Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34554.t1 | XP_013443349.1 | 95.8 | 354 | 15 | 0 | 17 | 370 | 103 | 456 | 3.70E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34554.t1 | A0A072TIL7 | 95.8 | 354 | 15 | 0 | 17 | 370 | 103 | 456 | 2.7e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene34554 | 0.826403 | 2.77E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene34554 | 0.849685 | 2.76E-60 | -1.69E-46 |
| MS.gene049232 | MS.gene34554 | 0.887912 | 9.40E-73 | -1.69E-46 |
| MS.gene049285 | MS.gene34554 | 0.833075 | 6.57E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene34554 | 0.844207 | 8.72E-59 | -1.69E-46 |
| MS.gene049396 | MS.gene34554 | 0.812297 | 4.55E-51 | -1.69E-46 |
| MS.gene049600 | MS.gene34554 | 0.816595 | 5.10E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene34554 | 0.803305 | 3.71E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene34554 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene049656 | MS.gene34554 | 0.810768 | 9.78E-51 | -1.69E-46 |
| MS.gene049657 | MS.gene34554 | 0.826974 | 2.02E-54 | -1.69E-46 |
| MS.gene049865 | MS.gene34554 | 0.824373 | 8.36E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene34554 | 0.872544 | 2.93E-67 | -1.69E-46 |
| MS.gene050170 | MS.gene34554 | 0.883399 | 4.64E-71 | -1.69E-46 |
| MS.gene050216 | MS.gene34554 | 0.848987 | 4.32E-60 | -1.69E-46 |
| MS.gene050323 | MS.gene34554 | 0.865334 | 6.37E-65 | -1.69E-46 |
| MS.gene050381 | MS.gene34554 | -0.847136 | 1.40E-59 | -1.69E-46 |
| MS.gene050496 | MS.gene34554 | 0.858052 | 1.07E-62 | -1.69E-46 |
| MS.gene050499 | MS.gene34554 | 0.834874 | 2.33E-56 | -1.69E-46 |
| MS.gene050502 | MS.gene34554 | 0.866092 | 3.67E-65 | -1.69E-46 |
| MS.gene050504 | MS.gene34554 | 0.877908 | 4.31E-69 | -1.69E-46 |
| MS.gene050518 | MS.gene34554 | 0.853316 | 2.59E-61 | -1.69E-46 |
| MS.gene050520 | MS.gene34554 | 0.803687 | 3.10E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene34554 | 0.853748 | 1.95E-61 | -1.69E-46 |
| MS.gene050612 | MS.gene34554 | 0.844924 | 5.59E-59 | -1.69E-46 |
| MS.gene050647 | MS.gene34554 | -0.80625 | 9.01E-50 | -1.69E-46 |
| MS.gene050662 | MS.gene34554 | 0.80883 | 2.55E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene34554 | 0.818768 | 1.65E-52 | -1.69E-46 |
| MS.gene050697 | MS.gene34554 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene34554 | 0.810332 | 1.21E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene34554 | 0.819502 | 1.12E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene34554 | 0.825467 | 4.61E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene34554 | 0.825798 | 3.85E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene34554 | 0.885928 | 5.32E-72 | -1.69E-46 |
| MS.gene050871 | MS.gene34554 | 0.888468 | 5.75E-73 | -1.69E-46 |
| MS.gene050876 | MS.gene34554 | 0.818323 | 2.08E-52 | -1.69E-46 |
| MS.gene050883 | MS.gene34554 | -0.811512 | 6.75E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene34554 | 0.839653 | 1.39E-57 | -1.69E-46 |
| MS.gene050950 | MS.gene34554 | 0.813559 | 2.41E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene34554 | 0.844666 | 6.56E-59 | -1.69E-46 |
| MS.gene051127 | MS.gene34554 | -0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene05118 | MS.gene34554 | 0.831101 | 2.02E-55 | -1.69E-46 |
| MS.gene051268 | MS.gene34554 | 0.85622 | 3.73E-62 | -1.69E-46 |
| MS.gene05141 | MS.gene34554 | -0.805245 | 1.47E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene34554 | 0.866552 | 2.62E-65 | -1.69E-46 |
| MS.gene051551 | MS.gene34554 | 0.834583 | 2.76E-56 | -1.69E-46 |
| MS.gene051560 | MS.gene34554 | 0.817836 | 2.68E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene34554 | 0.812994 | 3.20E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene34554 | 0.813793 | 2.14E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene34554 | -0.819813 | 9.53E-53 | -1.69E-46 |
| MS.gene052066 | MS.gene34554 | 0.866076 | 3.71E-65 | -1.69E-46 |
| MS.gene052164 | MS.gene34554 | 0.87444 | 6.74E-68 | -1.69E-46 |
| MS.gene052482 | MS.gene34554 | 0.869005 | 4.28E-66 | -1.69E-46 |
| MS.gene052486 | MS.gene34554 | 0.875633 | 2.64E-68 | -1.69E-46 |
| MS.gene052503 | MS.gene34554 | 0.818766 | 1.65E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene34554 | 0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene34554 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene34554 | 0.82097 | 5.18E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene34554 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene34554 | 0.864591 | 1.09E-64 | -1.69E-46 |
| MS.gene053203 | MS.gene34554 | 0.844744 | 6.25E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene34554 | 0.829166 | 5.99E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene34554 | 0.838633 | 2.56E-57 | -1.69E-46 |
| MS.gene053420 | MS.gene34554 | -0.837193 | 6.00E-57 | -1.69E-46 |
| MS.gene053436 | MS.gene34554 | 0.842846 | 2.01E-58 | -1.69E-46 |
| MS.gene053479 | MS.gene34554 | 0.815433 | 9.27E-52 | -1.69E-46 |
| MS.gene053505 | MS.gene34554 | 0.807418 | 5.10E-50 | -1.69E-46 |
| MS.gene053549 | MS.gene34554 | -0.807144 | 5.84E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene34554 | 0.858085 | 1.05E-62 | -1.69E-46 |
| MS.gene053626 | MS.gene34554 | 0.854322 | 1.33E-61 | -1.69E-46 |
| MS.gene053633 | MS.gene34554 | 0.849747 | 2.65E-60 | -1.69E-46 |
| MS.gene053824 | MS.gene34554 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene053997 | MS.gene34554 | 0.802302 | 5.98E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene34554 | 0.82989 | 4.00E-55 | -1.69E-46 |
| MS.gene054408 | MS.gene34554 | 0.828254 | 9.96E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene34554 | 0.853129 | 2.93E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene34554 | 0.822326 | 2.52E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene34554 | 0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene34554 | -0.819319 | 1.24E-52 | -1.69E-46 |
| MS.gene054708 | MS.gene34554 | -0.807634 | 4.59E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene34554 | 0.843279 | 1.54E-58 | -1.69E-46 |
| MS.gene054954 | MS.gene34554 | 0.855386 | 6.53E-62 | -1.69E-46 |
| MS.gene055139 | MS.gene34554 | -0.811941 | 5.44E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene34554 | -0.810502 | 1.12E-50 | -1.69E-46 |
| MS.gene055202 | MS.gene34554 | -0.825444 | 4.67E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene34554 | 0.821505 | 3.90E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene34554 | 0.841637 | 4.21E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene34554 | 0.83998 | 1.15E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene34554 | 0.858656 | 7.09E-63 | -1.69E-46 |
| MS.gene055629 | MS.gene34554 | 0.811042 | 8.53E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene34554 | 0.808986 | 2.37E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene34554 | 0.829462 | 5.08E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene34554 | 0.85024 | 1.93E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene34554 | 0.840968 | 6.31E-58 | -1.69E-46 |
| MS.gene055776 | MS.gene34554 | 0.824802 | 6.63E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene34554 | 0.880549 | 5.01E-70 | -1.69E-46 |
| MS.gene055941 | MS.gene34554 | 0.802496 | 5.46E-49 | -1.69E-46 |
| MS.gene056040 | MS.gene34554 | 0.822986 | 1.77E-53 | -1.69E-46 |
| MS.gene056046 | MS.gene34554 | 0.833227 | 6.02E-56 | -1.69E-46 |
| MS.gene056166 | MS.gene34554 | 0.850397 | 1.74E-60 | -1.69E-46 |
| MS.gene056310 | MS.gene34554 | -0.845382 | 4.20E-59 | -1.69E-46 |
| MS.gene056311 | MS.gene34554 | -0.823911 | 1.07E-53 | -1.69E-46 |
| MS.gene056313 | MS.gene34554 | -0.819017 | 1.45E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene34554 | 0.808632 | 2.82E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene34554 | 0.828206 | 1.02E-54 | -1.69E-46 |
| MS.gene056409 | MS.gene34554 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene34554 | 0.817934 | 2.55E-52 | -1.69E-46 |
| MS.gene056446 | MS.gene34554 | 0.829752 | 4.32E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene34554 | 0.907369 | 5.46E-81 | -1.69E-46 |
| MS.gene056510 | MS.gene34554 | 0.86202 | 6.81E-64 | -1.69E-46 |
| MS.gene056657 | MS.gene34554 | 0.83361 | 4.83E-56 | -1.69E-46 |
| MS.gene056878 | MS.gene34554 | 0.852995 | 3.20E-61 | -1.69E-46 |
| MS.gene057014 | MS.gene34554 | -0.815302 | 9.91E-52 | -1.69E-46 |
| MS.gene057019 | MS.gene34554 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene34554 | 0.849561 | 2.99E-60 | -1.69E-46 |
| MS.gene057473 | MS.gene34554 | -0.806523 | 7.89E-50 | -1.69E-46 |
| MS.gene057687 | MS.gene34554 | 0.835106 | 2.04E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene34554 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene34554 | 0.819358 | 1.21E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene34554 | 0.859436 | 4.14E-63 | -1.69E-46 |
| MS.gene058109 | MS.gene34554 | -0.810697 | 1.01E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene34554 | 0.816702 | 4.83E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene34554 | 0.84714 | 1.40E-59 | -1.69E-46 |
| MS.gene058171 | MS.gene34554 | -0.848615 | 5.48E-60 | -1.69E-46 |
| MS.gene058173 | MS.gene34554 | -0.839874 | 1.22E-57 | -1.69E-46 |
| MS.gene058175 | MS.gene34554 | -0.846641 | 1.91E-59 | -1.69E-46 |
| MS.gene058183 | MS.gene34554 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene34554 | -0.803883 | 2.82E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene34554 | 0.856609 | 2.87E-62 | -1.69E-46 |
| MS.gene058419 | MS.gene34554 | 0.830179 | 3.40E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene34554 | 0.827635 | 1.40E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene34554 | 0.835368 | 1.75E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene34554 | 0.81076 | 9.82E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene34554 | 0.850947 | 1.22E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene34554 | 0.830222 | 3.32E-55 | -1.69E-46 |
| MS.gene059034 | MS.gene34554 | 0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene34554 | -0.814986 | 1.17E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene34554 | 0.812717 | 3.68E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene34554 | 0.877329 | 6.86E-69 | -1.69E-46 |
| MS.gene059368 | MS.gene34554 | 0.831905 | 1.28E-55 | -1.69E-46 |
| MS.gene059517 | MS.gene34554 | 0.835495 | 1.62E-56 | -1.69E-46 |
| MS.gene059667 | MS.gene34554 | 0.841015 | 6.14E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene34554 | 0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene059680 | MS.gene34554 | 0.829673 | 4.51E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene34554 | 0.830216 | 3.33E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene34554 | 0.84218 | 3.03E-58 | -1.69E-46 |
| MS.gene059837 | MS.gene34554 | 0.85733 | 1.76E-62 | -1.69E-46 |
| MS.gene059865 | MS.gene34554 | 0.891838 | 2.76E-74 | -1.69E-46 |
| MS.gene05996 | MS.gene34554 | 0.813881 | 2.04E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene34554 | 0.865388 | 6.12E-65 | -1.69E-46 |
| MS.gene060187 | MS.gene34554 | -0.821204 | 4.57E-53 | -1.69E-46 |
| MS.gene060339 | MS.gene34554 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene34554 | 0.816268 | 6.04E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene34554 | 0.86358 | 2.25E-64 | -1.69E-46 |
| MS.gene060593 | MS.gene34554 | -0.828251 | 9.97E-55 | -1.69E-46 |
| MS.gene060595 | MS.gene34554 | -0.878733 | 2.21E-69 | -1.69E-46 |
| MS.gene060703 | MS.gene34554 | 0.848555 | 5.69E-60 | -1.69E-46 |
| MS.gene060762 | MS.gene34554 | 0.848234 | 6.98E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene34554 | 0.894566 | 2.19E-75 | -1.69E-46 |
| MS.gene06077 | MS.gene34554 | 0.882907 | 7.02E-71 | -1.69E-46 |
| MS.gene06097 | MS.gene34554 | 0.851817 | 6.93E-61 | -1.69E-46 |
| MS.gene060982 | MS.gene34554 | 0.890794 | 7.14E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34554.t1 | MTR_0019s0070 | 94.837 | 368 | 19 | 0 | 3 | 370 | 89 | 456 | 0.0 | 712 |
| MS.gene34554.t1 | MTR_1g101330 | 67.292 | 373 | 93 | 11 | 3 | 370 | 93 | 441 | 1.16e-152 | 437 |
| MS.gene34554.t1 | MTR_4g102840 | 38.810 | 353 | 185 | 8 | 33 | 370 | 90 | 426 | 5.63e-58 | 194 |
| MS.gene34554.t1 | MTR_1g103070 | 34.954 | 329 | 134 | 11 | 21 | 335 | 124 | 386 | 2.01e-33 | 129 |
| MS.gene34554.t1 | MTR_8g102400 | 34.202 | 307 | 133 | 13 | 33 | 322 | 114 | 368 | 9.42e-28 | 113 |
| MS.gene34554.t1 | MTR_8g024540 | 31.680 | 363 | 167 | 12 | 33 | 328 | 129 | 477 | 1.38e-27 | 114 |
| MS.gene34554.t1 | MTR_8g014580 | 35.333 | 300 | 146 | 9 | 28 | 325 | 123 | 376 | 2.70e-27 | 112 |
| MS.gene34554.t1 | MTR_7g114870 | 44.094 | 127 | 58 | 3 | 33 | 158 | 108 | 222 | 1.11e-19 | 89.7 |
| MS.gene34554.t1 | MTR_1g095740 | 52.439 | 82 | 38 | 1 | 26 | 107 | 137 | 217 | 2.36e-18 | 86.7 |
| MS.gene34554.t1 | MTR_0047s0040 | 42.424 | 99 | 46 | 2 | 20 | 109 | 92 | 188 | 3.91e-17 | 82.8 |
| MS.gene34554.t1 | MTR_4g087420 | 45.333 | 75 | 41 | 0 | 33 | 107 | 148 | 222 | 1.27e-16 | 81.6 |
| MS.gene34554.t1 | MTR_4g050480 | 68.421 | 57 | 18 | 0 | 26 | 82 | 91 | 147 | 2.87e-16 | 80.1 |
| MS.gene34554.t1 | MTR_4g050480 | 68.421 | 57 | 18 | 0 | 26 | 82 | 92 | 148 | 2.99e-16 | 80.1 |
| MS.gene34554.t1 | MTR_2g100740 | 56.000 | 75 | 30 | 1 | 22 | 93 | 85 | 159 | 4.17e-16 | 79.0 |
| MS.gene34554.t1 | MTR_1g041430 | 63.934 | 61 | 21 | 1 | 23 | 83 | 104 | 163 | 4.32e-16 | 79.7 |
| MS.gene34554.t1 | MTR_4g108140 | 53.731 | 67 | 31 | 0 | 32 | 98 | 101 | 167 | 7.24e-16 | 79.3 |
| MS.gene34554.t1 | MTR_4g108140 | 53.731 | 67 | 31 | 0 | 32 | 98 | 100 | 166 | 7.43e-16 | 79.3 |
| MS.gene34554.t1 | MTR_8g074730 | 60.000 | 65 | 26 | 0 | 27 | 91 | 67 | 131 | 9.10e-16 | 73.9 |
| MS.gene34554.t1 | MTR_3g091560 | 38.235 | 170 | 73 | 5 | 23 | 161 | 104 | 272 | 1.28e-15 | 78.2 |
| MS.gene34554.t1 | MTR_7g114700 | 45.205 | 73 | 40 | 0 | 26 | 98 | 130 | 202 | 1.71e-14 | 74.7 |
| MS.gene34554.t1 | MTR_1g007920 | 65.000 | 60 | 21 | 0 | 23 | 82 | 114 | 173 | 3.24e-14 | 73.9 |
| MS.gene34554.t1 | MTR_1g007920 | 65.000 | 60 | 21 | 0 | 23 | 82 | 89 | 148 | 3.56e-14 | 73.9 |
| MS.gene34554.t1 | MTR_3g104570 | 61.404 | 57 | 22 | 0 | 26 | 82 | 86 | 142 | 2.09e-13 | 71.6 |
| MS.gene34554.t1 | MTR_1g066800 | 45.333 | 75 | 41 | 0 | 33 | 107 | 118 | 192 | 2.81e-13 | 71.2 |
| MS.gene34554.t1 | MTR_1g066800 | 45.333 | 75 | 41 | 0 | 33 | 107 | 123 | 197 | 3.50e-13 | 70.9 |
| MS.gene34554.t1 | MTR_6g033415 | 31.364 | 220 | 110 | 5 | 17 | 201 | 98 | 311 | 6.29e-13 | 70.1 |
| MS.gene34554.t1 | MTR_5g038620 | 47.945 | 73 | 35 | 1 | 26 | 98 | 117 | 186 | 1.08e-12 | 69.7 |
| MS.gene34554.t1 | MTR_1g023760 | 49.153 | 59 | 30 | 0 | 33 | 91 | 126 | 184 | 4.41e-11 | 64.7 |
| MS.gene34554.t1 | MTR_3g020990 | 50.000 | 64 | 32 | 0 | 44 | 107 | 103 | 166 | 7.84e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34554.t1 | AT5G07240 | 44.037 | 327 | 92 | 14 | 25 | 337 | 100 | 349 | 1.53e-54 | 184 |
| MS.gene34554.t1 | AT5G07240 | 44.037 | 327 | 92 | 14 | 25 | 337 | 146 | 395 | 3.40e-54 | 185 |
| MS.gene34554.t1 | AT5G62070 | 47.319 | 317 | 94 | 12 | 25 | 337 | 111 | 358 | 4.39e-53 | 181 |
| MS.gene34554.t1 | AT4G23060 | 35.519 | 366 | 176 | 14 | 23 | 370 | 160 | 483 | 5.86e-36 | 137 |
| MS.gene34554.t1 | AT3G16490 | 33.837 | 331 | 126 | 9 | 3 | 325 | 90 | 335 | 3.23e-28 | 114 |
| MS.gene34554.t1 | AT1G01110 | 32.749 | 342 | 159 | 11 | 33 | 320 | 123 | 447 | 5.28e-28 | 115 |
| MS.gene34554.t1 | AT4G00820 | 31.481 | 378 | 138 | 16 | 20 | 320 | 120 | 453 | 1.71e-23 | 102 |
| MS.gene34554.t1 | AT3G49260 | 59.740 | 77 | 31 | 0 | 23 | 99 | 112 | 188 | 3.51e-20 | 92.0 |
| MS.gene34554.t1 | AT3G49260 | 59.740 | 77 | 31 | 0 | 23 | 99 | 112 | 188 | 3.51e-20 | 92.0 |
| MS.gene34554.t1 | AT3G49260 | 59.740 | 77 | 31 | 0 | 23 | 99 | 112 | 188 | 3.51e-20 | 92.0 |
| MS.gene34554.t1 | AT3G49260 | 59.740 | 77 | 31 | 0 | 23 | 99 | 112 | 188 | 3.83e-20 | 92.0 |
| MS.gene34554.t1 | AT4G14750 | 60.563 | 71 | 26 | 1 | 28 | 96 | 100 | 170 | 4.59e-20 | 90.9 |
| MS.gene34554.t1 | AT4G14750 | 60.563 | 71 | 26 | 1 | 28 | 96 | 159 | 229 | 6.86e-20 | 91.3 |
| MS.gene34554.t1 | AT4G14750 | 60.563 | 71 | 26 | 1 | 28 | 96 | 159 | 229 | 6.95e-20 | 90.9 |
| MS.gene34554.t1 | AT4G29150 | 33.667 | 300 | 124 | 10 | 28 | 322 | 128 | 357 | 1.25e-19 | 90.1 |
| MS.gene34554.t1 | AT3G59690 | 27.707 | 314 | 154 | 10 | 34 | 322 | 172 | 437 | 2.53e-19 | 89.7 |
| MS.gene34554.t1 | AT3G59690 | 27.707 | 314 | 154 | 10 | 34 | 322 | 172 | 437 | 2.53e-19 | 89.7 |
| MS.gene34554.t1 | AT1G51960 | 61.972 | 71 | 27 | 0 | 29 | 99 | 98 | 168 | 9.08e-19 | 87.0 |
| MS.gene34554.t1 | AT3G52290 | 51.899 | 79 | 37 | 1 | 29 | 107 | 107 | 184 | 5.45e-18 | 85.5 |
| MS.gene34554.t1 | AT1G18840 | 33.784 | 148 | 90 | 4 | 26 | 166 | 105 | 251 | 1.70e-17 | 84.3 |
| MS.gene34554.t1 | AT1G18840 | 33.784 | 148 | 90 | 4 | 26 | 166 | 105 | 251 | 1.70e-17 | 84.3 |
| MS.gene34554.t1 | AT1G18840 | 33.784 | 148 | 90 | 4 | 26 | 166 | 105 | 251 | 1.70e-17 | 84.3 |
| MS.gene34554.t1 | AT5G03040 | 48.750 | 80 | 41 | 0 | 28 | 107 | 112 | 191 | 3.48e-17 | 83.2 |
| MS.gene34554.t1 | AT5G03040 | 48.750 | 80 | 41 | 0 | 28 | 107 | 112 | 191 | 3.48e-17 | 83.2 |
| MS.gene34554.t1 | AT5G03040 | 48.750 | 80 | 41 | 0 | 28 | 107 | 112 | 191 | 3.48e-17 | 83.2 |
| MS.gene34554.t1 | AT5G13460 | 50.685 | 73 | 36 | 0 | 29 | 101 | 109 | 181 | 1.70e-16 | 80.9 |
| MS.gene34554.t1 | AT1G17480 | 57.971 | 69 | 29 | 0 | 33 | 101 | 96 | 164 | 1.89e-16 | 80.5 |
| MS.gene34554.t1 | AT3G22190 | 70.909 | 55 | 16 | 0 | 28 | 82 | 85 | 139 | 1.13e-15 | 78.2 |
| MS.gene34554.t1 | AT3G22190 | 70.909 | 55 | 16 | 0 | 28 | 82 | 85 | 139 | 1.13e-15 | 78.2 |
| MS.gene34554.t1 | AT3G22190 | 70.909 | 55 | 16 | 0 | 28 | 82 | 85 | 139 | 1.13e-15 | 78.2 |
| MS.gene34554.t1 | AT3G22190 | 70.909 | 55 | 16 | 0 | 28 | 82 | 85 | 139 | 1.13e-15 | 78.2 |
| MS.gene34554.t1 | AT1G72670 | 62.712 | 59 | 22 | 0 | 33 | 91 | 95 | 153 | 1.70e-15 | 77.8 |
| MS.gene34554.t1 | AT2G43680 | 49.254 | 67 | 34 | 0 | 33 | 99 | 325 | 391 | 1.79e-15 | 78.2 |
| MS.gene34554.t1 | AT2G43680 | 49.254 | 67 | 34 | 0 | 33 | 99 | 324 | 390 | 1.82e-15 | 78.2 |
| MS.gene34554.t1 | AT2G43680 | 49.254 | 67 | 34 | 0 | 33 | 99 | 324 | 390 | 1.82e-15 | 78.2 |
| MS.gene34554.t1 | AT2G43680 | 49.254 | 67 | 34 | 0 | 33 | 99 | 324 | 390 | 1.82e-15 | 78.2 |
| MS.gene34554.t1 | AT2G43680 | 49.254 | 67 | 34 | 0 | 33 | 99 | 324 | 390 | 1.82e-15 | 78.2 |
| MS.gene34554.t1 | AT1G74690 | 52.055 | 73 | 34 | 1 | 26 | 98 | 109 | 180 | 2.57e-15 | 77.8 |
| MS.gene34554.t1 | AT3G49380 | 64.912 | 57 | 20 | 0 | 33 | 89 | 112 | 168 | 4.22e-15 | 76.3 |
| MS.gene34554.t1 | AT2G26180 | 61.538 | 65 | 24 | 1 | 18 | 82 | 72 | 135 | 6.28e-15 | 76.3 |
| MS.gene34554.t1 | AT4G10640 | 63.158 | 57 | 21 | 0 | 33 | 89 | 102 | 158 | 2.62e-14 | 74.3 |
| MS.gene34554.t1 | AT2G26410 | 45.570 | 79 | 43 | 0 | 19 | 97 | 136 | 214 | 8.51e-14 | 73.2 |
| MS.gene34554.t1 | AT2G26410 | 45.570 | 79 | 43 | 0 | 19 | 97 | 136 | 214 | 8.51e-14 | 73.2 |
| MS.gene34554.t1 | AT3G51380 | 60.606 | 66 | 25 | 1 | 29 | 94 | 36 | 100 | 2.06e-13 | 66.2 |
| MS.gene34554.t1 | AT1G19870 | 29.524 | 210 | 114 | 8 | 26 | 227 | 208 | 391 | 3.68e-12 | 68.2 |
| MS.gene34554.t1 | AT1G19870 | 29.524 | 210 | 114 | 8 | 26 | 227 | 25 | 208 | 4.85e-12 | 67.8 |
| MS.gene34554.t1 | AT3G09710 | 28.571 | 182 | 101 | 3 | 28 | 180 | 105 | 286 | 6.46e-12 | 67.0 |
| MS.gene34554.t1 | AT3G09710 | 43.662 | 71 | 40 | 0 | 28 | 98 | 105 | 175 | 4.39e-11 | 64.7 |
Find 83 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAATGTCACCTTAAAT+TGG | 0.238670 | 6.3:+53452708 | None:intergenic |
| GTCGGCTTTCCGAGGTTATT+TGG | 0.252225 | 6.3:-53459226 | MS.gene34554:intron |
| TGGCAAATACTCAATCTTCT+AGG | 0.255891 | 6.3:-53452906 | MS.gene34554:CDS |
| TTGGGAGTAGTACCAATTTA+AGG | 0.275762 | 6.3:-53452720 | MS.gene34554:CDS |
| CTCTGGTTATCCTAGTTATA+TGG | 0.278103 | 6.3:-53452926 | MS.gene34554:CDS |
| ATTCAAGGCCTTTGGGAATC+AGG | 0.291166 | 6.3:-53452811 | MS.gene34554:CDS |
| CTAGGTCTATTCAAGGCCTT+TGG | 0.325862 | 6.3:-53452819 | MS.gene34554:CDS |
| ACAAGTAGCTTGAACAGAAT+TGG | 0.333286 | 6.3:-53452739 | MS.gene34554:CDS |
| CTAACCAATTTGAACCTAAC+CGG | 0.349715 | 6.3:+53453358 | None:intergenic |
| TGCAAGTCGTGTGCACATTT+CGG | 0.350011 | 6.3:-53454683 | MS.gene34554:CDS |
| GTGGACTACTCTCGGCGGTT+CGG | 0.368312 | 6.3:+53453046 | None:intergenic |
| TCGATGAAGCGCCGCCGGTT+TGG | 0.373360 | 6.3:+53453307 | None:intergenic |
| AGGCTAGAGTTTGAGAGATA+TGG | 0.377602 | 6.3:-53452850 | MS.gene34554:CDS |
| GAGCCCGGTTAGGTTCAAAT+TGG | 0.391331 | 6.3:-53453362 | MS.gene34554:CDS |
| TGGACTACTCTCGGCGGTTC+GGG | 0.393860 | 6.3:+53453047 | None:intergenic |
| CTACTAAAAGTGAGAGTTCA+TGG | 0.413052 | 6.3:-53452966 | MS.gene34554:CDS |
| GAAAACACATGGAGCCAAAC+CGG | 0.429881 | 6.3:-53453321 | MS.gene34554:CDS |
| TAGGTCTATTCAAGGCCTTT+GGG | 0.441659 | 6.3:-53452818 | MS.gene34554:CDS |
| ATTGGTGAAATTGCAAGCTT+TGG | 0.450056 | 6.3:-53454788 | MS.gene34554:CDS |
| CAAGTAGCTTGAACAGAATT+GGG | 0.453202 | 6.3:-53452738 | MS.gene34554:CDS |
| GTTCAAATTGGTTAGACAGT+TGG | 0.455901 | 6.3:-53453350 | MS.gene34554:CDS |
| AGAGATATGGTTCATCTACT+AGG | 0.456026 | 6.3:-53452837 | MS.gene34554:CDS |
| CATTGGTTCGACTTCAGTCT+CGG | 0.466438 | 6.3:-53454711 | MS.gene34554:CDS |
| GTCTATAGTACGAAATTTGA+CGG | 0.477335 | 6.3:-53453635 | MS.gene34554:CDS |
| CTGTTCAAGCTACTTGTGGC+TGG | 0.485442 | 6.3:+53452745 | None:intergenic |
| TCAAACTCTAGCCTTTGTCT+TGG | 0.489677 | 6.3:+53452859 | None:intergenic |
| AAATTCTTGAAGTAGATACT+TGG | 0.490960 | 6.3:-53453254 | MS.gene34554:CDS |
| TACTCAATCTTCTAGGGCTA+AGG | 0.493624 | 6.3:-53452899 | MS.gene34554:CDS |
| GACTGGTCGGAGACGGTTGT+CGG | 0.496284 | 6.3:-53459277 | MS.gene34554:CDS |
| AGTGGGTGTTCATAATCATC+AGG | 0.504957 | 6.3:+53453662 | None:intergenic |
| TGAGTATTTGCCATATAACT+AGG | 0.506933 | 6.3:+53452916 | None:intergenic |
| GGCAAATACTCAATCTTCTA+GGG | 0.514783 | 6.3:-53452905 | MS.gene34554:CDS |
| ATTAAGAGCACTTAAAGCAT+TGG | 0.515042 | 6.3:-53454806 | MS.gene34554:CDS |
| TTCAAGGCCTTTGGGAATCA+GGG | 0.517803 | 6.3:-53452810 | MS.gene34554:CDS |
| ACGGCTGGTGGAAATTCTGC+TGG | 0.520981 | 6.3:-53459318 | MS.gene34554:CDS |
| AATTCTGTTCAAGCTACTTG+TGG | 0.522848 | 6.3:+53452741 | None:intergenic |
| TGCTTCATAGAAGAGAGACT+TGG | 0.525983 | 6.3:+53453102 | None:intergenic |
| AACTTAGAAAGAGCCCGGTT+AGG | 0.536800 | 6.3:-53453372 | MS.gene34554:CDS |
| CAAGACTCGAAAGTGGTTCG+AGG | 0.538246 | 6.3:-53453005 | MS.gene34554:CDS |
| TACTAAAAGTGAGAGTTCAT+GGG | 0.539030 | 6.3:-53452965 | MS.gene34554:CDS |
| GGACCTCGGACTCCGACGAC+TGG | 0.539831 | 6.3:-53459294 | MS.gene34554:CDS |
| ATGAATTTGGAAGGCAAGGA+GGG | 0.543058 | 6.3:-53454830 | MS.gene34554:intron |
| TGTTAGACTAACAAGTAATA+CGG | 0.543755 | 6.3:-53459337 | MS.gene34554:intron |
| AATCTTCTAGGGCTAAGGTT+AGG | 0.545081 | 6.3:-53452894 | MS.gene34554:CDS |
| GCTATAGAAGAGCGTTTCGA+CGG | 0.545720 | 6.3:+53453132 | None:intergenic |
| TCATCTACTAGGTCTATTCA+AGG | 0.545942 | 6.3:-53452826 | MS.gene34554:CDS |
| ATTGGTTCGACTTCAGTCTC+GGG | 0.550042 | 6.3:-53454710 | MS.gene34554:CDS |
| GCTTCTTCAAGACTCGAAAG+TGG | 0.557955 | 6.3:-53453012 | MS.gene34554:CDS |
| AAATTGCAAGCTTTGGTGAG+AGG | 0.564599 | 6.3:-53454781 | MS.gene34554:CDS |
| AAGATTCAGTCGGCTTTCCG+AGG | 0.566154 | 6.3:-53459234 | MS.gene34554:CDS |
| CTCGGACTCCGACGACTGGT+CGG | 0.566292 | 6.3:-53459290 | MS.gene34554:CDS |
| CTATGTTGTGATTTCAAATG+TGG | 0.568605 | 6.3:+53453228 | None:intergenic |
| TCGTACTATAGACGCGAAGT+GGG | 0.572818 | 6.3:+53453645 | None:intergenic |
| AATCATGAATACCTTGAGGA+TGG | 0.574647 | 6.3:+53453607 | None:intergenic |
| CTCGAAAGTGGTTCGAGGCG+AGG | 0.574732 | 6.3:-53453000 | MS.gene34554:CDS |
| TGACGGATCTTCCATCCTCA+AGG | 0.574798 | 6.3:-53453618 | MS.gene34554:intron |
| TCTTCTATGAAGCATCAGAA+AGG | 0.575782 | 6.3:-53453093 | MS.gene34554:CDS |
| AACCGCCGAGAGTAGTCCAC+AGG | 0.576504 | 6.3:-53453043 | MS.gene34554:CDS |
| CTCCGACGACTGGTCGGAGA+CGG | 0.577423 | 6.3:-53459284 | MS.gene34554:CDS |
| GAAATTCTGCTGGAGGACCT+CGG | 0.579576 | 6.3:-53459308 | MS.gene34554:CDS |
| TTCGTACTATAGACGCGAAG+TGG | 0.579588 | 6.3:+53453644 | None:intergenic |
| CGACCAGTCGTCGGAGTCCG+AGG | 0.580019 | 6.3:+53459291 | None:intergenic |
| ACATGAACTTAGAAAGAGCC+CGG | 0.588306 | 6.3:-53453377 | MS.gene34554:CDS |
| GAAAGCCGACTGAATCTTCA+CGG | 0.590040 | 6.3:+53459239 | None:intergenic |
| TGAATAATGATGTTGAAAAG+AGG | 0.593176 | 6.3:+53453197 | None:intergenic |
| AAATTGGTTAGACAGTTGGA+TGG | 0.594225 | 6.3:-53453346 | MS.gene34554:CDS |
| CTAACAAGTAATACGGCTGG+TGG | 0.594249 | 6.3:-53459330 | MS.gene34554:CDS |
| AAATGCCTGTGGACTACTCT+CGG | 0.594597 | 6.3:+53453038 | None:intergenic |
| AACCGTCTCCGACCAGTCGT+CGG | 0.595592 | 6.3:+53459282 | None:intergenic |
| CACAAAGTGCTCCAAGACAA+AGG | 0.601702 | 6.3:-53452870 | MS.gene34554:CDS |
| AGACTAACAAGTAATACGGC+TGG | 0.605995 | 6.3:-53459333 | MS.gene34554:CDS |
| TATTCTCATGTGTTATGGGA+AGG | 0.606436 | 6.3:-53461871 | None:intergenic |
| TAACCAATTTGAACCTAACC+GGG | 0.608700 | 6.3:+53453359 | None:intergenic |
| AACACATGGAGCCAAACCGG+CGG | 0.614080 | 6.3:-53453318 | MS.gene34554:CDS |
| TGCTGCCGTGAAGATTCAGT+CGG | 0.618990 | 6.3:-53459244 | MS.gene34554:CDS |
| TATGAATTTGGAAGGCAAGG+AGG | 0.623814 | 6.3:-53454831 | MS.gene34554:intron |
| GCTAAGACGAATGCAAACAT+TGG | 0.623828 | 6.3:-53454728 | MS.gene34554:CDS |
| ACTAAAAGTGAGAGTTCATG+GGG | 0.653519 | 6.3:-53452964 | MS.gene34554:CDS |
| GCTGGTGGAAATTCTGCTGG+AGG | 0.657689 | 6.3:-53459315 | MS.gene34554:CDS |
| AATTAGACCCTGATTCCCAA+AGG | 0.667307 | 6.3:+53452803 | None:intergenic |
| TGTTACATACCAAATAACCT+CGG | 0.675147 | 6.3:+53459217 | None:intergenic |
| GTTGGATGGAAGAAAACACA+TGG | 0.681144 | 6.3:-53453332 | MS.gene34554:CDS |
| TGCCTGTGGACTACTCTCGG+CGG | 0.763952 | 6.3:+53453041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 53452717 | 53461879 | 53452717 | ID=MS.gene34554 |
| chr6.3 | mRNA | 53452717 | 53461879 | 53452717 | ID=MS.gene34554.t1;Parent=MS.gene34554 |
| chr6.3 | exon | 53461872 | 53461879 | 53461872 | ID=MS.gene34554.t1.exon1;Parent=MS.gene34554.t1 |
| chr6.3 | CDS | 53461872 | 53461879 | 53461872 | ID=cds.MS.gene34554.t1;Parent=MS.gene34554.t1 |
| chr6.3 | exon | 53459227 | 53459353 | 53459227 | ID=MS.gene34554.t1.exon2;Parent=MS.gene34554.t1 |
| chr6.3 | CDS | 53459227 | 53459353 | 53459227 | ID=cds.MS.gene34554.t1;Parent=MS.gene34554.t1 |
| chr6.3 | exon | 53454642 | 53454839 | 53454642 | ID=MS.gene34554.t1.exon3;Parent=MS.gene34554.t1 |
| chr6.3 | CDS | 53454642 | 53454839 | 53454642 | ID=cds.MS.gene34554.t1;Parent=MS.gene34554.t1 |
| chr6.3 | exon | 53453619 | 53453687 | 53453619 | ID=MS.gene34554.t1.exon4;Parent=MS.gene34554.t1 |
| chr6.3 | CDS | 53453619 | 53453687 | 53453619 | ID=cds.MS.gene34554.t1;Parent=MS.gene34554.t1 |
| chr6.3 | exon | 53452717 | 53453427 | 53452717 | ID=MS.gene34554.t1.exon5;Parent=MS.gene34554.t1 |
| chr6.3 | CDS | 53452717 | 53453427 | 53452717 | ID=cds.MS.gene34554.t1;Parent=MS.gene34554.t1 |
| Gene Sequence |
| Protein sequence |
