AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015356.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015356.01.T01 MTR_3g068150 66.518 224 15 2 1 164 1 224 8.63e-83 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015356.01.T01 AT2G44920 52.000 175 24 2 50 164 50 224 6.78e-50 160
MsG0380015356.01.T01 AT2G44920 62.000 100 24 2 50 135 50 149 1.28e-31 113

Find 42 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCCTATCTCTCTGTTTC+TGG 0.179667 3:-68966009 MsG0380015356.01.T01:intron
TTTAAAGGTGCAAAATTATT+AGG 0.209764 3:-68965227 MsG0380015356.01.T01:CDS
ACTAGGGGACAAGATCTTTC+TGG 0.219620 3:-68965446 MsG0380015356.01.T01:CDS
TTCTTTGATGCTGATTTAAC+AGG 0.300432 3:-68965197 MsG0380015356.01.T01:intron
TAAATTGGCTTGACGCAGTA+TGG 0.313849 3:+68965246 None:intergenic
ACTGCGTCAAGCCAATTTAA+AGG 0.325638 3:-68965242 MsG0380015356.01.T01:CDS
TGATCCTGCACTTGCATTCA+AGG 0.342254 3:-68965788 MsG0380015356.01.T01:intron
GATGCTTGGTGAGTTTGCTT+TGG 0.375494 3:+68965892 None:intergenic
TAAGAGATGGTGATGAGGTT+TGG 0.381918 3:+68966064 None:intergenic
CATATGGTCAAGGAGTTACT+AGG 0.385923 3:-68965463 MsG0380015356.01.T01:CDS
TGGTGATGAATGCAGGGTGG+AGG 0.398777 3:-68965488 MsG0380015356.01.T01:intron
CTAGTAACTCCTTGACCATA+TGG 0.403791 3:+68965464 None:intergenic
CTAGGGGACAAGATCTTTCT+GGG 0.423220 3:-68965445 MsG0380015356.01.T01:CDS
CGAACCAGAAACAGAGAGAT+AGG 0.437434 3:+68966005 None:intergenic
GACAGAGTGAACTCATCAAC+TGG 0.437998 3:-68962113 MsG0380015356.01.T01:intron
AACCTCATCACCATCTCTTA+AGG 0.447203 3:-68966061 MsG0380015356.01.T01:CDS
AGAGATAGGAGTTGGTGAGC+AGG 0.464069 3:+68966019 None:intergenic
ATGCAGGGTGGAGGGCCATA+TGG 0.478492 3:-68965479 MsG0380015356.01.T01:intron
AGTTGGTGAGCAGGTTGAAG+AGG 0.491050 3:+68966028 None:intergenic
GGTGAGCAGGTTGAAGAGGA+AGG 0.497485 3:+68966032 None:intergenic
CAGAAACTCACATTATCATT+CGG 0.504813 3:-68965868 MsG0380015356.01.T01:CDS
ATCAATCTATCATGCGGATG+TGG 0.515784 3:+68966171 None:intergenic
TACCTCTGCAAAATTGCTGA+TGG 0.538634 3:-68962219 MsG0380015356.01.T01:CDS
AATTGCACAGCAATGTATCA+CGG 0.554496 3:+68962081 None:intergenic
ACCTCTGCAAAATTGCTGAT+GGG 0.554917 3:-68962218 MsG0380015356.01.T01:intron
AGAAACAGAGAGATAGGAGT+TGG 0.558423 3:+68966011 None:intergenic
TGATGAGGTTTGGAAGTTGA+AGG 0.562107 3:+68966074 None:intergenic
ATATGGTCAAGGAGTTACTA+GGG 0.565044 3:-68965462 MsG0380015356.01.T01:CDS
TATACCTTGAATGCAAGTGC+AGG 0.570494 3:+68965784 None:intergenic
GGTGATGAATGCAGGGTGGA+GGG 0.574556 3:-68965487 MsG0380015356.01.T01:intron
TATAATGTATATCATGTCAA+AGG 0.577746 3:-68961990 MsG0380015356.01.T01:three_prime_UTR
ATTGCACAGCAATGTATCAC+GGG 0.579298 3:+68962082 None:intergenic
GGTGGAGGGCCATATGGTCA+AGG 0.584439 3:-68965473 MsG0380015356.01.T01:CDS
ATGTGAGTTTCTGAGATGCT+TGG 0.612261 3:+68965878 None:intergenic
TTTGGAAGTTGAAGGCAAAG+AGG 0.617513 3:+68966082 None:intergenic
AAGGTGTTGACCTTAAGAGA+TGG 0.643063 3:+68966051 None:intergenic
TAACTGTAACTGTACAACAA+TGG 0.644974 3:-68966120 MsG0380015356.01.T01:exon
GACCTTAAGAGATGGTGATG+AGG 0.653487 3:+68966059 None:intergenic
ACACATATCAATCTATCATG+CGG 0.666603 3:+68966165 None:intergenic
GCACAGCAATGTATCACGGG+TGG 0.671947 3:+68962085 None:intergenic
TCACGTTGATCTTCTCTGAG+CGG 0.674168 3:+68962243 None:intergenic
TATGGTCAAGGAGTTACTAG+GGG 0.721516 3:-68965461 MsG0380015356.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTATATGTCTAAA+TGG - Chr3:68965882-68965901 MsG0380015356.01.T01:CDS 10.0%
!! TTAATAAAAGTTATAATTAG+TGG - Chr3:68963107-68963126 MsG0380015356.01.T01:intron 10.0%
!! TTATAATTAATAGCAAAATA+AGG + Chr3:68963694-68963713 None:intergenic 10.0%
!!! ATGTTTTGTTATTTATTTAT+TGG - Chr3:68965606-68965625 MsG0380015356.01.T01:intron 10.0%
!! AACTTGAATTAGATTTAATA+TGG - Chr3:68964574-68964593 MsG0380015356.01.T01:intron 15.0%
!! ACAATTGAAGAAAAATTATA+AGG + Chr3:68965120-68965139 None:intergenic 15.0%
!! ATATTAAATCTAATTCAAGT+TGG + Chr3:68964575-68964594 None:intergenic 15.0%
!!! ATCAAAAAAAGTTTTTTGTT+TGG - Chr3:68963838-68963857 MsG0380015356.01.T01:intron 15.0%
!!! CTTTTTGAAACAAAATATTA+AGG - Chr3:68964959-68964978 MsG0380015356.01.T01:intron 15.0%
!!! TATTAAATCTAATTCAAGTT+GGG + Chr3:68964574-68964593 None:intergenic 15.0%
!!! TTAAAGTTTTGTTCTTTTTT+TGG - Chr3:68962540-68962559 MsG0380015356.01.T01:intron 15.0%
!!! TTTTTTGGTTAACAAATAAT+GGG - Chr3:68962555-68962574 MsG0380015356.01.T01:intron 15.0%
!!! TTTTTTTGGTTAACAAATAA+TGG - Chr3:68962554-68962573 MsG0380015356.01.T01:intron 15.0%
!! AAAAAATACTATAGAGCATA+GGG - Chr3:68964015-68964034 MsG0380015356.01.T01:intron 20.0%
!! AAATAATAGAACTAGCAATT+AGG + Chr3:68964900-68964919 None:intergenic 20.0%
!! AATAATAGAACTAGCAATTA+GGG + Chr3:68964899-68964918 None:intergenic 20.0%
!! ACATTGAATTTACTTTCTTA+TGG - Chr3:68965507-68965526 MsG0380015356.01.T01:intron 20.0%
!! ACCAACTTATTAAAAATACT+AGG - Chr3:68963169-68963188 MsG0380015356.01.T01:intron 20.0%
!! ATAAGAAAGTAAATTCAATG+TGG + Chr3:68965508-68965527 None:intergenic 20.0%
!! CAACTTATTAAAAATACTAG+GGG - Chr3:68963171-68963190 MsG0380015356.01.T01:intron 20.0%
!! CCAACTTATTAAAAATACTA+GGG - Chr3:68963170-68963189 MsG0380015356.01.T01:intron 20.0%
!! TAAAAAATACTATAGAGCAT+AGG - Chr3:68964014-68964033 MsG0380015356.01.T01:intron 20.0%
!! TATAATGTATATCATGTCAA+AGG - Chr3:68966083-68966102 MsG0380015356.01.T01:CDS 20.0%
!! TCATCTAAGTTATGAATATA+TGG + Chr3:68963397-68963416 None:intergenic 20.0%
!! TTACTAATTCTATTAAGATC+AGG + Chr3:68964158-68964177 None:intergenic 20.0%
!! TTCTAATTTGATGAAATTTC+TGG + Chr3:68964213-68964232 None:intergenic 20.0%
!!! AAAAAAAGTTTTTTGTTTGG+CGG - Chr3:68963841-68963860 MsG0380015356.01.T01:intron 20.0%
!!! AGTAAACTTGCAATAAATTT+TGG - Chr3:68964396-68964415 MsG0380015356.01.T01:intron 20.0%
!!! ATAATTTTGCACCTTTAAAT+TGG + Chr3:68962845-68962864 None:intergenic 20.0%
!!! ATGCTCTATAGTATTTTTTA+GGG + Chr3:68964014-68964033 None:intergenic 20.0%
!!! TATGCTCTATAGTATTTTTT+AGG + Chr3:68964015-68964034 None:intergenic 20.0%
!!! TATTTGGTTTGGATTTATTT+TGG - Chr3:68963547-68963566 MsG0380015356.01.T01:intron 20.0%
!!! TTTAAAGGTGCAAAATTATT+AGG - Chr3:68962846-68962865 MsG0380015356.01.T01:intron 20.0%
!!! TTTATCCTTTTGGATTAATT+TGG - Chr3:68963628-68963647 MsG0380015356.01.T01:intron 20.0%
!!! TTTATGCTTTTGGATTTATT+TGG - Chr3:68963531-68963550 MsG0380015356.01.T01:intron 20.0%
!!! TTTATGTTTTCGATTTATCT+TGG - Chr3:68963577-68963596 MsG0380015356.01.T01:intron 20.0%
! AAACATTCATATTGAAGTGT+TGG + Chr3:68962335-68962354 None:intergenic 25.0%
! AAATTCAAAACCTTGCTTAA+GGG + Chr3:68964487-68964506 None:intergenic 25.0%
! AACAACCAAATTAATCCAAA+AGG + Chr3:68963636-68963655 None:intergenic 25.0%
! ACTCTATATCTAAGCTATTA+TGG - Chr3:68965367-68965386 MsG0380015356.01.T01:intron 25.0%
! ACTGAATCAAAATTTAGCAT+TGG - Chr3:68965231-68965250 MsG0380015356.01.T01:CDS 25.0%
! ATCAAAATTTAAGGATGAGT+TGG - Chr3:68964821-68964840 MsG0380015356.01.T01:intron 25.0%
! CTGAATCAAAATTTAGCATT+GGG - Chr3:68965232-68965251 MsG0380015356.01.T01:CDS 25.0%
! CTTCAATATGAATGTTTATC+TGG - Chr3:68962338-68962357 MsG0380015356.01.T01:intron 25.0%
! GAATGAGAATGAATAAAACT+TGG + Chr3:68964184-68964203 None:intergenic 25.0%
! GTGTTAGTAGAGAAAATAAA+CGG - Chr3:68964509-68964528 MsG0380015356.01.T01:intron 25.0%
! TAACGAACATATTTCGAATA+TGG + Chr3:68964238-68964257 None:intergenic 25.0%
! TATTAAGATCAGGATTTACA+GGG + Chr3:68964148-68964167 None:intergenic 25.0%
! TATTAGTTATCTACGAAGTA+CGG + Chr3:68962467-68962486 None:intergenic 25.0%
! TATTGCAAGTTTACTAGTTA+CGG + Chr3:68964391-68964410 None:intergenic 25.0%
! TCAAAATTTAAGGATGAGTT+GGG - Chr3:68964822-68964841 MsG0380015356.01.T01:intron 25.0%
! TGTTTAGTAATGTGTAGAAA+AGG + Chr3:68965394-68965413 None:intergenic 25.0%
! TTACAAGAGAAAACTATACT+GGG + Chr3:68965301-68965320 None:intergenic 25.0%
! TTATTCTGATCTATAACCTT+CGG + Chr3:68964651-68964670 None:intergenic 25.0%
! TTTACAAGAGAAAACTATAC+TGG + Chr3:68965302-68965321 None:intergenic 25.0%
!! AGTGAATTTTCTTTCATGTA+CGG - Chr3:68963057-68963076 MsG0380015356.01.T01:intron 25.0%
!! CATTCATTGTGATACATTTT+TGG + Chr3:68962913-68962932 None:intergenic 25.0%
!! TTGAGACTATTTTATCCTTT+TGG - Chr3:68963618-68963637 MsG0380015356.01.T01:intron 25.0%
!!! AAAAAAGTTTTTTGTTTGGC+GGG - Chr3:68963842-68963861 MsG0380015356.01.T01:intron 25.0%
!!! AGTTTAAGTTGATTTGATGA+CGG - Chr3:68962733-68962752 MsG0380015356.01.T01:intron 25.0%
!!! ATATTTTGAGTTTGAGTACA+TGG - Chr3:68965036-68965055 MsG0380015356.01.T01:intron 25.0%
!!! CAAATGTTTTGTTGCATATT+AGG - Chr3:68966136-68966155 MsG0380015356.01.T01:five_prime_UTR 25.0%
!!! CATTTGCTTTTCTTTCAAAA+TGG + Chr3:68966122-68966141 None:intergenic 25.0%
!!! CCCTAGTATTTTTAATAAGT+TGG + Chr3:68963173-68963192 None:intergenic 25.0%
!!! TCTATAGTATTTTTTAGGGA+TGG + Chr3:68964010-68964029 None:intergenic 25.0%
!!! TGAGACTTATTTTATGCTTT+TGG - Chr3:68963521-68963540 MsG0380015356.01.T01:intron 25.0%
!!! TTATTTTTTATGGTTCCACA+TGG - Chr3:68964613-68964632 MsG0380015356.01.T01:intron 25.0%
!!! TTTTGGATTAATTTGGTTGT+TGG - Chr3:68963635-68963654 MsG0380015356.01.T01:intron 25.0%
AAAATTCAAGCATGACGTTT+AGG - Chr3:68964685-68964704 MsG0380015356.01.T01:intron 30.0%
AACTTAGATGATGATTGACT+TGG - Chr3:68963406-68963425 MsG0380015356.01.T01:intron 30.0%
AATCTGAATTCATCATGTCT+AGG - Chr3:68964118-68964137 MsG0380015356.01.T01:intron 30.0%
AATTATGTTACGACGACAAT+AGG - Chr3:68963352-68963371 MsG0380015356.01.T01:intron 30.0%
AATTCAAAACCTTGCTTAAG+GGG + Chr3:68964486-68964505 None:intergenic 30.0%
ACACATATCAATCTATCATG+CGG + Chr3:68961911-68961930 None:intergenic 30.0%
ACTGATCGGATCAAAATTTA+AGG - Chr3:68964812-68964831 MsG0380015356.01.T01:intron 30.0%
AGTTCTATTATGTTGTGATG+AGG - Chr3:68964936-68964955 MsG0380015356.01.T01:intron 30.0%
ATATCATGCAACCAAAAGAA+AGG - Chr3:68964059-68964078 MsG0380015356.01.T01:intron 30.0%
ATCTGAATTCATCATGTCTA+GGG - Chr3:68964119-68964138 MsG0380015356.01.T01:intron 30.0%
ATGAATGTAGTATACACACA+TGG - Chr3:68962926-68962945 MsG0380015356.01.T01:intron 30.0%
CAAAATTTAAGGATGAGTTG+GGG - Chr3:68964823-68964842 MsG0380015356.01.T01:intron 30.0%
CAAATTCAAAACCTTGCTTA+AGG + Chr3:68964488-68964507 None:intergenic 30.0%
CAGAAACTCACATTATCATT+CGG - Chr3:68962205-68962224 MsG0380015356.01.T01:intron 30.0%
CTAACTCTACCATCTATTAT+AGG - Chr3:68965416-68965435 MsG0380015356.01.T01:intron 30.0%
CTATAATAGATGGTAGAGTT+AGG + Chr3:68965418-68965437 None:intergenic 30.0%
CTATTAAGATCAGGATTTAC+AGG + Chr3:68964149-68964168 None:intergenic 30.0%
CTTATTAAAAATACTAGGGG+TGG - Chr3:68963174-68963193 MsG0380015356.01.T01:intron 30.0%
GGAAGGTAATAACAAATGAA+GGG + Chr3:68964370-68964389 None:intergenic 30.0%
GTTGTGTTATAAACAAAACG+TGG - Chr3:68964296-68964315 MsG0380015356.01.T01:intron 30.0%
TAACTGTAACTGTACAACAA+TGG - Chr3:68961953-68961972 MsG0380015356.01.T01:three_prime_UTR 30.0%
TAGTAGAGAAAATAAACGGT+AGG - Chr3:68964513-68964532 MsG0380015356.01.T01:intron 30.0%
TTATGGTCTATAGAACTGAT+CGG - Chr3:68964798-68964817 MsG0380015356.01.T01:intron 30.0%
TTGTAAACGTATGATATCCT+TGG - Chr3:68965315-68965334 MsG0380015356.01.T01:intron 30.0%
! ATCAAAATTTAGCATTGGGT+AGG - Chr3:68965236-68965255 MsG0380015356.01.T01:CDS 30.0%
! GCTTTTGGATTTATTTGGTT+TGG - Chr3:68963536-68963555 MsG0380015356.01.T01:intron 30.0%
! TCAAAATTTAGCATTGGGTA+GGG - Chr3:68965237-68965256 MsG0380015356.01.T01:CDS 30.0%
! TCTTATGCTTTTGGATTATC+TGG - Chr3:68963483-68963502 MsG0380015356.01.T01:intron 30.0%
! TTCTTTCATGTACGGATTTT+AGG - Chr3:68963065-68963084 MsG0380015356.01.T01:intron 30.0%
!! AACAAATAATGGGTATGGTT+TGG - Chr3:68962565-68962584 MsG0380015356.01.T01:intron 30.0%
!! GTTTAAGTTGATTTGATGAC+GGG - Chr3:68962734-68962753 MsG0380015356.01.T01:intron 30.0%
!! TCAGTTCTATCGATTCAATA+AGG + Chr3:68963137-68963156 None:intergenic 30.0%
!! TGAATCGATAGAACTGATTT+TGG - Chr3:68963140-68963159 MsG0380015356.01.T01:intron 30.0%
!! TGGTTAACAAATAATGGGTA+TGG - Chr3:68962560-68962579 MsG0380015356.01.T01:intron 30.0%
!! TTCTTTGATGCTGATTTAAC+AGG - Chr3:68962876-68962895 MsG0380015356.01.T01:intron 30.0%
!! TTGATGAAATTTCTGGTTCT+AGG + Chr3:68964206-68964225 None:intergenic 30.0%
!! TTTAAGTTGATTTGATGACG+GGG - Chr3:68962735-68962754 MsG0380015356.01.T01:intron 30.0%
!!! TTGTGATACATTTTTGGTGT+TGG + Chr3:68962907-68962926 None:intergenic 30.0%
AATTGCACAGCAATGTATCA+CGG + Chr3:68965995-68966014 None:intergenic 35.0%
AGCTTGTGTCCTATAATAGA+TGG + Chr3:68965428-68965447 None:intergenic 35.0%
ATATGGTCAAGGAGTTACTA+GGG - Chr3:68962611-68962630 MsG0380015356.01.T01:intron 35.0%
ATTGTTTCCAACGAGTTAAG+CGG + Chr3:68963335-68963354 None:intergenic 35.0%
CATCAAGCAAGACTTCAAAA+CGG - Chr3:68962674-68962693 MsG0380015356.01.T01:intron 35.0%
CCAAAAGAAAGGAAAAGACA+TGG - Chr3:68964070-68964089 MsG0380015356.01.T01:intron 35.0%
CGGAAGGTAATAACAAATGA+AGG + Chr3:68964371-68964390 None:intergenic 35.0%
GGGGAGATATTGAATGTAAA+TGG + Chr3:68962962-68962981 None:intergenic 35.0%
TCAAGATATTAGCACTGTGA+GGG - Chr3:68965701-68965720 MsG0380015356.01.T01:intron 35.0%
TTCAAGATATTAGCACTGTG+AGG - Chr3:68965700-68965719 MsG0380015356.01.T01:intron 35.0%
TTGTTCTGTTTCCCTCAAAT+AGG - Chr3:68964540-68964559 MsG0380015356.01.T01:intron 35.0%
! ATTGAGTTTGTTCAGGTCTA+GGG - Chr3:68965179-68965198 MsG0380015356.01.T01:intron 35.0%
! CCATGTCTTTTCCTTTCTTT+TGG + Chr3:68964073-68964092 None:intergenic 35.0%
! TGAGACTTGTCTTATGCTTT+TGG - Chr3:68963474-68963493 MsG0380015356.01.T01:intron 35.0%
!! TGATGCTGATTTAACAGGTT+TGG - Chr3:68962881-68962900 MsG0380015356.01.T01:intron 35.0%
!!! ATTTTTTAGGGATGGCAAAG+TGG + Chr3:68964002-68964021 None:intergenic 35.0%
!!! TTGAACTCGCTTTTTATCGT+TGG - Chr3:68963260-68963279 MsG0380015356.01.T01:intron 35.0%
!!! TTTCTTATGGCTAGCTTTTC+TGG - Chr3:68965520-68965539 MsG0380015356.01.T01:intron 35.0%
!!! TTTTTTAGGGATGGCAAAGT+GGG + Chr3:68964001-68964020 None:intergenic 35.0%
AAAATACTAGGGGTGGCAAA+AGG - Chr3:68963181-68963200 MsG0380015356.01.T01:intron 40.0%
AAATACTAGGGGTGGCAAAA+GGG - Chr3:68963182-68963201 MsG0380015356.01.T01:intron 40.0%
AACCTCATCACCATCTCTTA+AGG - Chr3:68962012-68962031 MsG0380015356.01.T01:three_prime_UTR 40.0%
AACGTGGATGCTTATTGCAA+AGG - Chr3:68964312-68964331 MsG0380015356.01.T01:intron 40.0%
AACTCCTATCTCTCTGTTTC+TGG - Chr3:68962064-68962083 MsG0380015356.01.T01:exon 40.0%
AATTAGGGATGAGAACTGAG+AGG + Chr3:68964884-68964903 None:intergenic 40.0%
AATTTGACCAGCAAAGCTTC+AGG - Chr3:68964753-68964772 MsG0380015356.01.T01:intron 40.0%
ACATGGAAAGCGAGTTCTTT+GGG - Chr3:68964087-68964106 MsG0380015356.01.T01:intron 40.0%
ACCTCTGCAAAATTGCTGAT+GGG - Chr3:68965855-68965874 MsG0380015356.01.T01:CDS 40.0%
ACTGCGTCAAGCCAATTTAA+AGG - Chr3:68962831-68962850 MsG0380015356.01.T01:intron 40.0%
ACTGGGTGAGAAAGTAGAAT+TGG + Chr3:68965284-68965303 None:intergenic 40.0%
AGAAACAGAGAGATAGGAGT+TGG + Chr3:68962065-68962084 None:intergenic 40.0%
ATTCACTTGTCACATTTGCC+AGG + Chr3:68963044-68963063 None:intergenic 40.0%
ATTGCACAGCAATGTATCAC+GGG + Chr3:68965994-68966013 None:intergenic 40.0%
CACGGACACCAAACAAAATA+CGG + Chr3:68962431-68962450 None:intergenic 40.0%
CATATGGTCAAGGAGTTACT+AGG - Chr3:68962610-68962629 MsG0380015356.01.T01:intron 40.0%
CGACAAACATTGACACTTGT+CGG + Chr3:68962367-68962386 None:intergenic 40.0%
CTAGTAACTCCTTGACCATA+TGG + Chr3:68962612-68962631 None:intergenic 40.0%
CTGGGTGAGAAAGTAGAATT+GGG + Chr3:68965283-68965302 None:intergenic 40.0%
GCAAGTTTACTAGTTACGGA+AGG + Chr3:68964387-68964406 None:intergenic 40.0%
TAACATATGAGCTGCATGTC+TGG + Chr3:68964427-68964446 None:intergenic 40.0%
TACCTCTGCAAAATTGCTGA+TGG - Chr3:68965854-68965873 MsG0380015356.01.T01:CDS 40.0%
TACGGACACTAACACAAACA+CGG + Chr3:68962449-68962468 None:intergenic 40.0%
TATACCTTGAATGCAAGTGC+AGG + Chr3:68962292-68962311 None:intergenic 40.0%
TATGGTCAAGGAGTTACTAG+GGG - Chr3:68962612-68962631 MsG0380015356.01.T01:intron 40.0%
TATGTTACGACGACAATAGG+AGG - Chr3:68963355-68963374 MsG0380015356.01.T01:intron 40.0%
TGAACAAACTCAATGCTCTG+CGG + Chr3:68965173-68965192 None:intergenic 40.0%
TGAAGCTTTGCTGGTCAAAT+TGG + Chr3:68964754-68964773 None:intergenic 40.0%
TGATGAGGTTTGGAAGTTGA+AGG + Chr3:68962002-68962021 None:intergenic 40.0%
TTCACTTGTCACATTTGCCA+GGG + Chr3:68963043-68963062 None:intergenic 40.0%
TTGTATCTTCTCCTCAAGCA+GGG + Chr3:68965576-68965595 None:intergenic 40.0%
TTGTTTCCAACGAGTTAAGC+GGG + Chr3:68963334-68963353 None:intergenic 40.0%
TTTGGAAGTTGAAGGCAAAG+AGG + Chr3:68961994-68962013 None:intergenic 40.0%
! AGCAAAGCTTCAGGTTTGTT+CGG - Chr3:68964762-68964781 MsG0380015356.01.T01:intron 40.0%
! ATCGCTAACGAAGTTGTTTC+TGG - Chr3:68965936-68965955 MsG0380015356.01.T01:intron 40.0%
! ATGGCTTTTAGATGTACCGA+AGG - Chr3:68964632-68964651 MsG0380015356.01.T01:intron 40.0%
! ATTTAAGGATGAGTTGGGGT+TGG - Chr3:68964827-68964846 MsG0380015356.01.T01:intron 40.0%
! CATTGAGTTTGTTCAGGTCT+AGG - Chr3:68965178-68965197 MsG0380015356.01.T01:intron 40.0%
! CTTTCTGGGAAAGATTTCAG+TGG - Chr3:68962642-68962661 MsG0380015356.01.T01:intron 40.0%
! TAAGAGATGGTGATGAGGTT+TGG + Chr3:68962012-68962031 None:intergenic 40.0%
! TGGTGTGTCCGTATTTTGTT+TGG - Chr3:68962420-68962439 MsG0380015356.01.T01:intron 40.0%
! TTTAGCATTGGGTAGGGAAA+AGG - Chr3:68965243-68965262 MsG0380015356.01.T01:CDS 40.0%
!! AAGGTGTTGACCTTAAGAGA+TGG + Chr3:68962025-68962044 None:intergenic 40.0%
!! ATGGTTTGGTGATGAATGCA+GGG - Chr3:68962579-68962598 MsG0380015356.01.T01:intron 40.0%
!! ATGTGAGTTTCTGAGATGCT+TGG + Chr3:68962198-68962217 None:intergenic 40.0%
!! TAAATTGGCTTGACGCAGTA+TGG + Chr3:68962830-68962849 None:intergenic 40.0%
!! TATGGTTTGGTGATGAATGC+AGG - Chr3:68962578-68962597 MsG0380015356.01.T01:intron 40.0%
!! TCGTCTCGTCTCGTTTTTAA+CGG - Chr3:68963942-68963961 MsG0380015356.01.T01:intron 40.0%
!!! CTCGGTCACTAATTTTGACT+CGG - Chr3:68963918-68963937 MsG0380015356.01.T01:intron 40.0%
!!! TCGTTTTTAACGGGCTTAGA+CGG - Chr3:68963952-68963971 MsG0380015356.01.T01:intron 40.0%
AAACCTTGCTTAAGGGGAAC+TGG + Chr3:68964480-68964499 None:intergenic 45.0%
AATCCAGTTCCCCTTAAGCA+AGG - Chr3:68964474-68964493 MsG0380015356.01.T01:intron 45.0%
ACGACTCTTAAGGACGAGTT+TGG + Chr3:68964720-68964739 None:intergenic 45.0%
ACTAGGGGACAAGATCTTTC+TGG - Chr3:68962627-68962646 MsG0380015356.01.T01:intron 45.0%
ACTGAGAGGCGAGTAAGTAA+CGG + Chr3:68964870-68964889 None:intergenic 45.0%
AGGGCAGAAGGTAGTCATTT+AGG - Chr3:68965342-68965361 MsG0380015356.01.T01:intron 45.0%
ATCAGCACCTGACATGACAA+CGG + Chr3:68962987-68963006 None:intergenic 45.0%
ATGGAAAGCGAGTTCTTTGG+GGG - Chr3:68964089-68964108 MsG0380015356.01.T01:intron 45.0%
CAGGGGTTGTATATCAACCT+AGG + Chr3:68965558-68965577 None:intergenic 45.0%
CATGGAAAGCGAGTTCTTTG+GGG - Chr3:68964088-68964107 MsG0380015356.01.T01:intron 45.0%
CCTTAAGAGTCGTCATGTCT+CGG - Chr3:68964727-68964746 MsG0380015356.01.T01:intron 45.0%
CGAACCAGAAACAGAGAGAT+AGG + Chr3:68962071-68962090 None:intergenic 45.0%
CGGTACATCTAAAAGCCATG+TGG + Chr3:68964631-68964650 None:intergenic 45.0%
CTAGGGGACAAGATCTTTCT+GGG - Chr3:68962628-68962647 MsG0380015356.01.T01:intron 45.0%
GAACAAACCTGAAGCTTTGC+TGG + Chr3:68964763-68964782 None:intergenic 45.0%
GAACAAACTCAATGCTCTGC+GGG + Chr3:68965172-68965191 None:intergenic 45.0%
GACAGAGTGAACTCATCAAC+TGG - Chr3:68965960-68965979 MsG0380015356.01.T01:intron 45.0%
GACATGGAAAGCGAGTTCTT+TGG - Chr3:68964086-68964105 MsG0380015356.01.T01:intron 45.0%
GATATTAGCACTGTGAGGGA+AGG - Chr3:68965705-68965724 MsG0380015356.01.T01:intron 45.0%
GGGTCAGTAGACCTATTTGA+GGG + Chr3:68964554-68964573 None:intergenic 45.0%
GTATATGTGCTAGTGCTTCG+TGG - Chr3:68962400-68962419 MsG0380015356.01.T01:intron 45.0%
GTATGATATCCTTGGACGCA+GGG - Chr3:68965323-68965342 MsG0380015356.01.T01:intron 45.0%
GTTGTATCTTCTCCTCAAGC+AGG + Chr3:68965577-68965596 None:intergenic 45.0%
TATATCAACCTAGGCAGCCT+TGG + Chr3:68965549-68965568 None:intergenic 45.0%
TCACGTTGATCTTCTCTGAG+CGG + Chr3:68965833-68965852 None:intergenic 45.0%
TCACTCTACCACTCTTCACA+GGG - Chr3:68962151-68962170 MsG0380015356.01.T01:intron 45.0%
TGATATACAACCCCTGCTTG+AGG - Chr3:68965562-68965581 MsG0380015356.01.T01:intron 45.0%
TGATCCTGCACTTGCATTCA+AGG - Chr3:68962285-68962304 MsG0380015356.01.T01:intron 45.0%
TGGGTCAGTAGACCTATTTG+AGG + Chr3:68964555-68964574 None:intergenic 45.0%
TGTATCTTCTCCTCAAGCAG+GGG + Chr3:68965575-68965594 None:intergenic 45.0%
! ACCCATCAGCAATTTTGCAG+AGG + Chr3:68965859-68965878 None:intergenic 45.0%
! GACCTTAAGAGATGGTGATG+AGG + Chr3:68962017-68962036 None:intergenic 45.0%
! GATGCTTGGTGAGTTTGCTT+TGG + Chr3:68962184-68962203 None:intergenic 45.0%
! GCAAAGCTTCAGGTTTGTTC+GGG - Chr3:68964763-68964782 MsG0380015356.01.T01:intron 45.0%
! TTAGAAGTGCAGACTTTCCC+TGG - Chr3:68963023-68963042 MsG0380015356.01.T01:intron 45.0%
! TTCAGGTTTGTTCGGGTCTT+GGG - Chr3:68964770-68964789 MsG0380015356.01.T01:intron 45.0%
!! CATGTCAGGTGCTGATCTTT+CGG - Chr3:68962991-68963010 MsG0380015356.01.T01:intron 45.0%
!! CGTCTCGTCTCGTTTTTAAC+GGG - Chr3:68963943-68963962 MsG0380015356.01.T01:intron 45.0%
!! GCAGAGCATTGAGTTTGTTC+AGG - Chr3:68965172-68965191 MsG0380015356.01.T01:intron 45.0%
!!! AAGTTTTTTGTTTGGCGGGC+CGG - Chr3:68963846-68963865 MsG0380015356.01.T01:intron 45.0%
!!! CGTTTTTAACGGGCTTAGAC+GGG - Chr3:68963953-68963972 MsG0380015356.01.T01:intron 45.0%
!!! CTCGCTTTTTATCGTTGGCT+CGG - Chr3:68963265-68963284 MsG0380015356.01.T01:intron 45.0%
!!! CTTATGGCTAGCTTTTCTGG+CGG - Chr3:68965523-68965542 MsG0380015356.01.T01:intron 45.0%
!!! GTTTTTAACGGGCTTAGACG+GGG - Chr3:68963954-68963973 MsG0380015356.01.T01:intron 45.0%
!!! TTTTTATCGTTGGCTCGGCT+CGG - Chr3:68963270-68963289 MsG0380015356.01.T01:intron 45.0%
!! AATAAAAAATATATAAGAAT+AGG + Chr3:68963770-68963789 None:intergenic 5.0%
!!! GATATATATTTTATTTTTTA+TGG - Chr3:68964603-68964622 MsG0380015356.01.T01:intron 5.0%
AGCATGACGTTTAGGTGAGC+TGG - Chr3:68964693-68964712 MsG0380015356.01.T01:intron 50.0%
AGCGGCACATCAGTGAAATC+TGG + Chr3:68965815-68965834 None:intergenic 50.0%
CCGAGACATGACGACTCTTA+AGG + Chr3:68964730-68964749 None:intergenic 50.0%
CGCCAAAATAGCGAGCCAAA+CGG + Chr3:68963225-68963244 None:intergenic 50.0%
CGTATGATATCCTTGGACGC+AGG - Chr3:68965322-68965341 MsG0380015356.01.T01:intron 50.0%
CTCACTCTACCACTCTTCAC+AGG - Chr3:68962150-68962169 MsG0380015356.01.T01:intron 50.0%
CTGAGAGGCGAGTAAGTAAC+GGG + Chr3:68964869-68964888 None:intergenic 50.0%
GATTGCTTCCCTGTGAAGAG+TGG + Chr3:68962162-68962181 None:intergenic 50.0%
GCCAAAATAGCGAGCCAAAC+GGG + Chr3:68963224-68963243 None:intergenic 50.0%
GTTACGACGACAATAGGAGG+AGG - Chr3:68963358-68963377 MsG0380015356.01.T01:intron 50.0%
TCAGCACCTGACATGACAAC+GGG + Chr3:68962986-68963005 None:intergenic 50.0%
TCGGGTCTTGGGACAAGTTA+TGG - Chr3:68964781-68964800 MsG0380015356.01.T01:intron 50.0%
TTTAGGGATGGCAAAGTGGG+CGG + Chr3:68963998-68964017 None:intergenic 50.0%
! CTTCAGGTTTGTTCGGGTCT+TGG - Chr3:68964769-68964788 MsG0380015356.01.T01:intron 50.0%
!! AGAGATAGGAGTTGGTGAGC+AGG + Chr3:68962057-68962076 None:intergenic 50.0%
!! AGTTGGTGAGCAGGTTGAAG+AGG + Chr3:68962048-68962067 None:intergenic 50.0%
!! CGTTTGGCTCGCTATTTTGG+CGG - Chr3:68963223-68963242 MsG0380015356.01.T01:intron 50.0%
!! GTTTGGTGATGAATGCAGGG+TGG - Chr3:68962582-68962601 MsG0380015356.01.T01:intron 50.0%
!!! GTTTGGCTCGCTATTTTGGC+GGG - Chr3:68963224-68963243 MsG0380015356.01.T01:intron 50.0%
AAATAGCGAGCCAAACGGGC+CGG + Chr3:68963220-68963239 None:intergenic 55.0%
ACAATAGGAGGAGGAGGAGG+AGG - Chr3:68963367-68963386 MsG0380015356.01.T01:intron 55.0%
ACCTGACATGACAACGGGTG+GGG + Chr3:68962981-68963000 None:intergenic 55.0%
ACGACAATAGGAGGAGGAGG+AGG - Chr3:68963364-68963383 MsG0380015356.01.T01:intron 55.0%
ACGACGACAATAGGAGGAGG+AGG - Chr3:68963361-68963380 MsG0380015356.01.T01:intron 55.0%
CACCTGACATGACAACGGGT+GGG + Chr3:68962982-68963001 None:intergenic 55.0%
CTCGCAAGTCCGCCACTAAA+CGG - Chr3:68963877-68963896 MsG0380015356.01.T01:intron 55.0%
GCACAGCAATGTATCACGGG+TGG + Chr3:68965991-68966010 None:intergenic 55.0%
GGTGATGAATGCAGGGTGGA+GGG - Chr3:68962586-68962605 MsG0380015356.01.T01:intron 55.0%
TCGCAAGTCCGCCACTAAAC+GGG - Chr3:68963878-68963897 MsG0380015356.01.T01:intron 55.0%
! GGTGAGCAGGTTGAAGAGGA+AGG + Chr3:68962044-68962063 None:intergenic 55.0%
! TGGTGATGAATGCAGGGTGG+AGG - Chr3:68962585-68962604 MsG0380015356.01.T01:intron 55.0%
!! GCCCGTTTGGCTCGCTATTT+TGG - Chr3:68963220-68963239 MsG0380015356.01.T01:intron 55.0%
!! TTAGTGGCGGACTTGCGAGT+TGG + Chr3:68963876-68963895 None:intergenic 55.0%
!! TTTAACGGGCTTAGACGGGG+CGG - Chr3:68963957-68963976 MsG0380015356.01.T01:intron 55.0%
AAACGGGGCGGGGTGAGATT+TGG - Chr3:68963894-68963913 MsG0380015356.01.T01:intron 60.0%
AAGTCCGCCACTAAACGGGG+CGG - Chr3:68963882-68963901 MsG0380015356.01.T01:intron 60.0%
ATCCTTGGACGCAGGGCAGA+AGG - Chr3:68965330-68965349 MsG0380015356.01.T01:intron 60.0%
ATGCAGGGTGGAGGGCCATA+TGG - Chr3:68962594-68962613 MsG0380015356.01.T01:intron 60.0%
CGCAAGTCCGCCACTAAACG+GGG - Chr3:68963879-68963898 MsG0380015356.01.T01:intron 60.0%
GCACCTGACATGACAACGGG+TGG + Chr3:68962983-68963002 None:intergenic 60.0%
GGCGGGGTGAGATTTGGACT+CGG - Chr3:68963900-68963919 MsG0380015356.01.T01:intron 60.0%
GGTGGAGGGCCATATGGTCA+AGG - Chr3:68962600-68962619 MsG0380015356.01.T01:intron 60.0%
TACCTTCTGCCCTGCGTCCA+AGG + Chr3:68965335-68965354 None:intergenic 60.0%
TCCCCACCCGTTGTCATGTC+AGG - Chr3:68962977-68962996 MsG0380015356.01.T01:intron 60.0%
TGGCAAAAGGGCTTGACCGC+CGG - Chr3:68963194-68963213 MsG0380015356.01.T01:intron 60.0%
TTGAAAAGCGGGGCGGGCAA+GGG - Chr3:68963295-68963314 MsG0380015356.01.T01:intron 60.0%
!! CTCGGCTCGGCGTTGAAAAG+CGG - Chr3:68963283-68963302 MsG0380015356.01.T01:intron 60.0%
!! CTTAGACGGGGCGGGCTAAA+CGG - Chr3:68963966-68963985 MsG0380015356.01.T01:intron 60.0%
!! TCGGCTCGGCGTTGAAAAGC+GGG - Chr3:68963284-68963303 MsG0380015356.01.T01:intron 60.0%
!! TTAACGGGCTTAGACGGGGC+GGG - Chr3:68963958-68963977 MsG0380015356.01.T01:intron 60.0%
!! TTAGACGGGGCGGGCTAAAC+GGG - Chr3:68963967-68963986 MsG0380015356.01.T01:intron 60.0%
!!! GCTAGCTTTTCTGGCGGCCA+AGG - Chr3:68965529-68965548 MsG0380015356.01.T01:intron 60.0%
AAAAGGGCTTGACCGCCGGC+CGG - Chr3:68963198-68963217 MsG0380015356.01.T01:intron 65.0%
AGGCGGCCCGCTTAACTCGT+TGG - Chr3:68963325-68963344 MsG0380015356.01.T01:intron 65.0%
AGTCCGCCACTAAACGGGGC+GGG - Chr3:68963883-68963902 MsG0380015356.01.T01:intron 65.0%
GTTGAAAAGCGGGGCGGGCA+AGG - Chr3:68963294-68963313 MsG0380015356.01.T01:intron 65.0%
TCTCACCCCGCCCCGTTTAG+TGG + Chr3:68963892-68963911 None:intergenic 65.0%
! CGGCTCGGCGTTGAAAAGCG+GGG - Chr3:68963285-68963304 MsG0380015356.01.T01:intron 65.0%
! CTCGGCGTTGAAAAGCGGGG+CGG - Chr3:68963288-68963307 MsG0380015356.01.T01:intron 65.0%
! TCGGCGTTGAAAAGCGGGGC+GGG - Chr3:68963289-68963308 MsG0380015356.01.T01:intron 65.0%
!! GTGGCGGACTTGCGAGTTGG+CGG + Chr3:68963873-68963892 None:intergenic 65.0%
!! TAGACGGGGCGGGCTAAACG+GGG - Chr3:68963968-68963987 MsG0380015356.01.T01:intron 65.0%
!! TGGCGGACTTGCGAGTTGGC+GGG + Chr3:68963872-68963891 None:intergenic 65.0%
AAAAGCGGGGCGGGCAAGGG+TGG - Chr3:68963298-68963317 MsG0380015356.01.T01:intron 70.0%
AAAGCGGGGCGGGCAAGGGT+GGG - Chr3:68963299-68963318 MsG0380015356.01.T01:intron 70.0%
CACCCCGCCCCGTTTAGTGG+CGG + Chr3:68963889-68963908 None:intergenic 70.0%
GTCCGCCACTAAACGGGGCG+GGG - Chr3:68963884-68963903 MsG0380015356.01.T01:intron 70.0%
TCTGGCGGCCAAGGCTGCCT+AGG - Chr3:68965538-68965557 MsG0380015356.01.T01:intron 70.0%
! GGACTTGCGAGTTGGCGGGC+CGG + Chr3:68963868-68963887 None:intergenic 70.0%
AAGCGGGGCGGGCAAGGGTG+GGG - Chr3:68963300-68963319 MsG0380015356.01.T01:intron 75.0%
AGCGAGCCAAACGGGCCGGC+CGG + Chr3:68963216-68963235 None:intergenic 75.0%
!! ACGGGGCGGGCTAAACGGGG+CGG - Chr3:68963971-68963990 MsG0380015356.01.T01:intron 75.0%
! CGGGCAAGGGTGGGGCGAGG+CGG - Chr3:68963308-68963327 MsG0380015356.01.T01:intron 80.0%
! GAGCCAAACGGGCCGGCCGG+CGG + Chr3:68963213-68963232 None:intergenic 80.0%
! TGACCGCCGGCCGGCCCGTT+TGG - Chr3:68963207-68963226 MsG0380015356.01.T01:intron 80.0%
!!! CGGGGCGGGCTAAACGGGGC+GGG - Chr3:68963972-68963991 MsG0380015356.01.T01:intron 80.0%
! GGGCGGGCAAGGGTGGGGCG+AGG - Chr3:68963305-68963324 MsG0380015356.01.T01:intron 85.0%
Chromosome Type Strat End Strand Name
Chr3 gene 68961904 68966191 68961904 ID=MsG0380015356.01;Name=MsG0380015356.01
Chr3 mRNA 68961904 68966191 68961904 ID=MsG0380015356.01.T01;Parent=MsG0380015356.01;Name=MsG0380015356.01.T01;_AED=0.48;_eAED=0.48;_QI=68|0.6|0.5|1|1|1|6|175|164
Chr3 exon 68961904 68962130 68961904 ID=MsG0380015356.01.T01:exon:13704;Parent=MsG0380015356.01.T01
Chr3 exon 68962219 68962279 68962219 ID=MsG0380015356.01.T01:exon:13703;Parent=MsG0380015356.01.T01
Chr3 exon 68965198 68965269 68965198 ID=MsG0380015356.01.T01:exon:13702;Parent=MsG0380015356.01.T01
Chr3 exon 68965435 68965495 68965435 ID=MsG0380015356.01.T01:exon:13701;Parent=MsG0380015356.01.T01
Chr3 exon 68965789 68965923 68965789 ID=MsG0380015356.01.T01:exon:13700;Parent=MsG0380015356.01.T01
Chr3 exon 68966010 68966191 68966010 ID=MsG0380015356.01.T01:exon:13699;Parent=MsG0380015356.01.T01
Chr3 five_prime_UTR 68966124 68966191 68966124 ID=MsG0380015356.01.T01:five_prime_utr;Parent=MsG0380015356.01.T01
Chr3 CDS 68966010 68966123 68966010 ID=MsG0380015356.01.T01:cds;Parent=MsG0380015356.01.T01
Chr3 CDS 68965789 68965923 68965789 ID=MsG0380015356.01.T01:cds;Parent=MsG0380015356.01.T01
Chr3 CDS 68965435 68965495 68965435 ID=MsG0380015356.01.T01:cds;Parent=MsG0380015356.01.T01
Chr3 CDS 68965198 68965269 68965198 ID=MsG0380015356.01.T01:cds;Parent=MsG0380015356.01.T01
Chr3 CDS 68962219 68962279 68962219 ID=MsG0380015356.01.T01:cds;Parent=MsG0380015356.01.T01
Chr3 CDS 68962079 68962130 68962079 ID=MsG0380015356.01.T01:cds;Parent=MsG0380015356.01.T01
Chr3 three_prime_UTR 68961904 68962078 68961904 ID=MsG0380015356.01.T01:three_prime_utr;Parent=MsG0380015356.01.T01
Gene Sequence

>MsG0380015356.01.T01

ATGGCTCTTTTTCTGAACGCCTCTTTGCCTTCAACTTCCAAACCTCATCACCATCTCTTAAGGTCAACACCTTCCTCTTCAACCTGCTCACCAACTCCTATCTCTCTGTTTCTGGGAAGCAATCCAAAGCAAACTCACCAAGCATCTCAGAAACTCACATTATCATTCGGTGAATCAGTGTCTAGTGCAGCTCTAGTTGCTCTTTTATCTGCTTCTCTCTTCTTCGTTGATCCTGCACTTGCATTCAAGGGTGGAGGGCCATATGGTCAAGGAGTTACTAGGGGACAAGATCTTTCTGGGAAAGATTTCATCCATACTGCGTCAAGCCAATTTAAAGGTGCAAAATTATTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGATTTCACTGATGTGCCGCTCAGAGAAGATCAACGTGAATACCTCTGCAAAATTGCTGATGGAGTGAACTCATCAACTGGAAATGCCACCCGTGATACATTGCTGTGCAATTAA

Protein sequence

>MsG0380015356.01.T01

MALFLNASLPSTSKPHHHLLRSTPSSSTCSPTPISLFLGSNPKQTHQASQKLTLSFGESVSSAALVALLSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFIHTASSQFKGAKLLGASFFDADLTDFTDVPLREDQREYLCKIADGVNSSTGNATRDTLLCN*