Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49694.t1 | XP_003630302.1 | 98.3 | 727 | 12 | 0 | 1 | 727 | 1 | 727 | 0.00E+00 | 1411.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49694.t1 | Q31KG6 | 69.3 | 622 | 190 | 1 | 74 | 694 | 4 | 625 | 1.2e-254 | 880.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49694.t1 | G7LE56 | 98.3 | 727 | 12 | 0 | 1 | 727 | 1 | 727 | 0.0e+00 | 1411.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49694 | 0.822103 | 2.83E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene49694 | 0.826096 | 3.27E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene49694 | 0.845244 | 4.58E-59 | -1.69E-46 |
| MS.gene049232 | MS.gene49694 | 0.844358 | 7.95E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene49694 | 0.863203 | 2.94E-64 | -1.69E-46 |
| MS.gene049320 | MS.gene49694 | 0.852038 | 6.00E-61 | -1.69E-46 |
| MS.gene049627 | MS.gene49694 | 0.856213 | 3.75E-62 | -1.69E-46 |
| MS.gene049633 | MS.gene49694 | 0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene049865 | MS.gene49694 | 0.830802 | 2.39E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene49694 | 0.837577 | 4.79E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene49694 | 0.84556 | 3.76E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene49694 | 0.853392 | 2.46E-61 | -1.69E-46 |
| MS.gene050170 | MS.gene49694 | 0.817865 | 2.64E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene49694 | 0.838274 | 3.17E-57 | -1.69E-46 |
| MS.gene050333 | MS.gene49694 | 0.866974 | 1.93E-65 | -1.69E-46 |
| MS.gene050496 | MS.gene49694 | 0.814417 | 1.56E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene49694 | 0.869801 | 2.36E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene49694 | 0.877558 | 5.71E-69 | -1.69E-46 |
| MS.gene050577 | MS.gene49694 | 0.84487 | 5.78E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene49694 | 0.861359 | 1.08E-63 | -1.69E-46 |
| MS.gene050675 | MS.gene49694 | 0.835521 | 1.60E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene49694 | 0.844996 | 5.35E-59 | -1.69E-46 |
| MS.gene050747 | MS.gene49694 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene49694 | 0.824372 | 8.37E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene49694 | 0.815328 | 9.78E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene49694 | 0.815826 | 7.58E-52 | -1.69E-46 |
| MS.gene050876 | MS.gene49694 | 0.873174 | 1.80E-67 | -1.69E-46 |
| MS.gene05087 | MS.gene49694 | 0.856029 | 4.24E-62 | -1.69E-46 |
| MS.gene050883 | MS.gene49694 | -0.806247 | 9.03E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene49694 | 0.84479 | 6.08E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene49694 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene49694 | 0.853502 | 2.29E-61 | -1.69E-46 |
| MS.gene051317 | MS.gene49694 | 0.866658 | 2.43E-65 | -1.69E-46 |
| MS.gene051551 | MS.gene49694 | 0.804647 | 1.95E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene49694 | 0.811624 | 6.38E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene49694 | 0.850179 | 2.01E-60 | -1.69E-46 |
| MS.gene052486 | MS.gene49694 | 0.866825 | 2.15E-65 | -1.69E-46 |
| MS.gene052916 | MS.gene49694 | 0.811789 | 5.87E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene49694 | 0.82172 | 3.47E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene49694 | 0.821673 | 3.56E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene49694 | 0.83197 | 1.23E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene49694 | 0.836629 | 8.37E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene49694 | 0.817641 | 2.97E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene49694 | 0.802595 | 5.21E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene49694 | 0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene054374 | MS.gene49694 | 0.805529 | 1.28E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene49694 | 0.803841 | 2.88E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene49694 | 0.809146 | 2.19E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene49694 | 0.864632 | 1.06E-64 | -1.69E-46 |
| MS.gene054642 | MS.gene49694 | 0.839133 | 1.90E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene49694 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene49694 | 0.867203 | 1.63E-65 | -1.69E-46 |
| MS.gene055154 | MS.gene49694 | -0.807794 | 4.25E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene49694 | 0.845089 | 5.05E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene49694 | 0.853981 | 1.67E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene49694 | 0.845795 | 3.25E-59 | -1.69E-46 |
| MS.gene055634 | MS.gene49694 | 0.8568 | 2.52E-62 | -1.69E-46 |
| MS.gene055636 | MS.gene49694 | 0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene055638 | MS.gene49694 | 0.828326 | 9.57E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene49694 | 0.829407 | 5.24E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene49694 | 0.844604 | 6.82E-59 | -1.69E-46 |
| MS.gene055751 | MS.gene49694 | 0.843807 | 1.12E-58 | -1.69E-46 |
| MS.gene055776 | MS.gene49694 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene055849 | MS.gene49694 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene49694 | 0.819727 | 9.98E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene49694 | -0.801091 | 1.06E-48 | -1.69E-46 |
| MS.gene056409 | MS.gene49694 | 0.830263 | 3.24E-55 | -1.69E-46 |
| MS.gene056450 | MS.gene49694 | 0.825272 | 5.13E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene49694 | 0.844672 | 6.54E-59 | -1.69E-46 |
| MS.gene056510 | MS.gene49694 | 0.853181 | 2.83E-61 | -1.69E-46 |
| MS.gene056549 | MS.gene49694 | 0.842368 | 2.70E-58 | -1.69E-46 |
| MS.gene056610 | MS.gene49694 | 0.827705 | 1.35E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene49694 | 0.848266 | 6.84E-60 | -1.69E-46 |
| MS.gene056692 | MS.gene49694 | 0.870868 | 1.05E-66 | -1.69E-46 |
| MS.gene056898 | MS.gene49694 | 0.803511 | 3.37E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene49694 | 0.846895 | 1.63E-59 | -1.69E-46 |
| MS.gene057872 | MS.gene49694 | 0.811739 | 6.02E-51 | -1.69E-46 |
| MS.gene058111 | MS.gene49694 | -0.817924 | 2.56E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene49694 | 0.842054 | 3.27E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene49694 | 0.842553 | 2.41E-58 | -1.69E-46 |
| MS.gene05841 | MS.gene49694 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene058719 | MS.gene49694 | 0.825233 | 5.24E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene49694 | 0.858408 | 8.41E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene49694 | 0.856519 | 3.05E-62 | -1.69E-46 |
| MS.gene059023 | MS.gene49694 | 0.833032 | 6.73E-56 | -1.69E-46 |
| MS.gene059079 | MS.gene49694 | 0.835753 | 1.40E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene49694 | 0.848421 | 6.20E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene49694 | 0.842713 | 2.19E-58 | -1.69E-46 |
| MS.gene059756 | MS.gene49694 | 0.824475 | 7.91E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene49694 | 0.83705 | 6.53E-57 | -1.69E-46 |
| MS.gene059837 | MS.gene49694 | 0.80653 | 7.87E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene49694 | 0.837634 | 4.63E-57 | -1.69E-46 |
| MS.gene060595 | MS.gene49694 | -0.818081 | 2.36E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene49694 | 0.855214 | 7.33E-62 | -1.69E-46 |
| MS.gene060762 | MS.gene49694 | 0.853781 | 1.90E-61 | -1.69E-46 |
| MS.gene060778 | MS.gene49694 | 0.816207 | 6.23E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene49694 | 0.884692 | 1.54E-71 | -1.69E-46 |
| MS.gene060823 | MS.gene49694 | -0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene49694 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene49694 | 0.862393 | 5.23E-64 | -1.69E-46 |
| MS.gene061134 | MS.gene49694 | 0.807589 | 4.69E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene49694 | 0.832807 | 7.66E-56 | -1.69E-46 |
| MS.gene061171 | MS.gene49694 | 0.81736 | 3.43E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49694.t1 | MTR_8g094030 | 98.349 | 727 | 12 | 0 | 1 | 727 | 1 | 727 | 0.0 | 1482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49694.t1 | AT2G13440 | 86.349 | 630 | 84 | 1 | 77 | 704 | 73 | 702 | 0.0 | 1145 |
Find 186 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTCCAGGGCATTATTTC+TGG | 0.116393 | 4.4:-8175097 | MS.gene49694:intron |
| GTGCTTCTCACCAGATAATT+AGG | 0.169265 | 4.4:-8177791 | MS.gene49694:CDS |
| TTGAAAAGTGTCAAAATTTC+AGG | 0.172651 | 4.4:-8174691 | MS.gene49694:intron |
| TTCTTCTCGGGTCAGATAAA+TGG | 0.202098 | 4.4:-8175317 | MS.gene49694:CDS |
| ACTCCTTTGGGTCGTGAAAT+TGG | 0.211572 | 4.4:-8174784 | MS.gene49694:CDS |
| TCCTTGAGCTTTCCTCCTTT+TGG | 0.212482 | 4.4:+8172820 | None:intergenic |
| TGCTCTTGCTTCTGCACGTT+TGG | 0.233878 | 4.4:-8180678 | MS.gene49694:CDS |
| GAAACTGATCGGCTGAAAAC+TGG | 0.282682 | 4.4:-8178419 | MS.gene49694:CDS |
| GAAACACACCTTATCTTCTA+TGG | 0.287758 | 4.4:+8177701 | None:intergenic |
| TATCTCATTAGGAGGGGATT+TGG | 0.309038 | 4.4:-8173819 | MS.gene49694:intron |
| ACATCTGTTCTCTTTCAATA+TGG | 0.316185 | 4.4:+8177838 | None:intergenic |
| TTGCATGAAACGCCCACTTA+TGG | 0.316964 | 4.4:-8177762 | MS.gene49694:CDS |
| TTCTTACTCTCAACATTGAT+AGG | 0.323466 | 4.4:-8180640 | MS.gene49694:CDS |
| CATGGTCACTGATATCTTAC+TGG | 0.330595 | 4.4:-8178630 | MS.gene49694:CDS |
| GCATAGTAATCTAGGTCTTC+AGG | 0.334074 | 4.4:+8173416 | None:intergenic |
| GCTCTTGCTTCTGCACGTTT+GGG | 0.340555 | 4.4:-8180677 | MS.gene49694:CDS |
| CTTCTTGATAAACATGGTTT+TGG | 0.343400 | 4.4:-8173707 | MS.gene49694:CDS |
| TGAACGAGCTGGGACTTTGC+AGG | 0.343602 | 4.4:+8180152 | None:intergenic |
| TGATAGCCGTCTCACTCCTT+TGG | 0.343963 | 4.4:-8174797 | MS.gene49694:CDS |
| GCAAGTTATCCCTAATTATC+TGG | 0.347566 | 4.4:+8177781 | None:intergenic |
| GCAGGTTTGGATTATGAATT+CGG | 0.352987 | 4.4:-8180755 | MS.gene49694:intron |
| TACGTGCTCAGACTGATAAA+AGG | 0.360569 | 4.4:-8179242 | MS.gene49694:CDS |
| AAGAAACCGCACGTACAATA+TGG | 0.364035 | 4.4:-8173731 | MS.gene49694:CDS |
| CATTGATAGGATTGCGTGGC+AGG | 0.371615 | 4.4:-8180627 | MS.gene49694:intron |
| CCTTTGCTGAGAACTTTGCC+TGG | 0.379636 | 4.4:-8175446 | MS.gene49694:CDS |
| ATTCGGACTGTAGATTTCTC+TGG | 0.385158 | 4.4:-8178377 | MS.gene49694:CDS |
| GATAGCCGTCTCACTCCTTT+GGG | 0.391537 | 4.4:-8174796 | MS.gene49694:CDS |
| ATCTTATAGGGGTTCTCAAC+CGG | 0.395502 | 4.4:-8175491 | MS.gene49694:intron |
| TGACAAGAATTTATCGAGAA+TGG | 0.395744 | 4.4:-8173684 | MS.gene49694:CDS |
| AGGGCAGTATCTAGGTCCTT+TGG | 0.399442 | 4.4:+8177725 | None:intergenic |
| AAACTTCAGGCTCCTCATCT+TGG | 0.401204 | 4.4:+8172756 | None:intergenic |
| TGCTTCTCACCAGATAATTA+GGG | 0.403454 | 4.4:-8177790 | MS.gene49694:CDS |
| CGTGAAATTGGATTGATAGA+TGG | 0.407344 | 4.4:-8174772 | MS.gene49694:CDS |
| AATTAGTAGTGCAGTGATAT+CGG | 0.413156 | 4.4:+8172853 | None:intergenic |
| TTCAACCCATCCTCCATAAG+TGG | 0.414051 | 4.4:+8177749 | None:intergenic |
| TTATCATTGCATAGTAATCT+AGG | 0.416539 | 4.4:+8173408 | None:intergenic |
| TCTCTTTCAATATGGACATC+TGG | 0.418435 | 4.4:+8177846 | None:intergenic |
| GTTTCAGTCAAAGAAACTTC+AGG | 0.419087 | 4.4:+8172743 | None:intergenic |
| TCATCAAATATTTCTTGAAC+CGG | 0.420952 | 4.4:-8176171 | MS.gene49694:CDS |
| GGAGAAAGTGGAGGCGGAAA+AGG | 0.426066 | 4.4:+8180898 | None:intergenic |
| GACTCGCCAGCTCTTCCTGC+GGG | 0.426682 | 4.4:+8178485 | None:intergenic |
| ATCTTGGGTATTAGCTTGAA+TGG | 0.427478 | 4.4:+8172772 | None:intergenic |
| TTGACTGAAACAGCTAGATC+TGG | 0.429758 | 4.4:-8172731 | MS.gene49694:CDS |
| AGGACCTGCGAGAGCCTTAC+CGG | 0.431505 | 4.4:-8174979 | MS.gene49694:CDS |
| AAGCACTAGTAGTACGAGTT+AGG | 0.437053 | 4.4:+8177808 | None:intergenic |
| GCCTCTCGAATAGAAAGGTT+TGG | 0.437247 | 4.4:+8178653 | None:intergenic |
| GTACGTGCGGTTTCTTAAGA+AGG | 0.438771 | 4.4:+8173738 | None:intergenic |
| CGTGTACTCAATTCTTCAAA+AGG | 0.443291 | 4.4:-8179282 | MS.gene49694:CDS |
| TTCGTAATTGGCAGGTCAGC+TGG | 0.443773 | 4.4:-8177881 | MS.gene49694:intron |
| TCAGCAAAGCCAACTTCAAC+AGG | 0.445803 | 4.4:-8173612 | MS.gene49694:intron |
| GTAAGGCTCTCGCAGGTCCT+TGG | 0.446878 | 4.4:+8174982 | None:intergenic |
| GACCTAGAGCATTGATGAGC+AGG | 0.447046 | 4.4:+8175368 | None:intergenic |
| GAGTTGTACGTCGGAAATTG+AGG | 0.447678 | 4.4:+8180933 | None:intergenic |
| CTGCCCTTCCATAGAAGATA+AGG | 0.448701 | 4.4:-8177709 | MS.gene49694:intron |
| CTCCAGCCCGAGTGGACATT+CGG | 0.448948 | 4.4:-8178394 | MS.gene49694:CDS |
| CTCGCCTGACCAATGGTTTG+AGG | 0.449157 | 4.4:+8172899 | None:intergenic |
| AACTTCAGGCTCCTCATCTT+GGG | 0.449927 | 4.4:+8172757 | None:intergenic |
| ATACAAGGATTGTTCTTCTC+GGG | 0.451776 | 4.4:-8175329 | MS.gene49694:CDS |
| TGATAAAAGGGAATATGCTT+TGG | 0.457766 | 4.4:-8179229 | MS.gene49694:CDS |
| AATACAAGGATTGTTCTTCT+CGG | 0.458517 | 4.4:-8175330 | MS.gene49694:CDS |
| TTTGATGAGACTCTTTGTCT+TGG | 0.460619 | 4.4:+8176186 | None:intergenic |
| TTTGCAGGCGCACCAACTGC+TGG | 0.468066 | 4.4:+8180167 | None:intergenic |
| CTGTAGTCTCTCAGGCAAAC+CGG | 0.472181 | 4.4:+8175472 | None:intergenic |
| CTTACTTGCACATAGAGTTC+AGG | 0.473805 | 4.4:+8176134 | None:intergenic |
| AAAGGCAACTGTAGTCTCTC+AGG | 0.474416 | 4.4:+8175464 | None:intergenic |
| ACATAGGGAAAATTGCTGAT+AGG | 0.475287 | 4.4:-8180106 | MS.gene49694:intron |
| CTATGAAGAAGCTGCAGCAC+AGG | 0.479361 | 4.4:-8175285 | MS.gene49694:intron |
| CGTACCTCGGGAGGAGGAAG+CGG | 0.480416 | 4.4:+8180853 | None:intergenic |
| AAATATGATGTGATTGTAGT+TGG | 0.484063 | 4.4:-8180725 | MS.gene49694:CDS |
| TAATCTAGGTCTTCAGGAAG+TGG | 0.485197 | 4.4:+8173422 | None:intergenic |
| GAGAGAGAGAGCAGTTACAT+AGG | 0.486318 | 4.4:-8175028 | MS.gene49694:CDS |
| TAGGTTAGGCCTCAAACCAT+TGG | 0.494962 | 4.4:-8172908 | MS.gene49694:CDS |
| ACTGAGAACTTACAGCAACT+TGG | 0.495886 | 4.4:-8178446 | MS.gene49694:CDS |
| GCTGAAATTACTGTTATGTC+TGG | 0.496108 | 4.4:-8173794 | MS.gene49694:CDS |
| AGGGTAGAAAAGAGTGATAG+AGG | 0.497245 | 4.4:+8180961 | None:intergenic |
| AAATCCGAGCCTGCTTCTCC+TGG | 0.498604 | 4.4:+8174731 | None:intergenic |
| GTCCGAATGTCCACTCGGGC+TGG | 0.501377 | 4.4:+8178392 | None:intergenic |
| TCTATGGAAGGGCAGTATCT+AGG | 0.501684 | 4.4:+8177717 | None:intergenic |
| CTACAGTCCGAATGTCCACT+CGG | 0.501786 | 4.4:+8178387 | None:intergenic |
| CCTTTCTATTCGAGAGGCCA+TGG | 0.501995 | 4.4:-8178648 | MS.gene49694:CDS |
| AGTAGTGCAGTGATATCGGC+AGG | 0.502517 | 4.4:+8172857 | None:intergenic |
| TCTATGCCCGCAGGAAGAGC+TGG | 0.503354 | 4.4:-8178491 | MS.gene49694:CDS |
| GAAATTGTACCAGGAGAAGC+AGG | 0.506810 | 4.4:-8174740 | MS.gene49694:CDS |
| TAGGCCTCAAACCATTGGTC+AGG | 0.506876 | 4.4:-8172903 | MS.gene49694:CDS |
| GGAGAACCGACGGGAGAAAG+TGG | 0.512205 | 4.4:+8180886 | None:intergenic |
| ACGTGCTCAGACTGATAAAA+GGG | 0.516334 | 4.4:-8179241 | MS.gene49694:CDS |
| GCACCAACTGCTGGATTACA+AGG | 0.519691 | 4.4:+8180176 | None:intergenic |
| GATTGATAGATGGTAGGCGT+TGG | 0.521496 | 4.4:-8174762 | MS.gene49694:CDS |
| AAAAGAGTGATAGAGGAAGT+AGG | 0.522314 | 4.4:+8180968 | None:intergenic |
| ACCTCTTCATCTCCATGTTG+AGG | 0.522784 | 4.4:+8178347 | None:intergenic |
| GTCCCAGCTCGTTCATGAAG+TGG | 0.523005 | 4.4:-8180144 | MS.gene49694:CDS |
| AACTATCGTACCTCGGGAGG+AGG | 0.524540 | 4.4:+8180847 | None:intergenic |
| TACTCTGCTCGCCTGACCAA+TGG | 0.524690 | 4.4:+8172892 | None:intergenic |
| AAACGCCCACTTATGGAGGA+TGG | 0.525613 | 4.4:-8177755 | MS.gene49694:CDS |
| CCGCCTCCACTTTCTCCCGT+CGG | 0.528792 | 4.4:-8180892 | MS.gene49694:CDS |
| ATGGTCACTGATATCTTACT+GGG | 0.533339 | 4.4:-8178629 | MS.gene49694:CDS |
| GGTCAGATAAATGGAACTAC+AGG | 0.534465 | 4.4:-8175308 | MS.gene49694:CDS |
| ATCCACTTCATGAACGAGCT+GGG | 0.534831 | 4.4:+8180142 | None:intergenic |
| TTGAAAACTGTTCAATGTTG+AGG | 0.535553 | 4.4:-8175421 | MS.gene49694:CDS |
| TCATATTCCACAGCATATGC+AGG | 0.537782 | 4.4:+8175398 | None:intergenic |
| ACGGACATACCTGTTGAAGT+TGG | 0.538267 | 4.4:+8173603 | None:intergenic |
| CATCCACTTCATGAACGAGC+TGG | 0.538832 | 4.4:+8180141 | None:intergenic |
| GCACGTAAAGCACGAACTGC+AGG | 0.542126 | 4.4:+8179258 | None:intergenic |
| AAGCGTACCTTGTTAACATC+CGG | 0.542728 | 4.4:+8174960 | None:intergenic |
| TAATTGAGCTCGAAGCCAAA+AGG | 0.543734 | 4.4:-8172835 | MS.gene49694:CDS |
| TCAGGCACGTCTCGACCCTC+CGG | 0.548297 | 4.4:+8176152 | None:intergenic |
| CAGCCTTGTAATCCAGCAGT+TGG | 0.549194 | 4.4:-8180179 | MS.gene49694:CDS |
| TCAAATATTTCTTGAACCGG+AGG | 0.549373 | 4.4:-8176168 | MS.gene49694:CDS |
| GGAGGAAGCGGATGCGACGG+TGG | 0.552040 | 4.4:+8180865 | None:intergenic |
| GATGCGCTTGGTGGTGACAT+AGG | 0.552977 | 4.4:-8180122 | MS.gene49694:CDS |
| ATGAGTGGTAAAATATGGGT+TGG | 0.553295 | 4.4:-8178521 | MS.gene49694:CDS |
| CGAGAGAAATGCAGAGTGAA+CGG | 0.556676 | 4.4:+8181022 | None:intergenic |
| ATTGGTCAGGCGAGCAGAGT+AGG | 0.562350 | 4.4:-8172890 | MS.gene49694:CDS |
| TACCTTGTTAACATCCGGTA+AGG | 0.563074 | 4.4:+8174965 | None:intergenic |
| CTTATGACTAAGAAAATACA+AGG | 0.563517 | 4.4:-8175344 | MS.gene49694:CDS |
| GAAATTGATATTAAGTACGA+AGG | 0.565120 | 4.4:-8173647 | MS.gene49694:CDS |
| GGAGGAGGAAGCGGATGCGA+CGG | 0.568114 | 4.4:+8180862 | None:intergenic |
| CATGAAGTGGATGCGCTTGG+TGG | 0.569445 | 4.4:-8180131 | MS.gene49694:CDS |
| TAGGCGTTGGAAATTGTACC+AGG | 0.570285 | 4.4:-8174749 | MS.gene49694:CDS |
| CGTCGGAAATTGAGGGAAGG+AGG | 0.571164 | 4.4:+8180941 | None:intergenic |
| AGTTGTACGTCGGAAATTGA+GGG | 0.572454 | 4.4:+8180934 | None:intergenic |
| CACACCTTATCTTCTATGGA+AGG | 0.572859 | 4.4:+8177705 | None:intergenic |
| CCATGGCCTCTCGAATAGAA+AGG | 0.572941 | 4.4:+8178648 | None:intergenic |
| TATTTAGCCGCTCAGAGCAT+CGG | 0.576158 | 4.4:-8174843 | MS.gene49694:intron |
| CCCGTGGTGAGAATGACTGA+TGG | 0.577256 | 4.4:+8178551 | None:intergenic |
| AGACTCGCCAGCTCTTCCTG+CGG | 0.577872 | 4.4:+8178484 | None:intergenic |
| TGTACCAGGAGAAGCAGGCT+CGG | 0.581258 | 4.4:-8174735 | MS.gene49694:CDS |
| ACCTCAACATGGAGATGAAG+AGG | 0.581421 | 4.4:-8178348 | MS.gene49694:intron |
| GTCAGGCGAGCAGAGTAGGT+GGG | 0.582607 | 4.4:-8172886 | MS.gene49694:CDS |
| CATGAAACGCCCACTTATGG+AGG | 0.583933 | 4.4:-8177759 | MS.gene49694:CDS |
| CCGACGGGAGAAAGTGGAGG+CGG | 0.584264 | 4.4:+8180892 | None:intergenic |
| ATGCGACGGTGGAGAACCGA+CGG | 0.588744 | 4.4:+8180876 | None:intergenic |
| CCATCAGTCATTCTCACCAC+GGG | 0.588790 | 4.4:-8178551 | MS.gene49694:CDS |
| TCCAAACCTTTCTATTCGAG+AGG | 0.588800 | 4.4:-8178654 | MS.gene49694:CDS |
| CCAGGCAAAGTTCTCAGCAA+AGG | 0.594246 | 4.4:+8175446 | None:intergenic |
| ATGCGCTTGGTGGTGACATA+GGG | 0.595667 | 4.4:-8180121 | MS.gene49694:CDS |
| TACCTGCTCATCAATGCTCT+AGG | 0.597099 | 4.4:-8175370 | MS.gene49694:CDS |
| TCAGGCGAGCAGAGTAGGTG+GGG | 0.598429 | 4.4:-8172885 | MS.gene49694:CDS |
| GTTCATGAAGTGGATGCGCT+TGG | 0.598895 | 4.4:-8180134 | MS.gene49694:CDS |
| GGTCAGGCGAGCAGAGTAGG+TGG | 0.602163 | 4.4:-8172887 | MS.gene49694:CDS |
| AACTGGAACTCCAGCCCGAG+TGG | 0.606428 | 4.4:-8178402 | MS.gene49694:CDS |
| TATGGACTTCTTGATAAACA+TGG | 0.607676 | 4.4:-8173713 | MS.gene49694:CDS |
| ACATCCGGTAAGGCTCTCGC+AGG | 0.608313 | 4.4:+8174975 | None:intergenic |
| AACGCCCACTTATGGAGGAT+GGG | 0.608525 | 4.4:-8177754 | MS.gene49694:CDS |
| GGTAGAACTTCTATGCCCGC+AGG | 0.609760 | 4.4:-8178500 | MS.gene49694:CDS |
| GCTGGCGAGTCTGCTTCACA+TGG | 0.610955 | 4.4:-8178473 | MS.gene49694:CDS |
| CAAATATTTCTTGAACCGGA+GGG | 0.614402 | 4.4:-8176167 | MS.gene49694:CDS |
| TCAACCCATCCTCCATAAGT+GGG | 0.617248 | 4.4:+8177750 | None:intergenic |
| GATGTGATTGTAGTTGGAGG+AGG | 0.617335 | 4.4:-8180719 | MS.gene49694:CDS |
| AGCCTTACCGGATGTTAACA+AGG | 0.617788 | 4.4:-8174967 | MS.gene49694:intron |
| GCCAAAAGGAGGAAAGCTCA+AGG | 0.618296 | 4.4:-8172821 | MS.gene49694:CDS |
| AGTGAACGGCAACGTTGACA+TGG | 0.619379 | 4.4:+8181036 | None:intergenic |
| GTCGGAAATTGAGGGAAGGA+GGG | 0.622226 | 4.4:+8180942 | None:intergenic |
| ACCACTCATAAAAGTTCCCG+TGG | 0.623171 | 4.4:+8178535 | None:intergenic |
| AAATTGGATTGATAGATGGT+AGG | 0.623924 | 4.4:-8174768 | MS.gene49694:CDS |
| CAGTAAGATATCAGTGACCA+TGG | 0.625171 | 4.4:+8178631 | None:intergenic |
| AGAAGTCCATATTGTACGTG+CGG | 0.626129 | 4.4:+8173725 | None:intergenic |
| GGAAACTATCGTACCTCGGG+AGG | 0.628169 | 4.4:+8180844 | None:intergenic |
| TATGATGTGATTGTAGTTGG+AGG | 0.629455 | 4.4:-8180722 | MS.gene49694:CDS |
| ACACCTTATCTTCTATGGAA+GGG | 0.630410 | 4.4:+8177706 | None:intergenic |
| AATCCAATTTCACGACCCAA+AGG | 0.632364 | 4.4:+8174781 | None:intergenic |
| GGAGGATGGGTTGAAGCCAA+AGG | 0.635736 | 4.4:-8177741 | MS.gene49694:CDS |
| GAAGCAGGCTCGGATTTCTG+AGG | 0.639153 | 4.4:-8174725 | MS.gene49694:CDS |
| ATTTCCGACGTACAACTCGC+CGG | 0.639302 | 4.4:-8180928 | MS.gene49694:CDS |
| TACAGTCCGAATGTCCACTC+GGG | 0.642947 | 4.4:+8178388 | None:intergenic |
| TTGAGCTCGAAGCCAAAAGG+AGG | 0.647774 | 4.4:-8172832 | MS.gene49694:CDS |
| GTAGTTGGAGGAGGACACGC+TGG | 0.648135 | 4.4:-8180710 | MS.gene49694:CDS |
| TCAAGCTAATACCCAAGATG+AGG | 0.648293 | 4.4:-8172768 | MS.gene49694:CDS |
| GGAAAGCTCAAGGACAGAGG+AGG | 0.648717 | 4.4:-8172811 | MS.gene49694:CDS |
| TCTGGATTAGAACCTCAACA+TGG | 0.649563 | 4.4:-8178359 | MS.gene49694:CDS |
| GAACCGACGGGAGAAAGTGG+AGG | 0.651104 | 4.4:+8180889 | None:intergenic |
| CACGACCCAAAGGAGTGAGA+CGG | 0.651338 | 4.4:+8174791 | None:intergenic |
| GGAGGAAAGCTCAAGGACAG+AGG | 0.651565 | 4.4:-8172814 | MS.gene49694:CDS |
| AACGCTGCTAGACATGCAGA+TGG | 0.655157 | 4.4:-8175070 | MS.gene49694:CDS |
| TCCATCAGTCATTCTCACCA+CGG | 0.656267 | 4.4:-8178552 | MS.gene49694:CDS |
| TGCGACGGTGGAGAACCGAC+GGG | 0.663971 | 4.4:+8180877 | None:intergenic |
| GTACGTCGGAAATTGAGGGA+AGG | 0.676048 | 4.4:+8180938 | None:intergenic |
| GCATCCGCTTCCTCCTCCCG+AGG | 0.682837 | 4.4:-8180857 | MS.gene49694:intron |
| AATTGATGATCTAGTCACCA+AGG | 0.684915 | 4.4:-8174999 | MS.gene49694:CDS |
| TCAACATTGATAGGATTGCG+TGG | 0.690020 | 4.4:-8180631 | MS.gene49694:CDS |
| GTTGAGGCCTGCATATGCTG+TGG | 0.690407 | 4.4:-8175405 | MS.gene49694:CDS |
| GGGAAGAATGACAATGTGGA+AGG | 0.698671 | 4.4:-8178608 | MS.gene49694:CDS |
| GTAGTGCAGTGATATCGGCA+GGG | 0.708746 | 4.4:+8172858 | None:intergenic |
| AAAGTAACCGATGCTCTGAG+CGG | 0.714631 | 4.4:+8174836 | None:intergenic |
| ACTGGGGAAGAATGACAATG+TGG | 0.726022 | 4.4:-8178612 | MS.gene49694:CDS |
| TGGTCACTGATATCTTACTG+GGG | 0.750479 | 4.4:-8178628 | MS.gene49694:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8172727 | 8181056 | 8172727 | ID=MS.gene49694 |
| chr4.4 | mRNA | 8172727 | 8181056 | 8172727 | ID=MS.gene49694.t1;Parent=MS.gene49694 |
| chr4.4 | exon | 8180858 | 8181056 | 8180858 | ID=MS.gene49694.t1.exon1;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8180858 | 8181056 | 8180858 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8180628 | 8180773 | 8180628 | ID=MS.gene49694.t1.exon2;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8180628 | 8180773 | 8180628 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8180107 | 8180198 | 8180107 | ID=MS.gene49694.t1.exon3;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8180107 | 8180198 | 8180107 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8179207 | 8179320 | 8179207 | ID=MS.gene49694.t1.exon4;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8179207 | 8179320 | 8179207 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8178349 | 8178679 | 8178349 | ID=MS.gene49694.t1.exon5;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8178349 | 8178679 | 8178349 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8177710 | 8177889 | 8177710 | ID=MS.gene49694.t1.exon6;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8177710 | 8177889 | 8177710 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8176139 | 8176219 | 8176139 | ID=MS.gene49694.t1.exon7;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8176139 | 8176219 | 8176139 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8175286 | 8175504 | 8175286 | ID=MS.gene49694.t1.exon8;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8175286 | 8175504 | 8175286 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8174968 | 8175110 | 8174968 | ID=MS.gene49694.t1.exon9;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8174968 | 8175110 | 8174968 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8174692 | 8174858 | 8174692 | ID=MS.gene49694.t1.exon10;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8174692 | 8174858 | 8174692 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8173613 | 8173830 | 8173613 | ID=MS.gene49694.t1.exon11;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8173613 | 8173830 | 8173613 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8173373 | 8173465 | 8173373 | ID=MS.gene49694.t1.exon12;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8173373 | 8173465 | 8173373 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| chr4.4 | exon | 8172727 | 8172927 | 8172727 | ID=MS.gene49694.t1.exon13;Parent=MS.gene49694.t1 |
| chr4.4 | CDS | 8172727 | 8172927 | 8172727 | ID=cds.MS.gene49694.t1;Parent=MS.gene49694.t1 |
| Gene Sequence |
| Protein sequence |
