Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34508.t1 | XP_003604146.2 | 98.8 | 334 | 4 | 0 | 1 | 334 | 431 | 764 | 3.20E-180 | 641 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34508.t1 | Q9LTB0 | 74.6 | 334 | 81 | 3 | 1 | 333 | 421 | 751 | 8.2e-137 | 488.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34508.t1 | G7JVK6 | 98.8 | 334 | 4 | 0 | 1 | 334 | 431 | 764 | 2.3e-180 | 641.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene34508 | 0.840786 | 7.05E-58 | -1.69E-46 |
| MS.gene04918 | MS.gene34508 | 0.875785 | 2.34E-68 | -1.69E-46 |
| MS.gene04919 | MS.gene34508 | 0.839372 | 1.65E-57 | -1.69E-46 |
| MS.gene04920 | MS.gene34508 | 0.860534 | 1.93E-63 | -1.69E-46 |
| MS.gene049283 | MS.gene34508 | 0.849246 | 3.66E-60 | -1.69E-46 |
| MS.gene049368 | MS.gene34508 | 0.853263 | 2.68E-61 | -1.69E-46 |
| MS.gene049411 | MS.gene34508 | 0.828925 | 6.85E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene34508 | 0.843403 | 1.43E-58 | -1.69E-46 |
| MS.gene049680 | MS.gene34508 | 0.806337 | 8.64E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene34508 | 0.807793 | 4.25E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene34508 | 0.872254 | 3.66E-67 | -1.69E-46 |
| MS.gene050085 | MS.gene34508 | 0.802575 | 5.26E-49 | -1.69E-46 |
| MS.gene050213 | MS.gene34508 | 0.800905 | 1.16E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene34508 | 0.81021 | 1.29E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene34508 | 0.81803 | 2.42E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene34508 | 0.811007 | 8.68E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene34508 | 0.834365 | 3.13E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene34508 | 0.843125 | 1.70E-58 | -1.69E-46 |
| MS.gene050654 | MS.gene34508 | 0.821259 | 4.44E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene34508 | 0.844078 | 9.45E-59 | -1.69E-46 |
| MS.gene050752 | MS.gene34508 | 0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene34508 | 0.848166 | 7.29E-60 | -1.69E-46 |
| MS.gene050931 | MS.gene34508 | 0.823116 | 1.65E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene34508 | 0.834844 | 2.37E-56 | -1.69E-46 |
| MS.gene050945 | MS.gene34508 | 0.838714 | 2.44E-57 | -1.69E-46 |
| MS.gene050955 | MS.gene34508 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene34508 | 0.889008 | 3.56E-73 | -1.69E-46 |
| MS.gene051019 | MS.gene34508 | 0.807139 | 5.85E-50 | -1.69E-46 |
| MS.gene051043 | MS.gene34508 | 0.810403 | 1.17E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene34508 | 0.871397 | 7.05E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene34508 | 0.85705 | 2.12E-62 | -1.69E-46 |
| MS.gene051637 | MS.gene34508 | 0.803288 | 3.74E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene34508 | 0.84204 | 3.30E-58 | -1.69E-46 |
| MS.gene051902 | MS.gene34508 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene34508 | 0.824409 | 8.20E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene34508 | 0.818537 | 1.86E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene34508 | 0.846331 | 2.32E-59 | -1.69E-46 |
| MS.gene052296 | MS.gene34508 | 0.825242 | 5.22E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene34508 | 0.862535 | 4.73E-64 | -1.69E-46 |
| MS.gene052335 | MS.gene34508 | 0.808136 | 3.59E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene34508 | 0.825207 | 5.32E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene34508 | 0.839412 | 1.61E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene34508 | 0.816741 | 4.73E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene34508 | 0.816354 | 5.78E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene34508 | 0.832985 | 6.92E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene34508 | 0.835191 | 1.94E-56 | -1.69E-46 |
| MS.gene052793 | MS.gene34508 | 0.833683 | 4.63E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene34508 | 0.808637 | 2.81E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene34508 | 0.825642 | 4.19E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene34508 | 0.838497 | 2.78E-57 | -1.69E-46 |
| MS.gene053228 | MS.gene34508 | 0.830288 | 3.20E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene34508 | -0.836706 | 7.99E-57 | -1.69E-46 |
| MS.gene053427 | MS.gene34508 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene34508 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene34508 | 0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene34508 | 0.818483 | 1.91E-52 | -1.69E-46 |
| MS.gene053931 | MS.gene34508 | 0.822853 | 1.90E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene34508 | 0.85903 | 5.48E-63 | -1.69E-46 |
| MS.gene054142 | MS.gene34508 | 0.822768 | 1.99E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene34508 | 0.845456 | 4.02E-59 | -1.69E-46 |
| MS.gene054403 | MS.gene34508 | 0.813401 | 2.61E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene34508 | 0.814768 | 1.30E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene34508 | 0.81786 | 2.65E-52 | -1.69E-46 |
| MS.gene054709 | MS.gene34508 | 0.808234 | 3.42E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene34508 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene34508 | 0.810422 | 1.16E-50 | -1.69E-46 |
| MS.gene055386 | MS.gene34508 | 0.824551 | 7.59E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene34508 | 0.858228 | 9.51E-63 | -1.69E-46 |
| MS.gene055979 | MS.gene34508 | 0.801371 | 9.29E-49 | -1.69E-46 |
| MS.gene056082 | MS.gene34508 | 0.800634 | 1.31E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene34508 | 0.822068 | 2.89E-53 | -1.69E-46 |
| MS.gene056215 | MS.gene34508 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene34508 | 0.808057 | 3.73E-50 | -1.69E-46 |
| MS.gene056578 | MS.gene34508 | 0.81092 | 9.07E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene34508 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene34508 | 0.847684 | 9.90E-60 | -1.69E-46 |
| MS.gene056831 | MS.gene34508 | 0.819422 | 1.17E-52 | -1.69E-46 |
| MS.gene056834 | MS.gene34508 | 0.802762 | 4.81E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene34508 | 0.810413 | 1.17E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene34508 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene34508 | 0.811356 | 7.29E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene34508 | 0.815274 | 1.01E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene34508 | 0.855126 | 7.78E-62 | -1.69E-46 |
| MS.gene057208 | MS.gene34508 | 0.824318 | 8.61E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene34508 | -0.845651 | 3.56E-59 | -1.69E-46 |
| MS.gene057893 | MS.gene34508 | -0.819098 | 1.39E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene34508 | 0.852798 | 3.64E-61 | -1.69E-46 |
| MS.gene058009 | MS.gene34508 | 0.837064 | 6.48E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene34508 | 0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene34508 | 0.839837 | 1.25E-57 | -1.69E-46 |
| MS.gene058149 | MS.gene34508 | 0.830713 | 2.52E-55 | -1.69E-46 |
| MS.gene058159 | MS.gene34508 | 0.851787 | 7.07E-61 | -1.69E-46 |
| MS.gene058261 | MS.gene34508 | 0.806718 | 7.18E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene34508 | 0.807812 | 4.21E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene34508 | 0.820668 | 6.07E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene34508 | 0.821677 | 3.55E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene34508 | 0.850394 | 1.75E-60 | -1.69E-46 |
| MS.gene058783 | MS.gene34508 | 0.833408 | 5.43E-56 | -1.69E-46 |
| MS.gene059146 | MS.gene34508 | 0.869339 | 3.33E-66 | -1.69E-46 |
| MS.gene059170 | MS.gene34508 | 0.834477 | 2.93E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene34508 | 0.824622 | 7.31E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene34508 | 0.856302 | 3.53E-62 | -1.69E-46 |
| MS.gene05985 | MS.gene34508 | -0.838913 | 2.17E-57 | -1.69E-46 |
| MS.gene059901 | MS.gene34508 | -0.820123 | 8.10E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene34508 | 0.802065 | 6.69E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene34508 | 0.818271 | 2.14E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene34508 | 0.80883 | 2.55E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene34508 | 0.806858 | 6.70E-50 | -1.69E-46 |
| MS.gene060512 | MS.gene34508 | 0.813638 | 2.31E-51 | -1.69E-46 |
| MS.gene060522 | MS.gene34508 | 0.839433 | 1.59E-57 | -1.69E-46 |
| MS.gene060527 | MS.gene34508 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene34508 | 0.803512 | 3.37E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene34508 | 0.801872 | 7.33E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene34508 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene34508 | 0.841903 | 3.58E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene34508 | 0.882143 | 1.33E-70 | -1.69E-46 |
| MS.gene060937 | MS.gene34508 | 0.88957 | 2.15E-73 | -1.69E-46 |
| MS.gene061100 | MS.gene34508 | 0.919598 | 3.69E-87 | -1.69E-46 |
| MS.gene061160 | MS.gene34508 | 0.883829 | 3.22E-71 | -1.69E-46 |
| MS.gene061243 | MS.gene34508 | 0.814245 | 1.70E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34508.t1 | MTR_4g005930 | 98.802 | 334 | 4 | 0 | 1 | 334 | 431 | 764 | 0.0 | 686 |
| MS.gene34508.t1 | MTR_6g045363 | 58.385 | 322 | 128 | 4 | 1 | 322 | 446 | 761 | 5.94e-124 | 373 |
| MS.gene34508.t1 | MTR_1g111120 | 58.360 | 317 | 127 | 3 | 1 | 317 | 443 | 754 | 2.88e-114 | 348 |
| MS.gene34508.t1 | MTR_4g083940 | 39.088 | 307 | 176 | 5 | 1 | 300 | 409 | 711 | 4.11e-64 | 216 |
| MS.gene34508.t1 | MTR_1g069620 | 24.104 | 307 | 204 | 11 | 4 | 300 | 442 | 729 | 8.43e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34508.t1 | AT5G49830 | 74.551 | 334 | 81 | 3 | 1 | 333 | 421 | 751 | 5.98e-165 | 478 |
| MS.gene34508.t1 | AT5G49830 | 74.551 | 334 | 81 | 3 | 1 | 333 | 452 | 782 | 1.21e-164 | 478 |
| MS.gene34508.t1 | AT5G49830 | 74.551 | 334 | 81 | 3 | 1 | 333 | 483 | 813 | 6.42e-164 | 478 |
| MS.gene34508.t1 | AT1G10385 | 59.878 | 329 | 123 | 6 | 1 | 327 | 432 | 753 | 2.14e-126 | 379 |
| MS.gene34508.t1 | AT1G10180 | 37.667 | 300 | 184 | 2 | 1 | 300 | 404 | 700 | 2.84e-63 | 214 |
Find 75 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAAGCTTTGAGGATTC+TGG | 0.189121 | 4.2:+93331284 | MS.gene34508:CDS |
| AAACATATCTGCTGCTATAT+TGG | 0.247414 | 4.2:-93332885 | None:intergenic |
| CTCTCCCCGTTTATTTCCTT+TGG | 0.259208 | 4.2:-93334542 | None:intergenic |
| CCTTACAGGAATCTTGGTTT+AGG | 0.259751 | 4.2:-93331418 | None:intergenic |
| TCTTCTTCGTCCATTGATTC+TGG | 0.265720 | 4.2:-93331266 | None:intergenic |
| TTTCAGAAGATCAGAGCTTT+TGG | 0.266073 | 4.2:+93332972 | MS.gene34508:CDS |
| TCTACGGTTATCATCCTTAC+AGG | 0.270886 | 4.2:-93331432 | None:intergenic |
| CTCCTCCATTCCCGTTGTTC+AGG | 0.299705 | 4.2:-93331482 | None:intergenic |
| CTTACAGGAATCTTGGTTTA+GGG | 0.300947 | 4.2:-93331417 | None:intergenic |
| GCTAGCTAATGCCTCATTAC+TGG | 0.329413 | 4.2:+93331355 | MS.gene34508:CDS |
| GAGGAAGGGCCAAGGCCTTT+AGG | 0.330967 | 4.2:+93333004 | MS.gene34508:CDS |
| TCATTAAACCATTCATCTTC+AGG | 0.346274 | 4.2:-93334482 | None:intergenic |
| GTTTAGGGAGGAGAGCTTCA+TGG | 0.358778 | 4.2:-93331402 | None:intergenic |
| AGCTGACATGTATATAAGTA+TGG | 0.372642 | 4.2:+93331601 | MS.gene34508:CDS |
| TAGCTAGCAGTGCAATCTGC+TGG | 0.380139 | 4.2:-93331340 | None:intergenic |
| TATCATCCTTACAGGAATCT+TGG | 0.382644 | 4.2:-93331424 | None:intergenic |
| AATTGCAAAACATACCTATA+CGG | 0.393334 | 4.2:-93334331 | None:intergenic |
| GAATTGTGAATGAAATTATC+AGG | 0.397966 | 4.2:+93334272 | MS.gene34508:CDS |
| CCAAGGCCTTTAGGTCCTCT+TGG | 0.424024 | 4.2:+93333013 | MS.gene34508:CDS |
| GGAAAACCAAAGGAAATAAA+CGG | 0.424170 | 4.2:+93334536 | MS.gene34508:CDS |
| AATCTGCTGGGCTTCAGTTT+CGG | 0.426706 | 4.2:-93331327 | None:intergenic |
| GAAAACCAAAGGAAATAAAC+GGG | 0.435327 | 4.2:+93334537 | MS.gene34508:CDS |
| GCTTATACAGGACTTCTTTG+AGG | 0.435586 | 4.2:+93331145 | None:intergenic |
| GCCTTTCTGTGGTTCTTCTA+CGG | 0.438652 | 4.2:-93331448 | None:intergenic |
| AAATCGTCATCCTGAACAAC+GGG | 0.443953 | 4.2:+93331472 | MS.gene34508:CDS |
| AGGTCCTCTTGGTCTACAAC+AGG | 0.457183 | 4.2:+93333024 | MS.gene34508:CDS |
| TGAAATATGTCAAGATGCTA+TGG | 0.457337 | 4.2:+93334502 | MS.gene34508:CDS |
| GACTCGTGGGTTCAGTTGAC+AGG | 0.457851 | 4.2:+93331507 | MS.gene34508:CDS |
| CCAAGAGGACCTAAAGGCCT+TGG | 0.469828 | 4.2:-93333013 | None:intergenic |
| ATAGCAGCAGATATGTTTGT+AGG | 0.476239 | 4.2:+93332890 | MS.gene34508:CDS |
| CAACAGGGATGGATCCGTAT+AGG | 0.477278 | 4.2:+93334317 | MS.gene34508:CDS |
| GATGCTATGGAAAGATTAAG+TGG | 0.486477 | 4.2:+93334515 | MS.gene34508:CDS |
| AGCTAGCAGTGCAATCTGCT+GGG | 0.487168 | 4.2:-93331339 | None:intergenic |
| AAAAGCACTACCAGAATCAA+TGG | 0.488194 | 4.2:+93331256 | MS.gene34508:CDS |
| ACCTCTGCTTAGTATGCAGT+TGG | 0.491714 | 4.2:+93331175 | MS.gene34508:CDS |
| AGCAGATATGTTTGTAGGGA+GGG | 0.495602 | 4.2:+93332895 | MS.gene34508:CDS |
| GGACGAAGAAGAAAGCTTTG+AGG | 0.502847 | 4.2:+93331277 | MS.gene34508:CDS |
| GCAGTTGGGAGGACAAGCTC+TGG | 0.512635 | 4.2:+93331190 | MS.gene34508:CDS |
| TTTCATAAAACTGAACAGAA+TGG | 0.516066 | 4.2:+93332862 | MS.gene34508:CDS |
| GTCATCCTGAACAACGGGAA+TGG | 0.517673 | 4.2:+93331477 | MS.gene34508:CDS |
| GAAATGCGGATGAAGTTGAA+TGG | 0.522687 | 4.2:+93331627 | MS.gene34508:CDS |
| CCTAAACCAAGATTCCTGTA+AGG | 0.532557 | 4.2:+93331418 | MS.gene34508:CDS |
| TGACAAATACCGACCGTTGG+AGG | 0.534564 | 4.2:-93334236 | None:intergenic |
| CAGGACTTCTTTGAGGATGT+AGG | 0.541656 | 4.2:+93331152 | None:intergenic |
| TAGCAGCAGATATGTTTGTA+GGG | 0.544112 | 4.2:+93332891 | MS.gene34508:CDS |
| GACATGTATATAAGTATGGA+AGG | 0.560326 | 4.2:+93331605 | MS.gene34508:CDS |
| TGGAAACAAAATTGTACGAA+TGG | 0.565828 | 4.2:+93331304 | MS.gene34508:CDS |
| ATGATATTGAGGAAGGGCCA+AGG | 0.574464 | 4.2:+93332996 | MS.gene34508:CDS |
| TGTAGACCAAGAGGACCTAA+AGG | 0.584749 | 4.2:-93333019 | None:intergenic |
| GAGAGCTTCATGGCTGCGCG+TGG | 0.585405 | 4.2:-93331392 | None:intergenic |
| TTGGGAGGACAAGCTCTGGA+AGG | 0.588760 | 4.2:+93331194 | MS.gene34508:CDS |
| CCTCTGCTTAGTATGCAGTT+GGG | 0.589651 | 4.2:+93331176 | MS.gene34508:CDS |
| GTGCAGAGACAGATGCAGTA+GGG | 0.590473 | 4.2:-93334577 | None:intergenic |
| TGTGAATGAAATTATCAGGA+AGG | 0.593693 | 4.2:+93334276 | MS.gene34508:CDS |
| ACAGGAATCTTGGTTTAGGG+AGG | 0.595294 | 4.2:-93331414 | None:intergenic |
| AAGATTAAGTGGAAAACCAA+AGG | 0.598349 | 4.2:+93334526 | MS.gene34508:CDS |
| TTTGGGATGATATTGAGGAA+GGG | 0.600436 | 4.2:+93332990 | MS.gene34508:CDS |
| TGGGAGGACAAGCTCTGGAA+GGG | 0.602271 | 4.2:+93331195 | MS.gene34508:CDS |
| CCTTGACAAATACCGACCGT+TGG | 0.602728 | 4.2:-93334239 | None:intergenic |
| ACCGTAGAAGAACCACAGAA+AGG | 0.603747 | 4.2:+93331447 | MS.gene34508:CDS |
| TGTGCAGAGACAGATGCAGT+AGG | 0.604544 | 4.2:-93334578 | None:intergenic |
| ATCCTGAACAACGGGAATGG+AGG | 0.608982 | 4.2:+93331480 | MS.gene34508:CDS |
| TATAAGTATGGAAGGAAATG+CGG | 0.609812 | 4.2:+93331613 | MS.gene34508:CDS |
| GTGATCTGCCTGAAGATGAA+TGG | 0.612166 | 4.2:+93334474 | MS.gene34508:intron |
| AAATCAGGCTCAAAGCATGT+TGG | 0.615504 | 4.2:-93331550 | None:intergenic |
| GGAATGGAGGAGACGACTCG+TGG | 0.616377 | 4.2:+93331493 | MS.gene34508:CDS |
| TAGTTCATCAGCCAGTAATG+AGG | 0.617154 | 4.2:-93331366 | None:intergenic |
| CAGCAGATATGTTTGTAGGG+AGG | 0.620591 | 4.2:+93332894 | MS.gene34508:CDS |
| CCAACGGTCGGTATTTGTCA+AGG | 0.628869 | 4.2:+93334239 | MS.gene34508:CDS |
| CCCAACTGCATACTAAGCAG+AGG | 0.650328 | 4.2:-93331176 | None:intergenic |
| AAAATCGTCATCCTGAACAA+CGG | 0.651815 | 4.2:+93331471 | MS.gene34508:CDS |
| CATACCTGTTGTAGACCAAG+AGG | 0.660216 | 4.2:-93333028 | None:intergenic |
| GAATGGAGGAGACGACTCGT+GGG | 0.664709 | 4.2:+93331494 | MS.gene34508:CDS |
| CTGCTTAGTATGCAGTTGGG+AGG | 0.693555 | 4.2:+93331179 | MS.gene34508:CDS |
| AAAACCAAAGGAAATAAACG+GGG | 0.769107 | 4.2:+93334538 | MS.gene34508:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+AGG | - | chr4.2:93332258-93332239 | None:intergenic | 0.0% |
| !!! | TTAATATAAATAATTTTAAA+TGG | - | chr4.2:93333714-93333733 | None:intergenic | 0.0% |
| !! | AACGTTAAAAAAAAATTATA+TGG | - | chr4.2:93334176-93334195 | None:intergenic | 10.0% |
| !! | TAAATATTATAACAAATACA+AGG | - | chr4.2:93334011-93334030 | None:intergenic | 10.0% |
| !! | ATATAATAAACCACAAAAAT+TGG | - | chr4.2:93332102-93332121 | None:intergenic | 15.0% |
| !! | TAAGTTATTAAGATATTCAA+AGG | - | chr4.2:93332693-93332712 | None:intergenic | 15.0% |
| !! | TCTACAATTAGAAATATATA+TGG | - | chr4.2:93331990-93332009 | None:intergenic | 15.0% |
| !! | TTATTAACATTAGCTATAAT+GGG | + | chr4.2:93333601-93333620 | MS.gene34508:intron | 15.0% |
| !! | TTGAATATCTTAATAACTTA+TGG | + | chr4.2:93332693-93332712 | MS.gene34508:intron | 15.0% |
| !!! | CAAATTGGATAATTTTATTT+GGG | + | chr4.2:93333149-93333168 | MS.gene34508:intron | 15.0% |
| !!! | TGTTGATTTTTAAAAATTAC+AGG | + | chr4.2:93331937-93331956 | MS.gene34508:intron | 15.0% |
| !!! | TTTTTAAAAATTACAGGATT+AGG | + | chr4.2:93331943-93331962 | MS.gene34508:intron | 15.0% |
| !! | AAGAACTCAAGTTTATTATT+GGG | - | chr4.2:93333403-93333422 | None:intergenic | 20.0% |
| !! | AGTATCAATTTAAGAAATCA+AGG | - | chr4.2:93333571-93333590 | None:intergenic | 20.0% |
| !! | CAAAAGAAATATTACTCATT+GGG | + | chr4.2:93332309-93332328 | MS.gene34508:intron | 20.0% |
| !! | CTTATTAACATTAGCTATAA+TGG | + | chr4.2:93333600-93333619 | MS.gene34508:intron | 20.0% |
| !! | TAAAACATAGTTAGCATTTA+TGG | - | chr4.2:93332636-93332655 | None:intergenic | 20.0% |
| !!! | AAACAATTTTCAGTTAGTTT+TGG | + | chr4.2:93333077-93333096 | MS.gene34508:intron | 20.0% |
| !!! | ACAAATTTTCTTATAAGTTG+TGG | - | chr4.2:93333988-93334007 | None:intergenic | 20.0% |
| !!! | ATTATCCAATTTGCTTATAA+AGG | - | chr4.2:93333142-93333161 | None:intergenic | 20.0% |
| !!! | ATTTGTGAAATTGGTAATTA+AGG | + | chr4.2:93332052-93332071 | MS.gene34508:intron | 20.0% |
| !!! | CAATTACATGTTTTAATCAA+AGG | + | chr4.2:93333533-93333552 | MS.gene34508:intron | 20.0% |
| !!! | GCAAATTGGATAATTTTATT+TGG | + | chr4.2:93333148-93333167 | MS.gene34508:intron | 20.0% |
| !!! | TTTTTGGAAATTTGTGAAAT+TGG | + | chr4.2:93332043-93332062 | MS.gene34508:intron | 20.0% |
| ! | AATTGCAAAACATACCTATA+CGG | - | chr4.2:93334334-93334353 | None:intergenic | 25.0% |
| ! | ATGCAATTGAAATTTGATCA+TGG | + | chr4.2:93333048-93333067 | MS.gene34508:intron | 25.0% |
| ! | ATTAAAACATGTAATTGACG+AGG | - | chr4.2:93333530-93333549 | None:intergenic | 25.0% |
| ! | CAAGAACTCAAGTTTATTAT+TGG | - | chr4.2:93333404-93333423 | None:intergenic | 25.0% |
| ! | CAATTTATTATTTCCTTCTG+TGG | - | chr4.2:93332354-93332373 | None:intergenic | 25.0% |
| ! | CCAAAAGAAATATTACTCAT+TGG | + | chr4.2:93332308-93332327 | MS.gene34508:intron | 25.0% |
| ! | GAATTGTGAATGAAATTATC+AGG | + | chr4.2:93334272-93334291 | MS.gene34508:CDS | 25.0% |
| ! | TAATAACTTATGGAACATGT+TGG | + | chr4.2:93332703-93332722 | MS.gene34508:intron | 25.0% |
| ! | TATACCTGAAAAATCAAAGA+CGG | - | chr4.2:93331656-93331675 | None:intergenic | 25.0% |
| ! | TATTATTCTGTTTAAACCAC+TGG | - | chr4.2:93333245-93333264 | None:intergenic | 25.0% |
| ! | TATTTACATGCCTTAAACTT+TGG | - | chr4.2:93333347-93333366 | None:intergenic | 25.0% |
| ! | TCAATTTAAGAAATCAAGGA+TGG | - | chr4.2:93333567-93333586 | None:intergenic | 25.0% |
| ! | TGATTCCTTTATAAGCAAAT+TGG | + | chr4.2:93333134-93333153 | MS.gene34508:intron | 25.0% |
| ! | TTTCATAAAACTGAACAGAA+TGG | + | chr4.2:93332862-93332881 | MS.gene34508:CDS | 25.0% |
| !! | AAATCTTCAAAACTGATTCA+TGG | - | chr4.2:93331708-93331727 | None:intergenic | 25.0% |
| !! | AAGTGTTAAATTTAAAACCC+AGG | - | chr4.2:93331685-93331704 | None:intergenic | 25.0% |
| !! | CCAATGAGTAATATTTCTTT+TGG | - | chr4.2:93332311-93332330 | None:intergenic | 25.0% |
| !! | TATTTCTTTTGGTAGATGAA+TGG | - | chr4.2:93332300-93332319 | None:intergenic | 25.0% |
| !! | TTAAACTCTGCATTTTATCA+AGG | - | chr4.2:93332504-93332523 | None:intergenic | 25.0% |
| !! | TTTTTGTTGAGTTTTACATG+CGG | + | chr4.2:93332437-93332456 | MS.gene34508:intron | 25.0% |
| !!! | ACAACTTTTTTACATCTTAG+TGG | + | chr4.2:93332555-93332574 | MS.gene34508:intron | 25.0% |
| !!! | CAACTTTTTTACATCTTAGT+GGG | + | chr4.2:93332556-93332575 | MS.gene34508:intron | 25.0% |
| !!! | CTTTGATTTTTCAGGTATAA+TGG | + | chr4.2:93331657-93331676 | MS.gene34508:intron | 25.0% |
| !!! | TTACAGAAACTGTTATTTTG+TGG | + | chr4.2:93332948-93332967 | MS.gene34508:CDS | 25.0% |
| AAAAAAGTTGACGTGTAACT+AGG | - | chr4.2:93332387-93332406 | None:intergenic | 30.0% | |
| AAAACCAAAGGAAATAAACG+GGG | + | chr4.2:93334538-93334557 | MS.gene34508:CDS | 30.0% | |
| AAACATATCTGCTGCTATAT+TGG | - | chr4.2:93332888-93332907 | None:intergenic | 30.0% | |
| AAATGCAGATAGAATGTTGA+TGG | - | chr4.2:93334376-93334395 | None:intergenic | 30.0% | |
| AAGATTAAGTGGAAAACCAA+AGG | + | chr4.2:93334526-93334545 | MS.gene34508:CDS | 30.0% | |
| AGACTGTTATGTTATTATCC+AGG | + | chr4.2:93332835-93332854 | MS.gene34508:intron | 30.0% | |
| AGCTGACATGTATATAAGTA+TGG | + | chr4.2:93331601-93331620 | MS.gene34508:CDS | 30.0% | |
| AGTTGAAGCATAAACAGAAA+CGG | - | chr4.2:93332797-93332816 | None:intergenic | 30.0% | |
| CCAAACTAAACCAAAGTTTA+AGG | + | chr4.2:93333334-93333353 | MS.gene34508:intron | 30.0% | |
| GAAAACCAAAGGAAATAAAC+GGG | + | chr4.2:93334537-93334556 | MS.gene34508:CDS | 30.0% | |
| GACATGTATATAAGTATGGA+AGG | + | chr4.2:93331605-93331624 | MS.gene34508:CDS | 30.0% | |
| GCAGAAAATTGAAACTCTTA+CGG | + | chr4.2:93332128-93332147 | MS.gene34508:intron | 30.0% | |
| GCATTTCACATGTATTTATC+TGG | - | chr4.2:93333760-93333779 | None:intergenic | 30.0% | |
| GGAAAACCAAAGGAAATAAA+CGG | + | chr4.2:93334536-93334555 | MS.gene34508:CDS | 30.0% | |
| GGGCACATTTATTTACTTAT+TGG | + | chr4.2:93333925-93333944 | MS.gene34508:intron | 30.0% | |
| GTAAAAAAGTTGTCTACCTA+GGG | - | chr4.2:93332548-93332567 | None:intergenic | 30.0% | |
| GTCCTTTCAAAAACACTTTA+GGG | + | chr4.2:93333905-93333924 | MS.gene34508:intron | 30.0% | |
| TAAACAAGATGTTTCGAAGT+TGG | - | chr4.2:93333672-93333691 | None:intergenic | 30.0% | |
| TAAATACATGTGAAATGCAC+AGG | + | chr4.2:93333762-93333781 | MS.gene34508:intron | 30.0% | |
| TATAAGTATGGAAGGAAATG+CGG | + | chr4.2:93331613-93331632 | MS.gene34508:CDS | 30.0% | |
| TCATTAAACCATTCATCTTC+AGG | - | chr4.2:93334485-93334504 | None:intergenic | 30.0% | |
| TGAAATATGTCAAGATGCTA+TGG | + | chr4.2:93334502-93334521 | MS.gene34508:CDS | 30.0% | |
| TGGAAACAAAATTGTACGAA+TGG | + | chr4.2:93331304-93331323 | MS.gene34508:CDS | 30.0% | |
| TGTAAAAAAGTTGTCTACCT+AGG | - | chr4.2:93332549-93332568 | None:intergenic | 30.0% | |
| TGTGAATGAAATTATCAGGA+AGG | + | chr4.2:93334276-93334295 | MS.gene34508:CDS | 30.0% | |
| ! | AATACTAACCTTTTGGATTC+TGG | + | chr4.2:93333880-93333899 | MS.gene34508:intron | 30.0% |
| ! | AATCTGATTCTGTAGTCTTA+TGG | + | chr4.2:93331913-93331932 | MS.gene34508:intron | 30.0% |
| ! | ATTCTAAAGAGCAATACATG+CGG | - | chr4.2:93334058-93334077 | None:intergenic | 30.0% |
| ! | CCTTAAACTTTGGTTTAGTT+TGG | - | chr4.2:93333337-93333356 | None:intergenic | 30.0% |
| ! | GTCAATCAATACTAACCTTT+TGG | + | chr4.2:93333873-93333892 | MS.gene34508:intron | 30.0% |
| ! | TTTTGTTGAGTTTTACATGC+GGG | + | chr4.2:93332438-93332457 | MS.gene34508:intron | 30.0% |
| !! | CTAAAGTGTTTTTGAAAGGA+CGG | - | chr4.2:93333906-93333925 | None:intergenic | 30.0% |
| !! | GGATTCTGAGAATATTTTCT+TGG | + | chr4.2:93332073-93332092 | MS.gene34508:intron | 30.0% |
| !! | TATCTATCTCCTGGTTTTTA+TGG | + | chr4.2:93332466-93332485 | MS.gene34508:intron | 30.0% |
| !! | TTCTTGGTAACCAATTTTTG+TGG | + | chr4.2:93332089-93332108 | MS.gene34508:intron | 30.0% |
| !! | TTGTGGAGAATTTTCTGAAA+TGG | - | chr4.2:93333971-93333990 | None:intergenic | 30.0% |
| !!! | TAACGTTGTGCAGTTTTATT+TGG | + | chr4.2:93334189-93334208 | MS.gene34508:intron | 30.0% |
| !!! | TCGAATGTTGGCTAATTTTT+TGG | + | chr4.2:93332027-93332046 | MS.gene34508:intron | 30.0% |
| !!! | TGTGGAGAATTTTCTGAAAT+GGG | - | chr4.2:93333970-93333989 | None:intergenic | 30.0% |
| AAAATCGTCATCCTGAACAA+CGG | + | chr4.2:93331471-93331490 | MS.gene34508:CDS | 35.0% | |
| AAGAAACTTAGCTGTGTATG+TGG | - | chr4.2:93333460-93333479 | None:intergenic | 35.0% | |
| AAGACTACAGAATCAGATTC+TGG | - | chr4.2:93331912-93331931 | None:intergenic | 35.0% | |
| AGTTTGCGTCTATTGATCTT+CGG | - | chr4.2:93334114-93334133 | None:intergenic | 35.0% | |
| ATAGCAGCAGATATGTTTGT+AGG | + | chr4.2:93332890-93332909 | MS.gene34508:CDS | 35.0% | |
| ATTGTTTCCATTGGAAGTTG+TGG | + | chr4.2:93334399-93334418 | MS.gene34508:intron | 35.0% | |
| CGTCCTTTCAAAAACACTTT+AGG | + | chr4.2:93333904-93333923 | MS.gene34508:intron | 35.0% | |
| CTGAAACACTGATACCTAAT+AGG | + | chr4.2:93333103-93333122 | MS.gene34508:intron | 35.0% | |
| CTTACAGGAATCTTGGTTTA+GGG | - | chr4.2:93331420-93331439 | None:intergenic | 35.0% | |
| GAATCAATTCGTGTCCTATT+AGG | - | chr4.2:93333120-93333139 | None:intergenic | 35.0% | |
| GATATGTGTAACGAGGAAAA+AGG | + | chr4.2:93331885-93331904 | MS.gene34508:intron | 35.0% | |
| GATGCTATGGAAAGATTAAG+TGG | + | chr4.2:93334515-93334534 | MS.gene34508:CDS | 35.0% | |
| GCATTTGCAATTGTTTCCAT+TGG | + | chr4.2:93334390-93334409 | MS.gene34508:intron | 35.0% | |
| TAGCAGCAGATATGTTTGTA+GGG | + | chr4.2:93332891-93332910 | MS.gene34508:CDS | 35.0% | |
| TATCATCCTTACAGGAATCT+TGG | - | chr4.2:93331427-93331446 | None:intergenic | 35.0% | |
| TATTCCACTCCATAAAAACC+AGG | - | chr4.2:93332478-93332497 | None:intergenic | 35.0% | |
| TCGATGAAGAATGAACAAGA+AGG | - | chr4.2:93331744-93331763 | None:intergenic | 35.0% | |
| TGTTCATTGTATCAAGCACA+TGG | + | chr4.2:93333842-93333861 | MS.gene34508:intron | 35.0% | |
| TTTGGATACTCTGCATTCTT+CGG | - | chr4.2:93333319-93333338 | None:intergenic | 35.0% | |
| ! | TGTTTAAACCACTGGTTGTT+AGG | - | chr4.2:93333237-93333256 | None:intergenic | 35.0% |
| ! | TTCAGAAGATCAGAGCTTTT+GGG | + | chr4.2:93332973-93332992 | MS.gene34508:CDS | 35.0% |
| ! | TTTCAGAAGATCAGAGCTTT+TGG | + | chr4.2:93332972-93332991 | MS.gene34508:CDS | 35.0% |
| ! | TTTCAGGTATAATGGAACCT+GGG | + | chr4.2:93331665-93331684 | MS.gene34508:intron | 35.0% |
| ! | TTTGAGCCTGATTTTTACAG+AGG | + | chr4.2:93331559-93331578 | MS.gene34508:CDS | 35.0% |
| ! | TTTGGGATGATATTGAGGAA+GGG | + | chr4.2:93332990-93333009 | MS.gene34508:CDS | 35.0% |
| ! | TTTGTTGAGTTTTACATGCG+GGG | + | chr4.2:93332439-93332458 | MS.gene34508:intron | 35.0% |
| !! | AAAAGCACTACCAGAATCAA+TGG | + | chr4.2:93331256-93331275 | MS.gene34508:CDS | 35.0% |
| !! | AGAATGTTGATGGTGAAACA+TGG | - | chr4.2:93334366-93334385 | None:intergenic | 35.0% |
| !! | GATTCCGTCTTTGATTTTTC+AGG | + | chr4.2:93331649-93331668 | MS.gene34508:CDS | 35.0% |
| !! | TCAGTTTTATGAAAAGCTCC+TGG | - | chr4.2:93332856-93332875 | None:intergenic | 35.0% |
| !! | TGCCCTAAAGTGTTTTTGAA+AGG | - | chr4.2:93333910-93333929 | None:intergenic | 35.0% |
| !!! | GAATTTTCTGAAATGGGTGT+TGG | - | chr4.2:93333964-93333983 | None:intergenic | 35.0% |
| !!! | TTTTACATCTTAGTGGGTTC+AGG | + | chr4.2:93332562-93332581 | MS.gene34508:intron | 35.0% |
| !!! | TTTTCAGGTATAATGGAACC+TGG | + | chr4.2:93331664-93331683 | MS.gene34508:intron | 35.0% |
| !!! | TTTTGGGATGATATTGAGGA+AGG | + | chr4.2:93332989-93333008 | MS.gene34508:CDS | 35.0% |
| AAATCAGGCTCAAAGCATGT+TGG | - | chr4.2:93331553-93331572 | None:intergenic | 40.0% | |
| AAATCGTCATCCTGAACAAC+GGG | + | chr4.2:93331472-93331491 | MS.gene34508:CDS | 40.0% | |
| AACATTCGAAACTGTGGACA+AGG | - | chr4.2:93332016-93332035 | None:intergenic | 40.0% | |
| ACACTTCTCATGCATAACAC+TGG | - | chr4.2:93331795-93331814 | None:intergenic | 40.0% | |
| AGCAATACATGCGGTTATGT+TGG | - | chr4.2:93334049-93334068 | None:intergenic | 40.0% | |
| AGCAGATATGTTTGTAGGGA+GGG | + | chr4.2:93332895-93332914 | MS.gene34508:CDS | 40.0% | |
| ATTTCCTTCTGTGGACAAAG+AGG | - | chr4.2:93332345-93332364 | None:intergenic | 40.0% | |
| CACCATCCTCTGTAAAAATC+AGG | - | chr4.2:93331568-93331587 | None:intergenic | 40.0% | |
| CCTAAACCAAGATTCCTGTA+AGG | + | chr4.2:93331418-93331437 | MS.gene34508:CDS | 40.0% | |
| CCTTACAGGAATCTTGGTTT+AGG | - | chr4.2:93331421-93331440 | None:intergenic | 40.0% | |
| GAAATGCGGATGAAGTTGAA+TGG | + | chr4.2:93331627-93331646 | MS.gene34508:CDS | 40.0% | |
| TAGTTCATCAGCCAGTAATG+AGG | - | chr4.2:93331369-93331388 | None:intergenic | 40.0% | |
| TCTACGGTTATCATCCTTAC+AGG | - | chr4.2:93331435-93331454 | None:intergenic | 40.0% | |
| TGGTTGTTAGGAACTTGGAT+AGG | - | chr4.2:93333225-93333244 | None:intergenic | 40.0% | |
| TTAGCCAACATTCGAAACTG+TGG | - | chr4.2:93332022-93332041 | None:intergenic | 40.0% | |
| TTGTCCACAGTTTCGAATGT+TGG | + | chr4.2:93332015-93332034 | MS.gene34508:intron | 40.0% | |
| TTGTTGGGAACTTCTCTGTT+GGG | + | chr4.2:93331862-93331881 | MS.gene34508:intron | 40.0% | |
| ! | AGCCTGATTTTTACAGAGGA+TGG | + | chr4.2:93331563-93331582 | MS.gene34508:CDS | 40.0% |
| ! | ATGACGATTTTGCCTTTCTG+TGG | - | chr4.2:93331462-93331481 | None:intergenic | 40.0% |
| ! | ATGTCAGCATTTTCTGCAAC+AGG | + | chr4.2:93334301-93334320 | MS.gene34508:CDS | 40.0% |
| ! | ATTTGGGACGCATCTTTGTA+AGG | + | chr4.2:93333165-93333184 | MS.gene34508:intron | 40.0% |
| ! | CCTGCTCTTTTCTTCTTGTT+GGG | + | chr4.2:93331847-93331866 | MS.gene34508:intron | 40.0% |
| ! | TGTCAGCATTTTCTGCAACA+GGG | + | chr4.2:93334302-93334321 | MS.gene34508:CDS | 40.0% |
| !! | ATCTCCTGGTTTTTATGGAG+TGG | + | chr4.2:93332471-93332490 | MS.gene34508:intron | 40.0% |
| !! | CATCTTTGTAAGGCTAGTCT+TGG | + | chr4.2:93333175-93333194 | MS.gene34508:intron | 40.0% |
| !! | GAAGAAAGCTTTGAGGATTC+TGG | + | chr4.2:93331284-93331303 | MS.gene34508:CDS | 40.0% |
| !! | TCTTCTTCGTCCATTGATTC+TGG | - | chr4.2:93331269-93331288 | None:intergenic | 40.0% |
| !!! | GAGCTTTTGGGATGATATTG+AGG | + | chr4.2:93332985-93333004 | MS.gene34508:CDS | 40.0% |
| AACTTGGATAGGTCAGTGCT+TGG | - | chr4.2:93333214-93333233 | None:intergenic | 45.0% | |
| AAGTTGTCTACCTAGGGACA+TGG | - | chr4.2:93332542-93332561 | None:intergenic | 45.0% | |
| AATCTGCTGGGCTTCAGTTT+CGG | - | chr4.2:93331330-93331349 | None:intergenic | 45.0% | |
| ACAGGAATCTTGGTTTAGGG+AGG | - | chr4.2:93331417-93331436 | None:intergenic | 45.0% | |
| ACCGTAGAAGAACCACAGAA+AGG | + | chr4.2:93331447-93331466 | MS.gene34508:CDS | 45.0% | |
| ACCTCTGCTTAGTATGCAGT+TGG | + | chr4.2:93331175-93331194 | MS.gene34508:CDS | 45.0% | |
| AGTTGTCTACCTAGGGACAT+GGG | - | chr4.2:93332541-93332560 | None:intergenic | 45.0% | |
| ATGATATTGAGGAAGGGCCA+AGG | + | chr4.2:93332996-93333015 | MS.gene34508:CDS | 45.0% | |
| CAGCAGATATGTTTGTAGGG+AGG | + | chr4.2:93332894-93332913 | MS.gene34508:CDS | 45.0% | |
| CATACCTGTTGTAGACCAAG+AGG | - | chr4.2:93333031-93333050 | None:intergenic | 45.0% | |
| CCCAACAAGAAGAAAAGAGC+AGG | - | chr4.2:93331850-93331869 | None:intergenic | 45.0% | |
| CCTCTGCTTAGTATGCAGTT+GGG | + | chr4.2:93331176-93331195 | MS.gene34508:CDS | 45.0% | |
| CTCTCCCCGTTTATTTCCTT+TGG | - | chr4.2:93334545-93334564 | None:intergenic | 45.0% | |
| CTTGTTGGGAACTTCTCTGT+TGG | + | chr4.2:93331861-93331880 | MS.gene34508:intron | 45.0% | |
| GAAGAAAAGAGCAGGCAGAA+AGG | - | chr4.2:93331842-93331861 | None:intergenic | 45.0% | |
| GCCTTTCTGTGGTTCTTCTA+CGG | - | chr4.2:93331451-93331470 | None:intergenic | 45.0% | |
| GCTAGCTAATGCCTCATTAC+TGG | + | chr4.2:93331355-93331374 | MS.gene34508:CDS | 45.0% | |
| GGACGAAGAAGAAAGCTTTG+AGG | + | chr4.2:93331277-93331296 | MS.gene34508:CDS | 45.0% | |
| GGCAGAAAGGAAAAGTAGAG+AGG | - | chr4.2:93331829-93331848 | None:intergenic | 45.0% | |
| GTGATCTGCCTGAAGATGAA+TGG | + | chr4.2:93334474-93334493 | MS.gene34508:intron | 45.0% | |
| TCCAAGTTCCTAACAACCAG+TGG | + | chr4.2:93333226-93333245 | MS.gene34508:intron | 45.0% | |
| TGTAGACCAAGAGGACCTAA+AGG | - | chr4.2:93333022-93333041 | None:intergenic | 45.0% | |
| TGTTCCTCTTTGTCCACAGA+AGG | + | chr4.2:93332338-93332357 | MS.gene34508:intron | 45.0% | |
| TGTTGGGAACTTCTCTGTTG+GGG | + | chr4.2:93331863-93331882 | MS.gene34508:intron | 45.0% | |
| TGTTGGGGATATGTGTAACG+AGG | + | chr4.2:93331878-93331897 | MS.gene34508:intron | 45.0% | |
| TTCAGAGCCACAACTTCCAA+TGG | - | chr4.2:93334409-93334428 | None:intergenic | 45.0% | |
| ! | ACCACTGGTTGTTAGGAACT+TGG | - | chr4.2:93333230-93333249 | None:intergenic | 45.0% |
| ! | AGCATTTTCTGCAACAGGGA+TGG | + | chr4.2:93334306-93334325 | MS.gene34508:CDS | 45.0% |
| ! | GCCTGCTCTTTTCTTCTTGT+TGG | + | chr4.2:93331846-93331865 | MS.gene34508:intron | 45.0% |
| ! | GTTGTGTGTTTTGCCTCCAA+CGG | + | chr4.2:93334223-93334242 | MS.gene34508:CDS | 45.0% |
| !! | GAAACTCTTACGGCATTGAC+TGG | + | chr4.2:93332138-93332157 | MS.gene34508:intron | 45.0% |
| AAGGACGGCCAGAATCCAAA+AGG | - | chr4.2:93333891-93333910 | None:intergenic | 50.0% | |
| AGCTAGCAGTGCAATCTGCT+GGG | - | chr4.2:93331342-93331361 | None:intergenic | 50.0% | |
| AGGTCCTCTTGGTCTACAAC+AGG | + | chr4.2:93333024-93333043 | MS.gene34508:CDS | 50.0% | |
| ATCCTGAACAACGGGAATGG+AGG | + | chr4.2:93331480-93331499 | MS.gene34508:CDS | 50.0% | |
| CAACAGGGATGGATCCGTAT+AGG | + | chr4.2:93334317-93334336 | MS.gene34508:CDS | 50.0% | |
| CCAACGGTCGGTATTTGTCA+AGG | + | chr4.2:93334239-93334258 | MS.gene34508:CDS | 50.0% | |
| CCCAACTGCATACTAAGCAG+AGG | - | chr4.2:93331179-93331198 | None:intergenic | 50.0% | |
| CCTTGACAAATACCGACCGT+TGG | - | chr4.2:93334242-93334261 | None:intergenic | 50.0% | |
| CTGCTTAGTATGCAGTTGGG+AGG | + | chr4.2:93331179-93331198 | MS.gene34508:CDS | 50.0% | |
| GTCATCCTGAACAACGGGAA+TGG | + | chr4.2:93331477-93331496 | MS.gene34508:CDS | 50.0% | |
| GTGCAGAGACAGATGCAGTA+GGG | - | chr4.2:93334580-93334599 | None:intergenic | 50.0% | |
| GTTTAGGGAGGAGAGCTTCA+TGG | - | chr4.2:93331405-93331424 | None:intergenic | 50.0% | |
| TAGCTAGCAGTGCAATCTGC+TGG | - | chr4.2:93331343-93331362 | None:intergenic | 50.0% | |
| TGACAAATACCGACCGTTGG+AGG | - | chr4.2:93334239-93334258 | None:intergenic | 50.0% | |
| TGTGCAGAGACAGATGCAGT+AGG | - | chr4.2:93334581-93334600 | None:intergenic | 50.0% | |
| ! | TGTGTTTTGCCTCCAACGGT+CGG | + | chr4.2:93334227-93334246 | MS.gene34508:CDS | 50.0% |
| !! | CATCTTAGTGGGTTCAGGCT+TGG | + | chr4.2:93332567-93332586 | MS.gene34508:intron | 50.0% |
| CCAAGAGGACCTAAAGGCCT+TGG | - | chr4.2:93333016-93333035 | None:intergenic | 55.0% | |
| CCAAGGCCTTTAGGTCCTCT+TGG | + | chr4.2:93333013-93333032 | MS.gene34508:CDS | 55.0% | |
| CGGGGTGCATATCTATCTCC+TGG | + | chr4.2:93332457-93332476 | MS.gene34508:intron | 55.0% | |
| CTCCTCCATTCCCGTTGTTC+AGG | - | chr4.2:93331485-93331504 | None:intergenic | 55.0% | |
| GAATGGAGGAGACGACTCGT+GGG | + | chr4.2:93331494-93331513 | MS.gene34508:CDS | 55.0% | |
| GACTCGTGGGTTCAGTTGAC+AGG | + | chr4.2:93331507-93331526 | MS.gene34508:CDS | 55.0% | |
| TGTCTACCTAGGGACATGGG+AGG | - | chr4.2:93332538-93332557 | None:intergenic | 55.0% | |
| !! | TGGGAGGACAAGCTCTGGAA+GGG | + | chr4.2:93331195-93331214 | MS.gene34508:CDS | 55.0% |
| !! | TTGGGAGGACAAGCTCTGGA+AGG | + | chr4.2:93331194-93331213 | MS.gene34508:CDS | 55.0% |
| GAAGCTCCTCCCATGTCCCT+AGG | + | chr4.2:93332529-93332548 | MS.gene34508:intron | 60.0% | |
| GAGGAAGGGCCAAGGCCTTT+AGG | + | chr4.2:93333004-93333023 | MS.gene34508:CDS | 60.0% | |
| GCAGTTGGGAGGACAAGCTC+TGG | + | chr4.2:93331190-93331209 | MS.gene34508:CDS | 60.0% | |
| GGAATGGAGGAGACGACTCG+TGG | + | chr4.2:93331493-93331512 | MS.gene34508:CDS | 60.0% | |
| GAGAGCTTCATGGCTGCGCG+TGG | - | chr4.2:93331395-93331414 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 93331155 | 93334637 | 93331155 | ID=MS.gene34508 |
| chr4.2 | mRNA | 93331155 | 93334637 | 93331155 | ID=MS.gene34508.t1;Parent=MS.gene34508 |
| chr4.2 | exon | 93331155 | 93331670 | 93331155 | ID=MS.gene34508.t1.exon1;Parent=MS.gene34508.t1 |
| chr4.2 | CDS | 93331155 | 93331670 | 93331155 | ID=cds.MS.gene34508.t1;Parent=MS.gene34508.t1 |
| chr4.2 | exon | 93332857 | 93333045 | 93332857 | ID=MS.gene34508.t1.exon2;Parent=MS.gene34508.t1 |
| chr4.2 | CDS | 93332857 | 93333045 | 93332857 | ID=cds.MS.gene34508.t1;Parent=MS.gene34508.t1 |
| chr4.2 | exon | 93334202 | 93334338 | 93334202 | ID=MS.gene34508.t1.exon3;Parent=MS.gene34508.t1 |
| chr4.2 | CDS | 93334202 | 93334338 | 93334202 | ID=cds.MS.gene34508.t1;Parent=MS.gene34508.t1 |
| chr4.2 | exon | 93334475 | 93334637 | 93334475 | ID=MS.gene34508.t1.exon4;Parent=MS.gene34508.t1 |
| chr4.2 | CDS | 93334475 | 93334637 | 93334475 | ID=cds.MS.gene34508.t1;Parent=MS.gene34508.t1 |
| Gene Sequence |
| Protein sequence |
