AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014543.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014543.01.T01 MTR_3g460770 97.653 554 12 1 1 554 1 553 0.0 1104
MsG0380014543.01.T01 MTR_2g105570 38.787 544 313 9 10 538 7 545 5.55e-136 406
MsG0380014543.01.T01 MTR_4g005750 39.179 536 314 7 11 538 7 538 5.26e-129 388
MsG0380014543.01.T01 MTR_5g007640 37.523 541 317 8 11 538 51 583 2.67e-125 380
MsG0380014543.01.T01 MTR_4g128337 38.519 540 318 6 10 540 12 546 3.20e-120 365
MsG0380014543.01.T01 MTR_4g057730 35.240 542 333 8 13 545 9 541 4.70e-119 362
MsG0380014543.01.T01 MTR_2g095510 36.245 538 330 7 12 542 8 539 3.36e-116 355
MsG0380014543.01.T01 MTR_1g026310 34.426 549 318 9 8 532 20 550 4.24e-113 347
MsG0380014543.01.T01 MTR_1g090737 38.048 502 299 5 36 532 62 556 1.00e-112 347
MsG0380014543.01.T01 MTR_1g063120 35.424 542 320 11 23 542 22 555 9.44e-104 323
MsG0380014543.01.T01 MTR_8g039720 34.862 545 323 12 8 532 17 549 7.61e-102 318
MsG0380014543.01.T01 MTR_4g077900 37.190 484 286 9 70 542 2 478 3.41e-98 306
MsG0380014543.01.T01 MTR_1g063110 33.962 530 333 9 16 532 13 538 4.43e-97 306
MsG0380014543.01.T01 MTR_5g027480 34.637 537 335 8 15 542 26 555 4.49e-97 306
MsG0380014543.01.T01 MTR_4g057730 34.402 468 293 7 13 471 9 471 1.65e-96 302
MsG0380014543.01.T01 MTR_3g088870 34.800 500 300 8 44 532 64 548 8.22e-95 300
MsG0380014543.01.T01 MTR_3g088880 35.354 495 301 9 44 532 65 546 3.11e-94 298
MsG0380014543.01.T01 MTR_5g027500 33.761 545 341 8 15 542 27 568 5.49e-88 283
MsG0380014543.01.T01 MTR_1g073180 35.433 508 313 9 34 539 37 531 1.99e-86 278
MsG0380014543.01.T01 MTR_4g057730 32.960 446 285 7 13 449 9 449 1.65e-85 273
MsG0380014543.01.T01 MTR_2g095510 33.708 445 282 7 12 449 8 446 1.92e-81 262
MsG0380014543.01.T01 MTR_1g073180 34.927 481 298 9 34 512 59 526 1.05e-77 254
MsG0380014543.01.T01 MTR_3g035130 27.711 498 332 12 57 541 32 514 2.01e-53 189
MsG0380014543.01.T01 MTR_1569s0010 27.043 514 333 10 57 535 22 528 8.33e-53 188
MsG0380014543.01.T01 MTR_1g026430 28.250 400 245 9 8 383 20 401 5.18e-52 183
MsG0380014543.01.T01 MTR_1g026470 28.358 402 246 9 8 385 20 403 8.30e-52 182
MsG0380014543.01.T01 MTR_0803s0020 25.963 493 321 13 59 528 263 734 2.45e-42 163
MsG0380014543.01.T01 MTR_3g035130 27.752 436 287 12 57 479 32 452 2.45e-41 155
MsG0380014543.01.T01 MTR_5g008800 26.542 535 344 16 34 537 19 535 8.63e-41 155
MsG0380014543.01.T01 MTR_5g076240 28.185 518 317 17 58 536 41 542 2.35e-40 154
MsG0380014543.01.T01 MTR_8g074040 23.881 536 359 15 34 537 61 579 1.93e-38 149
MsG0380014543.01.T01 MTR_3g064420 25.312 561 332 16 34 537 19 549 3.55e-38 148
MsG0380014543.01.T01 MTR_5g008820 25.140 537 347 15 34 537 19 533 1.26e-37 146
MsG0380014543.01.T01 MTR_2g044180 26.376 527 328 17 58 540 47 557 1.65e-37 146
MsG0380014543.01.T01 MTR_8g074120 28.571 399 243 16 160 537 113 490 3.70e-35 139
MsG0380014543.01.T01 MTR_4g121600 25.590 551 348 18 34 540 25 557 4.38e-35 139
MsG0380014543.01.T01 MTR_8g074040 25.806 434 286 13 127 537 41 461 1.82e-34 136
MsG0380014543.01.T01 MTR_5g023730 25.140 537 353 16 34 538 21 540 2.61e-32 131
MsG0380014543.01.T01 MTR_2g044180 28.302 424 256 15 149 540 59 466 5.34e-32 129
MsG0380014543.01.T01 MTR_5g076220 25.000 548 343 17 34 536 19 543 6.36e-31 127
MsG0380014543.01.T01 MTR_5g076200 24.275 552 342 19 34 536 19 543 2.29e-28 119
MsG0380014543.01.T01 MTR_0161s0050 23.868 574 359 20 14 536 3 549 2.75e-27 116
MsG0380014543.01.T01 MTR_4g011790 25.676 370 241 12 192 536 233 593 2.59e-24 107
MsG0380014543.01.T01 MTR_4g011790 25.895 363 235 12 192 529 233 586 1.33e-23 105
MsG0380014543.01.T01 MTR_4g013210 24.665 373 245 11 192 536 76 440 2.57e-23 103
MsG0380014543.01.T01 MTR_1g104810 27.607 326 178 12 181 459 254 568 1.27e-22 102
MsG0380014543.01.T01 MTR_1g104810 27.607 326 178 12 181 459 187 501 1.78e-22 102
MsG0380014543.01.T01 MTR_4g011790 25.330 379 240 13 192 536 233 602 4.51e-22 100
MsG0380014543.01.T01 MTR_2g030240 23.897 544 340 17 58 547 29 552 1.04e-21 99.4
MsG0380014543.01.T01 MTR_4g013210 23.395 483 311 15 55 497 80 543 1.97e-21 98.6
MsG0380014543.01.T01 MTR_1054s0020 23.392 513 350 17 42 537 281 767 2.34e-20 95.5
MsG0380014543.01.T01 MTR_2g030240 24.685 397 241 12 192 547 79 458 2.72e-20 94.4
MsG0380014543.01.T01 MTR_4g013210 22.797 522 313 16 55 536 80 551 3.31e-20 94.7
MsG0380014543.01.T01 MTR_4g057755 46.667 75 40 0 398 472 46 120 3.59e-20 87.0
MsG0380014543.01.T01 MTR_4g013210 24.518 363 217 11 192 536 76 399 3.79e-20 93.2
MsG0380014543.01.T01 MTR_7g084850 22.261 566 371 18 43 552 185 737 2.69e-19 92.4
MsG0380014543.01.T01 MTR_5g009360 27.374 358 201 15 162 469 75 423 1.62e-18 89.4
MsG0380014543.01.T01 MTR_7g109830 26.087 506 266 23 48 469 66 547 2.24e-18 89.4
MsG0380014543.01.T01 MTR_5g009360 27.374 358 201 15 162 469 201 549 2.34e-18 89.0
MsG0380014543.01.T01 MTR_1g026350 28.571 126 88 1 15 140 26 149 5.88e-18 82.0
MsG0380014543.01.T01 MTR_5g009350 27.095 358 202 15 162 469 201 549 6.10e-18 87.8
MsG0380014543.01.T01 MTR_5g009350 27.095 358 202 15 162 469 201 549 8.71e-18 87.4
MsG0380014543.01.T01 MTR_5g009350 27.019 359 203 15 162 470 201 550 9.59e-18 87.0
MsG0380014543.01.T01 MTR_5g009350 26.816 358 203 15 162 469 201 549 9.86e-18 87.0
MsG0380014543.01.T01 MTR_8g083170 36.735 196 105 7 330 512 475 664 1.17e-17 87.0
MsG0380014543.01.T01 MTR_8g099420 26.050 357 199 15 162 465 202 546 1.92e-17 86.3
MsG0380014543.01.T01 MTR_3g084470 36.000 175 98 5 330 493 468 639 5.34e-17 85.1
MsG0380014543.01.T01 MTR_3g084450 32.673 202 114 7 330 518 264 456 1.15e-15 80.1
MsG0380014543.01.T01 MTR_3g084450 32.673 202 114 7 330 518 472 664 1.34e-15 80.5
MsG0380014543.01.T01 MTR_3g088890 48.333 60 31 0 444 503 10 69 2.90e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014543.01.T01 AT1G62940 72.744 532 142 2 10 539 7 537 0.0 786
MsG0380014543.01.T01 AT3G21240 37.873 536 320 6 12 538 19 550 4.73e-129 389
MsG0380014543.01.T01 AT1G65060 38.346 532 317 6 14 538 33 560 1.09e-125 380
MsG0380014543.01.T01 AT1G20480 38.278 546 314 7 11 542 29 565 1.24e-123 375
MsG0380014543.01.T01 AT4G05160 36.464 543 327 8 12 542 8 544 2.22e-122 371
MsG0380014543.01.T01 AT1G20510 35.564 523 326 7 16 532 17 534 3.19e-121 368
MsG0380014543.01.T01 AT3G21230 36.890 553 324 8 6 538 17 564 1.89e-117 359
MsG0380014543.01.T01 AT1G51680 36.920 539 320 8 15 538 24 557 1.14e-114 352
MsG0380014543.01.T01 AT3G21240 37.607 468 279 6 12 470 19 482 3.65e-107 330
MsG0380014543.01.T01 AT3G21240 37.607 468 279 6 12 470 19 482 3.65e-107 330
MsG0380014543.01.T01 AT5G63380 38.163 490 288 9 48 532 69 548 1.81e-105 328
MsG0380014543.01.T01 AT3G21230 36.295 529 306 9 6 514 17 534 1.18e-103 323
MsG0380014543.01.T01 AT1G20500 31.895 533 347 8 8 532 16 540 8.93e-102 318
MsG0380014543.01.T01 AT1G51680 36.508 504 300 8 15 503 24 522 2.11e-101 317
MsG0380014543.01.T01 AT4G19010 37.132 509 307 10 42 542 59 562 6.21e-101 316
MsG0380014543.01.T01 AT5G38120 32.717 541 336 9 16 542 24 550 1.36e-99 312
MsG0380014543.01.T01 AT1G20510 33.550 462 296 7 16 471 17 473 4.89e-97 303
MsG0380014543.01.T01 AT3G21230 36.289 485 284 8 6 470 17 496 5.03e-94 296
MsG0380014543.01.T01 AT1G51680 36.093 471 281 8 15 470 24 489 5.92e-92 291
MsG0380014543.01.T01 AT1G65060 35.056 445 278 6 14 451 33 473 4.32e-91 288
MsG0380014543.01.T01 AT5G38120 31.873 502 314 9 16 503 24 511 2.23e-86 277
MsG0380014543.01.T01 AT1G20510 31.818 440 289 7 16 449 17 451 8.88e-85 271
MsG0380014543.01.T01 AT5G38120 32.128 470 291 9 16 471 24 479 7.88e-79 256
MsG0380014543.01.T01 AT5G38120 32.128 470 291 9 16 471 24 479 7.88e-79 256
MsG0380014543.01.T01 AT3G21230 31.010 416 262 9 10 405 21 431 1.77e-52 185
MsG0380014543.01.T01 AT1G20490 27.635 427 279 10 8 418 16 428 3.11e-51 182
MsG0380014543.01.T01 AT1G20490 27.635 427 279 10 8 418 16 428 3.11e-51 182
MsG0380014543.01.T01 AT3G48990 28.215 521 344 12 35 541 9 513 3.08e-49 178
MsG0380014543.01.T01 AT1G21530 26.703 558 344 16 23 536 5 541 2.01e-41 157
MsG0380014543.01.T01 AT1G21530 26.703 558 346 16 23 536 5 543 4.18e-41 156
MsG0380014543.01.T01 AT5G16370 26.802 541 338 18 34 536 19 539 4.56e-40 153
MsG0380014543.01.T01 AT5G16340 27.322 549 338 19 34 541 19 547 8.22e-40 152
MsG0380014543.01.T01 AT1G21540 26.655 559 346 15 23 536 5 544 1.07e-39 152
MsG0380014543.01.T01 AT1G77240 25.698 537 359 15 29 536 14 539 3.57e-39 150
MsG0380014543.01.T01 AT1G75960 28.125 544 337 15 29 536 14 539 5.75e-39 150
MsG0380014543.01.T01 AT1G20560 27.491 542 334 17 34 537 21 541 7.92e-39 150
MsG0380014543.01.T01 AT2G17650 24.865 555 348 18 34 540 66 599 3.21e-36 143
MsG0380014543.01.T01 AT1G65890 26.151 543 350 15 34 536 19 550 7.40e-36 142
MsG0380014543.01.T01 AT1G65880 25.919 544 351 15 34 536 19 551 1.48e-35 140
MsG0380014543.01.T01 AT1G66120 24.581 537 359 14 34 536 19 543 2.81e-34 137
MsG0380014543.01.T01 AT1G20560 29.024 379 229 11 180 537 104 463 4.03e-32 129
MsG0380014543.01.T01 AT1G76290 26.667 540 344 19 34 542 19 537 5.35e-31 127
MsG0380014543.01.T01 AT1G68270 24.119 539 326 17 34 531 19 515 1.82e-30 125
MsG0380014543.01.T01 AT3G16910 25.560 536 322 19 58 540 49 560 2.84e-29 122
MsG0380014543.01.T01 AT5G27600 28.779 344 185 15 161 457 239 569 1.14e-25 112
MsG0380014543.01.T01 AT3G16170 21.730 497 350 10 70 538 119 604 4.27e-25 110
MsG0380014543.01.T01 AT3G05970 29.630 324 170 11 181 457 257 569 1.74e-23 105
MsG0380014543.01.T01 AT1G30520 22.744 554 349 13 47 543 23 554 1.17e-22 102
MsG0380014543.01.T01 AT1G30520 22.744 554 349 13 47 543 23 554 1.17e-22 102
MsG0380014543.01.T01 AT1G64400 25.610 492 284 20 49 469 70 550 2.79e-21 98.2
MsG0380014543.01.T01 AT4G23850 25.455 495 281 21 49 469 70 550 1.49e-19 92.8
MsG0380014543.01.T01 AT1G49430 23.780 492 287 21 38 455 60 537 5.82e-17 84.7
MsG0380014543.01.T01 AT2G47240 24.593 492 269 20 58 469 78 547 7.32e-17 84.3
MsG0380014543.01.T01 AT2G47240 24.593 492 269 20 58 469 78 547 7.32e-17 84.3
MsG0380014543.01.T01 AT2G47240 24.593 492 269 20 58 469 78 547 7.32e-17 84.3
MsG0380014543.01.T01 AT2G47240 24.593 492 269 20 58 469 19 488 1.03e-16 84.0
MsG0380014543.01.T01 AT1G30520 22.616 451 284 10 47 454 23 451 3.96e-15 78.6
MsG0380014543.01.T01 AT1G30520 22.616 451 284 10 47 454 23 451 3.96e-15 78.6
MsG0380014543.01.T01 AT3G23790 32.164 171 92 5 330 479 473 640 2.06e-13 73.6
MsG0380014543.01.T01 AT4G14070 31.481 162 97 4 330 480 489 647 4.07e-13 72.8
MsG0380014543.01.T01 AT4G14070 26.141 241 150 7 27 241 95 333 3.96e-12 69.7

Find 113 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTTCATCCTTCCGAATT+TGG 0.115535 3:+56293838 MsG0380014543.01.T01:CDS
CACCATATAGTTCAGCATTT+TGG 0.132681 3:-56292511 None:intergenic
GGGAGGGATCTTCCTGTTTC+AGG 0.163210 3:-56293878 None:intergenic
ATGGCATACTCTACAATATT+TGG 0.177450 3:-56292668 None:intergenic
GCTATTTGTGACAATTAATT+TGG 0.178651 3:-56292789 None:intergenic
GAATATGTTGTGCTACTATT+TGG 0.217921 3:+56293221 MsG0380014543.01.T01:CDS
ATTGTTCCACCTATTATTCT+TGG 0.237238 3:+56293331 MsG0380014543.01.T01:CDS
CATGATTCCCAAAGCAATTA+TGG 0.243681 3:-56292687 None:intergenic
ATTGGAAAAGTCACTACATT+AGG 0.245143 3:+56293163 MsG0380014543.01.T01:CDS
GCATGGCACAAAGGTCATTT+TGG 0.254488 3:-56293036 None:intergenic
TTAACCAATCCAAGAATAAT+AGG 0.258003 3:-56293340 None:intergenic
GAAGATGGTGGAAAAGATTA+AGG 0.261374 3:+56295006 MsG0380014543.01.T01:CDS
AATCTTTGTTCCACACTCTT+TGG 0.292337 3:+56293124 MsG0380014543.01.T01:CDS
GCTTTGGGAATCATGGATTC+TGG 0.330857 3:+56292695 MsG0380014543.01.T01:CDS
ATTTCCCCTGCCTCTTCATC+TGG 0.345841 3:-56294815 None:intergenic
TCAAAGGAAGTAAGTAATTC+AGG 0.346829 3:-56293439 None:intergenic
GGTCTCTTGGTTTGAGAAAA+GGG 0.362079 3:+56292624 MsG0380014543.01.T01:CDS
AGAGTATGCCATAATTGCTT+TGG 0.362833 3:+56292679 MsG0380014543.01.T01:CDS
CATAATTGCTTTGGGAATCA+TGG 0.365698 3:+56292688 MsG0380014543.01.T01:CDS
AGGTCTCTTGGTTTGAGAAA+AGG 0.379071 3:+56292623 MsG0380014543.01.T01:CDS
CTCCAAAATGCTGAACTATA+TGG 0.388619 3:+56292509 MsG0380014543.01.T01:CDS
ATAAACTTGACTTCCAAATT+CGG 0.392960 3:-56293851 None:intergenic
TAGCCAATATTCTCCGGTTC+CGG 0.393483 3:+56292454 MsG0380014543.01.T01:CDS
GGTTGCTCCTGCAGAGTTAG+AGG 0.394433 3:+56294525 MsG0380014543.01.T01:intron
TCCACCTATTATTCTTGGAT+TGG 0.398159 3:+56293336 MsG0380014543.01.T01:CDS
GGTGTAACACAAGAAATGAT+TGG 0.398343 3:+56293145 MsG0380014543.01.T01:CDS
GCTATACCAAAATCACCTTC+TGG 0.399912 3:+56294956 MsG0380014543.01.T01:CDS
AAGTTTATTGATCCTGAAAC+AGG 0.400350 3:+56293866 MsG0380014543.01.T01:CDS
AGTTCCCCTGGTGTGTTCCT+AGG 0.406644 3:-56293899 None:intergenic
GAGTATGCCATAATTGCTTT+GGG 0.419259 3:+56292680 MsG0380014543.01.T01:CDS
CTCAAAACAACACTTGCAGC+TGG 0.420863 3:-56294839 None:intergenic
TTGGAAAAGTCACTACATTA+GGG 0.421139 3:+56293164 MsG0380014543.01.T01:CDS
CCTGTTGTGCCTGATGAAAA+TGG 0.423310 3:-56293058 None:intergenic
ACCTGAAAATGTCACATTGC+CGG 0.423869 3:+56292478 MsG0380014543.01.T01:CDS
AGAATAATAGGTGGAACAAT+AGG 0.427941 3:-56293328 None:intergenic
TGGAACAAAGATTTGCTACT+AGG 0.430048 3:-56293114 None:intergenic
TGGTGATAAGGTTGCATTTG+TGG 0.435222 3:+56292529 MsG0380014543.01.T01:CDS
GTACCGGAACCGGAGAATAT+TGG 0.435317 3:-56292457 None:intergenic
TCAAAGGCATTAAGGTCTCT+TGG 0.441985 3:+56292611 MsG0380014543.01.T01:CDS
AGATCAAATTGATCAACAAT+AGG 0.448219 3:-56293367 None:intergenic
TTTCACATTTATGGCATCAC+TGG 0.449930 3:+56293199 MsG0380014543.01.T01:CDS
AGTGAGAGTGGTTCACTTTG+TGG 0.451776 3:+56294931 MsG0380014543.01.T01:CDS
TGGTGCGGCAGCAGTCATAA+TGG 0.453972 3:-56293410 None:intergenic
AACTTCTTGAAGCAGGAGAC+AGG 0.459345 3:+56292981 MsG0380014543.01.T01:CDS
GTGGATGCTGAGAGTGGAAA+AGG 0.460013 3:+56292548 MsG0380014543.01.T01:CDS
GTGCTACTATTTGGAACAAA+GGG 0.465645 3:+56293230 MsG0380014543.01.T01:CDS
GTTCCCCTGGTGTGTTCCTA+GGG 0.470126 3:-56293898 None:intergenic
ATTTCCGACGTATGTGAAGC+TGG 0.470134 3:-56292740 None:intergenic
TTTCTTGTAATGAGCAGCAT+TGG 0.471695 3:-56294909 None:intergenic
TCCTTTGAACATAAGTTCCC+TGG 0.472567 3:+56293454 MsG0380014543.01.T01:CDS
CTTCTCACACAAAGTTCCCC+TGG 0.483470 3:-56293911 None:intergenic
TGGAACAAACTTCTTGAAGC+AGG 0.487051 3:+56292974 MsG0380014543.01.T01:CDS
TTGTTGAAGATGCTATGAAT+TGG 0.495143 3:+56292954 MsG0380014543.01.T01:CDS
CTTCAACAAGTTCATCTCCT+AGG 0.495549 3:-56292940 None:intergenic
TGCTGAACTATATGGTGATA+AGG 0.502771 3:+56292517 MsG0380014543.01.T01:CDS
GCTCAGACTATTGACAAGAA+TGG 0.504279 3:+56294150 MsG0380014543.01.T01:CDS
AAATAGCTCAAGCCATGAAA+AGG 0.506415 3:+56292805 MsG0380014543.01.T01:CDS
AACTTATAGTGAGGTTGTGA+GGG 0.507026 3:+56292574 MsG0380014543.01.T01:CDS
AAAATAGCCTCTAACTCTGC+AGG 0.509463 3:-56294532 None:intergenic
CCCTGGTGTGTTCCTAGGGA+GGG 0.511302 3:-56293894 None:intergenic
GGGCTACCTGTGATAGTCCT+AGG 0.522982 3:+56292923 MsG0380014543.01.T01:CDS
CAAAGGGAAAGTAGTGGTGA+TGG 0.526343 3:+56293246 MsG0380014543.01.T01:CDS
TGGATGCTGAGAGTGGAAAA+GGG 0.526905 3:+56292549 MsG0380014543.01.T01:CDS
AGATTACCAGATGAAGAGGC+AGG 0.529521 3:+56294809 MsG0380014543.01.T01:intron
CCCTGGTGTTCTTGTCCAAG+AGG 0.537326 3:+56293471 MsG0380014543.01.T01:CDS
GTTCAGATTACCAGATGAAG+AGG 0.538232 3:+56294805 MsG0380014543.01.T01:intron
ACCAGGGAACTTATGTTCAA+AGG 0.540093 3:-56293455 None:intergenic
CCCCTGGTGTGTTCCTAGGG+AGG 0.540180 3:-56293895 None:intergenic
CTTGAAGCAGGAGACAGGGC+AGG 0.542462 3:+56292986 MsG0380014543.01.T01:CDS
TGGCTTCACACTGGTGACAT+AGG 0.543428 3:+56294174 MsG0380014543.01.T01:CDS
AAGGCTTGTCAAAGAGAAGA+TGG 0.550369 3:+56294991 MsG0380014543.01.T01:CDS
TAACTTATAGTGAGGTTGTG+AGG 0.556235 3:+56292573 MsG0380014543.01.T01:CDS
TCATCTCCTAGGACTATCAC+AGG 0.558388 3:-56292929 None:intergenic
AAAGGGAAAGTAGTGGTGAT+GGG 0.563703 3:+56293247 MsG0380014543.01.T01:CDS
GGCACAACAGGAATGTCAAA+GGG 0.563766 3:+56293070 MsG0380014543.01.T01:CDS
TCAAAACAACACTTGCAGCT+GGG 0.565486 3:-56294838 None:intergenic
TGTGCTACTATTTGGAACAA+AGG 0.568921 3:+56293229 MsG0380014543.01.T01:CDS
ACCTCTTGGACAAGAACACC+AGG 0.572949 3:-56293472 None:intergenic
AGGCACAACAGGAATGTCAA+AGG 0.574039 3:+56293069 MsG0380014543.01.T01:CDS
TCCCTCCCTAGGAACACACC+AGG 0.574224 3:+56293893 MsG0380014543.01.T01:CDS
AAGGAGTTGATTAAATACAA+AGG 0.576483 3:+56294240 MsG0380014543.01.T01:CDS
GGCAGGGAATGATTCAATGA+AGG 0.578185 3:+56293003 MsG0380014543.01.T01:CDS
GATTACCTTGCATTACACAT+TGG 0.583044 3:-56293934 None:intergenic
TTGTGTTACACCAAAGAGTG+TGG 0.585398 3:-56293134 None:intergenic
ACTTGACTTCCAAATTCGGA+AGG 0.585552 3:-56293847 None:intergenic
CCCTCCCTAGGAACACACCA+GGG 0.593649 3:+56293894 MsG0380014543.01.T01:CDS
ATGAAAATGGCATGGCACAA+AGG 0.593972 3:-56293045 None:intergenic
ATTACCAGATGAAGAGGCAG+GGG 0.599737 3:+56294811 MsG0380014543.01.T01:CDS
ACTAGGTTATTATAAACAAG+TGG 0.600754 3:+56294119 MsG0380014543.01.T01:intron
AGACTATTGACAAGAATGGA+TGG 0.601286 3:+56294154 MsG0380014543.01.T01:CDS
AAACAGGAAGATCCCTCCCT+AGG 0.605098 3:+56293882 MsG0380014543.01.T01:CDS
TTGAAGCAGGAGACAGGGCA+GGG 0.607241 3:+56292987 MsG0380014543.01.T01:CDS
GATTACCAGATGAAGAGGCA+GGG 0.608775 3:+56294810 MsG0380014543.01.T01:intron
GTAAGTAATTCAGGTGCAAG+TGG 0.616501 3:-56293430 None:intergenic
CTTCTGGTAAAATAATGAGA+AGG 0.618252 3:+56294972 MsG0380014543.01.T01:CDS
CGCGGTTACTTACGGTACAA+CGG 0.622758 3:-56294584 None:intergenic
AAAAGGGGTAACTTATAGTG+AGG 0.624507 3:+56292565 MsG0380014543.01.T01:CDS
AACGGCTGCATCTTCAACTG+AGG 0.624792 3:-56294566 None:intergenic
ACTTCTTGAAGCAGGAGACA+GGG 0.624809 3:+56292982 MsG0380014543.01.T01:CDS
GCATTTGTGGATGCTGAGAG+TGG 0.629816 3:+56292542 MsG0380014543.01.T01:CDS
ACCAATCCAAGAATAATAGG+TGG 0.632007 3:-56293337 None:intergenic
TTGGAACAAAGGGAAAGTAG+TGG 0.632777 3:+56293240 MsG0380014543.01.T01:CDS
AGGTGCAAAAGAGAGTGAAG+AGG 0.641402 3:+56294865 MsG0380014543.01.T01:CDS
TAATTCAGGTGCAAGTGGTG+CGG 0.644032 3:-56293425 None:intergenic
GGATGCTGAGAGTGGAAAAG+GGG 0.654547 3:+56292550 MsG0380014543.01.T01:CDS
TCATTACAAGAAAGTGAGAG+TGG 0.654711 3:+56294919 MsG0380014543.01.T01:CDS
TAATCCAGCTTCACATACGT+CGG 0.679378 3:+56292736 MsG0380014543.01.T01:CDS
AAGAATGGATGGCTTCACAC+TGG 0.689570 3:+56294165 MsG0380014543.01.T01:CDS
CCTCCCTAGGAACACACCAG+GGG 0.696027 3:+56293895 MsG0380014543.01.T01:CDS
AGAAGCCAATGTGTAATGCA+AGG 0.701599 3:+56293929 MsG0380014543.01.T01:CDS
GCTTGTCAAAGAGAAGATGG+TGG 0.703710 3:+56294994 MsG0380014543.01.T01:CDS
TGTGCCTGATGAAAATGGCA+TGG 0.715816 3:-56293053 None:intergenic
CCTCTTGGACAAGAACACCA+GGG 0.762377 3:-56293471 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTAAAGACTTTTTTA+GGG + Chr3:56293526-56293545 MsG0380014543.01.T01:intron 10.0%
!! ATTACCAATTTATCAAATAA+AGG + Chr3:56294392-56294411 MsG0380014543.01.T01:intron 15.0%
!!! AAAATTTGTTAGATTTTGTT+AGG - Chr3:56295042-56295061 None:intergenic 15.0%
!!! AAATTTGTTAGATTTTGTTA+GGG - Chr3:56295041-56295060 None:intergenic 15.0%
!!! GTTTAATTAAAGACTTTTTT+AGG + Chr3:56293525-56293544 MsG0380014543.01.T01:intron 15.0%
!!! TTAACCTTTATTTGATAAAT+TGG - Chr3:56294399-56294418 None:intergenic 15.0%
!! TAAACTAACAATACTATAGA+AGG - Chr3:56293510-56293529 None:intergenic 20.0%
!! TTATAGATGCATATTAATGT+GGG - Chr3:56294440-56294459 None:intergenic 20.0%
!! TTATCAAATAAAGGTTAACT+TGG + Chr3:56294401-56294420 MsG0380014543.01.T01:intron 20.0%
!!! AAACTCTTTTTGATTTTACT+AGG + Chr3:56294102-56294121 MsG0380014543.01.T01:intron 20.0%
!!! AATAACTCTTTTTAATACAC+CGG + Chr3:56294620-56294639 MsG0380014543.01.T01:intron 20.0%
!!! ATGATTCATCATAATTTTGA+AGG - Chr3:56292836-56292855 None:intergenic 20.0%
!!! GTTTATTCTTTATGTCTTTT+TGG + Chr3:56292856-56292875 MsG0380014543.01.T01:intron 20.0%
!!! TCTAAAATTACACATATGAT+TGG - Chr3:56294681-56294700 None:intergenic 20.0%
!!! TTCTACAAAATTTTCTATGT+AGG - Chr3:56292414-56292433 None:intergenic 20.0%
!!! TTTTATTGTTGATCGTATTA+AGG + Chr3:56294221-56294240 MsG0380014543.01.T01:CDS 20.0%
!!! TTTTTTATAGTATGTGTTTC+TGG + Chr3:56293600-56293619 MsG0380014543.01.T01:intron 20.0%
!!! TTTTTTTAGACAAATGTTAG+TGG + Chr3:56293984-56294003 MsG0380014543.01.T01:intron 20.0%
! AATATGCATCTATAAGTCTA+AGG + Chr3:56294445-56294464 MsG0380014543.01.T01:intron 25.0%
! ACATATGCACAAAAATTATC+TGG + Chr3:56293794-56293813 MsG0380014543.01.T01:CDS 25.0%
! ACTAGGTTATTATAAACAAG+TGG + Chr3:56294119-56294138 MsG0380014543.01.T01:intron 25.0%
! AGATCAAATTGATCAACAAT+AGG - Chr3:56293370-56293389 None:intergenic 25.0%
! ATAAACTTGACTTCCAAATT+CGG - Chr3:56293854-56293873 None:intergenic 25.0%
! ATGCCATAAATGTGAAAAAA+GGG - Chr3:56293196-56293215 None:intergenic 25.0%
! ATGGAACAAAACATTATTTG+TGG + Chr3:56294302-56294321 MsG0380014543.01.T01:intron 25.0%
! ATTTGATACAATGTTGATAC+AGG + Chr3:56292889-56292908 MsG0380014543.01.T01:intron 25.0%
! CTTATAGATGCATATTAATG+TGG - Chr3:56294441-56294460 None:intergenic 25.0%
! GCTATTTGTGACAATTAATT+TGG - Chr3:56292792-56292811 None:intergenic 25.0%
! GTTACATGTTTATTCTTACA+TGG + Chr3:56294283-56294302 MsG0380014543.01.T01:intron 25.0%
! TTAACCAATCCAAGAATAAT+AGG - Chr3:56293343-56293362 None:intergenic 25.0%
!! AAGGAGTTGATTAAATACAA+AGG + Chr3:56294240-56294259 MsG0380014543.01.T01:CDS 25.0%
!! AAGTTCTGTTTTGTCAAATT+TGG + Chr3:56294351-56294370 MsG0380014543.01.T01:intron 25.0%
!! CACTTTAGAAACACATAAAA+GGG - Chr3:56293719-56293738 None:intergenic 25.0%
!! GGATATACATAGATTTTCAA+AGG + Chr3:56292595-56292614 MsG0380014543.01.T01:CDS 25.0%
!! TGGAAGTACACATAAAAATT+CGG + Chr3:56293814-56293833 MsG0380014543.01.T01:CDS 25.0%
!!! AACTAATTTTAGCCTATACT+TGG - Chr3:56294481-56294500 None:intergenic 25.0%
!!! ACTAATTTTAGCCTATACTT+GGG - Chr3:56294480-56294499 None:intergenic 25.0%
!!! ATAGATTTTCAAAGGCATTA+AGG + Chr3:56292603-56292622 MsG0380014543.01.T01:CDS 25.0%
!!! ATGTTAGTGGTTAATTTGTT+AGG + Chr3:56293997-56294016 MsG0380014543.01.T01:intron 25.0%
!!! ATTCCCTTTTTTCACATTTA+TGG + Chr3:56293190-56293209 MsG0380014543.01.T01:CDS 25.0%
!!! GTTTTTTCTTTTTTGAATGC+AGG + Chr3:56294504-56294523 MsG0380014543.01.T01:intron 25.0%
AAGTTTATTGATCCTGAAAC+AGG + Chr3:56293866-56293885 MsG0380014543.01.T01:CDS 30.0%
AGAATAATAGGTGGAACAAT+AGG - Chr3:56293331-56293350 None:intergenic 30.0%
AGTACACATAAAAATTCGGT+CGG + Chr3:56293818-56293837 MsG0380014543.01.T01:CDS 30.0%
ATGGCATACTCTACAATATT+TGG - Chr3:56292671-56292690 None:intergenic 30.0%
ATTGGAAAAGTCACTACATT+AGG + Chr3:56293163-56293182 MsG0380014543.01.T01:CDS 30.0%
ATTGTTCCACCTATTATTCT+TGG + Chr3:56293331-56293350 MsG0380014543.01.T01:CDS 30.0%
CTTCTGGTAAAATAATGAGA+AGG + Chr3:56294972-56294991 MsG0380014543.01.T01:CDS 30.0%
GATGCCATAAATGTGAAAAA+AGG - Chr3:56293197-56293216 None:intergenic 30.0%
TCAAAGGAAGTAAGTAATTC+AGG - Chr3:56293442-56293461 None:intergenic 30.0%
TGATACAGGTGAAAAATCTA+GGG + Chr3:56292903-56292922 MsG0380014543.01.T01:intron 30.0%
TGTAACATCAAGAACTTACT+TGG - Chr3:56294269-56294288 None:intergenic 30.0%
TTGATACAGGTGAAAAATCT+AGG + Chr3:56292902-56292921 MsG0380014543.01.T01:intron 30.0%
TTGGAAAAGTCACTACATTA+GGG + Chr3:56293164-56293183 MsG0380014543.01.T01:CDS 30.0%
TTGTTGAAGATGCTATGAAT+TGG + Chr3:56292954-56292973 MsG0380014543.01.T01:CDS 30.0%
! ATTTTACCAGAAGGTGATTT+TGG - Chr3:56294965-56294984 None:intergenic 30.0%
! ATTTTATCATAAGTCTCCGA+AGG - Chr3:56294063-56294082 None:intergenic 30.0%
! GAATATGTTGTGCTACTATT+TGG + Chr3:56293221-56293240 MsG0380014543.01.T01:CDS 30.0%
! GCACTTTAGAAACACATAAA+AGG - Chr3:56293720-56293739 None:intergenic 30.0%
!! CTTCTCATTATTTTACCAGA+AGG - Chr3:56294974-56294993 None:intergenic 30.0%
!! TTATAGTATGTGTTTCTGGA+GGG + Chr3:56293604-56293623 MsG0380014543.01.T01:intron 30.0%
!! TTTATAGTATGTGTTTCTGG+AGG + Chr3:56293603-56293622 MsG0380014543.01.T01:intron 30.0%
AAAAGGGGTAACTTATAGTG+AGG + Chr3:56292565-56292584 MsG0380014543.01.T01:CDS 35.0%
AAATAGCTCAAGCCATGAAA+AGG + Chr3:56292805-56292824 MsG0380014543.01.T01:CDS 35.0%
AACTTATAGTGAGGTTGTGA+GGG + Chr3:56292574-56292593 MsG0380014543.01.T01:CDS 35.0%
AATCTTTGTTCCACACTCTT+TGG + Chr3:56293124-56293143 MsG0380014543.01.T01:CDS 35.0%
ACCAATCCAAGAATAATAGG+TGG - Chr3:56293340-56293359 None:intergenic 35.0%
AGAAACACATAAAAGGGCAA+AGG - Chr3:56293713-56293732 None:intergenic 35.0%
AGACTATTGACAAGAATGGA+TGG + Chr3:56294154-56294173 MsG0380014543.01.T01:CDS 35.0%
AGAGTATGCCATAATTGCTT+TGG + Chr3:56292679-56292698 MsG0380014543.01.T01:CDS 35.0%
CATGATTCCCAAAGCAATTA+TGG - Chr3:56292690-56292709 None:intergenic 35.0%
CTCCAAAATGCTGAACTATA+TGG + Chr3:56292509-56292528 MsG0380014543.01.T01:CDS 35.0%
GAAACACATAAAAGGGCAAA+GGG - Chr3:56293712-56293731 None:intergenic 35.0%
GAGTATGCCATAATTGCTTT+GGG + Chr3:56292680-56292699 MsG0380014543.01.T01:CDS 35.0%
GATTACCTTGCATTACACAT+TGG - Chr3:56293937-56293956 None:intergenic 35.0%
GGTGTAACACAAGAAATGAT+TGG + Chr3:56293145-56293164 MsG0380014543.01.T01:CDS 35.0%
TAACTTATAGTGAGGTTGTG+AGG + Chr3:56292573-56292592 MsG0380014543.01.T01:CDS 35.0%
TAATACACCGGTAGTGTAAA+AGG + Chr3:56294632-56294651 MsG0380014543.01.T01:intron 35.0%
TCATTACAAGAAAGTGAGAG+TGG + Chr3:56294919-56294938 MsG0380014543.01.T01:CDS 35.0%
TCCACCTATTATTCTTGGAT+TGG + Chr3:56293336-56293355 MsG0380014543.01.T01:CDS 35.0%
TGCTGAACTATATGGTGATA+AGG + Chr3:56292517-56292536 MsG0380014543.01.T01:CDS 35.0%
TTATTCTTGCATGATTGTCG+CGG - Chr3:56294605-56294624 None:intergenic 35.0%
TTTCACATTTATGGCATCAC+TGG + Chr3:56293199-56293218 MsG0380014543.01.T01:CDS 35.0%
TTTCTTGTAATGAGCAGCAT+TGG - Chr3:56294912-56294931 None:intergenic 35.0%
! CACCATATAGTTCAGCATTT+TGG - Chr3:56292514-56292533 None:intergenic 35.0%
! GTGCTACTATTTGGAACAAA+GGG + Chr3:56293230-56293249 MsG0380014543.01.T01:CDS 35.0%
! TGTAGAACCTTTTACACTAC+CGG - Chr3:56294642-56294661 None:intergenic 35.0%
! TGTGCTACTATTTGGAACAA+AGG + Chr3:56293229-56293248 MsG0380014543.01.T01:CDS 35.0%
! TTGAAGGAGTTACCTTTTCA+TGG - Chr3:56292820-56292839 None:intergenic 35.0%
! TTTTCGTAGCCAATATTCTC+CGG + Chr3:56292448-56292467 MsG0380014543.01.T01:CDS 35.0%
! TTTTTCCTTTTGCAGGCATA+TGG + Chr3:56293743-56293762 MsG0380014543.01.T01:intron 35.0%
!! CAAAGGTCATTTTGGTGAAT+TGG - Chr3:56293031-56293050 None:intergenic 35.0%
!! CATAATTGCTTTGGGAATCA+TGG + Chr3:56292688-56292707 MsG0380014543.01.T01:CDS 35.0%
!! GAAGATGGTGGAAAAGATTA+AGG + Chr3:56295006-56295025 MsG0380014543.01.T01:CDS 35.0%
!! TATAGTATGTGTTTCTGGAG+GGG + Chr3:56293605-56293624 MsG0380014543.01.T01:intron 35.0%
!! TGGAACAAAGATTTGCTACT+AGG - Chr3:56293117-56293136 None:intergenic 35.0%
!!! AATGTGACATTTTCAGGTAC+CGG - Chr3:56292476-56292495 None:intergenic 35.0%
AAAATAGCCTCTAACTCTGC+AGG - Chr3:56294535-56294554 None:intergenic 40.0%
AAAGGGAAAGTAGTGGTGAT+GGG + Chr3:56293247-56293266 MsG0380014543.01.T01:CDS 40.0%
AAGGCTTGTCAAAGAGAAGA+TGG + Chr3:56294991-56295010 MsG0380014543.01.T01:CDS 40.0%
ACCAGGGAACTTATGTTCAA+AGG - Chr3:56293458-56293477 None:intergenic 40.0%
ACCTGAAAATGTCACATTGC+CGG + Chr3:56292478-56292497 MsG0380014543.01.T01:CDS 40.0%
ACTTGACTTCCAAATTCGGA+AGG - Chr3:56293850-56293869 None:intergenic 40.0%
AGAAGCCAATGTGTAATGCA+AGG + Chr3:56293929-56293948 MsG0380014543.01.T01:CDS 40.0%
ATGAAAATGGCATGGCACAA+AGG - Chr3:56293048-56293067 None:intergenic 40.0%
ATGATTGTCGCGGTTACTTA+CGG - Chr3:56294595-56294614 None:intergenic 40.0%
ATTATTACCGGGAATACCAC+TGG + Chr3:56294031-56294050 MsG0380014543.01.T01:intron 40.0%
CTTCAACAAGTTCATCTCCT+AGG - Chr3:56292943-56292962 None:intergenic 40.0%
GCTATACCAAAATCACCTTC+TGG + Chr3:56294956-56294975 MsG0380014543.01.T01:CDS 40.0%
GCTCAGACTATTGACAAGAA+TGG + Chr3:56294150-56294169 MsG0380014543.01.T01:CDS 40.0%
GGATGAAAGTGATAACCTCT+TGG - Chr3:56293489-56293508 None:intergenic 40.0%
GTAAGTAATTCAGGTGCAAG+TGG - Chr3:56293433-56293452 None:intergenic 40.0%
GTTCAGATTACCAGATGAAG+AGG + Chr3:56294805-56294824 MsG0380014543.01.T01:intron 40.0%
TAATCCAGCTTCACATACGT+CGG + Chr3:56292736-56292755 MsG0380014543.01.T01:CDS 40.0%
TCAAAACAACACTTGCAGCT+GGG - Chr3:56294841-56294860 None:intergenic 40.0%
TCCTTTGAACATAAGTTCCC+TGG + Chr3:56293454-56293473 MsG0380014543.01.T01:CDS 40.0%
TGGAACAAACTTCTTGAAGC+AGG + Chr3:56292974-56292993 MsG0380014543.01.T01:CDS 40.0%
TGGTGATAAGGTTGCATTTG+TGG + Chr3:56292529-56292548 MsG0380014543.01.T01:CDS 40.0%
TTAGTCCATATGCCTGCAAA+AGG - Chr3:56293751-56293770 None:intergenic 40.0%
TTGGAACAAAGGGAAAGTAG+TGG + Chr3:56293240-56293259 MsG0380014543.01.T01:CDS 40.0%
TTGTGTTACACCAAAGAGTG+TGG - Chr3:56293137-56293156 None:intergenic 40.0%
! AGGTCTCTTGGTTTGAGAAA+AGG + Chr3:56292623-56292642 MsG0380014543.01.T01:CDS 40.0%
! ATATGATTGGTCGTGATTGG+TGG - Chr3:56294668-56294687 None:intergenic 40.0%
! CACATATGATTGGTCGTGAT+TGG - Chr3:56294671-56294690 None:intergenic 40.0%
! GATTCTGGATGTGTGTTTTC+AGG + Chr3:56292710-56292729 MsG0380014543.01.T01:CDS 40.0%
! GGTCTCTTGGTTTGAGAAAA+GGG + Chr3:56292624-56292643 MsG0380014543.01.T01:CDS 40.0%
!! TCAAAGGCATTAAGGTCTCT+TGG + Chr3:56292611-56292630 MsG0380014543.01.T01:CDS 40.0%
!!! GCAAGTGTTGTTTTGAGCAA+AGG + Chr3:56294845-56294864 MsG0380014543.01.T01:CDS 40.0%
!!! GCATTTTGGAGCACAAATTC+CGG - Chr3:56292500-56292519 None:intergenic 40.0%
!!! GTGCTAGTTTTTCCTTTTGC+AGG + Chr3:56293736-56293755 MsG0380014543.01.T01:intron 40.0%
AACTTCTTGAAGCAGGAGAC+AGG + Chr3:56292981-56293000 MsG0380014543.01.T01:CDS 45.0%
AAGAATGGATGGCTTCACAC+TGG + Chr3:56294165-56294184 MsG0380014543.01.T01:CDS 45.0%
ACTTCTTGAAGCAGGAGACA+GGG + Chr3:56292982-56293001 MsG0380014543.01.T01:CDS 45.0%
AGATTACCAGATGAAGAGGC+AGG + Chr3:56294809-56294828 MsG0380014543.01.T01:intron 45.0%
AGGCACAACAGGAATGTCAA+AGG + Chr3:56293069-56293088 MsG0380014543.01.T01:CDS 45.0%
AGGTGCAAAAGAGAGTGAAG+AGG + Chr3:56294865-56294884 MsG0380014543.01.T01:CDS 45.0%
AGTGAGAGTGGTTCACTTTG+TGG + Chr3:56294931-56294950 MsG0380014543.01.T01:CDS 45.0%
ATACCACTGGACTACACCTT+CGG + Chr3:56294044-56294063 MsG0380014543.01.T01:intron 45.0%
ATTACCAGATGAAGAGGCAG+GGG + Chr3:56294811-56294830 MsG0380014543.01.T01:CDS 45.0%
ATTTCCGACGTATGTGAAGC+TGG - Chr3:56292743-56292762 None:intergenic 45.0%
CAAAGGGAAAGTAGTGGTGA+TGG + Chr3:56293246-56293265 MsG0380014543.01.T01:CDS 45.0%
CCGAGGCGAAAATTATTACC+GGG + Chr3:56294020-56294039 MsG0380014543.01.T01:intron 45.0%
CCTGTTGTGCCTGATGAAAA+TGG - Chr3:56293061-56293080 None:intergenic 45.0%
CGGTTTCATCCTTCCGAATT+TGG + Chr3:56293838-56293857 MsG0380014543.01.T01:CDS 45.0%
CTCAAAACAACACTTGCAGC+TGG - Chr3:56294842-56294861 None:intergenic 45.0%
GATTACCAGATGAAGAGGCA+GGG + Chr3:56294810-56294829 MsG0380014543.01.T01:intron 45.0%
GCCGAGGCGAAAATTATTAC+CGG + Chr3:56294019-56294038 MsG0380014543.01.T01:intron 45.0%
GCTTGTCAAAGAGAAGATGG+TGG + Chr3:56294994-56295013 MsG0380014543.01.T01:CDS 45.0%
GGAATCTTCTGCCCAAGTAT+AGG + Chr3:56294466-56294485 MsG0380014543.01.T01:intron 45.0%
GGCACAACAGGAATGTCAAA+GGG + Chr3:56293070-56293089 MsG0380014543.01.T01:CDS 45.0%
GGCAGGGAATGATTCAATGA+AGG + Chr3:56293003-56293022 MsG0380014543.01.T01:CDS 45.0%
TAATTCAGGTGCAAGTGGTG+CGG - Chr3:56293428-56293447 None:intergenic 45.0%
TAGCCAATATTCTCCGGTTC+CGG + Chr3:56292454-56292473 MsG0380014543.01.T01:CDS 45.0%
TCATCTCCTAGGACTATCAC+AGG - Chr3:56292932-56292951 None:intergenic 45.0%
TGGATGCTGAGAGTGGAAAA+GGG + Chr3:56292549-56292568 MsG0380014543.01.T01:CDS 45.0%
TGTGCCTGATGAAAATGGCA+TGG - Chr3:56293056-56293075 None:intergenic 45.0%
TTGCTGCCATGTGACTGAAA+GGG + Chr3:56293651-56293670 MsG0380014543.01.T01:intron 45.0%
! CCATTTTCATCAGGCACAAC+AGG + Chr3:56293058-56293077 MsG0380014543.01.T01:CDS 45.0%
! CCCGGTAATAATTTTCGCCT+CGG - Chr3:56294023-56294042 None:intergenic 45.0%
! CTGAAAGGGCACAGGTTATA+CGG + Chr3:56293665-56293684 MsG0380014543.01.T01:intron 45.0%
! GCATGGCACAAAGGTCATTT+TGG - Chr3:56293039-56293058 None:intergenic 45.0%
! TCCGGCAATGTGACATTTTC+AGG - Chr3:56292482-56292501 None:intergenic 45.0%
! TGAAAGGGCACAGGTTATAC+GGG + Chr3:56293666-56293685 MsG0380014543.01.T01:intron 45.0%
!! GCTTTGGGAATCATGGATTC+TGG + Chr3:56292695-56292714 MsG0380014543.01.T01:CDS 45.0%
!! GTGGTTAATTTGTTAGGCCG+AGG + Chr3:56294003-56294022 MsG0380014543.01.T01:intron 45.0%
!!! ACATTTTCAGGTACCGGAAC+CGG - Chr3:56292470-56292489 None:intergenic 45.0%
!!! TGTGCCATGCCATTTTCATC+AGG + Chr3:56293049-56293068 MsG0380014543.01.T01:CDS 45.0%
AAACAGGAAGATCCCTCCCT+AGG + Chr3:56293882-56293901 MsG0380014543.01.T01:CDS 50.0%
AACGGCTGCATCTTCAACTG+AGG - Chr3:56294569-56294588 None:intergenic 50.0%
ACCTCTTGGACAAGAACACC+AGG - Chr3:56293475-56293494 None:intergenic 50.0%
ATTTCCCCTGCCTCTTCATC+TGG - Chr3:56294818-56294837 None:intergenic 50.0%
CAACTTTACCAGTTGCCCCA+AGG - Chr3:56293634-56293653 None:intergenic 50.0%
CCTCTTGGACAAGAACACCA+GGG - Chr3:56293474-56293493 None:intergenic 50.0%
CGCGGTTACTTACGGTACAA+CGG - Chr3:56294587-56294606 None:intergenic 50.0%
CTTCTCACACAAAGTTCCCC+TGG - Chr3:56293914-56293933 None:intergenic 50.0%
GCATTTGTGGATGCTGAGAG+TGG + Chr3:56292542-56292561 MsG0380014543.01.T01:CDS 50.0%
GGATGCTGAGAGTGGAAAAG+GGG + Chr3:56292550-56292569 MsG0380014543.01.T01:CDS 50.0%
GTACCGGAACCGGAGAATAT+TGG - Chr3:56292460-56292479 None:intergenic 50.0%
GTGGATGCTGAGAGTGGAAA+AGG + Chr3:56292548-56292567 MsG0380014543.01.T01:CDS 50.0%
GTGTAGTCCAGTGGTATTCC+CGG - Chr3:56294041-56294060 None:intergenic 50.0%
GTTGCTGCCATGTGACTGAA+AGG + Chr3:56293650-56293669 MsG0380014543.01.T01:intron 50.0%
TAAAAGGGCAAAGGGCAAGC+CGG - Chr3:56293704-56293723 None:intergenic 50.0%
TGGCTTCACACTGGTGACAT+AGG + Chr3:56294174-56294193 MsG0380014543.01.T01:CDS 50.0%
! ATACGGGAGCTTTAGTGCAC+CGG + Chr3:56293682-56293701 MsG0380014543.01.T01:intron 50.0%
! GTTTCTGGAGGGGTAACCTT+GGG + Chr3:56293615-56293634 MsG0380014543.01.T01:intron 50.0%
! TTTCTGGAGGGGTAACCTTG+GGG + Chr3:56293616-56293635 MsG0380014543.01.T01:intron 50.0%
!! TGTTTCTGGAGGGGTAACCT+TGG + Chr3:56293614-56293633 MsG0380014543.01.T01:intron 50.0%
AGTTCCCCTGGTGTGTTCCT+AGG - Chr3:56293902-56293921 None:intergenic 55.0%
CCCTGGTGTTCTTGTCCAAG+AGG + Chr3:56293471-56293490 MsG0380014543.01.T01:CDS 55.0%
CCTGTGCCCTTTCAGTCACA+TGG - Chr3:56293660-56293679 None:intergenic 55.0%
GGGAGGGATCTTCCTGTTTC+AGG - Chr3:56293881-56293900 None:intergenic 55.0%
GGGCTACCTGTGATAGTCCT+AGG + Chr3:56292923-56292942 MsG0380014543.01.T01:CDS 55.0%
GGTTGCTCCTGCAGAGTTAG+AGG + Chr3:56294525-56294544 MsG0380014543.01.T01:intron 55.0%
GTTCCCCTGGTGTGTTCCTA+GGG - Chr3:56293901-56293920 None:intergenic 55.0%
TGGTGCGGCAGCAGTCATAA+TGG - Chr3:56293413-56293432 None:intergenic 55.0%
TTGAAGCAGGAGACAGGGCA+GGG + Chr3:56292987-56293006 MsG0380014543.01.T01:CDS 55.0%
! CCATGTGACTGAAAGGGCAC+AGG + Chr3:56293657-56293676 MsG0380014543.01.T01:intron 55.0%
! TCTCCGAAGGTGTAGTCCAG+TGG - Chr3:56294050-56294069 None:intergenic 55.0%
AGGGGTAACCTTGGGGCAAC+TGG + Chr3:56293623-56293642 MsG0380014543.01.T01:intron 60.0%
CCCTCCCTAGGAACACACCA+GGG + Chr3:56293894-56293913 MsG0380014543.01.T01:CDS 60.0%
CCCTGGTGTGTTCCTAGGGA+GGG - Chr3:56293897-56293916 None:intergenic 60.0%
CCTCCCTAGGAACACACCAG+GGG + Chr3:56293895-56293914 MsG0380014543.01.T01:CDS 60.0%
CTTGAAGCAGGAGACAGGGC+AGG + Chr3:56292986-56293005 MsG0380014543.01.T01:CDS 60.0%
TCCCTCCCTAGGAACACACC+AGG + Chr3:56293893-56293912 MsG0380014543.01.T01:CDS 60.0%
CCCCTGGTGTGTTCCTAGGG+AGG - Chr3:56293898-56293917 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 56292404 56295063 56292404 ID=MsG0380014543.01;Name=MsG0380014543.01
Chr3 mRNA 56292404 56295063 56292404 ID=MsG0380014543.01.T01;Parent=MsG0380014543.01;Name=MsG0380014543.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|6|0|554
Chr3 exon 56292404 56292826 56292404 ID=MsG0380014543.01.T01:exon:18401;Parent=MsG0380014543.01.T01
Chr3 exon 56292911 56293492 56292911 ID=MsG0380014543.01.T01:exon:18402;Parent=MsG0380014543.01.T01
Chr3 exon 56293758 56293950 56293758 ID=MsG0380014543.01.T01:exon:18403;Parent=MsG0380014543.01.T01
Chr3 exon 56294124 56294269 56294124 ID=MsG0380014543.01.T01:exon:18404;Parent=MsG0380014543.01.T01
Chr3 exon 56294526 56294593 56294526 ID=MsG0380014543.01.T01:exon:18405;Parent=MsG0380014543.01.T01
Chr3 exon 56294811 56295063 56294811 ID=MsG0380014543.01.T01:exon:18406;Parent=MsG0380014543.01.T01
Chr3 CDS 56292404 56292826 56292404 ID=MsG0380014543.01.T01:cds;Parent=MsG0380014543.01.T01
Chr3 CDS 56292911 56293492 56292911 ID=MsG0380014543.01.T01:cds;Parent=MsG0380014543.01.T01
Chr3 CDS 56293758 56293950 56293758 ID=MsG0380014543.01.T01:cds;Parent=MsG0380014543.01.T01
Chr3 CDS 56294124 56294269 56294124 ID=MsG0380014543.01.T01:cds;Parent=MsG0380014543.01.T01
Chr3 CDS 56294526 56294593 56294526 ID=MsG0380014543.01.T01:cds;Parent=MsG0380014543.01.T01
Chr3 CDS 56294811 56295063 56294811 ID=MsG0380014543.01.T01:cds;Parent=MsG0380014543.01.T01
Gene Sequence

>MsG0380014543.01.T01

ATGGGAGCCTACATAGAAAATTTTGTAGAAGAGAATGAACACATTTTTCGTAGCCAATATTCTCCGGTTCCGGTACCTGAAAATGTCACATTGCCGGAATTTGTGCTCCAAAATGCTGAACTATATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAAGGGGTAACTTATAGTGAGGTTGTGAGGGATATACATAGATTTTCAAAGGCATTAAGGTCTCTTGGTTTGAGAAAAGGGAATGTTGTGATAGTTGTGCTTCCAAATATTGTAGAGTATGCCATAATTGCTTTGGGAATCATGGATTCTGGATGTGTGTTTTCAGGAGCTAATCCAGCTTCACATACGTCGGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCCATGAAAAGGTGAAAAATCTAGGGCTACCTGTGATAGTCCTAGGAGATGAACTTGTTGAAGATGCTATGAATTGGAACAAACTTCTTGAAGCAGGAGACAGGGCAGGGAATGATTCAATGAAGGAACCAATTCACCAAAATGACCTTTGTGCCATGCCATTTTCATCAGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACACAGAAACCTAGTAGCAAATCTTTGTTCCACACTCTTTGGTGTAACACAAGAAATGATTGGAAAAGTCACTACATTAGGGTTAATTCCCTTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCTACTATTTGGAACAAAGGGAAAGTAGTGGTGATGGGAAAATATGATTTGAAAACATTTTTGAATGCTTTGATTACACATGAAGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGATTGGTTAAAAATCCTATTGTTGATCAATTTGATCTTAGTAAGCTTAAACTTCAAGCCATTATGACTGCTGCCGCACCACTTGCACCTGAATTACTTACTTCCTTTGAACATAAGTTCCCTGGTGTTCTTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATTACACTTACATATGCACAAAAATTATCTGGAAGTACACATAAAAATTCGGTCGGTTTCATCCTTCCGAATTTGGAAGTCAAGTTTATTGATCCTGAAACAGGAAGATCCCTCCCTAGGAACACACCAGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTTATTATAAACAAGTGGATGAGACTGCTCAGACTATTGACAAGAATGGATGGCTTCACACTGGTGACATAGGATTCATAGATGATGAAGAAAATGTTTTTATTGTTGATCGTATTAAGGAGTTGATTAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTCTCTCATTCCTCAGTTGAAGATGCAGCCGTTGTACCATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGAGTGAAGAGGACATTATGAACTATGTTGCATCCAATGCTGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTGGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATTAAGGAAAATAATTCCCTAACAAAATCTAACAAATTTTAA
Protein sequence

>MsG0380014543.01.T01

MGAYIENFVEENEHIFRSQYSPVPVPENVTLPEFVLQNAELYGDKVAFVDAESGKGVTYSEVVRDIHRFSKALRSLGLRKGNVVIVVLPNIVEYAIIALGIMDSGCVFSGANPASHTSEIKKQVESADAKLIVTNSSSHEKVKNLGLPVIVLGDELVEDAMNWNKLLEAGDRAGNDSMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTQEMIGKVTTLGLIPFFHIYGITGICCATIWNKGKVVVMGKYDLKTFLNALITHEVTFAPIVPPIILGLVKNPIVDQFDLSKLKLQAIMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTYAQKLSGSTHKNSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKEKMVEKIKENNSLTKSNKF*