNESDEILSGSSYIDEEKRDNEINIDEHGDYEEKHDLIASENSAEVKVSIYPNRGIKGKISAHEFEGKVKLEVGLLFGDVNEFRTALRDFVIQEGFEIKRIKNEKARVTARCAADGCCWRIHASPAPDGITYKIKSYNPGHSCTRTTKNSNATSTWIARKLESKLKADPNMSYAGMKQELLDNYGIEPSNVGQLYRARKKKKLNVRRGSDGNAACSRQVTQSI*