AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073883


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073883.t1 MTR_5g025270 96.907 582 16 2 1 581 1 581 0.0 1155
MS.gene073883.t1 MTR_5g025230 82.646 582 96 4 1 581 1 578 0.0 986
MS.gene073883.t1 MTR_5g025250 81.787 582 102 3 1 581 1 579 0.0 977
MS.gene073883.t1 MTR_2g070460 36.644 584 333 15 24 577 32 608 4.38e-124 379
MS.gene073883.t1 MTR_8g037315 38.716 514 285 9 84 577 33 536 5.29e-113 347
MS.gene073883.t1 MTR_8g037275 37.475 499 283 9 100 577 81 571 4.27e-106 331
MS.gene073883.t1 MTR_8g037290 37.275 499 284 9 100 577 81 571 9.68e-105 327
MS.gene073883.t1 MTR_8g037310 36.434 516 299 10 83 577 64 571 1.12e-103 325
MS.gene073883.t1 MTR_3g110195 28.772 570 329 20 49 570 38 578 8.65e-57 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073883.t1 AT4G19170 68.214 560 150 6 29 578 54 595 0.0 793
MS.gene073883.t1 AT3G63520 40.077 519 281 8 83 580 28 537 7.80e-123 373
MS.gene073883.t1 AT1G30100 40.612 490 279 9 92 575 102 585 1.80e-120 369
MS.gene073883.t1 AT3G14440 40.121 496 282 10 92 580 112 599 1.03e-117 362
MS.gene073883.t1 AT4G18350 36.684 567 325 10 29 576 29 580 1.09e-117 361
MS.gene073883.t1 AT1G78390 38.664 494 283 11 96 581 176 657 1.35e-112 350
MS.gene073883.t1 AT3G24220 35.000 580 335 14 33 577 2 574 1.24e-103 325
MS.gene073883.t1 AT2G44990 25.044 567 300 28 112 572 75 622 4.44e-12 69.3
MS.gene073883.t1 AT2G44990 25.044 567 300 28 112 572 71 618 4.91e-12 69.3

Find 141 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCTCTTGACATGATTTC+TGG 0.188747 1.3:+26571592 MS.gene073883:CDS
GTTATGGGTGGTGGTGGTGG+TGG 0.196963 1.3:-26570720 None:intergenic
ATTTGCATCAAAACGGAAAT+AGG 0.215073 1.3:-26571458 None:intergenic
CTTGTTATTATGATGGGTTT+TGG 0.236999 1.3:-26570560 None:intergenic
AATCCAATGCCGAAGATTTC+AGG 0.254183 1.3:+26571979 MS.gene073883:CDS
ACACAATGTGAAATCATTAA+AGG 0.269615 1.3:+26570902 MS.gene073883:CDS
TTTGATGGATGAGATGTTAA+AGG 0.272209 1.3:-26570612 None:intergenic
CAGCACGAAACCTGGATTTC+GGG 0.277585 1.3:+26571899 MS.gene073883:CDS
GTGAAGATAAATATTAAAAC+AGG 0.290009 1.3:+26571853 MS.gene073883:CDS
CTGGATTTCGGGGTGATAAA+TGG 0.290879 1.3:+26571910 MS.gene073883:CDS
TCAGCACGAAACCTGGATTT+CGG 0.304408 1.3:+26571898 MS.gene073883:CDS
AATCTTGACGGCCGATTGTT+TGG 0.307017 1.3:-26571333 None:intergenic
TGTCTGGGATTGTGATGTTT+GGG 0.310552 1.3:-26570648 None:intergenic
TCCAGGTTTCGTGCTGATAA+TGG 0.334748 1.3:-26571892 None:intergenic
TACAATCCTTCTAACGGAAT+TGG 0.339439 1.3:+26571211 MS.gene073883:CDS
ACCGCAGCACGTGTCATATC+TGG 0.342484 1.3:+26571184 MS.gene073883:CDS
GCTAAACCAATTCCGTTAGA+AGG 0.348673 1.3:-26571217 None:intergenic
GAGGTTATGGGTGGTGGTGG+TGG 0.353426 1.3:-26570723 None:intergenic
AACACAAGTTTGGCTTTGTT+TGG 0.358095 1.3:+26571241 MS.gene073883:CDS
GTGTCTGGGATTGTGATGTT+TGG 0.362352 1.3:-26570649 None:intergenic
TTGCTTACTTGTTATTATGA+TGG 0.362595 1.3:-26570567 None:intergenic
AGGTTTGTTTATGCGGCAAT+TGG 0.386277 1.3:+26571955 MS.gene073883:CDS
TTTGAGGTTATGGGTGGTGG+TGG 0.388850 1.3:-26570726 None:intergenic
TGGTTTAGCCAACACAAGTT+TGG 0.393154 1.3:+26571231 MS.gene073883:CDS
TGTTAAACATAACGATGTTC+CGG 0.404869 1.3:+26571483 MS.gene073883:CDS
TTGAAACCAGAAAACACGTT+TGG 0.405859 1.3:-26571127 None:intergenic
TTGATGGATGAGATGTTAAA+GGG 0.406557 1.3:-26570611 None:intergenic
GGTGTAAGCTTGATTTCATA+AGG 0.411021 1.3:-26571298 None:intergenic
GAAGTTGGATGTAGATTGTA+TGG 0.425213 1.3:+26572033 MS.gene073883:CDS
TGCTTACTTGTTATTATGAT+GGG 0.425997 1.3:-26570566 None:intergenic
GGGAGTGATGATGGTGTTTG+TGG 0.434132 1.3:-26570752 None:intergenic
CGTGGAAGAAACTGTGGGTT+TGG 0.439102 1.3:-26570968 None:intergenic
ACCATTATCAGCACGAAACC+TGG 0.440073 1.3:+26571891 MS.gene073883:CDS
ACACTTCCACCGTCACTTAA+CGG 0.447215 1.3:+26570926 MS.gene073883:CDS
CCTAAAATTGACGGCGACAC+TGG 0.451020 1.3:+26571391 MS.gene073883:CDS
AAACCATACGGCACCCTCCT+TGG 0.455270 1.3:-26572225 None:intergenic
TGAAACCAGAAAACACGTTT+GGG 0.456713 1.3:-26571126 None:intergenic
ATTTCTGGTGGTTCTCCAGT+AGG 0.459625 1.3:+26571607 MS.gene073883:CDS
TTGTATGGAGAGGATTGTTA+TGG 0.460237 1.3:+26572048 MS.gene073883:CDS
AACGGCGCTTACATAAGAAA+TGG 0.460728 1.3:+26570944 MS.gene073883:CDS
CATTTATCACCCCGAAATCC+AGG 0.462433 1.3:-26571909 None:intergenic
CCGATCCATCAAAAGTTTCA+AGG 0.463927 1.3:+26571632 MS.gene073883:CDS
ACTCCTGAAATCTTCGGCAT+TGG 0.467844 1.3:-26571982 None:intergenic
TAACACCATTTGCATCAAAA+CGG 0.472715 1.3:-26571465 None:intergenic
CGCGATCAATGCGTGGGATG+GGG 0.473648 1.3:+26571732 MS.gene073883:CDS
ACGCGATCAATGCGTGGGAT+GGG 0.477959 1.3:+26571731 MS.gene073883:CDS
TGCTCGATGGAGAGAACATT+CGG 0.481558 1.3:-26571787 None:intergenic
GTGACGAGTCGAAGATGAAA+TGG 0.483688 1.3:+26571680 MS.gene073883:CDS
TTATGTGCATGATGAGAAGA+AGG 0.484903 1.3:+26572134 MS.gene073883:CDS
GTTTGCCGTTAAAATCTTGA+CGG 0.485908 1.3:-26571345 None:intergenic
CACGCGATCAATGCGTGGGA+TGG 0.488713 1.3:+26571730 MS.gene073883:CDS
CCTCTTGACATGATTTCTGG+TGG 0.488783 1.3:+26571595 MS.gene073883:CDS
ATGAAATGGTTCGATGTGCC+AGG 0.489596 1.3:+26571694 MS.gene073883:CDS
GTCGCCGGAGTTTGAGATTG+TGG 0.494521 1.3:+26572188 MS.gene073883:CDS
ATTGTTTGGATATCACCGTT+TGG 0.495988 1.3:-26571319 None:intergenic
AACGGTGATATCCAAACAAT+CGG 0.496479 1.3:+26571322 MS.gene073883:CDS
AAGGGAGGGATAGAAGTTGT+TGG 0.498248 1.3:-26570593 None:intergenic
AAAACACGTTTGGGATAAGT+TGG 0.498794 1.3:-26571117 None:intergenic
TCCCTACGACACCGACAACT+TGG 0.500531 1.3:-26572280 None:intergenic
TTAATGATTTCACATTGTGT+TGG 0.501774 1.3:-26570899 None:intergenic
TTTGATGGATCGGAACCTAC+TGG 0.501938 1.3:-26571622 None:intergenic
TTCACCACTCCTGAAATCTT+CGG 0.504096 1.3:-26571988 None:intergenic
TACAAAATCGAAAACGAAGC+TGG 0.505480 1.3:+26571091 MS.gene073883:CDS
AGTAATGCTGGGAGTGATGA+TGG 0.506662 1.3:-26570761 None:intergenic
AAAGAATAGGTTTGTTTATG+CGG 0.507283 1.3:+26571948 MS.gene073883:CDS
AAAGGAGGATGGTGAAGAAG+AGG 0.507917 1.3:+26572092 MS.gene073883:CDS
GGTCTTGTCATGGAGAAAAC+CGG 0.510037 1.3:-26571502 None:intergenic
GGTTTGTTTATGCGGCAATT+GGG 0.511453 1.3:+26571956 MS.gene073883:CDS
ACTGCTCATCCTAAAATTGA+CGG 0.512038 1.3:+26571382 MS.gene073883:CDS
ATGATTTCACATTGTGTTGG+AGG 0.513822 1.3:-26570896 None:intergenic
GGAGTTTGAGATTGTGGCGG+AGG 0.515266 1.3:+26572194 MS.gene073883:CDS
TGGATGAGATGTTAAAGGGA+GGG 0.519687 1.3:-26570607 None:intergenic
CACCAAGTTGTCGGTGTCGT+AGG 0.521647 1.3:+26572278 MS.gene073883:CDS
CACGCCATTACAATCTCAAA+CGG 0.522637 1.3:+26571028 MS.gene073883:CDS
GCGAAATCATGAAGAAAAGA+AGG 0.525570 1.3:-26571523 None:intergenic
ACCAAGTTGTCGGTGTCGTA+GGG 0.528287 1.3:+26572279 MS.gene073883:CDS
CCATCAAAAGTTTCAAGGAT+CGG 0.531863 1.3:+26571637 MS.gene073883:CDS
GGTGATCGATGCGAAGTCGC+CGG 0.538159 1.3:+26572173 MS.gene073883:CDS
TGATTTCACATTGTGTTGGA+GGG 0.543631 1.3:-26570895 None:intergenic
GTGTTGGAGGGAGTTCGTCT+AGG 0.545453 1.3:-26570883 None:intergenic
TCATGCACGCGATCAATGCG+TGG 0.547541 1.3:+26571725 MS.gene073883:CDS
GAAATCAAGCTTACACCAAA+CGG 0.548084 1.3:+26571304 MS.gene073883:CDS
GTGTTTACGGATATTCAGCT+TGG 0.550330 1.3:+26571565 MS.gene073883:CDS
ATTTGTAAGTTTGAACGTAA+CGG 0.551232 1.3:-26571069 None:intergenic
TATGACACGTGCTGCGGTGA+CGG 0.553634 1.3:-26571179 None:intergenic
GTGATAAATGGTGATTACAT+GGG 0.557337 1.3:+26571922 MS.gene073883:CDS
GTCTGGGATTGTGATGTTTG+GGG 0.559818 1.3:-26570647 None:intergenic
GGAGGGAGTTCGTCTAGGAC+TGG 0.561664 1.3:-26570878 None:intergenic
TAAGCTTGATTTCATAAGGA+AGG 0.561782 1.3:-26571294 None:intergenic
ATGGATGAGATGTTAAAGGG+AGG 0.562849 1.3:-26570608 None:intergenic
TACCACCTCTTCGACGGTGA+TGG 0.565615 1.3:+26570998 MS.gene073883:CDS
TATGGAGAGGATTGTTATGG+TGG 0.566167 1.3:+26572051 MS.gene073883:CDS
ACATGTCTTGGATCTACAGA+TGG 0.569645 1.3:-26570836 None:intergenic
GGAGGGATAGAAGTTGTTGG+TGG 0.570969 1.3:-26570590 None:intergenic
TGCCATCACCGTCGAAGAGG+TGG 0.571502 1.3:-26571000 None:intergenic
GAGTGACATCACCAAGTTGT+CGG 0.571610 1.3:+26572269 MS.gene073883:CDS
TCACCGTCGAAGAGGTGGTA+AGG 0.575068 1.3:-26570995 None:intergenic
GGTGATAAATGGTGATTACA+TGG 0.575102 1.3:+26571921 MS.gene073883:CDS
TCCGCCACAATCTCAAACTC+CGG 0.575111 1.3:-26572192 None:intergenic
CTTATAGCTTCTGCTGCACG+TGG 0.575305 1.3:+26571154 MS.gene073883:CDS
AGGATGAGCAGTCATACTCA+TGG 0.575328 1.3:-26571371 None:intergenic
AACGTAACGGCTACAGAGTG+TGG 0.575577 1.3:-26571056 None:intergenic
GCGTGCATGATATTAAATCC+TGG 0.576415 1.3:-26571712 None:intergenic
TATGTGCATGATGAGAAGAA+GGG 0.578787 1.3:+26572135 MS.gene073883:CDS
AAGAAAAGAAGGTCTTGTCA+TGG 0.578816 1.3:-26571512 None:intergenic
AAACAAAGCCAAACTTGTGT+TGG 0.580683 1.3:-26571239 None:intergenic
TCTCTCCATCGTATGCTCGA+TGG 0.582461 1.3:-26571800 None:intergenic
AATAATCCATGAAAACCATA+CGG 0.583712 1.3:-26572237 None:intergenic
ATGTAAGCGCCGTTAAGTGA+CGG 0.584811 1.3:-26570935 None:intergenic
AATGTGTTGAGTAGTAATGC+TGG 0.590033 1.3:-26570773 None:intergenic
CCACCAGAAATCATGTCAAG+AGG 0.590568 1.3:-26571595 None:intergenic
GATGGTGAAGAAGAGGATGA+TGG 0.592671 1.3:+26572099 MS.gene073883:CDS
CGGAGGTGAAGTTGCCAAGG+AGG 0.593842 1.3:+26572211 MS.gene073883:CDS
GTGGGATGGGGAAGATGATG+AGG 0.595645 1.3:+26571744 MS.gene073883:CDS
GGAGGTGAAGTTGCCAAGGA+GGG 0.600925 1.3:+26572212 MS.gene073883:CDS
GGACAATACAATCCTTCTAA+CGG 0.602074 1.3:+26571205 MS.gene073883:CDS
TTGCCAAGGAGGGTGCCGTA+TGG 0.604907 1.3:+26572222 MS.gene073883:CDS
ATGAGAAGAAGGGAGAGTCA+AGG 0.607088 1.3:+26572145 MS.gene073883:CDS
GTGTTGAAAGGTGAGGAAGT+TGG 0.610000 1.3:+26572018 MS.gene073883:CDS
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 1.3:+26572208 MS.gene073883:CDS
GTGAAGATAGATGTGTTGAA+AGG 0.624379 1.3:+26572006 MS.gene073883:CDS
GGTCCACGTGGAAGAAACTG+TGG 0.628559 1.3:-26570974 None:intergenic
GCATGCCATCACCGTCGAAG+AGG 0.632272 1.3:-26571003 None:intergenic
GATAGATGTGTTGAAAGGTG+AGG 0.636429 1.3:+26572011 MS.gene073883:CDS
CATGCACGCGATCAATGCGT+GGG 0.637360 1.3:+26571726 MS.gene073883:CDS
GGACCTTACCACCTCTTCGA+CGG 0.645380 1.3:+26570992 MS.gene073883:CDS
TGGATGTAGATTGTATGGAG+AGG 0.648715 1.3:+26572038 MS.gene073883:CDS
AACCCACAGTTTCTTCCACG+TGG 0.651198 1.3:+26570971 MS.gene073883:CDS
GCCGGAGTTTGAGATTGTGG+CGG 0.652926 1.3:+26572191 MS.gene073883:CDS
TGAAGATAAATATTAAAACA+GGG 0.655068 1.3:+26571854 MS.gene073883:CDS
TGATAAATGGTGATTACATG+GGG 0.658268 1.3:+26571923 MS.gene073883:CDS
AGCACGAAACCTGGATTTCG+GGG 0.660216 1.3:+26571900 MS.gene073883:CDS
AATGCCGAAGATTTCAGGAG+TGG 0.663954 1.3:+26571984 MS.gene073883:CDS
TCTCTCCATCGAGCATACGA+TGG 0.671121 1.3:+26571795 MS.gene073883:CDS
TCCAGATATGACACGTGCTG+CGG 0.676934 1.3:-26571185 None:intergenic
ATGTGTTGAGTAGTAATGCT+GGG 0.681095 1.3:-26570772 None:intergenic
GTCCACGTGGAAGAAACTGT+GGG 0.688234 1.3:-26570973 None:intergenic
TAAGCGCCGTTAAGTGACGG+TGG 0.696353 1.3:-26570932 None:intergenic
ATGGTGGCATAGGACCGTAA+CGG 0.707951 1.3:-26571429 None:intergenic
GACTCGTCACTAGCATAACG+AGG 0.742544 1.3:-26571667 None:intergenic
AAGAGGTGGTAAGGTCCACG+TGG 0.744047 1.3:-26570986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGATAAATATTAAAACA+GGG + chr1.3:26571854-26571873 MS.gene073883:CDS 15.0%
!! GTGAAGATAAATATTAAAAC+AGG + chr1.3:26571853-26571872 MS.gene073883:CDS 20.0%
! AAACGGAAATAGGTTAAAAA+TGG - chr1.3:26571451-26571470 None:intergenic 25.0%
! AATAATCCATGAAAACCATA+CGG - chr1.3:26572240-26572259 None:intergenic 25.0%
! ACACAATGTGAAATCATTAA+AGG + chr1.3:26570902-26570921 MS.gene073883:CDS 25.0%
! ATTTGTAAGTTTGAACGTAA+CGG - chr1.3:26571072-26571091 None:intergenic 25.0%
! TTAATGATTTCACATTGTGT+TGG - chr1.3:26570902-26570921 None:intergenic 25.0%
!! AAAGAATAGGTTTGTTTATG+CGG + chr1.3:26571948-26571967 MS.gene073883:CDS 25.0%
!! TAAAAAGTATGCTGTGTTTA+CGG + chr1.3:26571552-26571571 MS.gene073883:CDS 25.0%
!!! TGCTTACTTGTTATTATGAT+GGG - chr1.3:26570569-26570588 None:intergenic 25.0%
!!! TTGCTTACTTGTTATTATGA+TGG - chr1.3:26570570-26570589 None:intergenic 25.0%
!!! TTGTTATTATGATGGGTTTT+GGG - chr1.3:26570562-26570581 None:intergenic 25.0%
!!! TTTTCATGGATTATTTGTGA+AGG + chr1.3:26572245-26572264 MS.gene073883:CDS 25.0%
ATTACATGGGGAAAAAGAAT+AGG + chr1.3:26571935-26571954 MS.gene073883:CDS 30.0%
ATTTGCATCAAAACGGAAAT+AGG - chr1.3:26571461-26571480 None:intergenic 30.0%
GTGATAAATGGTGATTACAT+GGG + chr1.3:26571922-26571941 MS.gene073883:CDS 30.0%
TAACACCATTTGCATCAAAA+CGG - chr1.3:26571468-26571487 None:intergenic 30.0%
TAAGCTTGATTTCATAAGGA+AGG - chr1.3:26571297-26571316 None:intergenic 30.0%
TGATAAATGGTGATTACATG+GGG + chr1.3:26571923-26571942 MS.gene073883:CDS 30.0%
TGTTAAACATAACGATGTTC+CGG + chr1.3:26571483-26571502 MS.gene073883:CDS 30.0%
! GGTAACAAACTTTTTGCTTT+AGG + chr1.3:26571262-26571281 MS.gene073883:CDS 30.0%
! TTGATGGATGAGATGTTAAA+GGG - chr1.3:26570614-26570633 None:intergenic 30.0%
! TTTGATGGATGAGATGTTAA+AGG - chr1.3:26570615-26570634 None:intergenic 30.0%
!! CACAGCATACTTTTTAGTAA+TGG - chr1.3:26571548-26571567 None:intergenic 30.0%
!! TATTTCCGTTTTGATGCAAA+TGG + chr1.3:26571460-26571479 MS.gene073883:CDS 30.0%
!! TTTTCCGTTTGAGATTGTAA+TGG - chr1.3:26571035-26571054 None:intergenic 30.0%
!!! CTTGTTATTATGATGGGTTT+TGG - chr1.3:26570563-26570582 None:intergenic 30.0%
!!! TTGTGGTTTTTTGAGGTTAT+GGG - chr1.3:26570738-26570757 None:intergenic 30.0%
!!! TTTGTGGTTTTTTGAGGTTA+TGG - chr1.3:26570739-26570758 None:intergenic 30.0%
!!! TTTTGAGACAAAACATGTCT+TGG - chr1.3:26570851-26570870 None:intergenic 30.0%
AAACAAAGCCAAACTTGTGT+TGG - chr1.3:26571242-26571261 None:intergenic 35.0%
AACGGTGATATCCAAACAAT+CGG + chr1.3:26571322-26571341 MS.gene073883:CDS 35.0%
AATCCTCTTGACATGATTTC+TGG + chr1.3:26571592-26571611 MS.gene073883:CDS 35.0%
AATGTGTTGAGTAGTAATGC+TGG - chr1.3:26570776-26570795 None:intergenic 35.0%
ACTGCTCATCCTAAAATTGA+CGG + chr1.3:26571382-26571401 MS.gene073883:CDS 35.0%
ATGATTTCACATTGTGTTGG+AGG - chr1.3:26570899-26570918 None:intergenic 35.0%
ATGTGTTGAGTAGTAATGCT+GGG - chr1.3:26570775-26570794 None:intergenic 35.0%
ATTGTTTGGATATCACCGTT+TGG - chr1.3:26571322-26571341 None:intergenic 35.0%
CCATCAAAAGTTTCAAGGAT+CGG + chr1.3:26571637-26571656 MS.gene073883:CDS 35.0%
CGGAAATAGGTTAAAAATGG+TGG - chr1.3:26571448-26571467 None:intergenic 35.0%
GAAATCAAGCTTACACCAAA+CGG + chr1.3:26571304-26571323 MS.gene073883:CDS 35.0%
GAAGTTGGATGTAGATTGTA+TGG + chr1.3:26572033-26572052 MS.gene073883:CDS 35.0%
GCGAAATCATGAAGAAAAGA+AGG - chr1.3:26571526-26571545 None:intergenic 35.0%
GGACAATACAATCCTTCTAA+CGG + chr1.3:26571205-26571224 MS.gene073883:CDS 35.0%
GGTGATAAATGGTGATTACA+TGG + chr1.3:26571921-26571940 MS.gene073883:CDS 35.0%
GGTGTAAGCTTGATTTCATA+AGG - chr1.3:26571301-26571320 None:intergenic 35.0%
GTGAAGATAGATGTGTTGAA+AGG + chr1.3:26572006-26572025 MS.gene073883:CDS 35.0%
GTTTGCCGTTAAAATCTTGA+CGG - chr1.3:26571348-26571367 None:intergenic 35.0%
TACAAAATCGAAAACGAAGC+TGG + chr1.3:26571091-26571110 MS.gene073883:CDS 35.0%
TACAATCCTTCTAACGGAAT+TGG + chr1.3:26571211-26571230 MS.gene073883:CDS 35.0%
TAGGTTAAAAATGGTGGCAT+AGG - chr1.3:26571442-26571461 None:intergenic 35.0%
TATGTGCATGATGAGAAGAA+GGG + chr1.3:26572135-26572154 MS.gene073883:CDS 35.0%
TGAAACCAGAAAACACGTTT+GGG - chr1.3:26571129-26571148 None:intergenic 35.0%
TGATTTCACATTGTGTTGGA+GGG - chr1.3:26570898-26570917 None:intergenic 35.0%
TTATGTGCATGATGAGAAGA+AGG + chr1.3:26572134-26572153 MS.gene073883:CDS 35.0%
TTGAAACCAGAAAACACGTT+TGG - chr1.3:26571130-26571149 None:intergenic 35.0%
TTGTATGGAGAGGATTGTTA+TGG + chr1.3:26572048-26572067 MS.gene073883:CDS 35.0%
! AAAACACGTTTGGGATAAGT+TGG - chr1.3:26571120-26571139 None:intergenic 35.0%
! AAGAAAAGAAGGTCTTGTCA+TGG - chr1.3:26571515-26571534 None:intergenic 35.0%
! GAAACTTTTGCTTTCCGTTA+CGG + chr1.3:26571415-26571434 MS.gene073883:CDS 35.0%
!! AACACAAGTTTGGCTTTGTT+TGG + chr1.3:26571241-26571260 MS.gene073883:CDS 35.0%
!! CCTTGAAACTTTTGATGGAT+CGG - chr1.3:26571635-26571654 None:intergenic 35.0%
!! TGATGTTTGGGGTTTTTCTT+TGG - chr1.3:26570639-26570658 None:intergenic 35.0%
!! TTTTATTGGTGGGTCTATGA+AGG - chr1.3:26570816-26570835 None:intergenic 35.0%
!!! ATGGTGTTTGTGGTTTTTTG+AGG - chr1.3:26570745-26570764 None:intergenic 35.0%
!!! CTACAGATGGTTTTATTGGT+GGG - chr1.3:26570826-26570845 None:intergenic 35.0%
!!! GGATCTACAGATGGTTTTAT+TGG - chr1.3:26570830-26570849 None:intergenic 35.0%
!!! GGGTTTTTCTTTGGTTTTGA+TGG - chr1.3:26570630-26570649 None:intergenic 35.0%
!!! TCTACAGATGGTTTTATTGG+TGG - chr1.3:26570827-26570846 None:intergenic 35.0%
AACGGCGCTTACATAAGAAA+TGG + chr1.3:26570944-26570963 MS.gene073883:CDS 40.0%
AATCCAATGCCGAAGATTTC+AGG + chr1.3:26571979-26571998 MS.gene073883:CDS 40.0%
ACATGTCTTGGATCTACAGA+TGG - chr1.3:26570839-26570858 None:intergenic 40.0%
ATGGATGAGATGTTAAAGGG+AGG - chr1.3:26570611-26570630 None:intergenic 40.0%
CACGCCATTACAATCTCAAA+CGG + chr1.3:26571028-26571047 MS.gene073883:CDS 40.0%
CCGATCCATCAAAAGTTTCA+AGG + chr1.3:26571632-26571651 MS.gene073883:CDS 40.0%
GATAGATGTGTTGAAAGGTG+AGG + chr1.3:26572011-26572030 MS.gene073883:CDS 40.0%
GCGTGCATGATATTAAATCC+TGG - chr1.3:26571715-26571734 None:intergenic 40.0%
GCTAAACCAATTCCGTTAGA+AGG - chr1.3:26571220-26571239 None:intergenic 40.0%
GTGTTTACGGATATTCAGCT+TGG + chr1.3:26571565-26571584 MS.gene073883:CDS 40.0%
TATGGAGAGGATTGTTATGG+TGG + chr1.3:26572051-26572070 MS.gene073883:CDS 40.0%
TGGATGAGATGTTAAAGGGA+GGG - chr1.3:26570610-26570629 None:intergenic 40.0%
TGGATGTAGATTGTATGGAG+AGG + chr1.3:26572038-26572057 MS.gene073883:CDS 40.0%
TGGTTTAGCCAACACAAGTT+TGG + chr1.3:26571231-26571250 MS.gene073883:CDS 40.0%
TTCACCACTCCTGAAATCTT+CGG - chr1.3:26571991-26572010 None:intergenic 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG + chr1.3:26571955-26571974 MS.gene073883:CDS 40.0%
! ATCGGCCGTCAAGATTTTAA+CGG + chr1.3:26571340-26571359 MS.gene073883:CDS 40.0%
! CCGATCCTTGAAACTTTTGA+TGG - chr1.3:26571640-26571659 None:intergenic 40.0%
! CTTATCCCAAACGTGTTTTC+TGG + chr1.3:26571121-26571140 MS.gene073883:CDS 40.0%
! GGTGTAGGAAGAGTTTTTGT+GGG - chr1.3:26570698-26570717 None:intergenic 40.0%
! GGTTTGTTTATGCGGCAATT+GGG + chr1.3:26571956-26571975 MS.gene073883:CDS 40.0%
! GTGTAGGAAGAGTTTTTGTG+GGG - chr1.3:26570697-26570716 None:intergenic 40.0%
! TGTAGGAAGAGTTTTTGTGG+GGG - chr1.3:26570696-26570715 None:intergenic 40.0%
! TGTCTGGGATTGTGATGTTT+GGG - chr1.3:26570651-26570670 None:intergenic 40.0%
!!! TGGTTTTTTGAGGTTATGGG+TGG - chr1.3:26570735-26570754 None:intergenic 40.0%
!!! TTTTTTGAGGTTATGGGTGG+TGG - chr1.3:26570732-26570751 None:intergenic 40.0%
AAAGGAGGATGGTGAAGAAG+AGG + chr1.3:26572092-26572111 MS.gene073883:CDS 45.0%
AAGGGAGGGATAGAAGTTGT+TGG - chr1.3:26570596-26570615 None:intergenic 45.0%
AATCTTGACGGCCGATTGTT+TGG - chr1.3:26571336-26571355 None:intergenic 45.0%
AATGCCGAAGATTTCAGGAG+TGG + chr1.3:26571984-26572003 MS.gene073883:CDS 45.0%
ACACTTCCACCGTCACTTAA+CGG + chr1.3:26570926-26570945 MS.gene073883:CDS 45.0%
ACCATTATCAGCACGAAACC+TGG + chr1.3:26571891-26571910 MS.gene073883:CDS 45.0%
ACTCCTGAAATCTTCGGCAT+TGG - chr1.3:26571985-26572004 None:intergenic 45.0%
AGGATGAGCAGTCATACTCA+TGG - chr1.3:26571374-26571393 None:intergenic 45.0%
AGTAATGCTGGGAGTGATGA+TGG - chr1.3:26570764-26570783 None:intergenic 45.0%
ATGAAATGGTTCGATGTGCC+AGG + chr1.3:26571694-26571713 MS.gene073883:CDS 45.0%
ATGAGAAGAAGGGAGAGTCA+AGG + chr1.3:26572145-26572164 MS.gene073883:CDS 45.0%
CATTTATCACCCCGAAATCC+AGG - chr1.3:26571912-26571931 None:intergenic 45.0%
CCACCAGAAATCATGTCAAG+AGG - chr1.3:26571598-26571617 None:intergenic 45.0%
CTGGATTTCGGGGTGATAAA+TGG + chr1.3:26571910-26571929 MS.gene073883:CDS 45.0%
GAGTGACATCACCAAGTTGT+CGG + chr1.3:26572269-26572288 MS.gene073883:CDS 45.0%
GATGGTGAAGAAGAGGATGA+TGG + chr1.3:26572099-26572118 MS.gene073883:CDS 45.0%
GTGACGAGTCGAAGATGAAA+TGG + chr1.3:26571680-26571699 MS.gene073883:CDS 45.0%
GTGTTGAAAGGTGAGGAAGT+TGG + chr1.3:26572018-26572037 MS.gene073883:CDS 45.0%
TCAGCACGAAACCTGGATTT+CGG + chr1.3:26571898-26571917 MS.gene073883:CDS 45.0%
TCCTCCTTTGCCACGAAAAA+CGG - chr1.3:26572081-26572100 None:intergenic 45.0%
TGCTCGATGGAGAGAACATT+CGG - chr1.3:26571790-26571809 None:intergenic 45.0%
! ATGTAAGCGCCGTTAAGTGA+CGG - chr1.3:26570938-26570957 None:intergenic 45.0%
! CCTCTTGACATGATTTCTGG+TGG + chr1.3:26571595-26571614 MS.gene073883:CDS 45.0%
! GAAGGGAGAGTCAAGGTTTT+TGG + chr1.3:26572152-26572171 MS.gene073883:CDS 45.0%
! GGGTGTAGGAAGAGTTTTTG+TGG - chr1.3:26570699-26570718 None:intergenic 45.0%
! GGTCTTGTCATGGAGAAAAC+CGG - chr1.3:26571505-26571524 None:intergenic 45.0%
! GTAGGAAGAGTTTTTGTGGG+GGG - chr1.3:26570695-26570714 None:intergenic 45.0%
! GTCTGGGATTGTGATGTTTG+GGG - chr1.3:26570650-26570669 None:intergenic 45.0%
! GTGTCTGGGATTGTGATGTT+TGG - chr1.3:26570652-26570671 None:intergenic 45.0%
! TCCAGGTTTCGTGCTGATAA+TGG - chr1.3:26571895-26571914 None:intergenic 45.0%
! TTTGATGGATCGGAACCTAC+TGG - chr1.3:26571625-26571644 None:intergenic 45.0%
! TTTTTCGTGGCAAAGGAGGA+TGG + chr1.3:26572081-26572100 MS.gene073883:CDS 45.0%
!! ATTTCTGGTGGTTCTCCAGT+AGG + chr1.3:26571607-26571626 MS.gene073883:CDS 45.0%
!!! GGTGGTGGTTTTTAGTGTCT+GGG - chr1.3:26570666-26570685 None:intergenic 45.0%
!!! TGGTGGTGGTTTTTAGTGTC+TGG - chr1.3:26570667-26570686 None:intergenic 45.0%
AACCCACAGTTTCTTCCACG+TGG + chr1.3:26570971-26570990 MS.gene073883:CDS 50.0%
AACGTAACGGCTACAGAGTG+TGG - chr1.3:26571059-26571078 None:intergenic 50.0%
AGCACGAAACCTGGATTTCG+GGG + chr1.3:26571900-26571919 MS.gene073883:CDS 50.0%
ATGGTGGCATAGGACCGTAA+CGG - chr1.3:26571432-26571451 None:intergenic 50.0%
CAGCACGAAACCTGGATTTC+GGG + chr1.3:26571899-26571918 MS.gene073883:CDS 50.0%
CCTAAAATTGACGGCGACAC+TGG + chr1.3:26571391-26571410 MS.gene073883:CDS 50.0%
CGTGGAAGAAACTGTGGGTT+TGG - chr1.3:26570971-26570990 None:intergenic 50.0%
CTTATAGCTTCTGCTGCACG+TGG + chr1.3:26571154-26571173 MS.gene073883:CDS 50.0%
GACTCGTCACTAGCATAACG+AGG - chr1.3:26571670-26571689 None:intergenic 50.0%
GGAGGGATAGAAGTTGTTGG+TGG - chr1.3:26570593-26570612 None:intergenic 50.0%
GTCCACGTGGAAGAAACTGT+GGG - chr1.3:26570976-26570995 None:intergenic 50.0%
TCCAGATATGACACGTGCTG+CGG - chr1.3:26571188-26571207 None:intergenic 50.0%
TCCGCCACAATCTCAAACTC+CGG - chr1.3:26572195-26572214 None:intergenic 50.0%
TCTCTCCATCGAGCATACGA+TGG + chr1.3:26571795-26571814 MS.gene073883:CDS 50.0%
TCTCTCCATCGTATGCTCGA+TGG - chr1.3:26571803-26571822 None:intergenic 50.0%
! CCAGTGTCGCCGTCAATTTT+AGG - chr1.3:26571394-26571413 None:intergenic 50.0%
! TTTGAGGTTATGGGTGGTGG+TGG - chr1.3:26570729-26570748 None:intergenic 50.0%
!! AGTTTTTGTGGGGGGTGTAG+TGG - chr1.3:26570687-26570706 None:intergenic 50.0%
!! GGGAGTGATGATGGTGTTTG+TGG - chr1.3:26570755-26570774 None:intergenic 50.0%
!!! AGGGTGCCGTATGGTTTTCA+TGG + chr1.3:26572231-26572250 MS.gene073883:CDS 50.0%
!!! TGAGCCGTTTTTCGTGGCAA+AGG + chr1.3:26572074-26572093 MS.gene073883:CDS 50.0%
AAACCATACGGCACCCTCCT+TGG - chr1.3:26572228-26572247 None:intergenic 55.0%
AAGAGGTGGTAAGGTCCACG+TGG - chr1.3:26570989-26571008 None:intergenic 55.0%
ACCGCAGCACGTGTCATATC+TGG + chr1.3:26571184-26571203 MS.gene073883:CDS 55.0%
ACGCGATCAATGCGTGGGAT+GGG + chr1.3:26571731-26571750 MS.gene073883:CDS 55.0%
CATGCACGCGATCAATGCGT+GGG + chr1.3:26571726-26571745 MS.gene073883:CDS 55.0%
GGACCTTACCACCTCTTCGA+CGG + chr1.3:26570992-26571011 MS.gene073883:CDS 55.0%
GGAGGTGAAGTTGCCAAGGA+GGG + chr1.3:26572212-26572231 MS.gene073883:CDS 55.0%
GGTCCACGTGGAAGAAACTG+TGG - chr1.3:26570977-26570996 None:intergenic 55.0%
GTGGGATGGGGAAGATGATG+AGG + chr1.3:26571744-26571763 MS.gene073883:CDS 55.0%
GTGTTGGAGGGAGTTCGTCT+AGG - chr1.3:26570886-26570905 None:intergenic 55.0%
TACCACCTCTTCGACGGTGA+TGG + chr1.3:26570998-26571017 MS.gene073883:CDS 55.0%
TATGACACGTGCTGCGGTGA+CGG - chr1.3:26571182-26571201 None:intergenic 55.0%
TCACCGTCGAAGAGGTGGTA+AGG - chr1.3:26570998-26571017 None:intergenic 55.0%
TCATGCACGCGATCAATGCG+TGG + chr1.3:26571725-26571744 MS.gene073883:CDS 55.0%
! GCCGGAGTTTGAGATTGTGG+CGG + chr1.3:26572191-26572210 MS.gene073883:CDS 55.0%
! GGAGTTTGAGATTGTGGCGG+AGG + chr1.3:26572194-26572213 MS.gene073883:CDS 55.0%
! GTCGCCGGAGTTTGAGATTG+TGG + chr1.3:26572188-26572207 MS.gene073883:CDS 55.0%
! TAAGCGCCGTTAAGTGACGG+TGG - chr1.3:26570935-26570954 None:intergenic 55.0%
!! TTATGGGTGGTGGTGGTGGT+GGG - chr1.3:26570722-26570741 None:intergenic 55.0%
!! TTTTGTGGGGGGTGTAGTGG+TGG - chr1.3:26570684-26570703 None:intergenic 55.0%
!!! GCCGTTTTTCGTGGCAAAGG+AGG + chr1.3:26572077-26572096 MS.gene073883:CDS 55.0%
!!! TGGTGGTGAGCCGTTTTTCG+TGG + chr1.3:26572068-26572087 MS.gene073883:CDS 55.0%
CACGCGATCAATGCGTGGGA+TGG + chr1.3:26571730-26571749 MS.gene073883:CDS 60.0%
CGCGATCAATGCGTGGGATG+GGG + chr1.3:26571732-26571751 MS.gene073883:CDS 60.0%
CGGAGGTGAAGTTGCCAAGG+AGG + chr1.3:26572211-26572230 MS.gene073883:CDS 60.0%
GCATGCCATCACCGTCGAAG+AGG - chr1.3:26571006-26571025 None:intergenic 60.0%
GGTGATCGATGCGAAGTCGC+CGG + chr1.3:26572173-26572192 MS.gene073883:CDS 60.0%
TGCCATCACCGTCGAAGAGG+TGG - chr1.3:26571003-26571022 None:intergenic 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG + chr1.3:26572208-26572227 MS.gene073883:CDS 60.0%
! GGAGGGAGTTCGTCTAGGAC+TGG - chr1.3:26570881-26570900 None:intergenic 60.0%
!! GAGGTTATGGGTGGTGGTGG+TGG - chr1.3:26570726-26570745 None:intergenic 60.0%
!! GTTATGGGTGGTGGTGGTGG+TGG - chr1.3:26570723-26570742 None:intergenic 60.0%
!! TATGGGTGGTGGTGGTGGTG+GGG - chr1.3:26570721-26570740 None:intergenic 60.0%
!! TTGCCAAGGAGGGTGCCGTA+TGG + chr1.3:26572222-26572241 MS.gene073883:CDS 60.0%
! TGTGGGGGGTGTAGTGGTGG+TGG - chr1.3:26570681-26570700 None:intergenic 65.0%
!! ATGGGTGGTGGTGGTGGTGG+GGG - chr1.3:26570720-26570739 None:intergenic 65.0%
!! GTGGTGGTGGTGGGGGGTGT+AGG - chr1.3:26570713-26570732 None:intergenic 70.0%
!! TGGGTGGTGGTGGTGGTGGG+GGG - chr1.3:26570719-26570738 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 26570554 26572299 26570554 ID=MS.gene073883
chr1.3 mRNA 26570554 26572299 26570554 ID=MS.gene073883.t1;Parent=MS.gene073883
chr1.3 exon 26570554 26572299 26570554 ID=MS.gene073883.t1.exon1;Parent=MS.gene073883.t1
chr1.3 CDS 26570554 26572299 26570554 ID=cds.MS.gene073883.t1;Parent=MS.gene073883.t1
Gene Sequence

>MS.gene073883

ATGATCCCAAAACCCATCATAATAACAAGTAAGCAACCACCAACAACTTCTATCCCTCCCTTTAACATCTCATCCATCAAAACCAAAGAAAAACCCCAAACATCACAATCCCAGACACTAAAAACCACCACCACTACACCCCCCACAAAAACTCTTCCTACACCCCCCACCACCACCACCACCCATAACCTCAAAAAACCACAAACACCATCATCACTCCCAGCATTACTACTCAACACATTCGACGACATCATCAACACCTTCATAGACCCACCAATAAAACCATCTGTAGATCCAAGACATGTTTTGTCTCAAAACTTTGCACCAGTCCTAGACGAACTCCCTCCAACACAATGTGAAATCATTAAAGGCACACTTCCACCGTCACTTAACGGCGCTTACATAAGAAATGGACCAAACCCACAGTTTCTTCCACGTGGACCTTACCACCTCTTCGACGGTGATGGCATGCTTCACGCCATTACAATCTCAAACGGAAAAGCCACACTCTGTAGCCGTTACGTTCAAACTTACAAATACAAAATCGAAAACGAAGCTGGTTACCAACTTATCCCAAACGTGTTTTCTGGTTTCAACTCGCTTATAGCTTCTGCTGCACGTGGCTCCGTCACCGCAGCACGTGTCATATCTGGACAATACAATCCTTCTAACGGAATTGGTTTAGCCAACACAAGTTTGGCTTTGTTTGGTAACAAACTTTTTGCTTTAGGAGAATCAGACCTTCCTTATGAAATCAAGCTTACACCAAACGGTGATATCCAAACAATCGGCCGTCAAGATTTTAACGGCAAACTCTCCATGAGTATGACTGCTCATCCTAAAATTGACGGCGACACTGGTGAAACTTTTGCTTTCCGTTACGGTCCTATGCCACCATTTTTAACCTATTTCCGTTTTGATGCAAATGGTGTTAAACATAACGATGTTCCGGTTTTCTCCATGACAAGACCTTCTTTTCTTCATGATTTCGCCATTACTAAAAAGTATGCTGTGTTTACGGATATTCAGCTTGGTATGAATCCTCTTGACATGATTTCTGGTGGTTCTCCAGTAGGTTCCGATCCATCAAAAGTTTCAAGGATCGGAATTATACCTCGTTATGCTAGTGACGAGTCGAAGATGAAATGGTTCGATGTGCCAGGATTTAATATCATGCACGCGATCAATGCGTGGGATGGGGAAGATGATGAGGATACTGTGACACTAATTGCTCCGAATGTTCTCTCCATCGAGCATACGATGGAGAGACTTGAGCTTGTGCATGCAATGATTGAGAAAGTGAAGATAAATATTAAAACAGGGATAGTATCAAGACAACCATTATCAGCACGAAACCTGGATTTCGGGGTGATAAATGGTGATTACATGGGGAAAAAGAATAGGTTTGTTTATGCGGCAATTGGGAATCCAATGCCGAAGATTTCAGGAGTGGTGAAGATAGATGTGTTGAAAGGTGAGGAAGTTGGATGTAGATTGTATGGAGAGGATTGTTATGGTGGTGAGCCGTTTTTCGTGGCAAAGGAGGATGGTGAAGAAGAGGATGATGGTTATTTAGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCAAGGTTTTTGGTGATCGATGCGAAGTCGCCGGAGTTTGAGATTGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTATGGTTTTCATGGATTATTTGTGAAGGAGAGTGACATCACCAAGTTGTCGGTGTCGTAG

Protein sequence

>MS.gene073883.t1

MIPKPIIITSKQPPTTSIPPFNISSIKTKEKPQTSQSQTLKTTTTTPPTKTLPTPPTTTTTHNLKKPQTPSSLPALLLNTFDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCEIIKGTLPPSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVTAARVISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEIKLTPNGDIQTIGRQDFNGKLSMSMTAHPKIDGDTGETFAFRYGPMPPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDFAITKKYAVFTDIQLGMNPLDMISGGSPVGSDPSKVSRIGIIPRYASDESKMKWFDVPGFNIMHAINAWDGEDDEDTVTLIAPNVLSIEHTMERLELVHAMIEKVKINIKTGIVSRQPLSARNLDFGVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRLYGEDCYGGEPFFVAKEDGEEEDDGYLVSYVHDEKKGESRFLVIDAKSPEFEIVAEVKLPRRVPYGFHGLFVKESDITKLSVS