Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062892.t1 | KEH30456.1 | 92.4 | 172 | 3 | 1 | 1 | 172 | 155 | 316 | 2.10E-79 | 305.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062892.t1 | A0A072UM55 | 92.4 | 172 | 3 | 1 | 1 | 172 | 155 | 316 | 1.5e-79 | 305.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene062892 | 0.812971 | 3.24E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene062892 | 0.825331 | 4.97E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene062892 | 0.801571 | 8.45E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene062892 | 0.837205 | 5.96E-57 | -1.69E-46 |
| MS.gene049369 | MS.gene062892 | 0.872571 | 2.87E-67 | -1.69E-46 |
| MS.gene049427 | MS.gene062892 | 0.821045 | 4.98E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene062892 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene062892 | 0.825015 | 5.90E-54 | -1.69E-46 |
| MS.gene049907 | MS.gene062892 | 0.80649 | 8.02E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene062892 | 0.842617 | 2.32E-58 | -1.69E-46 |
| MS.gene050593 | MS.gene062892 | 0.848778 | 4.93E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene062892 | 0.820381 | 7.07E-53 | -1.69E-46 |
| MS.gene050686 | MS.gene062892 | 0.816456 | 5.48E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene062892 | 0.827092 | 1.89E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene062892 | 0.831857 | 1.32E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene062892 | 0.83373 | 4.51E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene062892 | 0.841652 | 4.17E-58 | -1.69E-46 |
| MS.gene050950 | MS.gene062892 | 0.82316 | 1.61E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene062892 | 0.812431 | 4.25E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene062892 | 0.829657 | 4.55E-55 | -1.69E-46 |
| MS.gene051387 | MS.gene062892 | 0.853595 | 2.15E-61 | -1.69E-46 |
| MS.gene051666 | MS.gene062892 | 0.834365 | 3.13E-56 | -1.69E-46 |
| MS.gene051692 | MS.gene062892 | 0.813276 | 2.78E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene062892 | 0.80616 | 9.41E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene062892 | 0.808572 | 2.90E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene062892 | 0.822322 | 2.52E-53 | -1.69E-46 |
| MS.gene052290 | MS.gene062892 | 0.80547 | 1.31E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene062892 | 0.817539 | 3.13E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene062892 | 0.809242 | 2.08E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene062892 | 0.820696 | 5.98E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene062892 | 0.814419 | 1.56E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene062892 | 0.811736 | 6.03E-51 | -1.69E-46 |
| MS.gene052508 | MS.gene062892 | 0.80149 | 8.78E-49 | -1.69E-46 |
| MS.gene052510 | MS.gene062892 | 0.809465 | 1.87E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene062892 | 0.828757 | 7.53E-55 | -1.69E-46 |
| MS.gene053103 | MS.gene062892 | 0.818507 | 1.89E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene062892 | 0.840456 | 8.60E-58 | -1.69E-46 |
| MS.gene053207 | MS.gene062892 | 0.819785 | 9.68E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene062892 | 0.828233 | 1.01E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene062892 | 0.822366 | 2.46E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene062892 | 0.834432 | 3.01E-56 | -1.69E-46 |
| MS.gene053384 | MS.gene062892 | 0.820676 | 6.05E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene062892 | 0.831698 | 1.44E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene062892 | 0.828103 | 1.08E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene062892 | 0.801376 | 9.27E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene062892 | 0.830471 | 2.88E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene062892 | 0.816598 | 5.09E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene062892 | 0.820625 | 6.21E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene062892 | 0.809278 | 2.05E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene062892 | 0.813937 | 1.99E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene062892 | 0.815375 | 9.55E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene062892 | 0.817112 | 3.91E-52 | -1.69E-46 |
| MS.gene054955 | MS.gene062892 | 0.808373 | 3.20E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene062892 | 0.848157 | 7.33E-60 | -1.69E-46 |
| MS.gene055116 | MS.gene062892 | 0.811864 | 5.66E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene062892 | 0.804282 | 2.33E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene062892 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene062892 | 0.830258 | 3.25E-55 | -1.69E-46 |
| MS.gene055499 | MS.gene062892 | 0.804063 | 2.59E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene062892 | 0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene062892 | 0.851939 | 6.40E-61 | -1.69E-46 |
| MS.gene05592 | MS.gene062892 | 0.858251 | 9.36E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene062892 | 0.808999 | 2.35E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene062892 | 0.81221 | 4.75E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene062892 | 0.821378 | 4.17E-53 | -1.69E-46 |
| MS.gene056410 | MS.gene062892 | 0.833851 | 4.20E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene062892 | 0.827877 | 1.23E-54 | -1.69E-46 |
| MS.gene056448 | MS.gene062892 | 0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene062892 | 0.848724 | 5.11E-60 | -1.69E-46 |
| MS.gene056609 | MS.gene062892 | 0.82514 | 5.51E-54 | -1.69E-46 |
| MS.gene05664 | MS.gene062892 | 0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene062892 | 0.814054 | 1.87E-51 | -1.69E-46 |
| MS.gene05666 | MS.gene062892 | 0.80857 | 2.90E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene062892 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene062892 | 0.817607 | 3.02E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene062892 | 0.816507 | 5.34E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene062892 | 0.842862 | 2.00E-58 | -1.69E-46 |
| MS.gene057146 | MS.gene062892 | 0.836381 | 9.67E-57 | -1.69E-46 |
| MS.gene057285 | MS.gene062892 | 0.80723 | 5.60E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene062892 | 0.852479 | 4.49E-61 | -1.69E-46 |
| MS.gene05735 | MS.gene062892 | 0.8314 | 1.71E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene062892 | 0.857151 | 1.98E-62 | -1.69E-46 |
| MS.gene057734 | MS.gene062892 | 0.841218 | 5.43E-58 | -1.69E-46 |
| MS.gene057926 | MS.gene062892 | 0.84276 | 2.12E-58 | -1.69E-46 |
| MS.gene057927 | MS.gene062892 | 0.807459 | 5.00E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene062892 | 0.840856 | 6.76E-58 | -1.69E-46 |
| MS.gene058293 | MS.gene062892 | 0.815818 | 7.61E-52 | -1.69E-46 |
| MS.gene058323 | MS.gene062892 | 0.823185 | 1.59E-53 | -1.69E-46 |
| MS.gene058459 | MS.gene062892 | 0.818433 | 1.97E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene062892 | 0.831748 | 1.40E-55 | -1.69E-46 |
| MS.gene059305 | MS.gene062892 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene062892 | 0.813245 | 2.82E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene062892 | 0.832138 | 1.12E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene062892 | 0.81469 | 1.35E-51 | -1.69E-46 |
| MS.gene05959 | MS.gene062892 | 0.822319 | 2.52E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene062892 | 0.839381 | 1.64E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene062892 | 0.837175 | 6.07E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene062892 | 0.830867 | 2.31E-55 | -1.69E-46 |
| MS.gene059695 | MS.gene062892 | 0.834058 | 3.73E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene062892 | 0.879505 | 1.18E-69 | -1.69E-46 |
| MS.gene059718 | MS.gene062892 | 0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene059807 | MS.gene062892 | 0.808192 | 3.50E-50 | -1.69E-46 |
| MS.gene05986 | MS.gene062892 | 0.806962 | 6.37E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene062892 | 0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene062892 | 0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene060193 | MS.gene062892 | 0.812995 | 3.20E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene062892 | 0.802073 | 6.67E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene062892 | 0.805076 | 1.59E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene062892 | 0.879318 | 1.37E-69 | -1.69E-46 |
| MS.gene060818 | MS.gene062892 | 0.866511 | 2.70E-65 | -1.69E-46 |
| MS.gene060835 | MS.gene062892 | 0.81139 | 7.17E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene062892 | 0.851429 | 8.92E-61 | -1.69E-46 |
| MS.gene061041 | MS.gene062892 | 0.872761 | 2.48E-67 | -1.69E-46 |
| MS.gene061051 | MS.gene062892 | -0.840069 | 1.09E-57 | -1.69E-46 |
| MS.gene061134 | MS.gene062892 | 0.800394 | 1.47E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene062892 | 0.86839 | 6.77E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062892.t1 | MTR_4g071190 | 92.442 | 172 | 3 | 1 | 1 | 172 | 83 | 244 | 2.32e-111 | 320 |
| MS.gene062892.t1 | MTR_4g071190 | 92.442 | 172 | 3 | 1 | 1 | 172 | 155 | 316 | 7.15e-111 | 321 |
| MS.gene062892.t1 | MTR_4g071190 | 92.442 | 172 | 3 | 1 | 1 | 172 | 155 | 316 | 1.76e-110 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062892.t1 | AT2G21385 | 70.175 | 171 | 41 | 1 | 2 | 172 | 83 | 243 | 1.70e-82 | 245 |
| MS.gene062892.t1 | AT2G21385 | 70.175 | 171 | 41 | 1 | 2 | 172 | 5 | 165 | 1.80e-82 | 244 |
| MS.gene062892.t1 | AT2G21385 | 70.175 | 171 | 41 | 1 | 2 | 172 | 5 | 165 | 1.80e-82 | 244 |
| MS.gene062892.t1 | AT2G21385 | 70.175 | 171 | 41 | 1 | 2 | 172 | 5 | 165 | 1.80e-82 | 244 |
| MS.gene062892.t1 | AT2G21385 | 70.175 | 171 | 41 | 1 | 2 | 172 | 83 | 243 | 9.75e-82 | 245 |
Find 46 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTTGCCTGCTCATTAT+AGG | 0.218102 | 4.1:+77077930 | None:intergenic |
| TTTGAGTGCTTGAGGATCTT+TGG | 0.251259 | 4.1:+77078868 | None:intergenic |
| TTGCTTTCAATCCGGGCTTC+TGG | 0.274329 | 4.1:-77079277 | MS.gene062892:CDS |
| ATGATGAAGGAGAGATTTCT+TGG | 0.319841 | 4.1:-77078895 | MS.gene062892:CDS |
| GACTATAAACAAACCTTTCA+TGG | 0.327347 | 4.1:+77077822 | None:intergenic |
| TTGAGTGCTTGAGGATCTTT+GGG | 0.334915 | 4.1:+77078869 | None:intergenic |
| ATCATCTCATTGATATGCTT+CGG | 0.342932 | 4.1:-77080056 | None:intergenic |
| TCCTCAAGCACTCAAATTGA+TGG | 0.351498 | 4.1:-77078861 | MS.gene062892:CDS |
| GCAGAAAGATTACGAAGAAT+TGG | 0.379025 | 4.1:-77079109 | MS.gene062892:intron |
| AACATCCTTGCTTTCAATCC+GGG | 0.396318 | 4.1:-77079284 | MS.gene062892:CDS |
| AGCACTCAAATTGATGGAAA+TGG | 0.404179 | 4.1:-77078855 | MS.gene062892:intron |
| TCATCTCATTGATATGCTTC+GGG | 0.406209 | 4.1:-77080055 | None:intergenic |
| AAACATCCTTGCTTTCAATC+CGG | 0.413335 | 4.1:-77079285 | MS.gene062892:CDS |
| AAGGGAGATGGTGATAAGCC+TGG | 0.469587 | 4.1:-77077913 | MS.gene062892:CDS |
| AAGGGAACAAGCAGGACAGC+TGG | 0.472440 | 4.1:-77078320 | MS.gene062892:CDS |
| AAACCTGTGATTAATGATGA+AGG | 0.474405 | 4.1:-77078908 | MS.gene062892:CDS |
| GCCTATAATGAGCAGGCAAA+GGG | 0.497333 | 4.1:-77077931 | MS.gene062892:CDS |
| TCCATCAATTTGAGTGCTTG+AGG | 0.497955 | 4.1:+77078860 | None:intergenic |
| TGCAACATAGCCTCAAGCCC+AGG | 0.514404 | 4.1:+77077895 | None:intergenic |
| TCTCCTTCATCATTAATCAC+AGG | 0.515609 | 4.1:+77078905 | None:intergenic |
| TCTTAGTTGTGCATTAACTT+CGG | 0.528826 | 4.1:+77078282 | None:intergenic |
| ATCATTAGGAAATAAATCAA+AGG | 0.530590 | 4.1:-77078339 | MS.gene062892:intron |
| TGCCTATAATGAGCAGGCAA+AGG | 0.536971 | 4.1:-77077932 | MS.gene062892:CDS |
| GCTTGAGGCTATGTTGCAAA+AGG | 0.540785 | 4.1:-77077890 | MS.gene062892:CDS |
| TCATTAGGAAATAAATCAAA+GGG | 0.542609 | 4.1:-77078338 | MS.gene062892:intron |
| TGGTGATAAGCCTGGGCTTG+AGG | 0.551600 | 4.1:-77077905 | MS.gene062892:CDS |
| CAAGCAGGACAGCTGGATGA+AGG | 0.559063 | 4.1:-77078313 | MS.gene062892:CDS |
| TCTTGTGGTTAACAAGACTA+AGG | 0.559884 | 4.1:-77079061 | MS.gene062892:intron |
| AATGAGCAGGCAAAGGGAGA+TGG | 0.561640 | 4.1:-77077925 | MS.gene062892:CDS |
| GTATGTTGCCTATAATGAGC+AGG | 0.562348 | 4.1:-77077938 | MS.gene062892:CDS |
| AAACGCACTTATGCCATGAA+AGG | 0.571968 | 4.1:-77077835 | None:intergenic |
| AGGGAGATGGTGATAAGCCT+GGG | 0.573055 | 4.1:-77077912 | MS.gene062892:CDS |
| AGAAGCCCGGATTGAAAGCA+AGG | 0.575898 | 4.1:+77079279 | None:intergenic |
| GCAAGTCGTATCCAGAAGCC+CGG | 0.576411 | 4.1:+77079266 | None:intergenic |
| GTCTGCAACAGATGTCCTGA+AGG | 0.577122 | 4.1:-77078939 | MS.gene062892:CDS |
| ATCTGATACTTGCAAGTCTG+AGG | 0.579623 | 4.1:-77079237 | MS.gene062892:CDS |
| TATGAATGTGGTGGATCTTG+TGG | 0.585958 | 4.1:-77079076 | MS.gene062892:CDS |
| AGTGCTTGAGGATCTTTGGG+AGG | 0.589606 | 4.1:+77078872 | None:intergenic |
| TTACGAAGAATTGGCTGCAA+CGG | 0.599308 | 4.1:-77079100 | MS.gene062892:CDS |
| GTTGTGCATTAACTTCGGCA+AGG | 0.604241 | 4.1:+77078287 | None:intergenic |
| CTTGCAAGTATCAGATCTTG+CGG | 0.612917 | 4.1:+77079244 | None:intergenic |
| ATAAATCAAAGGGAACAAGC+AGG | 0.631506 | 4.1:-77078328 | MS.gene062892:CDS |
| GGCTGCAACGGTTATGAATG+TGG | 0.634483 | 4.1:-77079088 | MS.gene062892:CDS |
| TCTGCAACAGATGTCCTGAA+GGG | 0.670452 | 4.1:-77078938 | MS.gene062892:CDS |
| TTAGAAAATCATACTTCACG+AGG | 0.689692 | 4.1:+77080024 | None:intergenic |
| TGCAACGGTTATGAATGTGG+TGG | 0.756086 | 4.1:-77079085 | MS.gene062892:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCATAATAATCATT+AGG | - | chr4.1:77079525-77079544 | MS.gene062892:intron | 10.0% |
| !! | TCATAATTAAATTAATCAAT+GGG | - | chr4.1:77078122-77078141 | MS.gene062892:intron | 10.0% |
| !! | TTCATAATTAAATTAATCAA+TGG | - | chr4.1:77078121-77078140 | MS.gene062892:intron | 10.0% |
| !!! | ATTTACATTTTATAGTAGAT+AGG | - | chr4.1:77077916-77077935 | MS.gene062892:CDS | 15.0% |
| !!! | TGATTGATAGATTTTTTATA+AGG | - | chr4.1:77078520-77078539 | MS.gene062892:intron | 15.0% |
| !!! | TTTTTATTTCTGTTTATTGT+TGG | - | chr4.1:77078743-77078762 | MS.gene062892:intron | 15.0% |
| !! | AAATATATTAGATGAGACTT+AGG | - | chr4.1:77079209-77079228 | MS.gene062892:intron | 20.0% |
| !! | ATCATTAGGAAATAAATCAA+AGG | - | chr4.1:77079539-77079558 | MS.gene062892:intron | 20.0% |
| !! | TCATTAGGAAATAAATCAAA+GGG | - | chr4.1:77079540-77079559 | MS.gene062892:intron | 20.0% |
| !! | TTGCTGAAAATATAAGTTAA+AGG | + | chr4.1:77079487-77079506 | None:intergenic | 20.0% |
| !!! | TTGATAATTTATTTTTGCCA+GGG | - | chr4.1:77079450-77079469 | MS.gene062892:intron | 20.0% |
| !!! | TTTGATAATTTATTTTTGCC+AGG | - | chr4.1:77079449-77079468 | MS.gene062892:intron | 20.0% |
| !!! | TTTGTCATTTTTGCATTAAT+CGG | + | chr4.1:77078089-77078108 | None:intergenic | 20.0% |
| ! | AATCTTTCTTCTCTTGTAAT+TGG | - | chr4.1:77079415-77079434 | MS.gene062892:intron | 25.0% |
| ! | ACAATATTTAACAACGTGAT+CGG | - | chr4.1:77079254-77079273 | MS.gene062892:CDS | 25.0% |
| ! | ATAAAAGCTAATGAGTTCTA+AGG | + | chr4.1:77079736-77079755 | None:intergenic | 25.0% |
| ! | ATAGGTATGTTTCATGATTT+AGG | - | chr4.1:77077934-77077953 | MS.gene062892:CDS | 25.0% |
| ! | CAATAAATGTTTGAGCTTAT+AGG | + | chr4.1:77078172-77078191 | None:intergenic | 25.0% |
| ! | CCTGTAATAATTTCATTTGT+CGG | - | chr4.1:77079659-77079678 | MS.gene062892:intron | 25.0% |
| ! | CTAAGGATAGTATAGATAAA+AGG | + | chr4.1:77079719-77079738 | None:intergenic | 25.0% |
| ! | CTAATTTGACCAAACAATTT+GGG | + | chr4.1:77078054-77078073 | None:intergenic | 25.0% |
| ! | GAAAAAAATTATCACCAAAC+AGG | - | chr4.1:77078232-77078251 | MS.gene062892:intron | 25.0% |
| ! | GTGGTATTATTGATCATAAT+TGG | - | chr4.1:77078477-77078496 | MS.gene062892:intron | 25.0% |
| ! | TTTATTTAAGCTTGATACTG+TGG | - | chr4.1:77078458-77078477 | MS.gene062892:intron | 25.0% |
| !! | ACAAAATTTTGAGCTTATAG+CGG | + | chr4.1:77078296-77078315 | None:intergenic | 25.0% |
| !! | ACTCAATTTTATGTATTAGG+CGG | - | chr4.1:77077957-77077976 | MS.gene062892:intron | 25.0% |
| !! | AGGACTCAATTTTATGTATT+AGG | - | chr4.1:77077954-77077973 | MS.gene062892:intron | 25.0% |
| !! | ATATTTTTCACAAAACCTGA+AGG | + | chr4.1:77079195-77079214 | None:intergenic | 25.0% |
| !! | TTTGTGATGAAAAAGTTGAT+TGG | - | chr4.1:77079364-77079383 | MS.gene062892:intron | 25.0% |
| !!! | ACTTTTTCATCACAAATACA+TGG | + | chr4.1:77079360-77079379 | None:intergenic | 25.0% |
| !!! | TGATAATTTATTTTTGCCAG+GGG | - | chr4.1:77079451-77079470 | MS.gene062892:intron | 25.0% |
| AAACCTGTGATTAATGATGA+AGG | - | chr4.1:77078970-77078989 | MS.gene062892:intron | 30.0% | |
| ACAAATATATTCCTCTTGCA+TGG | + | chr4.1:77078353-77078372 | None:intergenic | 30.0% | |
| ACAGGTTAAATAAAAAGCAG+TGG | + | chr4.1:77079644-77079663 | None:intergenic | 30.0% | |
| ACTACTTTCATTCCTATGTA+TGG | - | chr4.1:77079785-77079804 | MS.gene062892:intron | 30.0% | |
| ATTACACTTGTCACTGAATA+CGG | + | chr4.1:77079129-77079148 | None:intergenic | 30.0% | |
| CAACATTGAACAATACTCAA+AGG | + | chr4.1:77078861-77078880 | None:intergenic | 30.0% | |
| CCGACAAATGAAATTATTAC+AGG | + | chr4.1:77079662-77079681 | None:intergenic | 30.0% | |
| GCTAATTTGACCAAACAATT+TGG | + | chr4.1:77078055-77078074 | None:intergenic | 30.0% | |
| TATATTAGATGAGACTTAGG+AGG | - | chr4.1:77079212-77079231 | MS.gene062892:intron | 30.0% | |
| TCTTAGTTGTGCATTAACTT+CGG | + | chr4.1:77079599-77079618 | None:intergenic | 30.0% | |
| TTAGAAAATCATACTTCACG+AGG | + | chr4.1:77077857-77077876 | None:intergenic | 30.0% | |
| TTGTCACTGTTATAGTCATT+TGG | + | chr4.1:77079238-77079257 | None:intergenic | 30.0% | |
| ! | CTTTGAGTATTGTTCAATGT+TGG | - | chr4.1:77078859-77078878 | MS.gene062892:CDS | 30.0% |
| !!! | GATAATTTATTTTTGCCAGG+GGG | - | chr4.1:77079452-77079471 | MS.gene062892:intron | 30.0% |
| AAACATCCTTGCTTTCAATC+CGG | - | chr4.1:77078593-77078612 | MS.gene062892:intron | 35.0% | |
| AAAGTAGTAACTATCGCACT+TGG | + | chr4.1:77079773-77079792 | None:intergenic | 35.0% | |
| AACTATACAGAAACTGTCCA+TGG | + | chr4.1:77078703-77078722 | None:intergenic | 35.0% | |
| AATACTCAAAGGAGTGAAGA+GGG | + | chr4.1:77078850-77078869 | None:intergenic | 35.0% | |
| AGCACTCAAATTGATGGAAA+TGG | - | chr4.1:77079023-77079042 | MS.gene062892:intron | 35.0% | |
| ATAAATCAAAGGGAACAAGC+AGG | - | chr4.1:77079550-77079569 | MS.gene062892:intron | 35.0% | |
| ATGACTAAGATAGACCTGTT+TGG | + | chr4.1:77078249-77078268 | None:intergenic | 35.0% | |
| ATGATGAAGGAGAGATTTCT+TGG | - | chr4.1:77078983-77079002 | MS.gene062892:intron | 35.0% | |
| ATTAAGCTTAATTCGCCTTC+AGG | - | chr4.1:77079177-77079196 | MS.gene062892:intron | 35.0% | |
| GCAGAAAGATTACGAAGAAT+TGG | - | chr4.1:77078769-77078788 | MS.gene062892:intron | 35.0% | |
| TCTCCTTCATCATTAATCAC+AGG | + | chr4.1:77078976-77078995 | None:intergenic | 35.0% | |
| TCTTGTGGTTAACAAGACTA+AGG | - | chr4.1:77078817-77078836 | MS.gene062892:intron | 35.0% | |
| TTACTATGTACTTGCTTTGC+AGG | - | chr4.1:77078906-77078925 | MS.gene062892:CDS | 35.0% | |
| TTTCATTCCTATGTATGGTC+TGG | - | chr4.1:77079790-77079809 | MS.gene062892:intron | 35.0% | |
| AACATCCTTGCTTTCAATCC+GGG | - | chr4.1:77078594-77078613 | MS.gene062892:intron | 40.0% | |
| AATCTCTGTCAGTGTTTCCA+TGG | - | chr4.1:77078683-77078702 | MS.gene062892:intron | 40.0% | |
| ACCTATACCAAGGCTCAATT+TGG | + | chr4.1:77078323-77078342 | None:intergenic | 40.0% | |
| ATACACACCAGACCATACAT+AGG | + | chr4.1:77079800-77079819 | None:intergenic | 40.0% | |
| ATCTGATACTTGCAAGTCTG+AGG | - | chr4.1:77078641-77078660 | MS.gene062892:intron | 40.0% | |
| CAATACTCAAAGGAGTGAAG+AGG | + | chr4.1:77078851-77078870 | None:intergenic | 40.0% | |
| CATGCTGAACCCAAATTGTT+TGG | - | chr4.1:77078042-77078061 | MS.gene062892:intron | 40.0% | |
| CTTGCAAGTATCAGATCTTG+CGG | + | chr4.1:77078637-77078656 | None:intergenic | 40.0% | |
| GAGCTTGTAACTGAAGATAG+CGG | - | chr4.1:77078008-77078027 | MS.gene062892:intron | 40.0% | |
| GTATGTTGCCTATAATGAGC+AGG | - | chr4.1:77079940-77079959 | MS.gene062892:intron | 40.0% | |
| TAAAGGTCAAAATAACCCCC+TGG | + | chr4.1:77079470-77079489 | None:intergenic | 40.0% | |
| TCCATCAATTTGAGTGCTTG+AGG | + | chr4.1:77079021-77079040 | None:intergenic | 40.0% | |
| TCCTCAAGCACTCAAATTGA+TGG | - | chr4.1:77079017-77079036 | MS.gene062892:intron | 40.0% | |
| TTACGAAGAATTGGCTGCAA+CGG | - | chr4.1:77078778-77078797 | MS.gene062892:intron | 40.0% | |
| TTGAGTGCTTGAGGATCTTT+GGG | + | chr4.1:77079012-77079031 | None:intergenic | 40.0% | |
| TTTGAGTGCTTGAGGATCTT+TGG | + | chr4.1:77079013-77079032 | None:intergenic | 40.0% | |
| !! | TATGAATGTGGTGGATCTTG+TGG | - | chr4.1:77078802-77078821 | MS.gene062892:intron | 40.0% |
| !!! | CAGGTTTTAAAACTCCCTTC+AGG | + | chr4.1:77078957-77078976 | None:intergenic | 40.0% |
| GAGAGATTAGAAGAATGCGC+AGG | + | chr4.1:77079309-77079328 | None:intergenic | 45.0% | |
| GCAAGAGTTGCATGTTTCAC+TGG | - | chr4.1:77079074-77079093 | MS.gene062892:CDS | 45.0% | |
| GCCAAATTGAGCCTTGGTAT+AGG | - | chr4.1:77078319-77078338 | MS.gene062892:CDS | 45.0% | |
| GCCTATAATGAGCAGGCAAA+GGG | - | chr4.1:77079947-77079966 | MS.gene062892:intron | 45.0% | |
| GCTTGAGGCTATGTTGCAAA+AGG | - | chr4.1:77079988-77080007 | MS.gene062892:intron | 45.0% | |
| GTTGTGCATTAACTTCGGCA+AGG | + | chr4.1:77079594-77079613 | None:intergenic | 45.0% | |
| TCCCTTTGCCTGCTCATTAT+AGG | + | chr4.1:77079951-77079970 | None:intergenic | 45.0% | |
| TCTGCAACAGATGTCCTGAA+GGG | - | chr4.1:77078940-77078959 | MS.gene062892:CDS | 45.0% | |
| TGCAACGGTTATGAATGTGG+TGG | - | chr4.1:77078793-77078812 | MS.gene062892:intron | 45.0% | |
| TGCCTATAATGAGCAGGCAA+AGG | - | chr4.1:77079946-77079965 | MS.gene062892:intron | 45.0% | |
| TGGCACATGTACCTATACCA+AGG | + | chr4.1:77078333-77078352 | None:intergenic | 45.0% | |
| !!! | AGTGCGTTTTGAGAGAGAGT+TGG | + | chr4.1:77080032-77080051 | None:intergenic | 45.0% |
| AAGGGAGATGGTGATAAGCC+TGG | - | chr4.1:77079965-77079984 | MS.gene062892:intron | 50.0% | |
| AATGAGCAGGCAAAGGGAGA+TGG | - | chr4.1:77079953-77079972 | MS.gene062892:intron | 50.0% | |
| AGAAGCCCGGATTGAAAGCA+AGG | + | chr4.1:77078602-77078621 | None:intergenic | 50.0% | |
| AGGGAGATGGTGATAAGCCT+GGG | - | chr4.1:77079966-77079985 | MS.gene062892:intron | 50.0% | |
| AGGTACATGTGCCATGCAAG+AGG | - | chr4.1:77078339-77078358 | MS.gene062892:intron | 50.0% | |
| AGTGCTTGAGGATCTTTGGG+AGG | + | chr4.1:77079009-77079028 | None:intergenic | 50.0% | |
| GCTCGTAAGCTAGCTAACAG+TGG | - | chr4.1:77077983-77078002 | MS.gene062892:intron | 50.0% | |
| GGCTGCAACGGTTATGAATG+TGG | - | chr4.1:77078790-77078809 | MS.gene062892:intron | 50.0% | |
| GTCTGCAACAGATGTCCTGA+AGG | - | chr4.1:77078939-77078958 | MS.gene062892:CDS | 50.0% | |
| TGTCTCGCCAAATTGAGCCT+TGG | - | chr4.1:77078313-77078332 | MS.gene062892:CDS | 50.0% | |
| TTGCTTTCAATCCGGGCTTC+TGG | - | chr4.1:77078601-77078620 | MS.gene062892:intron | 50.0% | |
| AAGGGAACAAGCAGGACAGC+TGG | - | chr4.1:77079558-77079577 | MS.gene062892:intron | 55.0% | |
| CAAGCAGGACAGCTGGATGA+AGG | - | chr4.1:77079565-77079584 | MS.gene062892:intron | 55.0% | |
| GCAAGTCGTATCCAGAAGCC+CGG | + | chr4.1:77078615-77078634 | None:intergenic | 55.0% | |
| TGCAACATAGCCTCAAGCCC+AGG | + | chr4.1:77079986-77080005 | None:intergenic | 55.0% | |
| TGGTGATAAGCCTGGGCTTG+AGG | - | chr4.1:77079973-77079992 | MS.gene062892:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 77077836 | 77080064 | 77077836 | ID=MS.gene062892 |
| chr4.1 | mRNA | 77077836 | 77080064 | 77077836 | ID=MS.gene062892.t1;Parent=MS.gene062892 |
| chr4.1 | exon | 77080038 | 77080064 | 77080038 | ID=MS.gene062892.t1.exon1;Parent=MS.gene062892.t1 |
| chr4.1 | CDS | 77080038 | 77080064 | 77080038 | ID=cds.MS.gene062892.t1;Parent=MS.gene062892.t1 |
| chr4.1 | exon | 77079229 | 77079327 | 77079229 | ID=MS.gene062892.t1.exon2;Parent=MS.gene062892.t1 |
| chr4.1 | CDS | 77079229 | 77079327 | 77079229 | ID=cds.MS.gene062892.t1;Parent=MS.gene062892.t1 |
| chr4.1 | exon | 77079062 | 77079127 | 77079062 | ID=MS.gene062892.t1.exon3;Parent=MS.gene062892.t1 |
| chr4.1 | CDS | 77079062 | 77079127 | 77079062 | ID=cds.MS.gene062892.t1;Parent=MS.gene062892.t1 |
| chr4.1 | exon | 77078856 | 77078972 | 77078856 | ID=MS.gene062892.t1.exon4;Parent=MS.gene062892.t1 |
| chr4.1 | CDS | 77078856 | 77078972 | 77078856 | ID=cds.MS.gene062892.t1;Parent=MS.gene062892.t1 |
| chr4.1 | exon | 77078279 | 77078353 | 77078279 | ID=MS.gene062892.t1.exon5;Parent=MS.gene062892.t1 |
| chr4.1 | CDS | 77078279 | 77078353 | 77078279 | ID=cds.MS.gene062892.t1;Parent=MS.gene062892.t1 |
| chr4.1 | exon | 77077836 | 77077968 | 77077836 | ID=MS.gene062892.t1.exon6;Parent=MS.gene062892.t1 |
| chr4.1 | CDS | 77077836 | 77077968 | 77077836 | ID=cds.MS.gene062892.t1;Parent=MS.gene062892.t1 |
| Gene Sequence |
| Protein sequence |
