Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50226.t1 | XP_003615834.1 | 96 | 403 | 13 | 1 | 1 | 403 | 1 | 400 | 1.40E-203 | 718.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50226.t1 | Q8L774 | 63.2 | 402 | 134 | 2 | 1 | 402 | 1 | 388 | 1.4e-146 | 520.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50226.t1 | G7KEE1 | 96.0 | 403 | 13 | 1 | 1 | 403 | 1 | 400 | 1.0e-203 | 718.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene50226 | 0.846722 | 1.82E-59 | -1.69E-46 |
| MS.gene049170 | MS.gene50226 | 0.846374 | 2.26E-59 | -1.69E-46 |
| MS.gene049257 | MS.gene50226 | 0.806807 | 6.88E-50 | -1.69E-46 |
| MS.gene049284 | MS.gene50226 | 0.811066 | 8.43E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene50226 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene50226 | 0.819511 | 1.12E-52 | -1.69E-46 |
| MS.gene049488 | MS.gene50226 | 0.835743 | 1.40E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene50226 | 0.804163 | 2.46E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene50226 | 0.830025 | 3.71E-55 | -1.69E-46 |
| MS.gene050060 | MS.gene50226 | 0.821691 | 3.53E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene50226 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene050400 | MS.gene50226 | 0.823455 | 1.37E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene50226 | -0.86293 | 3.57E-64 | -1.69E-46 |
| MS.gene050464 | MS.gene50226 | 0.812349 | 4.43E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene50226 | 0.830036 | 3.68E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene50226 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene50226 | 0.881378 | 2.52E-70 | -1.69E-46 |
| MS.gene050747 | MS.gene50226 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene50226 | 0.834334 | 3.18E-56 | -1.69E-46 |
| MS.gene05081 | MS.gene50226 | 0.840085 | 1.08E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene50226 | 0.851778 | 7.11E-61 | -1.69E-46 |
| MS.gene051387 | MS.gene50226 | 0.817746 | 2.81E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene50226 | 0.8529 | 3.41E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene50226 | 0.8538 | 1.88E-61 | -1.69E-46 |
| MS.gene051588 | MS.gene50226 | 0.810191 | 1.30E-50 | -1.69E-46 |
| MS.gene051605 | MS.gene50226 | 0.804337 | 2.27E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene50226 | 0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene50226 | 0.833914 | 4.06E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene50226 | -0.826428 | 2.73E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene50226 | 0.832159 | 1.11E-55 | -1.69E-46 |
| MS.gene052134 | MS.gene50226 | 0.85158 | 8.09E-61 | -1.69E-46 |
| MS.gene052135 | MS.gene50226 | 0.856823 | 2.48E-62 | -1.69E-46 |
| MS.gene052136 | MS.gene50226 | 0.833104 | 6.46E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene50226 | 0.881215 | 2.89E-70 | -1.69E-46 |
| MS.gene052253 | MS.gene50226 | 0.849229 | 3.70E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene50226 | 0.861064 | 1.33E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene50226 | 0.842754 | 2.13E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene50226 | 0.868442 | 6.51E-66 | -1.69E-46 |
| MS.gene052414 | MS.gene50226 | 0.869909 | 2.17E-66 | -1.69E-46 |
| MS.gene052421 | MS.gene50226 | 0.824714 | 6.95E-54 | -1.69E-46 |
| MS.gene052469 | MS.gene50226 | 0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene50226 | 0.875709 | 2.49E-68 | -1.69E-46 |
| MS.gene052484 | MS.gene50226 | 0.855094 | 7.94E-62 | -1.69E-46 |
| MS.gene052485 | MS.gene50226 | 0.846238 | 2.46E-59 | -1.69E-46 |
| MS.gene052501 | MS.gene50226 | 0.837599 | 4.73E-57 | -1.69E-46 |
| MS.gene052505 | MS.gene50226 | 0.841526 | 4.50E-58 | -1.69E-46 |
| MS.gene052982 | MS.gene50226 | 0.833588 | 4.89E-56 | -1.69E-46 |
| MS.gene053103 | MS.gene50226 | 0.841961 | 3.46E-58 | -1.69E-46 |
| MS.gene053104 | MS.gene50226 | 0.806131 | 9.54E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene50226 | 0.826905 | 2.10E-54 | -1.69E-46 |
| MS.gene053449 | MS.gene50226 | 0.81291 | 3.34E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene50226 | 0.810357 | 1.20E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene50226 | 0.810578 | 1.08E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene50226 | 0.835211 | 1.91E-56 | -1.69E-46 |
| MS.gene054102 | MS.gene50226 | 0.842137 | 3.11E-58 | -1.69E-46 |
| MS.gene054110 | MS.gene50226 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene50226 | 0.808688 | 2.74E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene50226 | 0.808008 | 3.82E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene50226 | 0.837363 | 5.43E-57 | -1.69E-46 |
| MS.gene054719 | MS.gene50226 | 0.84487 | 5.78E-59 | -1.69E-46 |
| MS.gene054884 | MS.gene50226 | -0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene50226 | 0.859448 | 4.11E-63 | -1.69E-46 |
| MS.gene055206 | MS.gene50226 | 0.81491 | 1.21E-51 | -1.69E-46 |
| MS.gene055289 | MS.gene50226 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene50226 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene50226 | 0.814274 | 1.67E-51 | -1.69E-46 |
| MS.gene055412 | MS.gene50226 | 0.820662 | 6.09E-53 | -1.69E-46 |
| MS.gene055539 | MS.gene50226 | 0.875823 | 2.27E-68 | -1.69E-46 |
| MS.gene05553 | MS.gene50226 | 0.903153 | 4.66E-79 | -1.69E-46 |
| MS.gene05556 | MS.gene50226 | 0.833206 | 6.09E-56 | -1.69E-46 |
| MS.gene055601 | MS.gene50226 | -0.801779 | 7.67E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene50226 | 0.823807 | 1.14E-53 | -1.69E-46 |
| MS.gene055744 | MS.gene50226 | 0.834833 | 2.38E-56 | -1.69E-46 |
| MS.gene056166 | MS.gene50226 | 0.812339 | 4.46E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene50226 | 0.82545 | 4.66E-54 | -1.69E-46 |
| MS.gene056497 | MS.gene50226 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene50226 | 0.833257 | 5.92E-56 | -1.69E-46 |
| MS.gene056514 | MS.gene50226 | 0.813154 | 2.96E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene50226 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene05664 | MS.gene50226 | 0.815454 | 9.17E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene50226 | 0.835748 | 1.40E-56 | -1.69E-46 |
| MS.gene056719 | MS.gene50226 | 0.803572 | 3.27E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene50226 | 0.810537 | 1.10E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene50226 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene50226 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene50226 | -0.826943 | 2.06E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene50226 | 0.856542 | 3.00E-62 | -1.69E-46 |
| MS.gene057124 | MS.gene50226 | 0.874325 | 7.38E-68 | -1.69E-46 |
| MS.gene057396 | MS.gene50226 | 0.836765 | 7.73E-57 | -1.69E-46 |
| MS.gene057440 | MS.gene50226 | -0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene50226 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene057734 | MS.gene50226 | 0.807995 | 3.85E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene50226 | 0.855123 | 7.79E-62 | -1.69E-46 |
| MS.gene057823 | MS.gene50226 | 0.854402 | 1.26E-61 | -1.69E-46 |
| MS.gene057825 | MS.gene50226 | 0.848445 | 6.10E-60 | -1.69E-46 |
| MS.gene057856 | MS.gene50226 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene50226 | 0.820648 | 6.14E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene50226 | 0.851503 | 8.51E-61 | -1.69E-46 |
| MS.gene058019 | MS.gene50226 | 0.80394 | 2.74E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene50226 | 0.816 | 6.93E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene50226 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene50226 | 0.831916 | 1.27E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene50226 | 0.833673 | 4.66E-56 | -1.69E-46 |
| MS.gene058276 | MS.gene50226 | 0.813966 | 1.96E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene50226 | 0.854864 | 9.27E-62 | -1.69E-46 |
| MS.gene058444 | MS.gene50226 | 0.859686 | 3.48E-63 | -1.69E-46 |
| MS.gene058700 | MS.gene50226 | 0.854248 | 1.40E-61 | -1.69E-46 |
| MS.gene058838 | MS.gene50226 | 0.81349 | 2.49E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene50226 | 0.812089 | 5.05E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene50226 | 0.859333 | 4.45E-63 | -1.69E-46 |
| MS.gene058948 | MS.gene50226 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene059011 | MS.gene50226 | 0.838416 | 2.91E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene50226 | 0.825183 | 5.39E-54 | -1.69E-46 |
| MS.gene059141 | MS.gene50226 | 0.857663 | 1.40E-62 | -1.69E-46 |
| MS.gene059285 | MS.gene50226 | 0.833944 | 3.99E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene50226 | 0.80315 | 4.00E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene50226 | 0.843579 | 1.29E-58 | -1.69E-46 |
| MS.gene059455 | MS.gene50226 | 0.854124 | 1.52E-61 | -1.69E-46 |
| MS.gene059597 | MS.gene50226 | 0.828639 | 8.04E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene50226 | 0.838321 | 3.08E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene50226 | 0.854963 | 8.67E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene50226 | 0.847177 | 1.36E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene50226 | 0.85023 | 1.94E-60 | -1.69E-46 |
| MS.gene059717 | MS.gene50226 | 0.813745 | 2.19E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene50226 | 0.803085 | 4.12E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene50226 | 0.80288 | 4.55E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene50226 | 0.818388 | 2.01E-52 | -1.69E-46 |
| MS.gene060247 | MS.gene50226 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene50226 | 0.872115 | 4.08E-67 | -1.69E-46 |
| MS.gene060407 | MS.gene50226 | 0.848946 | 4.43E-60 | -1.69E-46 |
| MS.gene060835 | MS.gene50226 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene50226 | 0.801624 | 8.25E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene50226 | 0.841302 | 5.16E-58 | -1.69E-46 |
| MS.gene061154 | MS.gene50226 | 0.840667 | 7.57E-58 | -1.69E-46 |
| MS.gene061159 | MS.gene50226 | 0.855028 | 8.30E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50226.t1 | MTR_5g072900 | 96.278 | 403 | 12 | 2 | 1 | 403 | 1 | 400 | 0.0 | 795 |
| MS.gene50226.t1 | MTR_8g064720 | 36.474 | 329 | 184 | 8 | 55 | 379 | 60 | 367 | 2.34e-57 | 193 |
| MS.gene50226.t1 | MTR_7g006040 | 38.304 | 342 | 175 | 11 | 64 | 397 | 49 | 362 | 4.84e-57 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50226.t1 | AT1G07010 | 65.672 | 402 | 124 | 2 | 1 | 402 | 1 | 388 | 0.0 | 543 |
| MS.gene50226.t1 | AT1G07010 | 65.174 | 402 | 122 | 3 | 1 | 402 | 1 | 384 | 0.0 | 531 |
| MS.gene50226.t1 | AT1G07010 | 63.196 | 413 | 127 | 4 | 1 | 402 | 1 | 399 | 0.0 | 520 |
| MS.gene50226.t1 | AT1G18480 | 36.716 | 335 | 174 | 8 | 73 | 396 | 56 | 363 | 9.14e-60 | 199 |
Find 108 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTTGTCTAGGTAAA+TGG | 0.194308 | 5.2:+61058333 | MS.gene50226:intron |
| TTGAAACCTATTGTTGTTAT+TGG | 0.205083 | 5.2:+61056199 | MS.gene50226:CDS |
| TTACCTCAGGTCTTGAATTA+AGG | 0.225021 | 5.2:-61060263 | None:intergenic |
| CTCAAACTGTTGGGGTAAAT+TGG | 0.237790 | 5.2:+61059972 | MS.gene50226:CDS |
| GAAAGGTGGAGCTGTGTTTC+AGG | 0.243774 | 5.2:+61057791 | MS.gene50226:CDS |
| GATTTCAGATATGTTGATTC+TGG | 0.255499 | 5.2:+61058384 | MS.gene50226:CDS |
| TGATGAATGTAGTGATTTCT+TGG | 0.278304 | 5.2:+61058413 | MS.gene50226:CDS |
| TTCACTGTATCTGTCCGTTT+TGG | 0.334866 | 5.2:-61060413 | None:intergenic |
| AAGAGACTCACCAGATTTGA+TGG | 0.344529 | 5.2:+61059450 | MS.gene50226:CDS |
| TAGTGGCAATGAAAGGAATT+TGG | 0.346079 | 5.2:-61059390 | None:intergenic |
| TTGCCCGATCAATCCTCTTT+CGG | 0.346959 | 5.2:+61058839 | MS.gene50226:CDS |
| GAAATCCCCTTCCACATTCA+TGG | 0.358343 | 5.2:-61058367 | None:intergenic |
| ACGATAAAGCTAGAGTTATA+AGG | 0.381232 | 5.2:+61060389 | MS.gene50226:CDS |
| CCTGTCCTTGCTGCGATCAT+TGG | 0.382520 | 5.2:+61057752 | MS.gene50226:CDS |
| CTTTCGGCCTGGTGGGCCAC+TGG | 0.385890 | 5.2:+61058855 | MS.gene50226:CDS |
| GATGGATTATGAGGCTAAAC+AGG | 0.389943 | 5.2:+61059468 | MS.gene50226:CDS |
| AACAAAGTCAAGAAGTCATT+GGG | 0.395929 | 5.2:+61058518 | MS.gene50226:CDS |
| CAATTTACCCCAACAGTTTG+AGG | 0.402208 | 5.2:-61059971 | None:intergenic |
| GACATACTCCTCAAACTGTT+GGG | 0.404387 | 5.2:+61059963 | MS.gene50226:CDS |
| GGGGTTATGACAGTGTTGTT+TGG | 0.412400 | 5.2:+61059413 | MS.gene50226:CDS |
| GCCTCATAATCCATCAAATC+TGG | 0.415124 | 5.2:-61059460 | None:intergenic |
| CTTCCACATTCATGGTCTCA+TGG | 0.416944 | 5.2:-61058359 | None:intergenic |
| ACCAGATTTGATGGATTATG+AGG | 0.427587 | 5.2:+61059459 | MS.gene50226:CDS |
| ATGACAGTGTTGTTTGGAAT+CGG | 0.427904 | 5.2:+61059419 | MS.gene50226:CDS |
| GGGTCACCAATAACAACAAT+AGG | 0.432348 | 5.2:-61056205 | None:intergenic |
| CACTGGCGTGTGAGCTTGCA+AGG | 0.436226 | 5.2:+61058872 | MS.gene50226:CDS |
| AGCTAGATATGCACTTGAAA+TGG | 0.443839 | 5.2:+61057225 | MS.gene50226:CDS |
| TCAATAATTCTGAAGATGAC+TGG | 0.446589 | 5.2:+61058442 | MS.gene50226:CDS |
| GGAAGAAACATTTACCGGTT+GGG | 0.451567 | 5.2:+61058464 | MS.gene50226:CDS |
| GTAAATACAATTGTAGCATA+TGG | 0.452563 | 5.2:+61060211 | MS.gene50226:intron |
| GAACAAAGTCAAGAAGTCAT+TGG | 0.454433 | 5.2:+61058517 | MS.gene50226:CDS |
| GGACAGATACAGTGAACTTC+AGG | 0.454584 | 5.2:+61060420 | MS.gene50226:CDS |
| GACTGGGAAGAAACATTTAC+CGG | 0.465497 | 5.2:+61058459 | MS.gene50226:CDS |
| CGATCAATCCTCTTTCGGCC+TGG | 0.470126 | 5.2:+61058844 | MS.gene50226:CDS |
| GCTGGTGTGTTGAGCTCTGA+TGG | 0.477454 | 5.2:+61057247 | MS.gene50226:CDS |
| CGAGGATGAGGATGAGAAGA+TGG | 0.485016 | 5.2:-61056082 | None:intergenic |
| CAAGAAGTCATTGGGGACCT+TGG | 0.485464 | 5.2:+61058526 | MS.gene50226:CDS |
| CTCAGATACATCAACCCAAC+CGG | 0.488269 | 5.2:-61058478 | None:intergenic |
| CCTGGTCGCACTATTCTCGC+TGG | 0.489201 | 5.2:+61056247 | MS.gene50226:CDS |
| GAGGTGTTGTTACGAGGATG+AGG | 0.489248 | 5.2:-61056094 | None:intergenic |
| AGCATATGGCGCGTAGATGT+TGG | 0.492916 | 5.2:+61060225 | MS.gene50226:CDS |
| ATTATTAGGACAGAGACAAA+AGG | 0.495750 | 5.2:+61058810 | MS.gene50226:intron |
| CAATCCTCTTTCGGCCTGGT+GGG | 0.501687 | 5.2:+61058848 | MS.gene50226:CDS |
| TATTAGGTGTTGATTCAACT+TGG | 0.506397 | 5.2:+61057693 | MS.gene50226:intron |
| AAATTCCTTTCATTGCCACT+AGG | 0.509689 | 5.2:+61059392 | MS.gene50226:CDS |
| GTGGCCCACCAGGCCGAAAG+AGG | 0.510742 | 5.2:-61058852 | None:intergenic |
| TCAATCCTCTTTCGGCCTGG+TGG | 0.518213 | 5.2:+61058847 | MS.gene50226:CDS |
| AAGGCATGGTGTTGCACTCA+AGG | 0.519563 | 5.2:+61058891 | MS.gene50226:CDS |
| GGACATACTCCTCAAACTGT+TGG | 0.520775 | 5.2:+61059962 | MS.gene50226:CDS |
| CCAATGATCGCAGCAAGGAC+AGG | 0.523343 | 5.2:-61057752 | None:intergenic |
| TGAGTAGTTGGAGATTTACA+TGG | 0.525232 | 5.2:+61057190 | MS.gene50226:intron |
| TTGCACTCAAGGTTAATGAC+TGG | 0.526498 | 5.2:+61058902 | MS.gene50226:CDS |
| CAGGCCGAAAGAGGATTGAT+CGG | 0.532500 | 5.2:-61058843 | None:intergenic |
| AATACCTTCACTAAATTCCA+AGG | 0.532662 | 5.2:-61058543 | None:intergenic |
| GGGAAGAAACATTTACCGGT+TGG | 0.536242 | 5.2:+61058463 | MS.gene50226:CDS |
| CAATAATTCTGAAGATGACT+GGG | 0.536582 | 5.2:+61058443 | MS.gene50226:CDS |
| ATAGTACTGTCATTCTCACT+TGG | 0.538939 | 5.2:-61059367 | None:intergenic |
| TGATGCTAAGGCAATGGTGG+TGG | 0.540164 | 5.2:+61059940 | MS.gene50226:CDS |
| AATTCCTTTCATTGCCACTA+GGG | 0.544604 | 5.2:+61059393 | MS.gene50226:CDS |
| TTGCAGCGTTTCTTCAAGAA+CGG | 0.547457 | 5.2:-61059912 | None:intergenic |
| AATGACTGGGTCTTCTGTCA+TGG | 0.548088 | 5.2:+61058916 | MS.gene50226:CDS |
| AGGCCGAAAGAGGATTGATC+GGG | 0.552133 | 5.2:-61058842 | None:intergenic |
| TGAGACCATGAATGTGGAAG+GGG | 0.554110 | 5.2:+61058362 | MS.gene50226:CDS |
| TTCAGATATGTTGATTCTGG+AGG | 0.554414 | 5.2:+61058387 | MS.gene50226:CDS |
| TAGAGTTATAAGGACCAAAA+CGG | 0.555374 | 5.2:+61060399 | MS.gene50226:CDS |
| GAAAGAGAGGTGTTGTTACG+AGG | 0.555547 | 5.2:-61056100 | None:intergenic |
| GCTGCAAGCAGTTGATGCTA+AGG | 0.559445 | 5.2:+61059928 | MS.gene50226:CDS |
| ACTGACCGTGGTGAGGAAGA+AGG | 0.565272 | 5.2:-61058942 | None:intergenic |
| GCTCTGATGGTCAAGACTTG+TGG | 0.566662 | 5.2:+61057260 | MS.gene50226:CDS |
| TCACACGCCAGTGGCCCACC+AGG | 0.567392 | 5.2:-61058862 | None:intergenic |
| TGCACTCAAGGTTAATGACT+GGG | 0.567545 | 5.2:+61058903 | MS.gene50226:CDS |
| TCTTGAATTAAGGACTCCAC+TGG | 0.567571 | 5.2:-61060253 | None:intergenic |
| TTATTAGGACAGAGACAAAA+GGG | 0.571241 | 5.2:+61058811 | MS.gene50226:intron |
| AGATATGCACTTGAAATGGC+TGG | 0.572444 | 5.2:+61057229 | MS.gene50226:CDS |
| GATGGTCAAGACTTGTGGAC+TGG | 0.574733 | 5.2:+61057265 | MS.gene50226:CDS |
| GCGTGTGAGCTTGCAAGGCA+TGG | 0.576777 | 5.2:+61058877 | MS.gene50226:CDS |
| CATGAGACCATGAATGTGGA+AGG | 0.579915 | 5.2:+61058360 | MS.gene50226:CDS |
| GGAGCAGAAACAAAAGTTGG+TGG | 0.582357 | 5.2:-61056226 | None:intergenic |
| CCAGGAGCAGAAACAAAAGT+TGG | 0.582610 | 5.2:-61056229 | None:intergenic |
| GGGACCTTGGAATTTAGTGA+AGG | 0.593234 | 5.2:+61058539 | MS.gene50226:CDS |
| TAACCCCTAGTGGCAATGAA+AGG | 0.595768 | 5.2:-61059397 | None:intergenic |
| CCAGCGAGAATAGTGCGACC+AGG | 0.596339 | 5.2:-61056247 | None:intergenic |
| GATAAACAAGCGAAATCGAA+AGG | 0.596790 | 5.2:+61057774 | MS.gene50226:CDS |
| ATTCCTTTCATTGCCACTAG+GGG | 0.605294 | 5.2:+61059394 | MS.gene50226:CDS |
| GGATGAGAAGATGGTGAGAG+TGG | 0.608294 | 5.2:-61056073 | None:intergenic |
| ATGAGACCATGAATGTGGAA+GGG | 0.617703 | 5.2:+61058361 | MS.gene50226:CDS |
| ACATACTCCTCAAACTGTTG+GGG | 0.629092 | 5.2:+61059964 | MS.gene50226:CDS |
| GGGTTGATGTATCTGAGAAG+TGG | 0.629338 | 5.2:+61058484 | MS.gene50226:CDS |
| GAGCAGAAACAAAAGTTGGT+GGG | 0.630088 | 5.2:-61056225 | None:intergenic |
| GGCGGCCTTCTTCCTCACCA+CGG | 0.632687 | 5.2:+61058937 | MS.gene50226:CDS |
| CTTGCAAGCTCACACGCCAG+TGG | 0.635650 | 5.2:-61058871 | None:intergenic |
| TTTATCCAATGATCGCAGCA+AGG | 0.638421 | 5.2:-61057757 | None:intergenic |
| GTAAAATACTGACCGTGGTG+AGG | 0.638720 | 5.2:-61058949 | None:intergenic |
| TAGTTGCGTATGGTTTAGAG+CGG | 0.656501 | 5.2:+61059311 | MS.gene50226:intron |
| AGCAGTTGATGCTAAGGCAA+TGG | 0.660163 | 5.2:+61059934 | MS.gene50226:CDS |
| CTTGGAGATATATTAGATCG+AGG | 0.662741 | 5.2:+61057711 | MS.gene50226:CDS |
| GATGCTAAGGCAATGGTGGT+GGG | 0.662923 | 5.2:+61059941 | MS.gene50226:CDS |
| GGTCAAGACTTGTGGACTGG+TGG | 0.662970 | 5.2:+61057268 | MS.gene50226:CDS |
| AACACTGTCATAACCCCTAG+TGG | 0.665651 | 5.2:-61059407 | None:intergenic |
| AAACCATGAGACCATGAATG+TGG | 0.677540 | 5.2:+61058356 | MS.gene50226:CDS |
| AGTCCTTAATTCAAGACCTG+AGG | 0.680639 | 5.2:+61060260 | MS.gene50226:CDS |
| AAACAAGCGAAATCGAAAGG+TGG | 0.681777 | 5.2:+61057777 | MS.gene50226:CDS |
| CAGATACAGTGAACTTCAGG+CGG | 0.688619 | 5.2:+61060423 | MS.gene50226:CDS |
| GACTGGGTCTTCTGTCATGG+CGG | 0.692152 | 5.2:+61058919 | MS.gene50226:CDS |
| GTAGATGTTGGAATGTCCAG+TGG | 0.693208 | 5.2:+61060237 | MS.gene50226:CDS |
| AGTTGATGCTAAGGCAATGG+TGG | 0.697830 | 5.2:+61059937 | MS.gene50226:CDS |
| TGAACAAAGAAGTGTCTGAG+TGG | 0.728833 | 5.2:+61059335 | MS.gene50226:CDS |
| ACAAAGTCAAGAAGTCATTG+GGG | 0.742521 | 5.2:+61058519 | MS.gene50226:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTAATTTTCAATAAA+TGG | + | chr5.2:61058310-61058329 | MS.gene50226:intron | 10.0% |
| !! | AAACTTCATAATAATAACAT+GGG | - | chr5.2:61058220-61058239 | None:intergenic | 15.0% |
| !! | AAATAAGCAAAATTAAGATA+TGG | - | chr5.2:61056290-61056309 | None:intergenic | 15.0% |
| !! | ATATATAAAAAACAGATAAC+AGG | - | chr5.2:61057146-61057165 | None:intergenic | 15.0% |
| !! | CAAATAATTCATTTCAAAAA+AGG | - | chr5.2:61057903-61057922 | None:intergenic | 15.0% |
| !! | CTACTTAATTTAGATAAATA+TGG | - | chr5.2:61058243-61058262 | None:intergenic | 15.0% |
| !! | TCTAAGCTAAAAATATTATA+TGG | + | chr5.2:61059587-61059606 | MS.gene50226:intron | 15.0% |
| !!! | TCTTAATTTTGCTTATTTTT+TGG | + | chr5.2:61056292-61056311 | MS.gene50226:intron | 15.0% |
| !! | AACAAATTTAACATGGTATA+GGG | + | chr5.2:61059727-61059746 | MS.gene50226:intron | 20.0% |
| !! | AACTCAATAATTCAATATTC+AGG | + | chr5.2:61059883-61059902 | MS.gene50226:intron | 20.0% |
| !! | AATAATGAAAAGTTACAGAA+AGG | - | chr5.2:61059702-61059721 | None:intergenic | 20.0% |
| !! | ATAACTAATATACTAGCATT+TGG | - | chr5.2:61059076-61059095 | None:intergenic | 20.0% |
| !! | ATTCCTAATTCAAACTAATT+TGG | + | chr5.2:61058618-61058637 | MS.gene50226:intron | 20.0% |
| !! | GAAACTTCATAATAATAACA+TGG | - | chr5.2:61058221-61058240 | None:intergenic | 20.0% |
| !! | GATTTATAATGTAAAGATTG+TGG | - | chr5.2:61060075-61060094 | None:intergenic | 20.0% |
| !! | TTAAGTCAACAAATTTAACA+TGG | + | chr5.2:61059720-61059739 | MS.gene50226:intron | 20.0% |
| !! | TTGAATTAGGAATTTATTCT+TGG | - | chr5.2:61058611-61058630 | None:intergenic | 20.0% |
| !!! | AATATTTTTAGCTTAGACAA+GGG | - | chr5.2:61059584-61059603 | None:intergenic | 20.0% |
| !!! | ATTTTAATTCACTAATACGA+TGG | + | chr5.2:61057079-61057098 | MS.gene50226:intron | 20.0% |
| !!! | TAATATTTTTAGCTTAGACA+AGG | - | chr5.2:61059585-61059604 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGTATAGATTG+TGG | - | chr5.2:61060049-61060068 | None:intergenic | 20.0% |
| ! | AATAATTCCAAGAATGCTTA+AGG | - | chr5.2:61060013-61060032 | None:intergenic | 25.0% |
| ! | AATCAATTCAAGATACAGAT+GGG | - | chr5.2:61059186-61059205 | None:intergenic | 25.0% |
| ! | AGTACTATAAACAGTAAGAA+TGG | - | chr5.2:61057530-61057549 | None:intergenic | 25.0% |
| ! | CAACAAATTTAACATGGTAT+AGG | + | chr5.2:61059726-61059745 | MS.gene50226:intron | 25.0% |
| ! | CTATTGTTGTCTTTAACATT+TGG | - | chr5.2:61058150-61058169 | None:intergenic | 25.0% |
| ! | GCAAAATTAAGATATGGAAA+AGG | - | chr5.2:61056284-61056303 | None:intergenic | 25.0% |
| ! | GTAAATACAATTGTAGCATA+TGG | + | chr5.2:61060211-61060230 | MS.gene50226:intron | 25.0% |
| ! | TCACTATCTTGAATTGTATT+TGG | + | chr5.2:61059046-61059065 | MS.gene50226:intron | 25.0% |
| ! | TCATGTTAAACAAAACCAAA+AGG | - | chr5.2:61058978-61058997 | None:intergenic | 25.0% |
| ! | TTAAGGAAATAAGCTGAAAA+TGG | - | chr5.2:61057995-61058014 | None:intergenic | 25.0% |
| ! | TTGAATCAACACCTAATATA+CGG | - | chr5.2:61057691-61057710 | None:intergenic | 25.0% |
| ! | TTGTACAGTATGTGATTAAT+AGG | + | chr5.2:61059514-61059533 | MS.gene50226:intron | 25.0% |
| ! | TTTAACCCATGGAATTATTA+AGG | - | chr5.2:61056740-61056759 | None:intergenic | 25.0% |
| !! | AGAATTTTGTGCTAGAAATA+TGG | + | chr5.2:61056872-61056891 | MS.gene50226:intron | 25.0% |
| !! | GTCTTTAACATTTGGTAATT+AGG | - | chr5.2:61058142-61058161 | None:intergenic | 25.0% |
| !! | TTGAAACCTATTGTTGTTAT+TGG | + | chr5.2:61056199-61056218 | MS.gene50226:CDS | 25.0% |
| !! | TTGCCAAATTAGTTTGAATT+AGG | - | chr5.2:61058624-61058643 | None:intergenic | 25.0% |
| !!! | AACTACTTGATGTTGTTTTA+AGG | - | chr5.2:61056180-61056199 | None:intergenic | 25.0% |
| AACAAAGTCAAGAAGTCATT+GGG | + | chr5.2:61058518-61058537 | MS.gene50226:CDS | 30.0% | |
| AATACCTTCACTAAATTCCA+AGG | - | chr5.2:61058546-61058565 | None:intergenic | 30.0% | |
| AATGAAAAGTTACAGAAAGG+TGG | - | chr5.2:61059699-61059718 | None:intergenic | 30.0% | |
| AATTAGGATCAAATGGAGAA+TGG | + | chr5.2:61056676-61056695 | MS.gene50226:intron | 30.0% | |
| ACAGTATGTGATTAATAGGA+AGG | + | chr5.2:61059518-61059537 | MS.gene50226:intron | 30.0% | |
| ACGATAAAGCTAGAGTTATA+AGG | + | chr5.2:61060389-61060408 | MS.gene50226:CDS | 30.0% | |
| ACTATAAACAGTAAGAATGG+AGG | - | chr5.2:61057527-61057546 | None:intergenic | 30.0% | |
| AGGATGAAGATAATATTACC+AGG | - | chr5.2:61059271-61059290 | None:intergenic | 30.0% | |
| AGTTTCACAAATGTATACTC+TGG | - | chr5.2:61057936-61057955 | None:intergenic | 30.0% | |
| ATCAATTCAAGATACAGATG+GGG | - | chr5.2:61059185-61059204 | None:intergenic | 30.0% | |
| ATGCTTACTGTCTTTCAAAA+TGG | + | chr5.2:61057300-61057319 | MS.gene50226:intron | 30.0% | |
| ATTAAAGCTGCTATCTCTAA+GGG | + | chr5.2:61057877-61057896 | MS.gene50226:intron | 30.0% | |
| ATTATTAGGACAGAGACAAA+AGG | + | chr5.2:61058810-61058829 | MS.gene50226:intron | 30.0% | |
| CAATATAATGCGTAATGAGT+AGG | - | chr5.2:61058191-61058210 | None:intergenic | 30.0% | |
| CAATCAATTCAAGATACAGA+TGG | - | chr5.2:61059187-61059206 | None:intergenic | 30.0% | |
| CAGAAAATGAAGAGACAAAA+AGG | - | chr5.2:61059291-61059310 | None:intergenic | 30.0% | |
| CTGTAAACTACAATAACTAC+TGG | - | chr5.2:61060329-61060348 | None:intergenic | 30.0% | |
| GCTACAATTGTATTTACTGT+AGG | - | chr5.2:61060208-61060227 | None:intergenic | 30.0% | |
| GGGTCATATAGACAAAATTT+CGG | + | chr5.2:61058702-61058721 | MS.gene50226:intron | 30.0% | |
| TAGAGTTATAAGGACCAAAA+CGG | + | chr5.2:61060399-61060418 | MS.gene50226:CDS | 30.0% | |
| TGATGAATGTAGTGATTTCT+TGG | + | chr5.2:61058413-61058432 | MS.gene50226:CDS | 30.0% | |
| TGCTAACAGTAATTACTAAC+AGG | - | chr5.2:61056919-61056938 | None:intergenic | 30.0% | |
| TTAAGATGTTTAGCCAAACA+AGG | + | chr5.2:61058116-61058135 | MS.gene50226:intron | 30.0% | |
| TTATTAGGACAGAGACAAAA+GGG | + | chr5.2:61058811-61058830 | MS.gene50226:intron | 30.0% | |
| TTTGTCTCTGTCCTAATAAT+CGG | - | chr5.2:61058810-61058829 | None:intergenic | 30.0% | |
| ! | ATCGAATACTTTTGATGTAG+TGG | + | chr5.2:61056405-61056424 | MS.gene50226:intron | 30.0% |
| ! | CAATAATTCTGAAGATGACT+GGG | + | chr5.2:61058443-61058462 | MS.gene50226:CDS | 30.0% |
| ! | GATGAAGTTTTCCGATTATT+AGG | + | chr5.2:61058796-61058815 | MS.gene50226:intron | 30.0% |
| ! | TAAAACCTTTTACGCGAATT+AGG | + | chr5.2:61056660-61056679 | MS.gene50226:intron | 30.0% |
| ! | TCAATAATTCTGAAGATGAC+TGG | + | chr5.2:61058442-61058461 | MS.gene50226:CDS | 30.0% |
| ! | TCAGTATTTTACTGTCCTTT+TGG | + | chr5.2:61058960-61058979 | MS.gene50226:intron | 30.0% |
| ! | TGATTCAGCAAATTTGAAAC+AGG | - | chr5.2:61059226-61059245 | None:intergenic | 30.0% |
| ! | TTACTGTTAGCAGTTTTTGT+TGG | + | chr5.2:61056927-61056946 | MS.gene50226:intron | 30.0% |
| !! | ATTAATAGGAAGGTATTGTG+CGG | + | chr5.2:61059528-61059547 | MS.gene50226:intron | 30.0% |
| !! | GATTTCAGATATGTTGATTC+TGG | + | chr5.2:61058384-61058403 | MS.gene50226:CDS | 30.0% |
| !! | GTTTGTTTTCTTTGAGTAGT+TGG | + | chr5.2:61057178-61057197 | MS.gene50226:intron | 30.0% |
| !! | TATTAGGTGTTGATTCAACT+TGG | + | chr5.2:61057693-61057712 | MS.gene50226:intron | 30.0% |
| !! | TGTTTCAGGTTTGTAATTTG+TGG | + | chr5.2:61057805-61057824 | MS.gene50226:intron | 30.0% |
| !! | TTACTTTTCCTCCGTATATT+AGG | + | chr5.2:61057677-61057696 | MS.gene50226:intron | 30.0% |
| !!! | ATGGCGTAGTAGTTTTTTTA+TGG | + | chr5.2:61056695-61056714 | MS.gene50226:intron | 30.0% |
| !!! | ATTTTAACTCCTTTTACCCT+TGG | + | chr5.2:61059135-61059154 | MS.gene50226:intron | 30.0% |
| !!! | CGTAGTAGTTTTTTTATGGA+AGG | + | chr5.2:61056699-61056718 | MS.gene50226:intron | 30.0% |
| AAAAAAAGTTCTGCAACAGC+AGG | - | chr5.2:61056641-61056660 | None:intergenic | 35.0% | |
| AAATTCCTTTCATTGCCACT+AGG | + | chr5.2:61059392-61059411 | MS.gene50226:CDS | 35.0% | |
| AATCAACACCTAATATACGG+AGG | - | chr5.2:61057688-61057707 | None:intergenic | 35.0% | |
| AATTCCTTTCATTGCCACTA+GGG | + | chr5.2:61059393-61059412 | MS.gene50226:CDS | 35.0% | |
| ACAAAGTCAAGAAGTCATTG+GGG | + | chr5.2:61058519-61058538 | MS.gene50226:CDS | 35.0% | |
| AGAAGAAGAAGAAGAAAGAG+AGG | - | chr5.2:61056116-61056135 | None:intergenic | 35.0% | |
| AGCTAGATATGCACTTGAAA+TGG | + | chr5.2:61057225-61057244 | MS.gene50226:CDS | 35.0% | |
| ATAGTACTGTCATTCTCACT+TGG | - | chr5.2:61059370-61059389 | None:intergenic | 35.0% | |
| CAATACAAGTCATACTGAGA+CGG | - | chr5.2:61059852-61059871 | None:intergenic | 35.0% | |
| CATTAAAGCTGCTATCTCTA+AGG | + | chr5.2:61057876-61057895 | MS.gene50226:intron | 35.0% | |
| CTGCTCCTTAATAATTCCAT+GGG | + | chr5.2:61056732-61056751 | MS.gene50226:intron | 35.0% | |
| CTTATTTCCTTAAACTCTCC+AGG | + | chr5.2:61058002-61058021 | MS.gene50226:intron | 35.0% | |
| CTTGGAGATATATTAGATCG+AGG | + | chr5.2:61057711-61057730 | MS.gene50226:CDS | 35.0% | |
| GAAAGTTTCTGTGAACAGAA+TGG | + | chr5.2:61057047-61057066 | MS.gene50226:intron | 35.0% | |
| GAACAAAGTCAAGAAGTCAT+TGG | + | chr5.2:61058517-61058536 | MS.gene50226:CDS | 35.0% | |
| GACATTTCCTTAAGCATTCT+TGG | + | chr5.2:61060003-61060022 | MS.gene50226:intron | 35.0% | |
| GATAAACAAGCGAAATCGAA+AGG | + | chr5.2:61057774-61057793 | MS.gene50226:CDS | 35.0% | |
| GCTGAAAATGGACATATCAT+AGG | - | chr5.2:61057983-61058002 | None:intergenic | 35.0% | |
| TAGCATAACTGTGACATCAT+AGG | - | chr5.2:61056470-61056489 | None:intergenic | 35.0% | |
| TAGTGGCAATGAAAGGAATT+TGG | - | chr5.2:61059393-61059412 | None:intergenic | 35.0% | |
| TATAGCGACACTATAGCTTA+GGG | + | chr5.2:61057370-61057389 | MS.gene50226:intron | 35.0% | |
| TCCTTCACTAGAATTTACTG+CGG | + | chr5.2:61059111-61059130 | MS.gene50226:intron | 35.0% | |
| TGAGTAGTTGGAGATTTACA+TGG | + | chr5.2:61057190-61057209 | MS.gene50226:intron | 35.0% | |
| TTACCTCAGGTCTTGAATTA+AGG | - | chr5.2:61060266-61060285 | None:intergenic | 35.0% | |
| TTACGCGAATTAGGATCAAA+TGG | + | chr5.2:61056669-61056688 | MS.gene50226:intron | 35.0% | |
| TTCTGCTTTGTCTAGGTAAA+TGG | + | chr5.2:61058333-61058352 | MS.gene50226:intron | 35.0% | |
| TTGATCCTAATTCGCGTAAA+AGG | - | chr5.2:61056668-61056687 | None:intergenic | 35.0% | |
| TTTCTCTAATTTCAGATGCC+TGG | + | chr5.2:61059250-61059269 | MS.gene50226:intron | 35.0% | |
| ! | AGGCATCTGAAATTAGAGAA+AGG | - | chr5.2:61059251-61059270 | None:intergenic | 35.0% |
| ! | ATGATTCTGAAAAACCAAGC+TGG | - | chr5.2:61056828-61056847 | None:intergenic | 35.0% |
| ! | TAAATGGTTCTGCTTTGTCT+AGG | + | chr5.2:61058326-61058345 | MS.gene50226:intron | 35.0% |
| ! | TCATTTTCTGTAGTTGCGTA+TGG | + | chr5.2:61059301-61059320 | MS.gene50226:intron | 35.0% |
| !! | ACCAGATTTGATGGATTATG+AGG | + | chr5.2:61059459-61059478 | MS.gene50226:CDS | 35.0% |
| !! | ATGACAGTGTTGTTTGGAAT+CGG | + | chr5.2:61059419-61059438 | MS.gene50226:CDS | 35.0% |
| !! | CGTCTATAATTTCTAGAACC+TGG | - | chr5.2:61060372-61060391 | None:intergenic | 35.0% |
| !! | TTATTCCAGCACGTTGATTT+GGG | - | chr5.2:61058676-61058695 | None:intergenic | 35.0% |
| !! | TTCAGATATGTTGATTCTGG+AGG | + | chr5.2:61058387-61058406 | MS.gene50226:CDS | 35.0% |
| !! | TTTGGTAATTAGGCCTTGTT+TGG | - | chr5.2:61058132-61058151 | None:intergenic | 35.0% |
| !!! | AAATGCCAGATGCTTTTTCT+AGG | + | chr5.2:61060126-61060145 | MS.gene50226:intron | 35.0% |
| !!! | AGTTTTTGTTGGCTTTGCTT+TGG | + | chr5.2:61056938-61056957 | MS.gene50226:intron | 35.0% |
| AAACAAGCGAAATCGAAAGG+TGG | + | chr5.2:61057777-61057796 | MS.gene50226:CDS | 40.0% | |
| AAACCATGAGACCATGAATG+TGG | + | chr5.2:61058356-61058375 | MS.gene50226:CDS | 40.0% | |
| AACGTGCTGGAATAAGTTAC+GGG | + | chr5.2:61058681-61058700 | MS.gene50226:intron | 40.0% | |
| AAGAGACTCACCAGATTTGA+TGG | + | chr5.2:61059450-61059469 | MS.gene50226:CDS | 40.0% | |
| AAGCTATCCTGGAGAGTTTA+AGG | - | chr5.2:61058012-61058031 | None:intergenic | 40.0% | |
| ACAACAATAGTACACCGCTA+AGG | + | chr5.2:61058160-61058179 | MS.gene50226:intron | 40.0% | |
| ACAGTAAGAATGGAGGCTAA+TGG | - | chr5.2:61057520-61057539 | None:intergenic | 40.0% | |
| ACATACTCCTCAAACTGTTG+GGG | + | chr5.2:61059964-61059983 | MS.gene50226:CDS | 40.0% | |
| ACCGCAGTAAATTCTAGTGA+AGG | - | chr5.2:61059115-61059134 | None:intergenic | 40.0% | |
| AGATATGCACTTGAAATGGC+TGG | + | chr5.2:61057229-61057248 | MS.gene50226:CDS | 40.0% | |
| AGCAACTATGCGCAATATCA+AGG | - | chr5.2:61056439-61056458 | None:intergenic | 40.0% | |
| AGTCCTTAATTCAAGACCTG+AGG | + | chr5.2:61060260-61060279 | MS.gene50226:CDS | 40.0% | |
| ATGAGACCATGAATGTGGAA+GGG | + | chr5.2:61058361-61058380 | MS.gene50226:CDS | 40.0% | |
| ATGAGTAGGCATATCCTTAG+CGG | - | chr5.2:61058177-61058196 | None:intergenic | 40.0% | |
| ATTCCTTTCATTGCCACTAG+GGG | + | chr5.2:61059394-61059413 | MS.gene50226:CDS | 40.0% | |
| CAACGTGCTGGAATAAGTTA+CGG | + | chr5.2:61058680-61058699 | MS.gene50226:intron | 40.0% | |
| CAAGACCTGAGGTAAATCAA+AGG | + | chr5.2:61060271-61060290 | MS.gene50226:intron | 40.0% | |
| CAATCTGTGATTGAACACTG+GGG | + | chr5.2:61057494-61057513 | MS.gene50226:intron | 40.0% | |
| CAATTTACCCCAACAGTTTG+AGG | - | chr5.2:61059974-61059993 | None:intergenic | 40.0% | |
| CATAAACTAGTATGCCAGCT+TGG | + | chr5.2:61056811-61056830 | MS.gene50226:intron | 40.0% | |
| CCATGGAATTATTAAGGAGC+AGG | - | chr5.2:61056734-61056753 | None:intergenic | 40.0% | |
| CCTGCTCCTTAATAATTCCA+TGG | + | chr5.2:61056731-61056750 | MS.gene50226:intron | 40.0% | |
| CTAGGTCAGTTAGTGCTTTA+TGG | + | chr5.2:61060144-61060163 | MS.gene50226:intron | 40.0% | |
| CTATAGCGACACTATAGCTT+AGG | + | chr5.2:61057369-61057388 | MS.gene50226:intron | 40.0% | |
| CTCAAACTGTTGGGGTAAAT+TGG | + | chr5.2:61059972-61059991 | MS.gene50226:CDS | 40.0% | |
| GAACATGTGAAGACTCATGT+AGG | - | chr5.2:61060297-61060316 | None:intergenic | 40.0% | |
| GACATACTCCTCAAACTGTT+GGG | + | chr5.2:61059963-61059982 | MS.gene50226:CDS | 40.0% | |
| GACTGGGAAGAAACATTTAC+CGG | + | chr5.2:61058459-61058478 | MS.gene50226:CDS | 40.0% | |
| GATATTGCGCATAGTTGCTA+TGG | + | chr5.2:61056440-61056459 | MS.gene50226:intron | 40.0% | |
| GCAATCTGTGATTGAACACT+GGG | + | chr5.2:61057493-61057512 | MS.gene50226:intron | 40.0% | |
| GCCTCATAATCCATCAAATC+TGG | - | chr5.2:61059463-61059482 | None:intergenic | 40.0% | |
| GGGTCACCAATAACAACAAT+AGG | - | chr5.2:61056208-61056227 | None:intergenic | 40.0% | |
| GTCAAATAGCAGCGATATAG+CGG | + | chr5.2:61057446-61057465 | MS.gene50226:intron | 40.0% | |
| GTCAGTTAGTGCTTTATGGA+TGG | + | chr5.2:61060148-61060167 | MS.gene50226:intron | 40.0% | |
| GTGTTGTGTTCTTATTCTCC+AGG | + | chr5.2:61060351-61060370 | MS.gene50226:intron | 40.0% | |
| TAAACTCTCCAGGATAGCTT+AGG | + | chr5.2:61058012-61058031 | MS.gene50226:intron | 40.0% | |
| TAATTCCCAAATCAACGTGC+TGG | + | chr5.2:61058668-61058687 | MS.gene50226:intron | 40.0% | |
| TAGTTGCGTATGGTTTAGAG+CGG | + | chr5.2:61059311-61059330 | MS.gene50226:intron | 40.0% | |
| TCAAGATACAGATGGGGATT+GGG | - | chr5.2:61059179-61059198 | None:intergenic | 40.0% | |
| TCTTGAATTAAGGACTCCAC+TGG | - | chr5.2:61060256-61060275 | None:intergenic | 40.0% | |
| TGATACTGTCACAATTGCAG+TGG | + | chr5.2:61056590-61056609 | MS.gene50226:intron | 40.0% | |
| TGCAATCTGTGATTGAACAC+TGG | + | chr5.2:61057492-61057511 | MS.gene50226:intron | 40.0% | |
| TGCACTCAAGGTTAATGACT+GGG | + | chr5.2:61058903-61058922 | MS.gene50226:CDS | 40.0% | |
| TTCAAGATACAGATGGGGAT+TGG | - | chr5.2:61059180-61059199 | None:intergenic | 40.0% | |
| TTGCACTCAAGGTTAATGAC+TGG | + | chr5.2:61058902-61058921 | MS.gene50226:CDS | 40.0% | |
| TTGCAGCGTTTCTTCAAGAA+CGG | - | chr5.2:61059915-61059934 | None:intergenic | 40.0% | |
| TTGTGTTTCCTAAGCTATCC+TGG | - | chr5.2:61058023-61058042 | None:intergenic | 40.0% | |
| TTTATCCAATGATCGCAGCA+AGG | - | chr5.2:61057760-61057779 | None:intergenic | 40.0% | |
| ! | CAAGCTGGCATACTAGTTTA+TGG | - | chr5.2:61056813-61056832 | None:intergenic | 40.0% |
| ! | CTTATTCCAGCACGTTGATT+TGG | - | chr5.2:61058677-61058696 | None:intergenic | 40.0% |
| ! | GAGCAGAAACAAAAGTTGGT+GGG | - | chr5.2:61056228-61056247 | None:intergenic | 40.0% |
| ! | GGAAGAAACATTTACCGGTT+GGG | + | chr5.2:61058464-61058483 | MS.gene50226:CDS | 40.0% |
| ! | TTCACTGTATCTGTCCGTTT+TGG | - | chr5.2:61060416-61060435 | None:intergenic | 40.0% |
| ! | TTCAGTTCAGCTTTAACCCA+TGG | - | chr5.2:61056751-61056770 | None:intergenic | 40.0% |
| ! | TTTAGCTTAGACAAGGGAGA+GGG | - | chr5.2:61059578-61059597 | None:intergenic | 40.0% |
| !! | ACTGACCTAGAAAAAGCATC+TGG | - | chr5.2:61060134-61060153 | None:intergenic | 40.0% |
| !! | AGCACGTTGATTTGGGAATT+AGG | - | chr5.2:61058669-61058688 | None:intergenic | 40.0% |
| !! | GATGGATTATGAGGCTAAAC+AGG | + | chr5.2:61059468-61059487 | MS.gene50226:CDS | 40.0% |
| !! | TGAACAAAGAAGTGTCTGAG+TGG | + | chr5.2:61059335-61059354 | MS.gene50226:CDS | 40.0% |
| !! | TGTTTTGAGCCAAGGGTAAA+AGG | - | chr5.2:61059147-61059166 | None:intergenic | 40.0% |
| !!! | AGTCACGAAGCTAGTTTTCA+GGG | - | chr5.2:61059676-61059695 | None:intergenic | 40.0% |
| !!! | TTTTAGCTTAGACAAGGGAG+AGG | - | chr5.2:61059579-61059598 | None:intergenic | 40.0% |
| AACACTGTCATAACCCCTAG+TGG | - | chr5.2:61059410-61059429 | None:intergenic | 45.0% | |
| AATGACTGGGTCTTCTGTCA+TGG | + | chr5.2:61058916-61058935 | MS.gene50226:CDS | 45.0% | |
| ACGTGCTGGAATAAGTTACG+GGG | + | chr5.2:61058682-61058701 | MS.gene50226:intron | 45.0% | |
| CAGATACAGTGAACTTCAGG+CGG | + | chr5.2:61060423-61060442 | MS.gene50226:CDS | 45.0% | |
| CATGAGACCATGAATGTGGA+AGG | + | chr5.2:61058360-61058379 | MS.gene50226:CDS | 45.0% | |
| CCAGGAGCAGAAACAAAAGT+TGG | - | chr5.2:61056232-61056251 | None:intergenic | 45.0% | |
| CTCAGATACATCAACCCAAC+CGG | - | chr5.2:61058481-61058500 | None:intergenic | 45.0% | |
| CTTCCACATTCATGGTCTCA+TGG | - | chr5.2:61058362-61058381 | None:intergenic | 45.0% | |
| GAAATCCCCTTCCACATTCA+TGG | - | chr5.2:61058370-61058389 | None:intergenic | 45.0% | |
| GGACAGATACAGTGAACTTC+AGG | + | chr5.2:61060420-61060439 | MS.gene50226:CDS | 45.0% | |
| GGACAGTAAAATACTGACCG+TGG | - | chr5.2:61058957-61058976 | None:intergenic | 45.0% | |
| GGACATACTCCTCAAACTGT+TGG | + | chr5.2:61059962-61059981 | MS.gene50226:CDS | 45.0% | |
| GGAGCAGAAACAAAAGTTGG+TGG | - | chr5.2:61056229-61056248 | None:intergenic | 45.0% | |
| GGGAAGAAACATTTACCGGT+TGG | + | chr5.2:61058463-61058482 | MS.gene50226:CDS | 45.0% | |
| GGGACCTTGGAATTTAGTGA+AGG | + | chr5.2:61058539-61058558 | MS.gene50226:CDS | 45.0% | |
| GTAAAATACTGACCGTGGTG+AGG | - | chr5.2:61058952-61058971 | None:intergenic | 45.0% | |
| GTAGATGTTGGAATGTCCAG+TGG | + | chr5.2:61060237-61060256 | MS.gene50226:CDS | 45.0% | |
| TAACCCCTAGTGGCAATGAA+AGG | - | chr5.2:61059400-61059419 | None:intergenic | 45.0% | |
| TGAGACCATGAATGTGGAAG+GGG | + | chr5.2:61058362-61058381 | MS.gene50226:CDS | 45.0% | |
| TTGCCCGATCAATCCTCTTT+CGG | + | chr5.2:61058839-61058858 | MS.gene50226:CDS | 45.0% | |
| ! | AGCAGTTGATGCTAAGGCAA+TGG | + | chr5.2:61059934-61059953 | MS.gene50226:CDS | 45.0% |
| ! | AGTTGATGCTAAGGCAATGG+TGG | + | chr5.2:61059937-61059956 | MS.gene50226:CDS | 45.0% |
| ! | GGGGTTATGACAGTGTTGTT+TGG | + | chr5.2:61059413-61059432 | MS.gene50226:CDS | 45.0% |
| ! | GTAGGCCTTTGATTTACCTC+AGG | - | chr5.2:61060279-61060298 | None:intergenic | 45.0% |
| !! | AGCTCAACTGTTTTGAGCCA+AGG | - | chr5.2:61059155-61059174 | None:intergenic | 45.0% |
| !! | GAAAGAGAGGTGTTGTTACG+AGG | - | chr5.2:61056103-61056122 | None:intergenic | 45.0% |
| !! | GCTCAACTGTTTTGAGCCAA+GGG | - | chr5.2:61059154-61059173 | None:intergenic | 45.0% |
| !! | GGGTTGATGTATCTGAGAAG+TGG | + | chr5.2:61058484-61058503 | MS.gene50226:CDS | 45.0% |
| !!! | CCAACTTTTGTTTCTGCTCC+TGG | + | chr5.2:61056229-61056248 | MS.gene50226:CDS | 45.0% |
| !!! | CGAAGCTAGTTTTCAGGGAA+AGG | - | chr5.2:61059671-61059690 | None:intergenic | 45.0% |
| !!! | GAGTCACGAAGCTAGTTTTC+AGG | - | chr5.2:61059677-61059696 | None:intergenic | 45.0% |
| AGCATATGGCGCGTAGATGT+TGG | + | chr5.2:61060225-61060244 | MS.gene50226:CDS | 50.0% | |
| AGGCCGAAAGAGGATTGATC+GGG | - | chr5.2:61058845-61058864 | None:intergenic | 50.0% | |
| CAAGAAGTCATTGGGGACCT+TGG | + | chr5.2:61058526-61058545 | MS.gene50226:CDS | 50.0% | |
| CAGGCCGAAAGAGGATTGAT+CGG | - | chr5.2:61058846-61058865 | None:intergenic | 50.0% | |
| CGAGGATGAGGATGAGAAGA+TGG | - | chr5.2:61056085-61056104 | None:intergenic | 50.0% | |
| GAAAGGTGGAGCTGTGTTTC+AGG | + | chr5.2:61057791-61057810 | MS.gene50226:CDS | 50.0% | |
| GATGCTAAGGCAATGGTGGT+GGG | + | chr5.2:61059941-61059960 | MS.gene50226:CDS | 50.0% | |
| GATGGTCAAGACTTGTGGAC+TGG | + | chr5.2:61057265-61057284 | MS.gene50226:CDS | 50.0% | |
| GCTCTGATGGTCAAGACTTG+TGG | + | chr5.2:61057260-61057279 | MS.gene50226:CDS | 50.0% | |
| GGATGAGAAGATGGTGAGAG+TGG | - | chr5.2:61056076-61056095 | None:intergenic | 50.0% | |
| TGATGCTAAGGCAATGGTGG+TGG | + | chr5.2:61059940-61059959 | MS.gene50226:CDS | 50.0% | |
| ! | GCTGCAAGCAGTTGATGCTA+AGG | + | chr5.2:61059928-61059947 | MS.gene50226:CDS | 50.0% |
| !! | AAGGCATGGTGTTGCACTCA+AGG | + | chr5.2:61058891-61058910 | MS.gene50226:CDS | 50.0% |
| !! | GAGGTGTTGTTACGAGGATG+AGG | - | chr5.2:61056097-61056116 | None:intergenic | 50.0% |
| ACTGACCGTGGTGAGGAAGA+AGG | - | chr5.2:61058945-61058964 | None:intergenic | 55.0% | |
| CAATCCTCTTTCGGCCTGGT+GGG | + | chr5.2:61058848-61058867 | MS.gene50226:CDS | 55.0% | |
| CCAATGATCGCAGCAAGGAC+AGG | - | chr5.2:61057755-61057774 | None:intergenic | 55.0% | |
| CCTGTCCTTGCTGCGATCAT+TGG | + | chr5.2:61057752-61057771 | MS.gene50226:CDS | 55.0% | |
| CGATCAATCCTCTTTCGGCC+TGG | + | chr5.2:61058844-61058863 | MS.gene50226:CDS | 55.0% | |
| GACTGGGTCTTCTGTCATGG+CGG | + | chr5.2:61058919-61058938 | MS.gene50226:CDS | 55.0% | |
| TCAATCCTCTTTCGGCCTGG+TGG | + | chr5.2:61058847-61058866 | MS.gene50226:CDS | 55.0% | |
| TGTCAGTGCAGTGTCGTGTC+TGG | - | chr5.2:61059642-61059661 | None:intergenic | 55.0% | |
| ! | GCTGGTGTGTTGAGCTCTGA+TGG | + | chr5.2:61057247-61057266 | MS.gene50226:CDS | 55.0% |
| !! | GGTCAAGACTTGTGGACTGG+TGG | + | chr5.2:61057268-61057287 | MS.gene50226:CDS | 55.0% |
| CACTGGCGTGTGAGCTTGCA+AGG | + | chr5.2:61058872-61058891 | MS.gene50226:CDS | 60.0% | |
| CCAGCGAGAATAGTGCGACC+AGG | - | chr5.2:61056250-61056269 | None:intergenic | 60.0% | |
| CCTGGTCGCACTATTCTCGC+TGG | + | chr5.2:61056247-61056266 | MS.gene50226:CDS | 60.0% | |
| CTTGCAAGCTCACACGCCAG+TGG | - | chr5.2:61058874-61058893 | None:intergenic | 60.0% | |
| GCGTGTGAGCTTGCAAGGCA+TGG | + | chr5.2:61058877-61058896 | MS.gene50226:CDS | 60.0% | |
| GGCGGCCTTCTTCCTCACCA+CGG | + | chr5.2:61058937-61058956 | MS.gene50226:CDS | 65.0% | |
| GTGGCCCACCAGGCCGAAAG+AGG | - | chr5.2:61058855-61058874 | None:intergenic | 70.0% | |
| TCACACGCCAGTGGCCCACC+AGG | - | chr5.2:61058865-61058884 | None:intergenic | 70.0% | |
| ! | CTTTCGGCCTGGTGGGCCAC+TGG | + | chr5.2:61058855-61058874 | MS.gene50226:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 61056043 | 61060459 | 61056043 | ID=MS.gene50226 |
| chr5.2 | mRNA | 61056043 | 61060459 | 61056043 | ID=MS.gene50226.t1;Parent=MS.gene50226 |
| chr5.2 | exon | 61056043 | 61056268 | 61056043 | ID=MS.gene50226.t1.exon1;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61056043 | 61056268 | 61056043 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61057197 | 61057297 | 61057197 | ID=MS.gene50226.t1.exon2;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61057197 | 61057297 | 61057197 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61057699 | 61057812 | 61057699 | ID=MS.gene50226.t1.exon3;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61057699 | 61057812 | 61057699 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61058348 | 61058560 | 61058348 | ID=MS.gene50226.t1.exon4;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61058348 | 61058560 | 61058348 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61058823 | 61058958 | 61058823 | ID=MS.gene50226.t1.exon5;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61058823 | 61058958 | 61058823 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61059314 | 61059489 | 61059314 | ID=MS.gene50226.t1.exon6;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61059314 | 61059489 | 61059314 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61059905 | 61059993 | 61059905 | ID=MS.gene50226.t1.exon7;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61059905 | 61059993 | 61059905 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61060212 | 61060281 | 61060212 | ID=MS.gene50226.t1.exon8;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61060212 | 61060281 | 61060212 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| chr5.2 | exon | 61060373 | 61060459 | 61060373 | ID=MS.gene50226.t1.exon9;Parent=MS.gene50226.t1 |
| chr5.2 | CDS | 61060373 | 61060459 | 61060373 | ID=cds.MS.gene50226.t1;Parent=MS.gene50226.t1 |
| Gene Sequence |
| Protein sequence |
