AlfalfaGEDB | MS.gene69692

M. sativa cultivar XinJiangDaYe / MS.gene69692

KEGG: K01304
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69692.t1	XP_013446022.1	93.2	88	6	0	4	91	1	88	2.50E-39	171

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69692.t1	A0A392NV46	90.2	92	9	0	1	92	3	94	3.7e-40	173.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene69692	0.816153	6.40E-52	-1.69E-46
MS.gene04920	MS.gene69692	0.804031	2.63E-49	-1.69E-46
MS.gene049254	MS.gene69692	0.803772	2.97E-49	-1.69E-46
MS.gene049283	MS.gene69692	0.86213	6.30E-64	-1.69E-46
MS.gene049368	MS.gene69692	0.804256	2.36E-49	-1.69E-46
MS.gene049419	MS.gene69692	-0.800711	1.27E-48	-1.69E-46
MS.gene049499	MS.gene69692	0.820516	6.58E-53	-1.69E-46
MS.gene049786	MS.gene69692	0.807258	5.52E-50	-1.69E-46
MS.gene049801	MS.gene69692	0.801974	6.99E-49	-1.69E-46
MS.gene04998	MS.gene69692	0.803545	3.31E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69692.t1	MTR_8g065050	93.182	88	6	0	4	91	1	88	9.37e-57	174
MS.gene69692.t1	MTR_1g084740	55.914	93	37	3	4	92	1	93	2.65e-29	103
MS.gene69692.t1	MTR_1g084740	56.522	92	36	3	4	91	1	92	1.72e-28	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69692.t1	AT1G23440	64.045	89	32	0	4	92	1	89	3.96e-37	120
MS.gene69692.t1	AT1G23440	62.500	88	33	0	4	91	1	88	9.95e-35	118
MS.gene69692.t1	AT1G23440	62.500	88	33	0	4	91	1	88	9.95e-35	118
MS.gene69692.t1	AT1G56700	52.809	89	41	1	4	91	1	89	7.33e-28	100
MS.gene69692.t1	AT1G56700	52.809	89	41	1	4	91	1	89	7.33e-28	100
MS.gene69692.t1	AT1G56700	52.809	89	41	1	4	91	1	89	7.33e-28	100
MS.gene69692.t1	AT1G56700	43.333	60	33	1	33	91	1	60	3.39e-11	57.0

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Find 25 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACAATTCATGTAAC+TGG	0.219675	8.3:+36986879	MS.gene69692:CDS
AAATTACAATTCATGTAACT+GGG	0.560230	8.3:+36986880	MS.gene69692:CDS
AAGAATTCAGAATTCAGAAA+TGG	0.372313	8.3:+36986839	None:intergenic
AAGTTGCACTATTCTTGACG+TGG	0.643245	8.3:+36987007	MS.gene69692:CDS
AATTCAGAAATGGGATCTGA+AGG	0.532059	8.3:+36986849	MS.gene69692:CDS
ACTGGGTTTAAGAAGTTTCA+AGG	0.460584	8.3:+36986897	MS.gene69692:CDS
AGAATTCAGAATTCAGAAAT+GGG	0.477928	8.3:+36986840	None:intergenic
AGAGTAATGCAAATGTTGTT+TGG	0.313563	8.3:+36987096	MS.gene69692:CDS
AGATTATTGTTAATAATCTG+AGG	0.547702	8.3:+36986940	MS.gene69692:CDS
AGGGATTATGTTGAAAAGAA+AGG	0.499009	8.3:+36986960	MS.gene69692:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGTAATGCAAATGTTGTT+TGG	+	chr8.3:36987096-36987115	MS.gene69692:CDS	30.0%
AGGGATTATGTTGAAAAGAA+AGG	+	chr8.3:36986960-36986979	MS.gene69692:CDS	30.0%
ATAATCTCTGTAGGGTTTAT+TGG	-	chr8.3:36986927-36986946	None:intergenic	30.0%
AATTCAGAAATGGGATCTGA+AGG	+	chr8.3:36986849-36986868	MS.gene69692:CDS	35.0%
ACTGGGTTTAAGAAGTTTCA+AGG	+	chr8.3:36986897-36986916	MS.gene69692:CDS	35.0%
ATTCAGAAATGGGATCTGAA+GGG	+	chr8.3:36986850-36986869	MS.gene69692:CDS	35.0%
AAGTTGCACTATTCTTGACG+TGG	+	chr8.3:36987007-36987026	MS.gene69692:CDS	40.0%
GAAAAGAAAGGTCTTCCAGT+TGG	+	chr8.3:36986972-36986991	MS.gene69692:CDS	40.0%
GGAATCTGTTGTGTCGAAAA+CGG	+	chr8.3:36987067-36987086	MS.gene69692:CDS	40.0%
TTTCGACACAACAGATTCCA+TGG	-	chr8.3:36987066-36987085	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	36986849	36987127	36986849	ID=MS.gene69692
chr8.3	mRNA	36986849	36987127	36986849	ID=MS.gene69692.t1;Parent=MS.gene69692
chr8.3	exon	36986849	36987127	36986849	ID=MS.gene69692.t1.exon1;Parent=MS.gene69692.t1
chr8.3	CDS	36986849	36987127	36986849	ID=cds.MS.gene69692.t1;Parent=MS.gene69692.t1

Gene Sequence	>MS.gene69692 AATTCAGAAATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGATTATTGTTAATAATCTGAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGAGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACAGAGAGTAATGCAAATGTTGTTTGGGTTAGTTAG
Protein sequence	>MS.gene69692.t1 NSEMGSEGPKKITIHVTGFKKFQGVPINPTEIIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNANVVWVS