Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62986.t1 | XP_013466516.1 | 93.6 | 236 | 14 | 1 | 1 | 235 | 1 | 236 | 1.20E-96 | 362.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62986.t1 | A0A072VFH3 | 93.6 | 236 | 14 | 1 | 1 | 235 | 1 | 236 | 8.4e-97 | 362.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene62986 | 0.833146 | 6.31E-56 | -1.69E-46 |
| MS.gene049173 | MS.gene62986 | 0.854531 | 1.16E-61 | -1.69E-46 |
| MS.gene049217 | MS.gene62986 | 0.845679 | 3.49E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene62986 | 0.838102 | 3.51E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene62986 | 0.887051 | 2.00E-72 | -1.69E-46 |
| MS.gene049320 | MS.gene62986 | 0.871258 | 7.84E-67 | -1.69E-46 |
| MS.gene049614 | MS.gene62986 | 0.819193 | 1.32E-52 | -1.69E-46 |
| MS.gene049627 | MS.gene62986 | 0.860657 | 1.77E-63 | -1.69E-46 |
| MS.gene050163 | MS.gene62986 | 0.905766 | 3.03E-80 | -1.69E-46 |
| MS.gene050165 | MS.gene62986 | 0.901667 | 2.13E-78 | -1.69E-46 |
| MS.gene050333 | MS.gene62986 | 0.909042 | 8.81E-82 | -1.69E-46 |
| MS.gene050353 | MS.gene62986 | -0.826161 | 3.16E-54 | -1.69E-46 |
| MS.gene050444 | MS.gene62986 | 0.805934 | 1.05E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene62986 | 0.861104 | 1.30E-63 | -1.69E-46 |
| MS.gene050518 | MS.gene62986 | 0.828234 | 1.01E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene62986 | 0.858839 | 6.25E-63 | -1.69E-46 |
| MS.gene050675 | MS.gene62986 | 0.834567 | 2.78E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene62986 | 0.825279 | 5.11E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene62986 | 0.8519 | 6.56E-61 | -1.69E-46 |
| MS.gene050770 | MS.gene62986 | 0.854103 | 1.54E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene62986 | 0.838923 | 2.16E-57 | -1.69E-46 |
| MS.gene050876 | MS.gene62986 | 0.808647 | 2.79E-50 | -1.69E-46 |
| MS.gene05087 | MS.gene62986 | 0.807042 | 6.13E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene62986 | 0.829636 | 4.61E-55 | -1.69E-46 |
| MS.gene05100 | MS.gene62986 | 0.888211 | 7.22E-73 | -1.69E-46 |
| MS.gene051228 | MS.gene62986 | 0.840888 | 6.63E-58 | -1.69E-46 |
| MS.gene051434 | MS.gene62986 | 0.833519 | 5.09E-56 | -1.69E-46 |
| MS.gene051564 | MS.gene62986 | 0.852257 | 5.20E-61 | -1.69E-46 |
| MS.gene051566 | MS.gene62986 | 0.849142 | 3.91E-60 | -1.69E-46 |
| MS.gene051694 | MS.gene62986 | 0.844416 | 7.67E-59 | -1.69E-46 |
| MS.gene051810 | MS.gene62986 | 0.861799 | 7.96E-64 | -1.69E-46 |
| MS.gene051858 | MS.gene62986 | 0.8292 | 5.88E-55 | -1.69E-46 |
| MS.gene051949 | MS.gene62986 | 0.889104 | 3.27E-73 | -1.69E-46 |
| MS.gene052164 | MS.gene62986 | 0.801699 | 7.96E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene62986 | 0.861459 | 1.01E-63 | -1.69E-46 |
| MS.gene052379 | MS.gene62986 | 0.838531 | 2.72E-57 | -1.69E-46 |
| MS.gene052670 | MS.gene62986 | 0.822267 | 2.60E-53 | -1.69E-46 |
| MS.gene052916 | MS.gene62986 | 0.852811 | 3.61E-61 | -1.69E-46 |
| MS.gene053009 | MS.gene62986 | 0.803167 | 3.97E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene62986 | 0.851097 | 1.11E-60 | -1.69E-46 |
| MS.gene053286 | MS.gene62986 | 0.851008 | 1.17E-60 | -1.69E-46 |
| MS.gene053322 | MS.gene62986 | 0.840594 | 7.91E-58 | -1.69E-46 |
| MS.gene053420 | MS.gene62986 | -0.801432 | 9.03E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene62986 | 0.813185 | 2.91E-51 | -1.69E-46 |
| MS.gene054376 | MS.gene62986 | 0.826519 | 2.60E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene62986 | 0.848452 | 6.07E-60 | -1.69E-46 |
| MS.gene054616 | MS.gene62986 | -0.82892 | 6.87E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene62986 | 0.888646 | 4.91E-73 | -1.69E-46 |
| MS.gene054802 | MS.gene62986 | 0.801791 | 7.62E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene62986 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene62986 | 0.804196 | 2.43E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene62986 | 0.854425 | 1.24E-61 | -1.69E-46 |
| MS.gene055154 | MS.gene62986 | -0.814299 | 1.65E-51 | -1.69E-46 |
| MS.gene055212 | MS.gene62986 | 0.831902 | 1.28E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene62986 | 0.879621 | 1.07E-69 | -1.69E-46 |
| MS.gene055397 | MS.gene62986 | 0.834281 | 3.28E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene62986 | 0.862446 | 5.04E-64 | -1.69E-46 |
| MS.gene055502 | MS.gene62986 | 0.840709 | 7.38E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene62986 | 0.821577 | 3.75E-53 | -1.69E-46 |
| MS.gene055634 | MS.gene62986 | 0.828366 | 9.36E-55 | -1.69E-46 |
| MS.gene055636 | MS.gene62986 | 0.83952 | 1.51E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene62986 | 0.857278 | 1.82E-62 | -1.69E-46 |
| MS.gene055647 | MS.gene62986 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene62986 | 0.844373 | 7.87E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene62986 | 0.813157 | 2.95E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene62986 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene62986 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene62986 | 0.805102 | 1.57E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene62986 | 0.843181 | 1.64E-58 | -1.69E-46 |
| MS.gene056374 | MS.gene62986 | 0.859551 | 3.83E-63 | -1.69E-46 |
| MS.gene056409 | MS.gene62986 | 0.804814 | 1.80E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene62986 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene62986 | 0.810634 | 1.05E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene62986 | 0.814158 | 1.78E-51 | -1.69E-46 |
| MS.gene056549 | MS.gene62986 | 0.830807 | 2.39E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene62986 | 0.877734 | 4.95E-69 | -1.69E-46 |
| MS.gene056692 | MS.gene62986 | 0.853269 | 2.67E-61 | -1.69E-46 |
| MS.gene057129 | MS.gene62986 | 0.851975 | 6.25E-61 | -1.69E-46 |
| MS.gene057246 | MS.gene62986 | 0.811589 | 6.49E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene62986 | 0.807453 | 5.02E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene62986 | 0.818467 | 1.93E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene62986 | 0.819041 | 1.43E-52 | -1.69E-46 |
| MS.gene057986 | MS.gene62986 | 0.804963 | 1.68E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene62986 | 0.822011 | 2.98E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene62986 | 0.860281 | 2.30E-63 | -1.69E-46 |
| MS.gene058544 | MS.gene62986 | 0.81285 | 3.44E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene62986 | 0.832407 | 9.62E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene62986 | 0.872663 | 2.68E-67 | -1.69E-46 |
| MS.gene059022 | MS.gene62986 | 0.881626 | 2.05E-70 | -1.69E-46 |
| MS.gene059023 | MS.gene62986 | 0.804124 | 2.51E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene62986 | 0.8445 | 7.28E-59 | -1.69E-46 |
| MS.gene05913 | MS.gene62986 | 0.810591 | 1.07E-50 | -1.69E-46 |
| MS.gene059479 | MS.gene62986 | -0.809021 | 2.32E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene62986 | 0.827439 | 1.56E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene62986 | 0.877456 | 6.19E-69 | -1.69E-46 |
| MS.gene059718 | MS.gene62986 | 0.858025 | 1.09E-62 | -1.69E-46 |
| MS.gene059801 | MS.gene62986 | 0.821464 | 3.98E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene62986 | 0.819919 | 9.02E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene62986 | 0.832177 | 1.10E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene62986 | 0.842495 | 2.50E-58 | -1.69E-46 |
| MS.gene060193 | MS.gene62986 | 0.801872 | 7.33E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene62986 | 0.855666 | 5.41E-62 | -1.69E-46 |
| MS.gene060762 | MS.gene62986 | 0.847971 | 8.25E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene62986 | 0.833433 | 5.35E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene62986 | 0.879367 | 1.32E-69 | -1.69E-46 |
| MS.gene061171 | MS.gene62986 | 0.819871 | 9.25E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene62986 | 0.867077 | 1.79E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62986.t1 | MTR_1g030860 | 89.407 | 236 | 24 | 1 | 1 | 235 | 1 | 236 | 1.68e-138 | 388 |
| MS.gene62986.t1 | MTR_1g030870 | 87.143 | 70 | 9 | 0 | 1 | 70 | 1 | 70 | 1.93e-36 | 124 |
| MS.gene62986.t1 | MTR_8g077030 | 36.979 | 192 | 104 | 4 | 47 | 235 | 348 | 525 | 2.40e-18 | 83.6 |
| MS.gene62986.t1 | MTR_6g012760 | 35.938 | 192 | 104 | 5 | 47 | 235 | 80 | 255 | 7.03e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62986.t1 | AT2G43630 | 36.316 | 190 | 104 | 3 | 56 | 235 | 80 | 262 | 1.81e-31 | 117 |
Find 59 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCAATGGACAAATTTA+AGG | 0.142467 | 1.3:-16576733 | MS.gene62986:CDS |
| TAAGCGTATCATGGTAAAAT+TGG | 0.154842 | 1.3:-16575850 | MS.gene62986:CDS |
| ATAAGAGATAAACCGTTATT+TGG | 0.163192 | 1.3:-16577847 | MS.gene62986:CDS |
| ATCTGGTGCCTTACTCTTTC+TGG | 0.178984 | 1.3:-16576529 | MS.gene62986:intron |
| CCAGGAGGAGGAGGAGAAGG+TGG | 0.330061 | 1.3:-16576630 | MS.gene62986:CDS |
| CCATGTTGGGGTATTCAAAA+TGG | 0.340619 | 1.3:+16575767 | None:intergenic |
| CCTCTTCGTGCTGGTGGAAA+AGG | 0.365292 | 1.3:-16577808 | MS.gene62986:CDS |
| CAGGATCATACCACCATGTT+GGG | 0.367552 | 1.3:+16575754 | None:intergenic |
| CACCAGATGCGAAAATTGTT+TGG | 0.372513 | 1.3:+16576544 | None:intergenic |
| TAAGAGATAAACCGTTATTT+GGG | 0.380799 | 1.3:-16577846 | MS.gene62986:CDS |
| AATGCAATGGACAAATTTAA+GGG | 0.386519 | 1.3:-16576732 | MS.gene62986:CDS |
| CCACCTTCTCCTCCTCCTCC+TGG | 0.389125 | 1.3:+16576630 | None:intergenic |
| TTACGGAAGCAAATTCAAAA+AGG | 0.403502 | 1.3:-16576690 | MS.gene62986:CDS |
| TTAAGGTTTATAGTTGGCTT+AGG | 0.406725 | 1.3:-16575888 | MS.gene62986:CDS |
| TAAACTCTTTCCCTCAGATT+CGG | 0.418783 | 1.3:-16577879 | MS.gene62986:CDS |
| AGGAGGAGGAGGAGAAGGTG+GGG | 0.423587 | 1.3:-16576628 | MS.gene62986:CDS |
| GGTGGTGGTGGCAGTCCCAA+TGG | 0.428342 | 1.3:-16576606 | MS.gene62986:CDS |
| GGTGGCAGTCCCAATGGCCC+TGG | 0.434107 | 1.3:-16576600 | MS.gene62986:CDS |
| AAAGATTTCAACCCAAATAA+CGG | 0.451388 | 1.3:+16577835 | None:intergenic |
| AAGCGTATCATGGTAAAATT+GGG | 0.456666 | 1.3:-16575849 | MS.gene62986:CDS |
| GGAGGAGGAGGAGAAGGTGG+GGG | 0.460530 | 1.3:-16576627 | MS.gene62986:CDS |
| TATTTAGACAATGGTGGAAG+TGG | 0.463016 | 1.3:-16576663 | MS.gene62986:CDS |
| CAAGTTACAGCATTTCAACT+TGG | 0.466062 | 1.3:-16577949 | MS.gene62986:CDS |
| CCACCAGGAGGAGGAGGAGA+AGG | 0.467905 | 1.3:-16576633 | MS.gene62986:CDS |
| AATCAATAGAAGAAGTATTA+CGG | 0.472780 | 1.3:-16576707 | MS.gene62986:CDS |
| TCAGATCCACCAGGGCCATT+GGG | 0.486936 | 1.3:+16576591 | None:intergenic |
| TTGAAGCCTCTTCGTGCTGG+TGG | 0.489434 | 1.3:-16577814 | MS.gene62986:CDS |
| ATCAGATCCACCAGGGCCAT+TGG | 0.489944 | 1.3:+16576590 | None:intergenic |
| AGAGTGTACCAGAAAGAGTA+AGG | 0.496063 | 1.3:+16576521 | None:intergenic |
| GCTGGTGGAAAAGGAATGTC+AGG | 0.500826 | 1.3:-16577799 | MS.gene62986:CDS |
| GTAAAGCCACCAGGAGGAGG+AGG | 0.507231 | 1.3:-16576639 | MS.gene62986:CDS |
| TCTTTGAAGCCTCTTCGTGC+TGG | 0.511134 | 1.3:-16577817 | MS.gene62986:CDS |
| CATTTGTAATAGATTGCCAT+GGG | 0.513734 | 1.3:+16576751 | None:intergenic |
| CAGGAGGAGGAGGAGAAGGT+GGG | 0.514543 | 1.3:-16576629 | MS.gene62986:CDS |
| GGAGTAAAGCCACCAGGAGG+AGG | 0.524624 | 1.3:-16576642 | MS.gene62986:CDS |
| TCAGGATCATACCACCATGT+TGG | 0.534231 | 1.3:+16575753 | None:intergenic |
| GCATTTGTAATAGATTGCCA+TGG | 0.534840 | 1.3:+16576750 | None:intergenic |
| GGCAGTCCCAATGGCCCTGG+TGG | 0.545700 | 1.3:-16576597 | MS.gene62986:CDS |
| ATGCTAATATTCCGAATCTG+AGG | 0.550958 | 1.3:+16577868 | None:intergenic |
| GCAATCTATTACAAATGCAA+TGG | 0.555704 | 1.3:-16576745 | MS.gene62986:CDS |
| TAGTCGAATTAAGCGTATCA+TGG | 0.558198 | 1.3:-16575859 | MS.gene62986:CDS |
| TAAAATTGGGAAAATTGTAC+CGG | 0.563003 | 1.3:-16575836 | MS.gene62986:CDS |
| GGTGAGTATTTAGACAATGG+TGG | 0.570123 | 1.3:-16576669 | MS.gene62986:CDS |
| ACTGCTGTACGAAAATCCTC+AGG | 0.570351 | 1.3:+16575735 | None:intergenic |
| TGCTAATATTCCGAATCTGA+GGG | 0.575319 | 1.3:+16577869 | None:intergenic |
| CCTTCTCCTCCTCCTCCTGG+TGG | 0.583094 | 1.3:+16576633 | None:intergenic |
| TCTTCATCATCAGATCCACC+AGG | 0.590752 | 1.3:+16576582 | None:intergenic |
| AAAGGTGAGTATTTAGACAA+TGG | 0.597947 | 1.3:-16576672 | MS.gene62986:CDS |
| TATCTATCTCATCATGAGCA+AGG | 0.607713 | 1.3:-16575937 | MS.gene62986:CDS |
| AACATGGTGGTATGATCCTG+AGG | 0.623546 | 1.3:-16575751 | MS.gene62986:CDS |
| GGAAGTGGAGTAAAGCCACC+AGG | 0.635749 | 1.3:-16576648 | MS.gene62986:CDS |
| AGGATCATACCACCATGTTG+GGG | 0.658146 | 1.3:+16575755 | None:intergenic |
| AATGTCAGGAAATAGTGATG+AGG | 0.666768 | 1.3:-16577785 | MS.gene62986:intron |
| ATAATAATCAGAATTCCCCA+TGG | 0.676568 | 1.3:-16576767 | MS.gene62986:intron |
| TGTACCGGAGTACGAAACAG+AGG | 0.680091 | 1.3:-16575821 | MS.gene62986:CDS |
| GAATTACTATGCATCAGATG+CGG | 0.684768 | 1.3:-16575709 | MS.gene62986:CDS |
| CTTCATCATCAGATCCACCA+GGG | 0.689052 | 1.3:+16576583 | None:intergenic |
| AGTGGAGTAAAGCCACCAGG+AGG | 0.725114 | 1.3:-16576645 | MS.gene62986:CDS |
| ATTTGTAATAGATTGCCATG+GGG | 0.741669 | 1.3:+16576752 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTTTTTTTCTTTTTAAA+TGG | - | chr1.3:16576455-16576474 | MS.gene62986:intron | 10.0% |
| !! | AAATTATAACTAAAAAGAAG+TGG | + | chr1.3:16575908-16575927 | None:intergenic | 15.0% |
| !!! | AAAAATTTTGATGTCAAATT+TGG | - | chr1.3:16577534-16577553 | MS.gene62986:intron | 15.0% |
| !!! | TAGTTAATGTTTTTGATTAA+TGG | - | chr1.3:16577302-16577321 | MS.gene62986:intron | 15.0% |
| !!! | AATCAATAGAAGAAGTATTA+CGG | - | chr1.3:16576955-16576974 | MS.gene62986:intron | 20.0% |
| !!! | AATTTTGCTTGTTATTATTG+AGG | - | chr1.3:16575923-16575942 | MS.gene62986:CDS | 20.0% |
| !!! | ATTAAGAGTTGATAGAATAT+AGG | - | chr1.3:16577473-16577492 | MS.gene62986:intron | 20.0% |
| !!! | ATTTTGCTTGTTATTATTGA+GGG | - | chr1.3:16575924-16575943 | MS.gene62986:CDS | 20.0% |
| !!! | ATTTTTATAATAGACAACCT+AGG | - | chr1.3:16576635-16576654 | MS.gene62986:CDS | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | - | chr1.3:16576420-16576439 | MS.gene62986:intron | 20.0% |
| !!! | TTTTATCTAAAGATGCATTT+AGG | - | chr1.3:16576149-16576168 | MS.gene62986:intron | 20.0% |
| !!! | TTTTTATAATAGACAACCTA+GGG | - | chr1.3:16576636-16576655 | MS.gene62986:CDS | 20.0% |
| ! | AAAGATTTCAACCCAAATAA+CGG | + | chr1.3:16575830-16575849 | None:intergenic | 25.0% |
| ! | AAATGCAATGGACAAATTTA+AGG | - | chr1.3:16576929-16576948 | MS.gene62986:intron | 25.0% |
| ! | AATGCAATGGACAAATTTAA+GGG | - | chr1.3:16576930-16576949 | MS.gene62986:intron | 25.0% |
| ! | ATAAGAGATAAACCGTTATT+TGG | - | chr1.3:16575815-16575834 | MS.gene62986:CDS | 25.0% |
| ! | ATAATTTCTCTTCAGAAATG+AGG | + | chr1.3:16577504-16577523 | None:intergenic | 25.0% |
| ! | CTGTAGTACAAATATTGAAA+GGG | - | chr1.3:16576608-16576627 | MS.gene62986:CDS | 25.0% |
| ! | TAAAATTGGGAAAATTGTAC+CGG | - | chr1.3:16577826-16577845 | MS.gene62986:CDS | 25.0% |
| ! | TAAGAGATAAACCGTTATTT+GGG | - | chr1.3:16575816-16575835 | MS.gene62986:CDS | 25.0% |
| ! | TCTGTAGTACAAATATTGAA+AGG | - | chr1.3:16576607-16576626 | MS.gene62986:CDS | 25.0% |
| !!! | GAATCATGTTATTTCTCAAT+CGG | - | chr1.3:16576013-16576032 | MS.gene62986:intron | 25.0% |
| !!! | GACTTTTTAAGGTTTATAGT+TGG | - | chr1.3:16577768-16577787 | MS.gene62986:intron | 25.0% |
| !!! | GCACAATTTTTGACTTTTTA+AGG | - | chr1.3:16577757-16577776 | MS.gene62986:intron | 25.0% |
| !!! | GGTTATTTTAGTTTATCTAC+TGG | - | chr1.3:16576186-16576205 | MS.gene62986:intron | 25.0% |
| !!! | TATACAAACAAGGTCTTATT+AGG | - | chr1.3:16576430-16576449 | MS.gene62986:intron | 25.0% |
| !!! | TCTGAATTTTGAAAACTCAA+AGG | - | chr1.3:16577241-16577260 | MS.gene62986:intron | 25.0% |
| !!! | TTGTTTGGTTTTTAAAACGT+TGG | - | chr1.3:16576816-16576835 | MS.gene62986:intron | 25.0% |
| AAAGGTGAGTATTTAGACAA+TGG | - | chr1.3:16576990-16577009 | MS.gene62986:intron | 30.0% | |
| AAGCGTATCATGGTAAAATT+GGG | - | chr1.3:16577813-16577832 | MS.gene62986:CDS | 30.0% | |
| ACAAAATCAGACAGTTCAAT+TGG | + | chr1.3:16576800-16576819 | None:intergenic | 30.0% | |
| ACTCAAAGGAGAAAGTTAAA+TGG | - | chr1.3:16577255-16577274 | MS.gene62986:intron | 30.0% | |
| AGAATTTCCTAATAAGACCT+GGG | + | chr1.3:16576440-16576459 | None:intergenic | 30.0% | |
| ATAATAATCAGAATTCCCCA+TGG | - | chr1.3:16576895-16576914 | MS.gene62986:intron | 30.0% | |
| ATCAACTCTTAATCATGTCA+AGG | + | chr1.3:16577466-16577485 | None:intergenic | 30.0% | |
| ATTTGTAATAGATTGCCATG+GGG | + | chr1.3:16576913-16576932 | None:intergenic | 30.0% | |
| CATTTGTAATAGATTGCCAT+GGG | + | chr1.3:16576914-16576933 | None:intergenic | 30.0% | |
| GCAATCTATTACAAATGCAA+TGG | - | chr1.3:16576917-16576936 | MS.gene62986:intron | 30.0% | |
| GTTTGAGCATTAAGAAATAG+TGG | + | chr1.3:16577685-16577704 | None:intergenic | 30.0% | |
| TAAGCGTATCATGGTAAAAT+TGG | - | chr1.3:16577812-16577831 | MS.gene62986:CDS | 30.0% | |
| TCAAAAGTCTTCTCATATAC+CGG | + | chr1.3:16577402-16577421 | None:intergenic | 30.0% | |
| TCAACTCTTAATCATGTCAA+GGG | + | chr1.3:16577465-16577484 | None:intergenic | 30.0% | |
| TCATGATGAGATAGATATAC+TGG | + | chr1.3:16577722-16577741 | None:intergenic | 30.0% | |
| TTACGGAAGCAAATTCAAAA+AGG | - | chr1.3:16576972-16576991 | MS.gene62986:intron | 30.0% | |
| ! | GTACTACTGTTCAGTTATTT+TGG | + | chr1.3:16576778-16576797 | None:intergenic | 30.0% |
| ! | TTAAGGTTTATAGTTGGCTT+AGG | - | chr1.3:16577774-16577793 | MS.gene62986:intron | 30.0% |
| ! | TTGAACTGTCTGATTTTGTT+TGG | - | chr1.3:16576801-16576820 | MS.gene62986:intron | 30.0% |
| !! | AACTATAACCCTTTTTAGCA+TGG | + | chr1.3:16577287-16577306 | None:intergenic | 30.0% |
| !! | ATTTAGGACTGGTTTAGATT+GGG | - | chr1.3:16576165-16576184 | MS.gene62986:intron | 30.0% |
| AAAACATTGTTGCATACCCT+AGG | + | chr1.3:16576655-16576674 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGATTGTTT+GGG | - | chr1.3:16576212-16576231 | MS.gene62986:intron | 35.0% | |
| AATGTCAGGAAATAGTGATG+AGG | - | chr1.3:16575877-16575896 | MS.gene62986:CDS | 35.0% | |
| AATTTCCTAATAAGACCTGG+GGG | + | chr1.3:16576588-16576607 | None:intergenic | 35.0% | |
| ATGCTAATATTCCGAATCTG+AGG | + | chr1.3:16575797-16575816 | None:intergenic | 35.0% | |
| CAAGTTACAGCATTTCAACT+TGG | - | chr1.3:16575713-16575732 | MS.gene62986:CDS | 35.0% | |
| CAGAATTTCCTAATAAGACC+TGG | + | chr1.3:16576591-16576610 | None:intergenic | 35.0% | |
| CGGTATATGTGTAGTATATG+TGG | - | chr1.3:16577173-16577192 | MS.gene62986:intron | 35.0% | |
| GAATTACTATGCATCAGATG+CGG | - | chr1.3:16577953-16577972 | MS.gene62986:CDS | 35.0% | |
| GAATTTCCTAATAAGACCTG+GGG | + | chr1.3:16576589-16576608 | None:intergenic | 35.0% | |
| GCATTTGTAATAGATTGCCA+TGG | + | chr1.3:16576915-16576934 | None:intergenic | 35.0% | |
| GGACAAGTAAATTACTCATC+TGG | - | chr1.3:16577194-16577213 | MS.gene62986:intron | 35.0% | |
| TAAACTCTTTCCCTCAGATT+CGG | - | chr1.3:16575783-16575802 | MS.gene62986:CDS | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1.3:16576211-16576230 | MS.gene62986:intron | 35.0% | |
| TAATATTTACTCCTTCGTCC+TGG | - | chr1.3:16576504-16576523 | MS.gene62986:intron | 35.0% | |
| TAGTCGAATTAAGCGTATCA+TGG | - | chr1.3:16577803-16577822 | MS.gene62986:CDS | 35.0% | |
| TATCTATCTCATCATGAGCA+AGG | - | chr1.3:16577725-16577744 | MS.gene62986:intron | 35.0% | |
| TGCTAATATTCCGAATCTGA+GGG | + | chr1.3:16575796-16575815 | None:intergenic | 35.0% | |
| TTCTCTTCAGAAATGAGGAA+TGG | + | chr1.3:16577499-16577518 | None:intergenic | 35.0% | |
| ! | AATCACTGATGAGCACTTTT+TGG | - | chr1.3:16577866-16577885 | MS.gene62986:CDS | 35.0% |
| ! | TATGAGAAGACTTTTGAGCA+TGG | - | chr1.3:16577405-16577424 | MS.gene62986:intron | 35.0% |
| ! | TATTTAGACAATGGTGGAAG+TGG | - | chr1.3:16576999-16577018 | MS.gene62986:intron | 35.0% |
| ! | TCTAAAGATGCATTTAGGAC+TGG | - | chr1.3:16576154-16576173 | MS.gene62986:intron | 35.0% |
| !! | CATTTAGGACTGGTTTAGAT+TGG | - | chr1.3:16576164-16576183 | MS.gene62986:intron | 35.0% |
| !! | GTTGTTTTCATCAGCTACAA+TGG | + | chr1.3:16576295-16576314 | None:intergenic | 35.0% |
| !!! | CTACTGTTCAGTTATTTTGG+CGG | + | chr1.3:16576775-16576794 | None:intergenic | 35.0% |
| AAGTCTTCTCATATACCGGA+AGG | + | chr1.3:16577398-16577417 | None:intergenic | 40.0% | |
| AGAGTGTACCAGAAAGAGTA+AGG | + | chr1.3:16577144-16577163 | None:intergenic | 40.0% | |
| CACCAGATGCGAAAATTGTT+TGG | + | chr1.3:16577121-16577140 | None:intergenic | 40.0% | |
| GCAATTGAACCATTACTCAG+AGG | + | chr1.3:16576708-16576727 | None:intergenic | 40.0% | |
| GCTAACTATTGAAGTCCTTC+CGG | - | chr1.3:16577380-16577399 | MS.gene62986:intron | 40.0% | |
| GGAAGTAGCCATGCTAAAAA+GGG | - | chr1.3:16577276-16577295 | MS.gene62986:intron | 40.0% | |
| GGTGAGTATTTAGACAATGG+TGG | - | chr1.3:16576993-16577012 | MS.gene62986:intron | 40.0% | |
| TGGAAGTAGCCATGCTAAAA+AGG | - | chr1.3:16577275-16577294 | MS.gene62986:intron | 40.0% | |
| TGGTACACTCTCTTTCTCTT+CGG | - | chr1.3:16577153-16577172 | MS.gene62986:intron | 40.0% | |
| TTGTGAGATTGTTTGGGAGA+AGG | - | chr1.3:16576218-16576237 | MS.gene62986:intron | 40.0% | |
| ! | ACGCCATCAATTAGAAGTGT+CGG | + | chr1.3:16575977-16575996 | None:intergenic | 40.0% |
| ! | CCATGTTGGGGTATTCAAAA+TGG | + | chr1.3:16577898-16577917 | None:intergenic | 40.0% |
| ! | CCATTTTGAATACCCCAACA+TGG | - | chr1.3:16577895-16577914 | MS.gene62986:CDS | 40.0% |
| ! | TTTTCCTCTGTTTCGTACTC+CGG | + | chr1.3:16577848-16577867 | None:intergenic | 40.0% |
| ! | TTTTGAATACCCCAACATGG+TGG | - | chr1.3:16577898-16577917 | MS.gene62986:CDS | 40.0% |
| !! | TGATGAGCACTTTTTGGAGA+AGG | - | chr1.3:16577872-16577891 | MS.gene62986:CDS | 40.0% |
| AACATGGTGGTATGATCCTG+AGG | - | chr1.3:16577911-16577930 | MS.gene62986:CDS | 45.0% | |
| ACTGCTGTACGAAAATCCTC+AGG | + | chr1.3:16577930-16577949 | None:intergenic | 45.0% | |
| AGGATCATACCACCATGTTG+GGG | + | chr1.3:16577910-16577929 | None:intergenic | 45.0% | |
| ATCTGGTGCCTTACTCTTTC+TGG | - | chr1.3:16577133-16577152 | MS.gene62986:intron | 45.0% | |
| CAGGATCATACCACCATGTT+GGG | + | chr1.3:16577911-16577930 | None:intergenic | 45.0% | |
| CTTCATCATCAGATCCACCA+GGG | + | chr1.3:16577082-16577101 | None:intergenic | 45.0% | |
| GATAAGCAGTTGAAGGTCCT+GGG | + | chr1.3:16576536-16576555 | None:intergenic | 45.0% | |
| GCTAAGGGATAAGCAGTTGA+AGG | + | chr1.3:16576543-16576562 | None:intergenic | 45.0% | |
| GTGTTGTGTTCGTGCTTCAT+AGG | - | chr1.3:16576077-16576096 | MS.gene62986:intron | 45.0% | |
| TCAGGATCATACCACCATGT+TGG | + | chr1.3:16577912-16577931 | None:intergenic | 45.0% | |
| TCTCCAGTTCAACTTCTGGT+CGG | + | chr1.3:16576683-16576702 | None:intergenic | 45.0% | |
| TCTTCATCATCAGATCCACC+AGG | + | chr1.3:16577083-16577102 | None:intergenic | 45.0% | |
| ! | CGCCAAACAATTTTCGCATC+TGG | - | chr1.3:16577116-16577135 | MS.gene62986:intron | 45.0% |
| ! | GCACCGACACTTCTAATTGA+TGG | - | chr1.3:16575971-16575990 | MS.gene62986:intron | 45.0% |
| !! | AGCTCAACTGGTTTGAGCTA+AGG | + | chr1.3:16576559-16576578 | None:intergenic | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | + | chr1.3:16576558-16576577 | None:intergenic | 45.0% |
| CCTAATAAGACCTGGGGGTT+GGG | + | chr1.3:16576583-16576602 | None:intergenic | 50.0% | |
| CTGGAGAGACCTCTGAGTAA+TGG | - | chr1.3:16576696-16576715 | MS.gene62986:CDS | 50.0% | |
| GAACCGACCAGAAGTTGAAC+TGG | - | chr1.3:16576677-16576696 | MS.gene62986:CDS | 50.0% | |
| GCTGGTGGAAAAGGAATGTC+AGG | - | chr1.3:16575863-16575882 | MS.gene62986:CDS | 50.0% | |
| GGATAAGCAGTTGAAGGTCC+TGG | + | chr1.3:16576537-16576556 | None:intergenic | 50.0% | |
| GGTCTCTCCAGTTCAACTTC+TGG | + | chr1.3:16576687-16576706 | None:intergenic | 50.0% | |
| TCCTAATAAGACCTGGGGGT+TGG | + | chr1.3:16576584-16576603 | None:intergenic | 50.0% | |
| TGTACCGGAGTACGAAACAG+AGG | - | chr1.3:16577841-16577860 | MS.gene62986:CDS | 50.0% | |
| !! | TAGAAGTGTCGGTGCTACAG+AGG | + | chr1.3:16575966-16575985 | None:intergenic | 50.0% |
| !! | TCTTTGAAGCCTCTTCGTGC+TGG | - | chr1.3:16575845-16575864 | MS.gene62986:CDS | 50.0% |
| AGTGGAGTAAAGCCACCAGG+AGG | - | chr1.3:16577017-16577036 | MS.gene62986:intron | 55.0% | |
| ATCAGATCCACCAGGGCCAT+TGG | + | chr1.3:16577075-16577094 | None:intergenic | 55.0% | |
| GGAAGTGGAGTAAAGCCACC+AGG | - | chr1.3:16577014-16577033 | MS.gene62986:intron | 55.0% | |
| TCAGATCCACCAGGGCCATT+GGG | + | chr1.3:16577074-16577093 | None:intergenic | 55.0% | |
| TTGAAGCCTCTTCGTGCTGG+TGG | - | chr1.3:16575848-16575867 | MS.gene62986:CDS | 55.0% | |
| ! | CCTCTTCGTGCTGGTGGAAA+AGG | - | chr1.3:16575854-16575873 | MS.gene62986:CDS | 55.0% |
| ! | CCTTTTCCACCAGCACGAAG+AGG | + | chr1.3:16575857-16575876 | None:intergenic | 55.0% |
| !! | CCCAACCCCCAGGTCTTATT+AGG | - | chr1.3:16576580-16576599 | MS.gene62986:CDS | 55.0% |
| AGGAGGAGGAGGAGAAGGTG+GGG | - | chr1.3:16577034-16577053 | MS.gene62986:intron | 60.0% | |
| AGTTGAGCTACCCAACCCCC+AGG | - | chr1.3:16576570-16576589 | MS.gene62986:CDS | 60.0% | |
| CAGGAGGAGGAGGAGAAGGT+GGG | - | chr1.3:16577033-16577052 | MS.gene62986:intron | 60.0% | |
| CTGGGCTCAAACCAGGACGA+AGG | + | chr1.3:16576518-16576537 | None:intergenic | 60.0% | |
| GAAGGTCCTGGGCTCAAACC+AGG | + | chr1.3:16576525-16576544 | None:intergenic | 60.0% | |
| GGAGTAAAGCCACCAGGAGG+AGG | - | chr1.3:16577020-16577039 | MS.gene62986:intron | 60.0% | |
| GTAAAGCCACCAGGAGGAGG+AGG | - | chr1.3:16577023-16577042 | MS.gene62986:intron | 60.0% | |
| TGGGGGTTGGGTAGCTCAAC+TGG | + | chr1.3:16576571-16576590 | None:intergenic | 60.0% | |
| ! | CTTCGTCCTGGTTTGAGCCC+AGG | - | chr1.3:16576516-16576535 | MS.gene62986:intron | 60.0% |
| CCACCAGGAGGAGGAGGAGA+AGG | - | chr1.3:16577029-16577048 | MS.gene62986:intron | 65.0% | |
| CCACCTTCTCCTCCTCCTCC+TGG | + | chr1.3:16577035-16577054 | None:intergenic | 65.0% | |
| CCAGGAGGAGGAGGAGAAGG+TGG | - | chr1.3:16577032-16577051 | MS.gene62986:intron | 65.0% | |
| CCTTCTCCTCCTCCTCCTGG+TGG | + | chr1.3:16577032-16577051 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGAAGGTGG+GGG | - | chr1.3:16577035-16577054 | MS.gene62986:intron | 65.0% | |
| !! | GGTGGTGGTGGCAGTCCCAA+TGG | - | chr1.3:16577056-16577075 | MS.gene62986:intron | 65.0% |
| GGAGGAGAAGGTGGGGGTGG+TGG | - | chr1.3:16577041-16577060 | MS.gene62986:intron | 70.0% | |
| GGAGGAGGAGAAGGTGGGGG+TGG | - | chr1.3:16577038-16577057 | MS.gene62986:intron | 70.0% | |
| GGCAGTCCCAATGGCCCTGG+TGG | - | chr1.3:16577065-16577084 | MS.gene62986:intron | 70.0% | |
| GGTGGCAGTCCCAATGGCCC+TGG | - | chr1.3:16577062-16577081 | MS.gene62986:intron | 70.0% | |
| ! | GGAGAAGGTGGGGGTGGTGG+TGG | - | chr1.3:16577044-16577063 | MS.gene62986:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16575701 | 16577983 | 16575701 | ID=MS.gene62986 |
| chr1.3 | mRNA | 16575701 | 16577983 | 16575701 | ID=MS.gene62986.t1;Parent=MS.gene62986 |
| chr1.3 | exon | 16577786 | 16577983 | 16577786 | ID=MS.gene62986.t1.exon1;Parent=MS.gene62986.t1 |
| chr1.3 | CDS | 16577786 | 16577983 | 16577786 | ID=cds.MS.gene62986.t1;Parent=MS.gene62986.t1 |
| chr1.3 | exon | 16576530 | 16576778 | 16576530 | ID=MS.gene62986.t1.exon2;Parent=MS.gene62986.t1 |
| chr1.3 | CDS | 16576530 | 16576778 | 16576530 | ID=cds.MS.gene62986.t1;Parent=MS.gene62986.t1 |
| chr1.3 | exon | 16575701 | 16575961 | 16575701 | ID=MS.gene62986.t1.exon3;Parent=MS.gene62986.t1 |
| chr1.3 | CDS | 16575701 | 16575961 | 16575701 | ID=cds.MS.gene62986.t1;Parent=MS.gene62986.t1 |
| Gene Sequence |
| Protein sequence |
