AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038839.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038839.01.T01 MTR_7g063260 90.196 204 8 1 1 192 19 222 2.12e-134 377
MsG0780038839.01.T01 MTR_7g063270 86.765 204 14 2 1 192 19 221 2.03e-126 357
MsG0780038839.01.T01 MTR_7g063390 74.737 190 36 1 1 178 19 208 3.24e-101 293
MsG0780038839.01.T01 MTR_7g063360 75.263 190 35 1 1 178 19 208 1.07e-99 289
MsG0780038839.01.T01 MTR_7g063320 73.158 190 39 1 2 179 19 208 6.04e-95 277
MsG0780038839.01.T01 MTR_7g063330 68.557 194 49 1 1 182 18 211 6.24e-95 277
MsG0780038839.01.T01 MTR_7g063270 63.725 204 12 3 1 192 19 172 3.83e-79 235
MsG0780038839.01.T01 MTR_4g064883 55.612 196 75 1 1 184 17 212 2.14e-73 221
MsG0780038839.01.T01 MTR_4g064883 55.446 202 75 2 1 187 17 218 5.87e-73 221
MsG0780038839.01.T01 MTR_3g068070 58.947 190 66 1 2 179 19 208 1.52e-71 218
MsG0780038839.01.T01 MTR_3g068085 56.545 191 71 1 1 179 18 208 9.57e-69 211
MsG0780038839.01.T01 MTR_3g068065 57.592 191 69 1 1 179 20 210 1.60e-68 210
MsG0780038839.01.T01 MTR_4g064887 50.777 193 83 1 2 182 19 211 2.84e-67 205
MsG0780038839.01.T01 MTR_3g068155 53.403 191 77 1 1 179 22 212 2.19e-66 205
MsG0780038839.01.T01 MTR_4g064887 52.151 186 77 1 2 175 19 204 2.81e-66 204
MsG0780038839.01.T01 MTR_3g068175 52.105 190 79 1 2 179 21 210 2.19e-64 199
MsG0780038839.01.T01 MTR_3g068175 51.031 194 79 1 2 179 21 214 8.80e-64 198
MsG0780038839.01.T01 MTR_4g132850 31.937 191 113 5 3 180 12 198 7.20e-19 81.6
MsG0780038839.01.T01 MTR_7g080410 27.957 186 118 5 5 174 45 230 3.88e-16 75.1
MsG0780038839.01.T01 MTR_7g080410 27.957 186 118 5 5 174 45 230 4.97e-16 75.1
MsG0780038839.01.T01 MTR_4g131740 29.353 201 120 5 3 183 45 243 7.98e-13 65.9
MsG0780038839.01.T01 MTR_8g442750 26.455 189 118 3 3 171 19 206 1.19e-11 62.4
MsG0780038839.01.T01 MTR_8g044240 26.531 196 122 6 4 178 75 269 1.66e-11 62.4
MsG0780038839.01.T01 MTR_7g113650 29.592 196 115 7 3 178 45 237 1.97e-11 62.0
MsG0780038839.01.T01 MTR_6g041980 28.342 187 115 6 4 178 70 249 1.98e-11 61.6
MsG0780038839.01.T01 MTR_6g041980 28.571 168 102 5 4 159 70 231 3.66e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038839.01.T01 AT1G07440 53.234 201 80 2 2 190 16 214 1.45e-68 210
MsG0780038839.01.T01 AT2G29260 53.927 191 76 1 1 179 71 261 2.08e-66 206
MsG0780038839.01.T01 AT5G06060 52.083 192 80 1 2 181 13 204 1.08e-65 202
MsG0780038839.01.T01 AT2G29320 55.612 196 66 4 1 179 16 207 1.16e-65 201
MsG0780038839.01.T01 AT2G29320 56.545 191 62 4 1 174 16 202 2.79e-64 199
MsG0780038839.01.T01 AT2G29350 52.880 191 78 1 1 179 18 208 5.63e-64 197
MsG0780038839.01.T01 AT2G29290 50.769 195 84 1 1 183 10 204 6.35e-64 198
MsG0780038839.01.T01 AT2G29150 54.450 191 74 2 1 179 19 208 1.53e-63 197
MsG0780038839.01.T01 AT2G29350 52.000 200 81 2 1 188 18 214 2.06e-63 197
MsG0780038839.01.T01 AT2G29340 51.295 193 82 1 1 181 10 202 2.10e-63 195
MsG0780038839.01.T01 AT2G29340 51.295 193 82 1 1 181 10 202 2.10e-63 195
MsG0780038839.01.T01 AT2G29300 55.497 191 64 4 1 174 10 196 2.69e-63 196
MsG0780038839.01.T01 AT2G29300 55.497 191 64 4 1 174 10 196 1.19e-62 196
MsG0780038839.01.T01 AT2G29340 52.105 190 79 1 1 178 10 199 5.61e-62 193
MsG0780038839.01.T01 AT1G07450 52.381 189 77 2 1 177 11 198 8.82e-62 192
MsG0780038839.01.T01 AT2G29360 51.064 188 80 1 1 176 19 206 8.92e-62 193
MsG0780038839.01.T01 AT2G29340 52.105 190 79 1 1 178 10 199 1.84e-61 193
MsG0780038839.01.T01 AT2G29310 51.309 191 81 1 1 179 10 200 1.48e-60 187
MsG0780038839.01.T01 AT1G07440 58.170 153 64 0 2 154 16 168 2.57e-60 186
MsG0780038839.01.T01 AT2G29370 51.020 196 83 2 1 183 19 214 1.30e-59 187
MsG0780038839.01.T01 AT2G29310 51.579 190 80 1 1 178 10 199 3.21e-59 186
MsG0780038839.01.T01 AT2G30670 49.733 187 82 1 1 175 10 196 7.90e-59 185
MsG0780038839.01.T01 AT2G29330 51.872 187 78 1 1 175 10 196 1.96e-58 184
MsG0780038839.01.T01 AT2G29320 55.056 178 59 4 14 174 11 184 3.55e-57 181
MsG0780038839.01.T01 AT2G29290 48.619 181 81 1 15 183 7 187 6.16e-56 177
MsG0780038839.01.T01 AT2G29310 49.438 178 78 1 14 179 21 198 1.12e-52 167
MsG0780038839.01.T01 AT2G29310 49.718 177 77 1 14 178 21 197 1.58e-51 166
MsG0780038839.01.T01 AT2G29350 48.876 178 76 2 23 188 2 176 3.01e-51 165
MsG0780038839.01.T01 AT2G29170 64.286 84 30 0 1 84 19 102 1.52e-35 120
MsG0780038839.01.T01 AT4G05530 31.937 191 113 5 3 180 14 200 2.39e-20 85.9
MsG0780038839.01.T01 AT3G03980 30.808 198 113 4 3 176 19 216 1.07e-15 73.6
MsG0780038839.01.T01 AT1G54870 31.579 209 114 7 3 185 87 292 7.64e-15 71.6
MsG0780038839.01.T01 AT1G54870 31.579 209 114 7 3 185 89 294 8.53e-15 71.6
MsG0780038839.01.T01 AT3G12800 28.421 190 114 4 3 171 15 203 1.07e-14 71.2
MsG0780038839.01.T01 AT3G03330 29.032 186 115 4 5 173 48 233 1.58e-14 70.9
MsG0780038839.01.T01 AT3G05260 32.692 208 112 7 3 185 42 246 3.40e-14 69.7
MsG0780038839.01.T01 AT5G18210 30.256 195 114 5 3 176 13 206 2.45e-12 64.3
MsG0780038839.01.T01 AT5G04900 27.179 195 121 6 4 178 83 276 9.32e-12 63.2

Find 76 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTTCATCCATGAATT+TGG 0.149081 7:+53885181 MsG0780038839.01.T01:three_prime_UTR
GTTGAAGAGTTAGCTGAATT+TGG 0.164853 7:+53883165 MsG0780038839.01.T01:CDS
GTGTTTACTTCTTCCGTTGC+AGG 0.266264 7:+53883955 MsG0780038839.01.T01:CDS
ACCTGTCAAGACATCACTTT+TGG 0.268265 7:+53884193 MsG0780038839.01.T01:CDS
CTTCTAAAGGAATCTGGATA+TGG 0.270015 7:+53883925 MsG0780038839.01.T01:CDS
TGAACAACGCAAGAGATTAA+TGG 0.291743 7:+53883636 MsG0780038839.01.T01:CDS
CAAGAGCGTGTTGCTACTTT+AGG 0.294100 7:+53880797 MsG0780038839.01.T02:CDS
CTCCATCAATAGCTATAATT+TGG 0.330511 7:-53885080 None:intergenic
AGCAAGGGGTTTAATGTAAC+AGG 0.349868 7:+53883589 MsG0780038839.01.T01:CDS
GTCTTGTAACTACGCGTGTT+TGG 0.369780 7:+53885314 MsG0780038839.01.T01:three_prime_UTR
ACTGTTTCTTCTATCTTTCA+AGG 0.382915 7:+53883661 MsG0780038839.01.T01:CDS
AGAAGATATTAATAAATGTT+TGG 0.384019 7:+53883555 MsG0780038839.01.T01:CDS
AGTGTTGGAGCTGAGCATTC+AGG 0.386465 7:+53880865 MsG0780038839.01.T02:CDS
CACCCACTTCTAAAGGAATC+TGG 0.397044 7:+53883919 MsG0780038839.01.T01:CDS
GAAGATATAAATACTACAAT+AGG 0.407072 7:+53883856 MsG0780038839.01.T01:CDS
TTAATAAATGTTTGGAAGAG+TGG 0.412448 7:+53883563 MsG0780038839.01.T01:CDS
AAACAAAGTAAGCAGCTTCA+AGG 0.417186 7:+53882846 MsG0780038839.01.T01:five_prime_UTR
TCTGTTTATGCTGCCACTAA+AGG 0.430275 7:+53884000 MsG0780038839.01.T01:CDS
TGGATAAGCATTAATCTTTG+AGG 0.431746 7:-53880825 None:intergenic
GTAGTGTCTCAAACTCCTAC+AGG 0.432971 7:+53884980 MsG0780038839.01.T01:exon
GACCAAATTATAGCTATTGA+TGG 0.436804 7:+53885078 MsG0780038839.01.T01:three_prime_UTR
GAGCATCTGTTCATATATGC+AGG 0.436860 7:+53883187 MsG0780038839.01.T01:intron
GAAGAAGAGAAAGGAGAGAA+GGG 0.448088 7:-53885245 None:intergenic
CGTGCAAATGCTGTGGCACC+TGG 0.452656 7:+53884170 MsG0780038839.01.T01:CDS
ACAGGTGGAACCCGAGGCAT+TGG 0.454943 7:+53882907 MsG0780038839.01.T01:CDS
GAAGGGTATAAAGCTATAGC+TGG 0.456240 7:+53884957 MsG0780038839.01.T01:CDS
GCAGCATAAACAGATAAAAC+AGG 0.469195 7:-53883991 None:intergenic
GGATAAGCATTAATCTTTGA+GGG 0.473132 7:-53880824 None:intergenic
TTCATGGATGAAGAAGATAA+AGG 0.481597 7:-53885176 None:intergenic
AGTGATGTCTTGACAGGTCC+AGG 0.488001 7:-53884188 None:intergenic
GAGGAAACACATACCTTTAG+TGG 0.490764 7:-53884013 None:intergenic
GAAGAAGATAAAGGAGAGAG+AGG 0.498639 7:-53885167 None:intergenic
ACTTGCACACCCACTTCTAA+AGG 0.498917 7:+53883912 MsG0780038839.01.T01:CDS
CAGCCTCGACGGCTATGGGC+CGG 0.507708 7:-53883211 None:intergenic
CAGGTGGAACCCGAGGCATT+GGG 0.509603 7:+53882908 MsG0780038839.01.T01:CDS
TTCTAAAGGAATCTGGATAT+GGG 0.510619 7:+53883926 MsG0780038839.01.T01:CDS
CAAACTCCTACAGGGTCGTA+TGG 0.514226 7:+53884989 MsG0780038839.01.T01:three_prime_UTR
TCCAAAAGTGATGTCTTGAC+AGG 0.517557 7:-53884194 None:intergenic
GCACTCAAACGACAAAATCA+TGG 0.519879 7:-53885273 None:intergenic
TGAAGAAGAGAAAGGAGAGA+AGG 0.523717 7:-53885246 None:intergenic
GCTTATCCAGATGATGTTGT+CGG 0.525744 7:+53880839 MsG0780038839.01.T02:CDS
TTACAGGATTATGACTCTGA+AGG 0.526315 7:+53884939 MsG0780038839.01.T01:intron
ATGGATGATGAAGAAGAGAA+AGG 0.526731 7:-53885254 None:intergenic
TCTTCATAAAACATGAATGC+AGG 0.534956 7:-53885137 None:intergenic
AGGAAAATACCCAATGCCTC+GGG 0.536044 7:-53882917 None:intergenic
CCAGCTGCATCACACATCAC+TGG 0.536440 7:+53885056 MsG0780038839.01.T01:three_prime_UTR
AAGGAAAATACCCAATGCCT+CGG 0.541189 7:-53882918 None:intergenic
TATCCAGATTCCTTTAGAAG+TGG 0.549645 7:-53883922 None:intergenic
ATCCAGATTCCTTTAGAAGT+GGG 0.552090 7:-53883921 None:intergenic
CCAGTGATGTGTGATGCAGC+TGG 0.552228 7:-53885056 None:intergenic
GGAAAATTTGTGAGTGACGA+AGG 0.554110 7:+53880473 MsG0780038839.01.T02:CDS
TTGGAAGAGTGGAAAAGCAA+GGG 0.557030 7:+53883574 MsG0780038839.01.T01:CDS
TCTGTTCATATATGCAGGGC+CGG 0.557988 7:+53883192 MsG0780038839.01.T01:intron
AAGAAGAGAAAGGAGAGAAG+GGG 0.561426 7:-53885244 None:intergenic
AAACTCCTACAGGGTCGTAT+GGG 0.572646 7:+53884990 MsG0780038839.01.T01:three_prime_UTR
GCAGCTTCAAGGATAAAAGA+TGG 0.583066 7:+53882857 MsG0780038839.01.T01:five_prime_UTR
GATAAAAGATGGTCACTACA+TGG 0.585575 7:+53882868 MsG0780038839.01.T01:five_prime_UTR
TTTGGAAGAGTGGAAAAGCA+AGG 0.587401 7:+53883573 MsG0780038839.01.T01:CDS
TGGAAGAGTGGAAAAGCAAG+GGG 0.590781 7:+53883575 MsG0780038839.01.T01:CDS
TGATGTTGTCGGAAAAGTGT+TGG 0.592696 7:+53880850 MsG0780038839.01.T02:CDS
TACAGGATTATGACTCTGAA+GGG 0.596231 7:+53884940 MsG0780038839.01.T01:intron
TCAACATTAATAAATAAGCA+CGG 0.608916 7:+53880452 MsG0780038839.01.T02:CDS
GGTATGACTGCGTTAGTGAC+AGG 0.615872 7:+53882889 MsG0780038839.01.T01:exon
AAGGGTATAAAGCTATAGCT+GGG 0.615931 7:+53884958 MsG0780038839.01.T01:CDS
CAAATTATAGCTATTGATGG+AGG 0.619087 7:+53885081 MsG0780038839.01.T01:three_prime_UTR
CTTGGCATTAGAATGGGCAA+AGG 0.624391 7:+53884139 MsG0780038839.01.T01:intron
AGCATCTGTTCATATATGCA+GGG 0.634278 7:+53883188 MsG0780038839.01.T01:intron
TAGTGTCTCAAACTCCTACA+GGG 0.637919 7:+53884981 MsG0780038839.01.T01:exon
GGTGTGCAAGTTGACACAAA+TGG 0.648867 7:-53883900 None:intergenic
TAATATTCGTGCAAATGCTG+TGG 0.649939 7:+53884163 MsG0780038839.01.T01:CDS
TTAGTGACAGGTGGAACCCG+AGG 0.654837 7:+53882901 MsG0780038839.01.T01:CDS
TCTCTCCCATACGACCCTGT+AGG 0.658422 7:-53884995 None:intergenic
GTAGTTATCAACTAGAAACA+TGG 0.666186 7:+53882820 MsG0780038839.01.T01:five_prime_UTR
GGAGCTACGATTAAAACGAA+CGG 0.684482 7:+53880406 None:intergenic
ATGACTGCGTTAGTGACAGG+TGG 0.701550 7:+53882892 MsG0780038839.01.T01:CDS
ACGAACGGTATGTCGCAGTG+AGG 0.705894 7:+53880421 MsG0780038839.01.T02:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAATTAATAATATA+AGG - Chr7:53882398-53882417 None:intergenic 0.0%
!! AAATATAATTAATAATATAA+GGG - Chr7:53882397-53882416 None:intergenic 0.0%
!!! ATATTTTATAAAAAAAAATT+TGG - Chr7:53883273-53883292 None:intergenic 0.0%
!!! TATTTTATAAAAAAAAATTT+GGG - Chr7:53883272-53883291 None:intergenic 0.0%
!! AATTACAAAATCAATTTAAA+AGG - Chr7:53882993-53883012 None:intergenic 10.0%
!! ATGCAAAAAAAATTAAATTA+TGG - Chr7:53883468-53883487 None:intergenic 10.0%
!! TGCAAAAAAAATTAAATTAT+GGG - Chr7:53883467-53883486 None:intergenic 10.0%
!! TTAAAATAATAACTTTGAAT+TGG - Chr7:53882334-53882353 None:intergenic 10.0%
!! TTTATTAATAAATTACTTAC+AGG + Chr7:53882670-53882689 MsG0780038839.01.T02:intron 10.0%
!!! TATTTTTCTATTTTTAAACT+AGG + Chr7:53883133-53883152 MsG0780038839.01.T01:intron 10.0%
!!! TTTTTTTTTTACAAAAAGAA+AGG + Chr7:53884722-53884741 MsG0780038839.01.T01:intron 10.0%
!! AAAGAATTACAATTCATTAT+AGG + Chr7:53884865-53884884 MsG0780038839.01.T01:intron 15.0%
!! AGAAGATATTAATAAATGTT+TGG + Chr7:53883555-53883574 MsG0780038839.01.T01:CDS 15.0%
!! ATTAATAAAAAAGAAGGTTA+GGG - Chr7:53882659-53882678 None:intergenic 15.0%
!! TAAAAAATTATCCAAATTCA+TGG - Chr7:53885195-53885214 None:intergenic 15.0%
!! TATTAATAAAAAAGAAGGTT+AGG - Chr7:53882660-53882679 None:intergenic 15.0%
!!! AACTTCTAAAAATTGTTTAT+TGG + Chr7:53884515-53884534 MsG0780038839.01.T01:intron 15.0%
!!! ATATTTAAGACACTAAATAA+TGG + Chr7:53883289-53883308 MsG0780038839.01.T01:intron 15.0%
!!! ATTATCTATTATTTTCTTCA+TGG - Chr7:53883830-53883849 None:intergenic 15.0%
!!! CATAAACAATTTTTTTTTGA+GGG - Chr7:53884541-53884560 None:intergenic 15.0%
!!! TCAAATTCATTTTATTAAAG+AGG - Chr7:53884038-53884057 None:intergenic 15.0%
!!! TTTTGTTATCAATTTATCTT+AGG + Chr7:53884266-53884285 MsG0780038839.01.T01:intron 15.0%
!! AAAAAAATTACACAAGTCAT+TGG - Chr7:53883438-53883457 None:intergenic 20.0%
!! AAAATTAGAATTACACTTTG+TGG - Chr7:53883408-53883427 None:intergenic 20.0%
!! AAATTAGAATTACACTTTGT+GGG - Chr7:53883407-53883426 None:intergenic 20.0%
!! AATTTCTTAAAGCAATATGT+AGG - Chr7:53881432-53881451 None:intergenic 20.0%
!! ATATCTTATCCTATTAAAAC+AGG - Chr7:53880757-53880776 None:intergenic 20.0%
!! ATCAATTATTGTGTTAACAT+AGG - Chr7:53884092-53884111 None:intergenic 20.0%
!! ATGTATATAATGTTACCTTT+AGG + Chr7:53883783-53883802 MsG0780038839.01.T01:intron 20.0%
!! ATTTCTTAAAGCAATATGTA+GGG - Chr7:53881431-53881450 None:intergenic 20.0%
!! CCTCAAAAAAAAATTGTTTA+TGG + Chr7:53884539-53884558 MsG0780038839.01.T01:intron 20.0%
!! CTAATTTAATATGTTTGACA+TGG + Chr7:53883033-53883052 MsG0780038839.01.T01:intron 20.0%
!! GAAGATATAAATACTACAAT+AGG + Chr7:53883856-53883875 MsG0780038839.01.T01:CDS 20.0%
!! GATTACATTAACAAAATAAG+AGG - Chr7:53882629-53882648 None:intergenic 20.0%
!! TATAAATTGGATCAAGAATA+GGG - Chr7:53882116-53882135 None:intergenic 20.0%
!! TCAACATTAATAAATAAGCA+CGG + Chr7:53880452-53880471 MsG0780038839.01.T02:CDS 20.0%
!! TGTTCATGTAATAATCTTTA+GGG + Chr7:53884236-53884255 MsG0780038839.01.T01:intron 20.0%
!! TTCTAGTAATTAAACCAATA+AGG + Chr7:53881261-53881280 MsG0780038839.01.T02:intron 20.0%
!! TTGTTCATGTAATAATCTTT+AGG + Chr7:53884235-53884254 MsG0780038839.01.T01:intron 20.0%
!!! AACTTTTTGCAAGAAAAATT+TGG + Chr7:53881091-53881110 MsG0780038839.01.T02:intron 20.0%
!!! AATTCATTTTATTAAAGAGG+AGG - Chr7:53884035-53884054 None:intergenic 20.0%
!!! ACTTGTGTAATTTTTTTTTC+GGG + Chr7:53883441-53883460 MsG0780038839.01.T01:intron 20.0%
!!! CCATAAACAATTTTTTTTTG+AGG - Chr7:53884542-53884561 None:intergenic 20.0%
!!! GACTTGTGTAATTTTTTTTT+CGG + Chr7:53883440-53883459 MsG0780038839.01.T01:intron 20.0%
!!! TACATATTGCTTTAAGAAAT+TGG + Chr7:53881431-53881450 MsG0780038839.01.T02:intron 20.0%
!!! TGTTAATTACCTGTTTTAAT+AGG + Chr7:53880745-53880764 MsG0780038839.01.T02:intron 20.0%
! AAGAAAGGATAGTTATTGAA+AGG + Chr7:53884737-53884756 MsG0780038839.01.T01:intron 25.0%
! AAGTAGACATTAAACTAACA+AGG - Chr7:53881464-53881483 None:intergenic 25.0%
! ATAATCATATTCTGTGTTTC+TGG + Chr7:53881152-53881171 MsG0780038839.01.T02:intron 25.0%
! ATCATATTGTTGATGCAAAA+AGG + Chr7:53882070-53882089 MsG0780038839.01.T02:intron 25.0%
! ATCCCTTATAAAACTAAAAC+GGG + Chr7:53883486-53883505 MsG0780038839.01.T01:intron 25.0%
! CAATTATTCTTCAACATTCA+AGG - Chr7:53881994-53882013 None:intergenic 25.0%
! CATATATATAATGTGTTGTC+AGG - Chr7:53882747-53882766 None:intergenic 25.0%
! CATCCCTTATAAAACTAAAA+CGG + Chr7:53883485-53883504 MsG0780038839.01.T01:intron 25.0%
! CTATAAATTGGATCAAGAAT+AGG - Chr7:53882117-53882136 None:intergenic 25.0%
! GATTATTATGAAGAATACCT+TGG - Chr7:53881138-53881157 None:intergenic 25.0%
! TAACTCATGGATAAAAGAAA+TGG - Chr7:53881650-53881669 None:intergenic 25.0%
! TCATTGGGAAAAAAATAGAT+TGG + Chr7:53882142-53882161 MsG0780038839.01.T02:intron 25.0%
! TGAAGCTAAAAATACAAACA+GGG - Chr7:53881316-53881335 None:intergenic 25.0%
! TGTCATTAAGAGTTAAGATA+AGG - Chr7:53882940-53882959 None:intergenic 25.0%
! TTAATAAATGTTTGGAAGAG+TGG + Chr7:53883563-53883582 MsG0780038839.01.T01:CDS 25.0%
! TTATGAAATTGCATCTAGTT+GGG + Chr7:53880664-53880683 MsG0780038839.01.T02:intron 25.0%
! TTTATATACTGTACTGCATT+TGG + Chr7:53881516-53881535 MsG0780038839.01.T02:intron 25.0%
! TTTCATTTATTTGTGTGTGA+GGG + Chr7:53880532-53880551 MsG0780038839.01.T02:intron 25.0%
!! ATAGGTACAAATTTTGTATC+TGG + Chr7:53883874-53883893 MsG0780038839.01.T01:CDS 25.0%
!! ATCATGTTGTTGAATCTTTT+AGG + Chr7:53882491-53882510 MsG0780038839.01.T02:intron 25.0%
!! ATTGGTTTAATTACTAGAAC+TGG - Chr7:53881260-53881279 None:intergenic 25.0%
!! GTTAACACAATAATTGATTC+AGG + Chr7:53884094-53884113 MsG0780038839.01.T01:intron 25.0%
!! TCTATTATTTTCTTCATGGT+AGG - Chr7:53883826-53883845 None:intergenic 25.0%
!! TTCTTCAAATCCTCAAATTT+TGG - Chr7:53880982-53881001 None:intergenic 25.0%
!! TTTTGCATCAACAATATGAT+GGG - Chr7:53882070-53882089 None:intergenic 25.0%
!! TTTTTGCATCAACAATATGA+TGG - Chr7:53882071-53882090 None:intergenic 25.0%
!!! AATCTATTTTTTTCCCAATG+AGG - Chr7:53882143-53882162 None:intergenic 25.0%
!!! GTTGTTTTAACTTGTGTATT+AGG - Chr7:53882248-53882267 None:intergenic 25.0%
!!! TGAACTATTACTACTTTTAG+CGG - Chr7:53884631-53884650 None:intergenic 25.0%
!!! TTCTCTGAATTTGTTAATGT+TGG + Chr7:53880947-53880966 MsG0780038839.01.T02:intron 25.0%
AAAAAAACACTACTTAGCCA+CGG + Chr7:53881586-53881605 MsG0780038839.01.T02:intron 30.0%
AAAATTACACAAGTCATTGG+TGG - Chr7:53883435-53883454 None:intergenic 30.0%
AAATTACACAAGTCATTGGT+GGG - Chr7:53883434-53883453 None:intergenic 30.0%
AATAAATTACTTACAGGCTG+TGG + Chr7:53882676-53882695 MsG0780038839.01.T02:intron 30.0%
AGGTACAAGATACTACTTAA+TGG - Chr7:53882609-53882628 None:intergenic 30.0%
ATAAATTACTTACAGGCTGT+GGG + Chr7:53882677-53882696 MsG0780038839.01.T02:intron 30.0%
ATAGTAACAATACTACTGCT+TGG - Chr7:53881492-53881511 None:intergenic 30.0%
ATCTTCTTCATCCATGAATT+TGG + Chr7:53885181-53885200 MsG0780038839.01.T01:three_prime_UTR 30.0%
ATGCAAAAAGGAATGAGTAA+GGG + Chr7:53882082-53882101 MsG0780038839.01.T02:intron 30.0%
ATGGATAAAAGAAATGGAGA+AGG - Chr7:53881644-53881663 None:intergenic 30.0%
ATGTTTATACTGCTTCTTAC+AGG + Chr7:53884923-53884942 MsG0780038839.01.T01:intron 30.0%
ATGTTTGACATGGTAATTGA+TGG + Chr7:53883043-53883062 MsG0780038839.01.T01:intron 30.0%
ATTCTTCAACATTCAAGGTA+TGG - Chr7:53881989-53882008 None:intergenic 30.0%
CAAATTATAGCTATTGATGG+AGG + Chr7:53885081-53885100 MsG0780038839.01.T01:three_prime_UTR 30.0%
CTCCATCAATAGCTATAATT+TGG - Chr7:53885083-53885102 None:intergenic 30.0%
CTGAAGCTAAAAATACAAAC+AGG - Chr7:53881317-53881336 None:intergenic 30.0%
CTTATGAAATTGCATCTAGT+TGG + Chr7:53880663-53880682 MsG0780038839.01.T02:intron 30.0%
CTTTCATTTATTTGTGTGTG+AGG + Chr7:53880531-53880550 MsG0780038839.01.T02:intron 30.0%
GACCAAATTATAGCTATTGA+TGG + Chr7:53885078-53885097 MsG0780038839.01.T01:three_prime_UTR 30.0%
GGATAAGCATTAATCTTTGA+GGG - Chr7:53880827-53880846 None:intergenic 30.0%
GGTAATATTTGCTTCAAAGT+TGG - Chr7:53884382-53884401 None:intergenic 30.0%
GTAGTTATCAACTAGAAACA+TGG + Chr7:53882820-53882839 MsG0780038839.01.T01:five_prime_UTR 30.0%
TAGTAACAATACTACTGCTT+GGG - Chr7:53881491-53881510 None:intergenic 30.0%
TCCAAAAACATGTTCCTTAT+TGG - Chr7:53881278-53881297 None:intergenic 30.0%
TCCCTTATAAAACTAAAACG+GGG + Chr7:53883487-53883506 MsG0780038839.01.T01:intron 30.0%
TCTTCATAAAACATGAATGC+AGG - Chr7:53885140-53885159 None:intergenic 30.0%
TGGATAAGCATTAATCTTTG+AGG - Chr7:53880828-53880847 None:intergenic 30.0%
TTCATGGATGAAGAAGATAA+AGG - Chr7:53885179-53885198 None:intergenic 30.0%
! AATAGCTTTTAAACCTGCAA+CGG - Chr7:53883971-53883990 None:intergenic 30.0%
! ACCAATAAGGAACATGTTTT+TGG + Chr7:53881274-53881293 MsG0780038839.01.T02:intron 30.0%
! ACTGTTTCTTCTATCTTTCA+AGG + Chr7:53883661-53883680 MsG0780038839.01.T01:CDS 30.0%
! GCATTAAAAGCTTCTCTTTT+AGG - Chr7:53884349-53884368 None:intergenic 30.0%
! GGAAAAATGAAAGAAAGCAT+TGG - Chr7:53881222-53881241 None:intergenic 30.0%
! TTCATGTTGTTGAGTCTTTT+AGG + Chr7:53882563-53882582 MsG0780038839.01.T02:intron 30.0%
! TTCATTGGTAGTATTAGAGA+TGG + Chr7:53881937-53881956 MsG0780038839.01.T02:intron 30.0%
! TTCTAAAGGAATCTGGATAT+GGG + Chr7:53883926-53883945 MsG0780038839.01.T01:CDS 30.0%
! TTTTACATACAGTTTACCAC+AGG - Chr7:53881617-53881636 None:intergenic 30.0%
!! ATCACTTTTGGATTCTATCA+CGG + Chr7:53884205-53884224 MsG0780038839.01.T01:CDS 30.0%
!! TCATTTTTCCTTTACTTGAC+AGG + Chr7:53881232-53881251 MsG0780038839.01.T02:intron 30.0%
!! TTTAACTTGTGTATTAGGTG+CGG - Chr7:53882243-53882262 None:intergenic 30.0%
AAACAAAGTAAGCAGCTTCA+AGG + Chr7:53882846-53882865 MsG0780038839.01.T01:five_prime_UTR 35.0%
AAATTTGGGCCCCAAAAAAT+TGG - Chr7:53883258-53883277 None:intergenic 35.0%
AACTGGATATGAAGAGACTA+AGG + Chr7:53881028-53881047 MsG0780038839.01.T02:intron 35.0%
AAGAAGCAAGTACACACTTT+AGG + Chr7:53880997-53881016 MsG0780038839.01.T02:intron 35.0%
AATCGAAACATGATGTGCTT+AGG - Chr7:53882039-53882058 None:intergenic 35.0%
AATGTATATAGCCTGCTGTT+TGG + Chr7:53880710-53880729 MsG0780038839.01.T02:intron 35.0%
AGAAGCAAGTACACACTTTA+GGG + Chr7:53880998-53881017 MsG0780038839.01.T02:intron 35.0%
AGAATACCTTGGTTGAAACT+TGG - Chr7:53881127-53881146 None:intergenic 35.0%
AGCATCTGTTCATATATGCA+GGG + Chr7:53883188-53883207 MsG0780038839.01.T01:intron 35.0%
ATAGCATTTGGCGATAAGAT+TGG + Chr7:53882703-53882722 MsG0780038839.01.T02:intron 35.0%
ATGGATGATGAAGAAGAGAA+AGG - Chr7:53885257-53885276 None:intergenic 35.0%
ATGGTTAAGGAAGTCAAAAG+TGG + Chr7:53884313-53884332 MsG0780038839.01.T01:intron 35.0%
ATGTAACACTACCAGAAAAC+CGG - Chr7:53881865-53881884 None:intergenic 35.0%
ATTACGTGCACATATATGCA+GGG - Chr7:53883533-53883552 None:intergenic 35.0%
CAAGAACTTGGCATTAGAAT+GGG + Chr7:53884133-53884152 MsG0780038839.01.T01:intron 35.0%
CAATTTATAGCGTCCTCATT+GGG + Chr7:53882127-53882146 MsG0780038839.01.T02:intron 35.0%
GAAGAAAAGTCTCATGATGA+AGG + Chr7:53882217-53882236 MsG0780038839.01.T02:intron 35.0%
GAATTACCAAGTTTCAACCA+AGG + Chr7:53881118-53881137 MsG0780038839.01.T02:intron 35.0%
GATAAAAGATGGTCACTACA+TGG + Chr7:53882868-53882887 MsG0780038839.01.T01:five_prime_UTR 35.0%
GATGCAAAAAGGAATGAGTA+AGG + Chr7:53882081-53882100 MsG0780038839.01.T02:intron 35.0%
GCAGCATAAACAGATAAAAC+AGG - Chr7:53883994-53884013 None:intergenic 35.0%
GTGAATCAATTCCAAGAACT+TGG + Chr7:53884121-53884140 MsG0780038839.01.T01:intron 35.0%
GTTGAAGAGTTAGCTGAATT+TGG + Chr7:53883165-53883184 MsG0780038839.01.T01:CDS 35.0%
TAATATTCGTGCAAATGCTG+TGG + Chr7:53884163-53884182 MsG0780038839.01.T01:CDS 35.0%
TACAGGATTATGACTCTGAA+GGG + Chr7:53884940-53884959 MsG0780038839.01.T01:intron 35.0%
TGAACAACGCAAGAGATTAA+TGG + Chr7:53883636-53883655 MsG0780038839.01.T01:CDS 35.0%
TGATGCACGCTAAAGATTAA+TGG - Chr7:53884489-53884508 None:intergenic 35.0%
TGGTAACATTGTGTTAGCTA+CGG - Chr7:53881696-53881715 None:intergenic 35.0%
TTACAGGATTATGACTCTGA+AGG + Chr7:53884939-53884958 MsG0780038839.01.T01:intron 35.0%
! AAGGGTATAAAGCTATAGCT+GGG + Chr7:53884958-53884977 MsG0780038839.01.T01:CDS 35.0%
! ATCCAGATTCCTTTAGAAGT+GGG - Chr7:53883924-53883943 None:intergenic 35.0%
! CACAATAATTGATTCAGGAG+CGG + Chr7:53884099-53884118 MsG0780038839.01.T01:intron 35.0%
! CACTTTAGGGAAAAGTTAAC+TGG + Chr7:53881011-53881030 MsG0780038839.01.T02:intron 35.0%
! CTTCTAAAGGAATCTGGATA+TGG + Chr7:53883925-53883944 MsG0780038839.01.T01:CDS 35.0%
! GAATAGACGTGGCTAAATTT+TGG + Chr7:53881744-53881763 MsG0780038839.01.T02:intron 35.0%
! TATCCAGATTCCTTTAGAAG+TGG - Chr7:53883925-53883944 None:intergenic 35.0%
! TTGGTAGTATTAGAGATGGA+AGG + Chr7:53881941-53881960 MsG0780038839.01.T02:intron 35.0%
! TTGTTGTTCGCTTGATGAAT+TGG + Chr7:53881912-53881931 MsG0780038839.01.T02:intron 35.0%
! TTTTATCCATGAGTTAACCG+TGG + Chr7:53881654-53881673 MsG0780038839.01.T02:intron 35.0%
!! ACTATTACTACTTTTAGCGG+TGG - Chr7:53884628-53884647 None:intergenic 35.0%
!! CTTGATGAATTGGTCTTCAT+TGG + Chr7:53881922-53881941 MsG0780038839.01.T02:intron 35.0%
!!! GCCCCGTTTTAGTTTTATAA+GGG - Chr7:53883491-53883510 None:intergenic 35.0%
AACTGGTACCTGTCAAGTAA+AGG - Chr7:53881243-53881262 None:intergenic 40.0%
AAGAAGAGAAAGGAGAGAAG+GGG - Chr7:53885247-53885266 None:intergenic 40.0%
AAGGAAAATACCCAATGCCT+CGG - Chr7:53882921-53882940 None:intergenic 40.0%
ACTTCCTTAACCATTGTTCG+TGG - Chr7:53884307-53884326 None:intergenic 40.0%
AGAAAACCGGTGATTAACCA+CGG - Chr7:53881852-53881871 None:intergenic 40.0%
AGCAAGGGGTTTAATGTAAC+AGG + Chr7:53883589-53883608 MsG0780038839.01.T01:CDS 40.0%
ATCTCTTGAGTTCGTGTTGT+TGG + Chr7:53882429-53882448 MsG0780038839.01.T02:intron 40.0%
ATGGAAGGATAACAAGCTTG+AGG + Chr7:53881956-53881975 MsG0780038839.01.T02:intron 40.0%
ATGTGTTGTCAGGAATTGTG+TGG - Chr7:53882737-53882756 None:intergenic 40.0%
CATTACGTGCACATATATGC+AGG - Chr7:53883534-53883553 None:intergenic 40.0%
CCAAGAACTTGGCATTAGAA+TGG + Chr7:53884132-53884151 MsG0780038839.01.T01:intron 40.0%
CCAATGAGGACGCTATAAAT+TGG - Chr7:53882129-53882148 None:intergenic 40.0%
CCAATTTATAGCGTCCTCAT+TGG + Chr7:53882126-53882145 MsG0780038839.01.T02:intron 40.0%
CCATGAAATATCCAAACAGC+AGG - Chr7:53880724-53880743 None:intergenic 40.0%
CCATTCTAATGCCAAGTTCT+TGG - Chr7:53884135-53884154 None:intergenic 40.0%
CGTGTTCCAAAAACCTTAGA+GGG - Chr7:53880921-53880940 None:intergenic 40.0%
CTAAACTATCGTGTAACCGT+GGG - Chr7:53881817-53881836 None:intergenic 40.0%
GAAGAAGAGAAAGGAGAGAA+GGG - Chr7:53885248-53885267 None:intergenic 40.0%
GAAGAAGATAAAGGAGAGAG+AGG - Chr7:53885170-53885189 None:intergenic 40.0%
GAGCATCTGTTCATATATGC+AGG + Chr7:53883187-53883206 MsG0780038839.01.T01:intron 40.0%
GAGGAAACACATACCTTTAG+TGG - Chr7:53884016-53884035 None:intergenic 40.0%
GATCATGCTTACCAATGCTT+CGG - Chr7:53884467-53884486 None:intergenic 40.0%
GCACTCAAACGACAAAATCA+TGG - Chr7:53885276-53885295 None:intergenic 40.0%
GCAGCTTCAAGGATAAAAGA+TGG + Chr7:53882857-53882876 MsG0780038839.01.T01:five_prime_UTR 40.0%
GCTTATCCAGATGATGTTGT+CGG + Chr7:53880839-53880858 MsG0780038839.01.T02:CDS 40.0%
GGAAAATTTGTGAGTGACGA+AGG + Chr7:53880473-53880492 MsG0780038839.01.T02:CDS 40.0%
GGGCCTATGAATTGTTAAGA+CGG + Chr7:53883507-53883526 MsG0780038839.01.T01:intron 40.0%
TAACCAATGTACCGAAGCAT+TGG + Chr7:53884453-53884472 MsG0780038839.01.T01:intron 40.0%
TACACAAGCTCAAAGTCACT+TGG + Chr7:53881058-53881077 MsG0780038839.01.T02:intron 40.0%
TAGTGTCTCAAACTCCTACA+GGG + Chr7:53884981-53885000 MsG0780038839.01.T01:exon 40.0%
TCCAAAAGTGATGTCTTGAC+AGG - Chr7:53884197-53884216 None:intergenic 40.0%
TCGCAGCATTGTTTACCTAA+AGG - Chr7:53883801-53883820 None:intergenic 40.0%
TCTATTCCATGTGTTAGCCA+CGG - Chr7:53881731-53881750 None:intergenic 40.0%
TCTGTTTATGCTGCCACTAA+AGG + Chr7:53884000-53884019 MsG0780038839.01.T01:CDS 40.0%
TGAAGAAGAGAAAGGAGAGA+AGG - Chr7:53885249-53885268 None:intergenic 40.0%
TGGAAGGATAACAAGCTTGA+GGG + Chr7:53881957-53881976 MsG0780038839.01.T02:intron 40.0%
TGGATCAAGAATAGGGTGAT+GGG - Chr7:53882109-53882128 None:intergenic 40.0%
TTACCAATGCTTCGGTACAT+TGG - Chr7:53884459-53884478 None:intergenic 40.0%
TTGGAAGAGTGGAAAAGCAA+GGG + Chr7:53883574-53883593 MsG0780038839.01.T01:CDS 40.0%
TTGGATCAAGAATAGGGTGA+TGG - Chr7:53882110-53882129 None:intergenic 40.0%
TTTGGAAGAGTGGAAAAGCA+AGG + Chr7:53883573-53883592 MsG0780038839.01.T01:CDS 40.0%
! ACCTGTCAAGACATCACTTT+TGG + Chr7:53884193-53884212 MsG0780038839.01.T01:CDS 40.0%
! ACTTTTCCGACAACATCATC+TGG - Chr7:53880848-53880867 None:intergenic 40.0%
! CCTGCTGTTTGGATATTTCA+TGG + Chr7:53880721-53880740 MsG0780038839.01.T02:intron 40.0%
! CTGCCACAAGTGTTTAGAAT+GGG + Chr7:53882178-53882197 MsG0780038839.01.T02:intron 40.0%
! GAAGGGTATAAAGCTATAGC+TGG + Chr7:53884957-53884976 MsG0780038839.01.T01:CDS 40.0%
! GGTAGCTTTTGGTGAATGAA+AGG + Chr7:53883367-53883386 MsG0780038839.01.T01:intron 40.0%
! TGATGTTGTCGGAAAAGTGT+TGG + Chr7:53880850-53880869 MsG0780038839.01.T02:CDS 40.0%
! TTTTGACCGTGGTTAATCAC+CGG + Chr7:53881843-53881862 MsG0780038839.01.T02:intron 40.0%
!! CATCAACAATATGATGGGCA+TGG - Chr7:53882065-53882084 None:intergenic 40.0%
!! GTAGCTCTAGCCAAAATTTG+AGG + Chr7:53880969-53880988 MsG0780038839.01.T02:intron 40.0%
!!! GGCCCCGTTTTAGTTTTATA+AGG - Chr7:53883492-53883511 None:intergenic 40.0%
!!! TGTTTGCCCTCTAAGGTTTT+TGG + Chr7:53880912-53880931 MsG0780038839.01.T02:intron 40.0%
AAACTCCTACAGGGTCGTAT+GGG + Chr7:53884990-53885009 MsG0780038839.01.T01:three_prime_UTR 45.0%
AACACTACTTAGCCACGGTT+AGG + Chr7:53881591-53881610 MsG0780038839.01.T02:intron 45.0%
AATTAGCCGTGGCTAACACA+TGG + Chr7:53881722-53881741 MsG0780038839.01.T02:intron 45.0%
ACTTGCACACCCACTTCTAA+AGG + Chr7:53883912-53883931 MsG0780038839.01.T01:CDS 45.0%
AGCACCACGAACAATGGTTA+AGG + Chr7:53884300-53884319 MsG0780038839.01.T01:intron 45.0%
AGGAAAATACCCAATGCCTC+GGG - Chr7:53882920-53882939 None:intergenic 45.0%
ATCTACTAAGCGTGCTTCTG+TGG + Chr7:53883341-53883360 MsG0780038839.01.T01:intron 45.0%
ATTAACCACGGTCAAAAGCG+TGG - Chr7:53881840-53881859 None:intergenic 45.0%
CTTGGCATTAGAATGGGCAA+AGG + Chr7:53884139-53884158 MsG0780038839.01.T01:intron 45.0%
GATTTGAGCTCTTCTAGCCA+CGG - Chr7:53881674-53881693 None:intergenic 45.0%
GCACCCATTCTAAACACTTG+TGG - Chr7:53882184-53882203 None:intergenic 45.0%
GCGTGTTCCAAAAACCTTAG+AGG - Chr7:53880922-53880941 None:intergenic 45.0%
GCTAAACTATCGTGTAACCG+TGG - Chr7:53881818-53881837 None:intergenic 45.0%
GCTAACACATGGAATAGACG+TGG + Chr7:53881733-53881752 MsG0780038839.01.T02:intron 45.0%
GCTGCCACAAGTGTTTAGAA+TGG + Chr7:53882177-53882196 MsG0780038839.01.T02:intron 45.0%
GGGCCGTCTTAACAATTCAT+AGG - Chr7:53883513-53883532 None:intergenic 45.0%
GGTAACGAATGTTACCACGT+AGG - Chr7:53881796-53881815 None:intergenic 45.0%
GTAGTGTCTCAAACTCCTAC+AGG + Chr7:53884980-53884999 MsG0780038839.01.T01:exon 45.0%
GTCTTGTAACTACGCGTGTT+TGG + Chr7:53885314-53885333 MsG0780038839.01.T01:three_prime_UTR 45.0%
GTGGTAACATTCGTTACCCA+CGG + Chr7:53881798-53881817 MsG0780038839.01.T02:intron 45.0%
GTGTTTACTTCTTCCGTTGC+AGG + Chr7:53883955-53883974 MsG0780038839.01.T01:CDS 45.0%
TACCACGACAAAATTAGCCG+TGG + Chr7:53881711-53881730 MsG0780038839.01.T02:intron 45.0%
TCTGTTCATATATGCAGGGC+CGG + Chr7:53883192-53883211 MsG0780038839.01.T01:intron 45.0%
TGGAAGAGTGGAAAAGCAAG+GGG + Chr7:53883575-53883594 MsG0780038839.01.T01:CDS 45.0%
TGTGCTTAGGCAATGAGAAC+TGG - Chr7:53882026-53882045 None:intergenic 45.0%
TTAACCATTGTTCGTGGTGC+TGG - Chr7:53884301-53884320 None:intergenic 45.0%
TTCTAAACACTTGTGGCAGC+AGG - Chr7:53882177-53882196 None:intergenic 45.0%
TTCTAGCCACGGTTAACTCA+TGG - Chr7:53881663-53881682 None:intergenic 45.0%
TTTGGGCCCCAAAAAATTGG+AGG - Chr7:53883255-53883274 None:intergenic 45.0%
! CACCCACTTCTAAAGGAATC+TGG + Chr7:53883919-53883938 MsG0780038839.01.T01:CDS 45.0%
! GGTGTGCAAGTTGACACAAA+TGG - Chr7:53883903-53883922 None:intergenic 45.0%
!! CAACAATATGATGGGCATGG+AGG - Chr7:53882062-53882081 None:intergenic 45.0%
!! CAAGAGCGTGTTGCTACTTT+AGG + Chr7:53880797-53880816 MsG0780038839.01.T02:CDS 45.0%
!!! ACTACGCGTGTTTGGTTTTC+TGG + Chr7:53885322-53885341 MsG0780038839.01.T01:three_prime_UTR 45.0%
!!! GTGGTTAATCACCGGTTTTC+TGG + Chr7:53881851-53881870 MsG0780038839.01.T02:intron 45.0%
!! TAATTTATTAATAAAAAAGA+AGG - Chr7:53882665-53882684 None:intergenic 5.0%
!!! ATAAATTTGTTTTTTTTTTA+AGG - Chr7:53883094-53883113 None:intergenic 5.0%
AGTGATGTCTTGACAGGTCC+AGG - Chr7:53884191-53884210 None:intergenic 50.0%
ATGACTGCGTTAGTGACAGG+TGG + Chr7:53882892-53882911 MsG0780038839.01.T01:CDS 50.0%
CAAACTCCTACAGGGTCGTA+TGG + Chr7:53884989-53885008 MsG0780038839.01.T01:three_prime_UTR 50.0%
CTAACCAGCACCACGAACAA+TGG + Chr7:53884294-53884313 MsG0780038839.01.T01:intron 50.0%
GGTATGACTGCGTTAGTGAC+AGG + Chr7:53882889-53882908 MsG0780038839.01.T01:exon 50.0%
TAAACACTTGTGGCAGCAGG+CGG - Chr7:53882174-53882193 None:intergenic 50.0%
! AGCCACGGCTAATTTTGTCG+TGG - Chr7:53881716-53881735 None:intergenic 50.0%
! AGTGTTGGAGCTGAGCATTC+AGG + Chr7:53880865-53880884 MsG0780038839.01.T02:CDS 50.0%
! GTGTTGGTGTTTGCCCTCTA+AGG + Chr7:53880905-53880924 MsG0780038839.01.T02:intron 50.0%
! TTTAGCCACGCTTTTGACCG+TGG + Chr7:53881832-53881851 MsG0780038839.01.T02:intron 50.0%
!!! ACCGGGCCTCCAATTTTTTG+GGG + Chr7:53883246-53883265 MsG0780038839.01.T01:intron 50.0%
!!! CACCGGGCCTCCAATTTTTT+GGG + Chr7:53883245-53883264 MsG0780038839.01.T01:intron 50.0%
ACGAACGGTATGTCGCAGTG+AGG + Chr7:53880421-53880440 MsG0780038839.01.T02:CDS 55.0%
CCAGCTGCATCACACATCAC+TGG + Chr7:53885056-53885075 MsG0780038839.01.T01:three_prime_UTR 55.0%
CCAGTGATGTGTGATGCAGC+TGG - Chr7:53885059-53885078 None:intergenic 55.0%
GCCCCAAAAAATTGGAGGCC+CGG - Chr7:53883250-53883269 None:intergenic 55.0%
GGCTGTGGGCACATAGCATT+TGG + Chr7:53882691-53882710 MsG0780038839.01.T02:intron 55.0%
GTTTACCACAGGCCTAACCG+TGG - Chr7:53881606-53881625 None:intergenic 55.0%
TCAGGTCGAGTGCGTGGATT+AGG + Chr7:53880883-53880902 MsG0780038839.01.T02:intron 55.0%
TCTCTCCCATACGACCCTGT+AGG - Chr7:53884998-53885017 None:intergenic 55.0%
TTAGTGACAGGTGGAACCCG+AGG + Chr7:53882901-53882920 MsG0780038839.01.T01:CDS 55.0%
! TTCTGTGGCGCGGTAGCTTT+TGG + Chr7:53883356-53883375 MsG0780038839.01.T01:intron 55.0%
!! CGAGTGCGTGGATTAGGTGT+TGG + Chr7:53880889-53880908 MsG0780038839.01.T02:intron 55.0%
!!! GCACCGGGCCTCCAATTTTT+TGG + Chr7:53883244-53883263 MsG0780038839.01.T01:intron 55.0%
ACAGGTGGAACCCGAGGCAT+TGG + Chr7:53882907-53882926 MsG0780038839.01.T01:CDS 60.0%
CGTGCAAATGCTGTGGCACC+TGG + Chr7:53884170-53884189 MsG0780038839.01.T01:CDS 60.0%
CTAAGCGTGCTTCTGTGGCG+CGG + Chr7:53883346-53883365 MsG0780038839.01.T01:intron 60.0%
CTTAGCCACGGTTAGGCCTG+TGG + Chr7:53881598-53881617 MsG0780038839.01.T02:intron 60.0%
GAGCATTCAGGTCGAGTGCG+TGG + Chr7:53880877-53880896 MsG0780038839.01.T02:intron 60.0%
GGCCACAACCGTGGCAAACA+AGG - Chr7:53881775-53881794 None:intergenic 60.0%
TACCACGTAGGCCACAACCG+TGG - Chr7:53881784-53881803 None:intergenic 60.0%
! CAGGTGGAACCCGAGGCATT+GGG + Chr7:53882908-53882927 MsG0780038839.01.T01:CDS 60.0%
!! CGCCTTGTTTGCCACGGTTG+TGG + Chr7:53881770-53881789 MsG0780038839.01.T02:intron 60.0%
!! TGGCGACGCCTTGTTTGCCA+CGG + Chr7:53881764-53881783 MsG0780038839.01.T02:intron 60.0%
AGCCCAGCCTCGACGGCTAT+GGG - Chr7:53883218-53883237 None:intergenic 65.0%
AGGCTGGGCTACTACGGCAC+CGG + Chr7:53883228-53883247 MsG0780038839.01.T01:intron 65.0%
CCGTAGTAGCCCAGCCTCGA+CGG - Chr7:53883225-53883244 None:intergenic 65.0%
CCGTCGAGGCTGGGCTACTA+CGG + Chr7:53883222-53883241 MsG0780038839.01.T01:intron 65.0%
TAGCCCAGCCTCGACGGCTA+TGG - Chr7:53883219-53883238 None:intergenic 65.0%
TGCCACGGTTGTGGCCTACG+TGG + Chr7:53881779-53881798 MsG0780038839.01.T02:intron 65.0%
CAGCCTCGACGGCTATGGGC+CGG - Chr7:53883214-53883233 None:intergenic 70.0%
GGCCCATAGCCGTCGAGGCT+GGG + Chr7:53883213-53883232 MsG0780038839.01.T01:intron 70.0%
GGCTGGGCTACTACGGCACC+GGG + Chr7:53883229-53883248 MsG0780038839.01.T01:intron 70.0%
CGGCCCATAGCCGTCGAGGC+TGG + Chr7:53883212-53883231 MsG0780038839.01.T01:intron 75.0%
! GGGCCGGCCCATAGCCGTCG+AGG + Chr7:53883208-53883227 MsG0780038839.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 53880407 53885341 53880407 ID=MsG0780038839.01;Name=MsG0780038839.01
Chr7 mRNA 53882783 53885341 53882783 ID=MsG0780038839.01.T01;Parent=MsG0780038839.01;Name=MsG0780038839.01.T01;_AED=0.46;_eAED=0.46;_QI=109|0.8|0.83|1|0.2|0.33|6|358|192
Chr7 exon 53882783 53882929 53882783 ID=MsG0780038839.01.T01:exon:6004;Parent=MsG0780038839.01.T01
Chr7 exon 53883155 53883200 53883155 ID=MsG0780038839.01.T01:exon:6005;Parent=MsG0780038839.01.T01
Chr7 exon 53883538 53883699 53883538 ID=MsG0780038839.01.T01:exon:6006;Parent=MsG0780038839.01.T01
Chr7 exon 53883805 53884021 53883805 ID=MsG0780038839.01.T01:exon:6007;Parent=MsG0780038839.01.T01
Chr7 exon 53884150 53884226 53884150 ID=MsG0780038839.01.T01:exon:6008;Parent=MsG0780038839.01.T01
Chr7 exon 53884945 53885341 53884945 ID=MsG0780038839.01.T01:exon:6009;Parent=MsG0780038839.01.T01
Chr7 five_prime_UTR 53882783 53882891 53882783 ID=MsG0780038839.01.T01:five_prime_utr;Parent=MsG0780038839.01.T01
Chr7 CDS 53882892 53882929 53882892 ID=MsG0780038839.01.T01:cds;Parent=MsG0780038839.01.T01
Chr7 CDS 53883155 53883200 53883155 ID=MsG0780038839.01.T01:cds;Parent=MsG0780038839.01.T01
Chr7 CDS 53883538 53883699 53883538 ID=MsG0780038839.01.T01:cds;Parent=MsG0780038839.01.T01
Chr7 CDS 53883805 53884021 53883805 ID=MsG0780038839.01.T01:cds;Parent=MsG0780038839.01.T01
Chr7 CDS 53884150 53884226 53884150 ID=MsG0780038839.01.T01:cds;Parent=MsG0780038839.01.T01
Chr7 CDS 53884945 53884983 53884945 ID=MsG0780038839.01.T01:cds;Parent=MsG0780038839.01.T01
Chr7 three_prime_UTR 53884984 53885341 53884984 ID=MsG0780038839.01.T01:three_prime_utr;Parent=MsG0780038839.01.T01
Chr7 mRNA 53880407 53883221 53880407 ID=MsG0780038839.01.T02;Parent=MsG0780038839.01;Name=MsG0780038839.01.T02;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|0|0|3|0|97
Chr7 exon 53880407 53880508 53880407 ID=MsG0780038839.01.T02:exon:6010;Parent=MsG0780038839.01.T02
Chr7 exon 53880767 53880891 53880767 ID=MsG0780038839.01.T02:exon:6011;Parent=MsG0780038839.01.T02
Chr7 exon 53883155 53883221 53883155 ID=MsG0780038839.01.T02:exon:6012;Parent=MsG0780038839.01.T02
Chr7 CDS 53880407 53880508 53880407 ID=MsG0780038839.01.T02:cds;Parent=MsG0780038839.01.T02
Chr7 CDS 53880767 53880891 53880767 ID=MsG0780038839.01.T02:cds;Parent=MsG0780038839.01.T02
Chr7 CDS 53883155 53883221 53883155 ID=MsG0780038839.01.T02:cds;Parent=MsG0780038839.01.T02
Gene Sequence

>MsG0780038839.01.T01

ATGACTGCGTTAGTGACAGGTGGAACCCGAGGCATTGGGTACGCAATTGTTGAAGAGTTAGCTGAATTTGGAGCATCTGTTCATATATGTGCACGTAATGAAGAAGATATTAATAAATGTTTGGAAGAGTGGAAAAGCAAGGGGTTTAATGTAACAGGATCAGTATGTGATATACTATTTCATGAACAACGCAAGAGATTAATGGAAACTGTTTCTTCTATCTTTCAAGGAAAGCTCAATATTCTAGTAAACAATGCTGCGAAACCTACCATGAAGAAAATAATAGATAATACTGATGAAGATATAAATACTACAATAGGTACAAATTTTGTATCTGGTTACCATTTGTGTCAACTTGCACACCCACTTCTAAAGGAATCTGGATATGGGAGCATAGTGTTTACTTCTTCCGTTGCAGGTTTAAAAGCTATTCCTGTTTTATCTGTTTATGCTGCCACTAAAGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTGGCACCTGGACCTGTCAAGACATCACTTTTGGATTCTATCACGGATTATGACTCTGAAGGGTATAAAGCTATAGCTGGGTAG

>MsG0780038839.01.T02

GAGCTACGATTAAAACGAACGGTATGTCGCAGTGAGGTTATTTTGTCAACATTAATAAATAAGCACGGAAAATTTGTGAGTGACGAAGGAAAAGTTATTGTTGATAAGATATCAGAGAATTTGCTCAAAGATCAAGAGCGTGTTGCTACTTTAGGTGTTCCCTCAAAGATTAATGCTTATCCAGATGATGTTGTCGGAAAAGTGTTGGAGCTGAGCATTCAGGTCGAGTACGCAATTGTTGAAGAGTTAGCTGAATTTGGAGCATCTGTTCATATATGCAGGGCCGGCCCATAG

Protein sequence

>MsG0780038839.01.T01

MTALVTGGTRGIGYAIVEELAEFGASVHICARNEEDINKCLEEWKSKGFNVTGSVCDILFHEQRKRLMETVSSIFQGKLNILVNNAAKPTMKKIIDNTDEDINTTIGTNFVSGYHLCQLAHPLLKESGYGSIVFTSSVAGLKAIPVLSVYAATKEWAKDNIRANAVAPGPVKTSLLDSITDYDSEGYKAIAG*

>MsG0780038839.01.T02

ELRLKRTVCRSEVILSTLINKHGKFVSDEGKVIVDKISENLLKDQERVATLGVPSKINAYPDDVVGKVLELSIQVEYAIVEELAEFGASVHICRAGP*