AlfalfaGEDB | MsG0380015787.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015787.01

KEGG: -
GO: -
PFAM: PF07001

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015787.01.T01	XP_003601230.2	96.529	1527	38	2	1	1518	5	1525	0	3021

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015787.01.T01	Q9SB63	34.571	1562	769	50	7	1503	9	1382	0	598

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015787.01.T01	G7J4W3	96.529	1527	38	2	1	1518	5	1525	0.0	3021

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048602.01	MsG0380015787.01	0.863392	2.572919e-64	7.786869e-61
MsG0080048765.01	MsG0380015787.01	0.820128	8.077663e-53	6.337462e-50
MsG0180000100.01	MsG0380015787.01	0.825468	4.610843e-54	4.206036e-51
MsG0180000101.01	MsG0380015787.01	0.847829	9.029093e-60	1.624957e-56
MsG0180000475.01	MsG0380015787.01	0.821929	3.108504e-53	2.564293e-50
MsG0180000494.01	MsG0380015787.01	0.858901	5.993899e-63	1.553957e-59
MsG0180000555.01	MsG0380015787.01	0.872286	3.573773e-67	1.486936e-63
MsG0180000585.01	MsG0380015787.01	0.806270	8.923176e-50	4.822809e-47
MsG0180000648.01	MsG0380015787.01	0.823709	1.197082e-53	1.038813e-50
MsG0180000741.01	MsG0380015787.01	0.858996	5.611313e-63	1.459645e-59

Showing 1 to 10 of 222 entries

Previous1 2 3 4 5…23Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380015787.01.T01	MTR_3g077440	96.529	1527	38	2	1	1518	5	1525	3021
MsG0380015787.01.T01	MTR_3g077440	95.940	1527	38	3	1	1518	5	1516	2994
MsG0380015787.01.T01	MTR_3g077440	95.743	1527	38	3	1	1518	5	1513	2987
MsG0380015787.01.T01	MTR_3g077440	95.154	1527	38	4	1	1518	5	1504	2959
MsG0380015787.01.T01	MTR_3g077450	65.307	1594	395	26	5	1517	14	1530	1828
MsG0380015787.01.T01	MTR_3g077450	64.205	1598	390	27	1	1517	1	1497	1785
MsG0380015787.01.T01	MTR_3g077450	62.851	1389	361	24	208	1517	1	1313	1536

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015787.01.T01	AT4G24680	34.596	1558	766	50	11	1503	14	1383	0.0	599
MsG0380015787.01.T01	AT4G24680	34.571	1562	769	50	7	1503	9	1382	0.0	598
MsG0380015787.01.T01	AT4G24680	34.571	1562	769	50	7	1503	9	1382	0.0	598
MsG0380015787.01.T01	AT4G24680	34.224	1572	767	51	11	1503	14	1397	0.0	591
MsG0380015787.01.T01	AT4G24680	33.867	1562	755	50	7	1503	9	1357	3.59e-180	576

Showing 1 to 5 of 5 entries

Previous1Next

Find 456 sgRNAs with CRISPR-Local

Find 752 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGTTGCAAAAGAAA+TGG	0.442456	3:+75030120	MsG0380015787.01.T01:CDS
AAAACTCAGTGGCATGGAAT+GGG	0.430326	3:+75024012	MsG0380015787.01.T01:CDS
AAAAGACGTCGAATTAGATC+AGG	0.455276	3:+75029808	MsG0380015787.01.T01:CDS
AAAAGTTGAGAATCACACAG+TGG	0.798638	3:+75029544	MsG0380015787.01.T01:CDS
AAAATAGTAATTTGATGGCA+TGG	0.491290	3:+75031654	MsG0380015787.01.T01:three_prime_UTR
AAACAACACAACAACTGGGA+TGG	0.533283	3:+75028012	MsG0380015787.01.T01:CDS
AAACAACTGCGCAAGATGAG+TGG	0.600667	3:+75031109	MsG0380015787.01.T01:CDS
AAACAAGCGCACACAAGCCG+TGG	0.581233	3:+75029133	MsG0380015787.01.T01:CDS
AAACGAGCCAACAAACTGCG+AGG	0.733058	3:+75028038	MsG0380015787.01.T01:CDS
AAACTCAGTGGCATGGAATG+GGG	0.637336	3:+75024013	MsG0380015787.01.T01:CDS

Showing 1 to 10 of 456 entries

Previous1 2 3 4 5…46Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATAAGAGGGCTGAAA+TGG	+	Chr3:75030084-75030103	MsG0380015787.01.T01:CDS	30.0%
AAAACACTAGATAACTGAGA+CGG	-	Chr3:75023472-75023491	None:intergenic	30.0%
AAAACCTGTTGCAAAAGAAA+TGG	+	Chr3:75030120-75030139	MsG0380015787.01.T01:CDS	30.0%
AAATATGAAAAGATTACGGG+TGG	+	Chr3:75026829-75026848	MsG0380015787.01.T01:intron	30.0%
AAGTGAGAAAAGTAAAACTG+AGG	+	Chr3:75030021-75030040	MsG0380015787.01.T01:CDS	30.0%
AATAATAAATAACAGGGCAC+CGG	-	Chr3:75031615-75031634	None:intergenic	30.0%
AATCTAAAAATGGAGATAGC+AGG	+	Chr3:75030290-75030309	MsG0380015787.01.T01:CDS	30.0%
AATGATACATATCTTGTCAG+TGG	+	Chr3:75024231-75024250	MsG0380015787.01.T01:intron	30.0%
ACATTATATGAATATAGCGG+TGG	-	Chr3:75024458-75024477	None:intergenic	30.0%
ACATTTCCAAACAATCACAA+AGG	-	Chr3:75025909-75025928	None:intergenic	30.0%

Showing 1 to 10 of 752 entries

Previous1 2 3 4 5…76Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	75023338	75031821	75023338	ID=MsG0380015787.01;Name=MsG0380015787.01
Chr3	mRNA	75023338	75031821	75023338	ID=MsG0380015787.01.T01;Parent=MsG0380015787.01;Name=MsG0380015787.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|1\|0.87\|1\|1\|1\|8\|480\|1518
Chr3	exon	75023338	75023441	75023338	ID=MsG0380015787.01.T01:exon:1001;Parent=MsG0380015787.01.T01
Chr3	exon	75023535	75023579	75023535	ID=MsG0380015787.01.T01:exon:1002;Parent=MsG0380015787.01.T01
Chr3	exon	75023680	75024055	75023680	ID=MsG0380015787.01.T01:exon:1003;Parent=MsG0380015787.01.T01
Chr3	exon	75026270	75026372	75026270	ID=MsG0380015787.01.T01:exon:1004;Parent=MsG0380015787.01.T01
Chr3	exon	75027100	75027171	75027100	ID=MsG0380015787.01.T01:exon:1005;Parent=MsG0380015787.01.T01
Chr3	exon	75027329	75028601	75027329	ID=MsG0380015787.01.T01:exon:1006;Parent=MsG0380015787.01.T01
Chr3	exon	75028681	75028942	75028681	ID=MsG0380015787.01.T01:exon:1007;Parent=MsG0380015787.01.T01
Chr3	exon	75029020	75031821	75029020	ID=MsG0380015787.01.T01:exon:1008;Parent=MsG0380015787.01.T01
Chr3	CDS	75023338	75023441	75023338	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75023535	75023579	75023535	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75023680	75024055	75023680	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75026270	75026372	75026270	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75027100	75027171	75027100	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75027329	75028601	75027329	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75028681	75028942	75028681	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	CDS	75029020	75031341	75029020	ID=MsG0380015787.01.T01:cds;Parent=MsG0380015787.01.T01
Chr3	three_prime_UTR	75031342	75031821	75031342	ID=MsG0380015787.01.T01:three_prime_utr;Parent=MsG0380015787.01.T01

Gene Sequence

>MsG0380015787.01.T01

ATGATGATAATACTGCGCAGGTTGACCTCTTCCACCAGAAGAGGTGGCATGACCGTGTTAGGGAAAGTTGTAGTTCCAAAACCTATAAACTTACCCAGTCAGAGGTTAGAAAATCATGGTCTGGACCCAAATGTGGAGATAGTGCCCAAGGGTACCCTTGGCTGGGGCAGTAAATCATCATCTTCTGCATCAAATGCATGGGGTTCTTCTTTGTCTCCCAATGCCAATGCTGGGGCTAGTTCACCCAGTCATCTCAGTACCCGTCCATCATCTGGTGGAAGTGGCACGCGACCTTCAACTTCTGGTAGTGATATGGCTTCTGAACTAACTACTACTAGTGCATGGGGTTCAAGCTCTCGGCCTTCATCAGCATCGGGGCCGCCAACATCAAATCAGACTTCACAAACATCATTGCGTCCTCGCAGTGCTGAAACAAGACTTGGTAGCTCACACTTATCTCGATTTGCTGAACACGTGGGTGAAAACTCAGTGGCATGGAATGGGGCAAGAACTACAGAGACACTGGGAATTACACAACGCAAGAATGATGATTTTTCTTTGAGCACTGGAGATTTTCCTACTCTTGGTTCTGAGAAGGACAAATCTGTACATGATGTTGAGTTGCAAGATCACGGTTCTCATATTCGACCAGACTCTTCTTCTGGACTTCGGAGAGAGAAAAATGAGACCTCAACTGTCGATGATGTTCCTGTTCATGATAATGCAAAGGGTGAAGCTATAAATTCTTGGAGAAGAGACTATCAAGCTTTTAATGAGGGTGGTATGAGGCCTGGAATAGAGAAATGGCCAGGGAATCTCCAGACTTATCATAATATTCCTCCTCAACACTTTGATGTTTGGCGTGGTGCTCCAGTAAATAACCATCAACGTGATATTTGGTTCAGAGGTCCACCTAATGGTCCTCCTTTTGCTCCAGGTGGATTTCCAATGGAACCATTTCCATTTTATCGTCCACAATTTCCACCTAATGGTCTCACCAATCCACCTCAAGTTCCTCCTCCTGGAAGTGGTCCAAGAGGGCAGCATAATAATGGAGAACTTTACAGGCCACCTCATATGCCTGATGCTTACATTCCTCCAGGTATGCCATTGAGACCTGGTTTTTTTCCTGGCCCAATGGCCTATGAAGGCTACTATGGTCCTCCAATGGGCTATTGTAATTCAAACGATCGTGATGTCCCTTTCATGGGAATGGCAGCTGGAGCCCCTGTTTATAATAGGAACTCAAGTCAGAATCCACATGAGCCTGGCAATTCACATGGTAGATCTGGTGGACATGATCCTGCGGTAAAGCCATTGGCCTCAGAACCGGTAGAATCGAGCCACACTCCTGATACTGTCGGACCCTACAGGGTTCTTCTTAAACAACACAACAACTGGGATGGGAAAAACGAGCCAACAAACTGCGAGGACTCGTTAAAAACTAATGAATCATTTGTCGATATGAGGGACCAAGTGACAATGTCTGTCCAGGAGAATGATCATATTAGGAACATGAAGACAGATTTAAGGAGGACAAGTGCTCATGGCAAAGAAGCTTCTTCTCAAACATCGGGAAATCAAGGATCTAGTTTTGTAAACAATGCCAAATCACTTGAAAGCACCAGAAGCTTTAATAATGATAATATTGCATCAAGGAAATTGGATGGTGTAGTTTCTAATACACTAGAAACTTCATCAAGATTGCCCTCCCCTCAAGATTCCTCTCTGATTCAAAAGATAGAGGGTTTAAATGCAAAAGCCAGGGATAATTCATCTACTAAAAGTAAGGAGGAGAGGAGGAATAAGTTCCATCCTGATAGCCATGCGGAAAATGAAGGCAGTGCTGGTGTTGTGTTTCCTGATACAACCCTTGCCACTGAAGTTAAAAATCCAACTGCTCGTGGAGTGGGTGCTTTTGGAGGCGAAAAGAATTTTGAATCATCATCAGTCAGTGGAACAGCCACATCCAGGCATATTTCTCATGGCATGCAAGGCAGAGGCAATCATCGTAAGGGAAGACTTGATACTCAAGATGCTGATGGTTGGCGAAAGAAGTCTGGGGTCATAGATTCTTCAACTTCATCAGGTGCACAGTTGGATGCAACTAACATTCTTGTTGGTGAGCATCAAATATCTGTTGAGGCCTACGAAAGGTCTGGGTCCTATAGCCAAGTAGGGCGCGAAGGAGAGTCTATGCAAAACTTGGCTAATTCAGCTGATAACCATGCACAGCATGCTAATAATACAAAAGAGTTGGCCAAGCAACAGACTAAGCAACGGCAGGAGGAAGAGGTGGAGCGGCCTAAAAAGCAAAAGGCTAAAAGTCTAGTGAAGTTAGGCGAGGTAAACAAGCGCACACAAGCCGTGGAAGGGTCAACACAGAAAGTGCATGATGCAGATTCTGCCCTACAGAATAAGCAAGAAGCATTTCAACCTTCTGGAGCAGCCGCTTCATCTGTAATGCCTAATGACAATGATGCCTGTCAGGTCAGTGATGCCAACATTAACAGAGTTCAAAAAGCACCCATCTTGTCCAGTGAAACACCTTTAGAGACAGTAAAGAATGCCGACAAAGAACCTGTTCTGAATCACAATAAATCAGCGACCTTGTTCCACAATGTTAATTATGCTGATGCCACTAACGCTTTACAGGTTCATAACAATGTCACATCAAGGCAGAAAAGGGCGGGCTATAAACATAAAAATAATCTTTCTCAAGAGAAGACTTTGAATGTTTCTACAACCTCAAATGTCCCAAAAGTTGAGAATCACACAGTGGCTCATGTTAATGTTTCTTCTGGCATTGCTGCTGGTACAAATGAAGTTATTTCAACCTTCAGCTCAGGCTTACCCATGAATTCAACTTCTACGGTTGAGTCGCCTGTAAACCAGAAAAGGAAGAATAGCAGGAATAGTAAAAACAAACAGAAAGTTGAAGAGCCTTTGTCCGTGGCTGCATTACCATCAGCAACTGCAAAGGAAGTCAATCTTTCTAGAAGCTCTGTTGAAAATAAAGCCAGAAAAGACGTCGAATTAGATCAGGGCTCAGACCAAAGATATATAGAAAATGAAGAACCTTATGGTAGAATGAATGGCCAGTTGAAATCACAGCATTCTCGTAGGATGCCAAGAAGCTTGCAGGCTAATAGACAATCAGAAAAATCCCATGGGTGTGATGTTTTGATGTGGGCACCTGTTAAACCACCAAACAACATAGAGATCTTGGATGAATCAAGTGAGAAAAGTAAAACTGAGGCAATTGTTCCTGCAAAGAGTGATCAGCAGGTGCATAGTTTAAAAAATAAGAGGGCTGAAATGGAGAGATATGTTCCAAAACCTGTTGCAAAAGAAATGGCTCAGCAAGGAAGTTTACAACAAGTGGTGCCCTCGATAAGTCAAGTTCCAGCAGATGACTGTGTTGAAAGAGTTGATTCTGGTCCTCATGGCCCCCAGAATACTAGGCATGCTATTTCAGGTGTTGGAAAAATGGGTTCTGTAATGGAATCTAAAAATGGAGATAGCAGGCAGAGTAGGGCTTGGAAGGGAAAAGCACATGGATCATGGCGGCAAAGGAATTCAATAGAATCAAATGATATGCATGACATGCAAGATGGAGTGAACCATGGTTCAAATTCCTGTCAAAATATTCAGATACCAATGGAGCGTCAGCAATTGCATGTGTCTGAAACAAGCTTGTTGAGAGGGCATTCAAAGCATGCCAATGACACTAGTAAACCAGATGGCAGGGAGAGGCAGGTTCCTTTTAGACGACAGAAGGGCACTGGGGTGAACCATGAAGTTGATGAGAAGAAAAATGCTGGGGACACAGGGAAAACTGAAACATTGCTATCATCGTTTGAGCAAAATCAACCAGATCTCAATGCTGTTTCCATGGAAAGTCAAAGTACTGGAGATCGTATTTCATCTCATTGGCAACCCAAATTTCAGGCATCAACTAATAATCCGAGAGGTAACAGGCCCAAGAGAAAGGAGTCGGCTCATGCTGCTGGTGGTGTATCATTTTCAGATGGTCAAGACAATGAGTCTGGCACTCTTACAGCACAACCTCCGAGCCAATCAGTTCCGGAGAAGTCAAAGAGTGGGGATGCTTCAAATTTAGGGAATCCAGGGACTGTAAGAGAGACTAGAAATGCTCCACCAAAAGGCCGTCCCCACTCCTCGAATCAGGTAGCTGCTAGCTCAAGTGAGCTGGCTCCACCAGGTATGGATTTTAGGCATCAGCAACGTCCATCATCTGGAGGACGCAGAAATGGAAACCAAAACCGTTTTGGAAAGGGACATGAATCTCAGGGAAACTGGGAAACAACTGCGCAAGATGAGTGGCATCATCATAACCAACCTGGTAACCGGGAAAGACAAGGTCCAAACTTTCATAATCATCATGAGTATCAAACTAATGGGCCACATGTTGGTGACAGCAAATCAGACTACTCTGAACGGCCTGAAGATGGTAATTATCAGGCTGGGGGAAGATTTAGGGAGAGAAGTCAAACTCACTCGAGACGAGGTGGTGGAAACTTCTCTCGACGCTAG

Protein sequence

>MsG0380015787.01.T01

MMIILRRLTSSTRRGGMTVLGKVVVPKPINLPSQRLENHGLDPNVEIVPKGTLGWGSKSSSSASNAWGSSLSPNANAGASSPSHLSTRPSSGGSGTRPSTSGSDMASELTTTSAWGSSSRPSSASGPPTSNQTSQTSLRPRSAETRLGSSHLSRFAEHVGENSVAWNGARTTETLGITQRKNDDFSLSTGDFPTLGSEKDKSVHDVELQDHGSHIRPDSSSGLRREKNETSTVDDVPVHDNAKGEAINSWRRDYQAFNEGGMRPGIEKWPGNLQTYHNIPPQHFDVWRGAPVNNHQRDIWFRGPPNGPPFAPGGFPMEPFPFYRPQFPPNGLTNPPQVPPPGSGPRGQHNNGELYRPPHMPDAYIPPGMPLRPGFFPGPMAYEGYYGPPMGYCNSNDRDVPFMGMAAGAPVYNRNSSQNPHEPGNSHGRSGGHDPAVKPLASEPVESSHTPDTVGPYRVLLKQHNNWDGKNEPTNCEDSLKTNESFVDMRDQVTMSVQENDHIRNMKTDLRRTSAHGKEASSQTSGNQGSSFVNNAKSLESTRSFNNDNIASRKLDGVVSNTLETSSRLPSPQDSSLIQKIEGLNAKARDNSSTKSKEERRNKFHPDSHAENEGSAGVVFPDTTLATEVKNPTARGVGAFGGEKNFESSSVSGTATSRHISHGMQGRGNHRKGRLDTQDADGWRKKSGVIDSSTSSGAQLDATNILVGEHQISVEAYERSGSYSQVGREGESMQNLANSADNHAQHANNTKELAKQQTKQRQEEEVERPKKQKAKSLVKLGEVNKRTQAVEGSTQKVHDADSALQNKQEAFQPSGAAASSVMPNDNDACQVSDANINRVQKAPILSSETPLETVKNADKEPVLNHNKSATLFHNVNYADATNALQVHNNVTSRQKRAGYKHKNNLSQEKTLNVSTTSNVPKVENHTVAHVNVSSGIAAGTNEVISTFSSGLPMNSTSTVESPVNQKRKNSRNSKNKQKVEEPLSVAALPSATAKEVNLSRSSVENKARKDVELDQGSDQRYIENEEPYGRMNGQLKSQHSRRMPRSLQANRQSEKSHGCDVLMWAPVKPPNNIEILDESSEKSKTEAIVPAKSDQQVHSLKNKRAEMERYVPKPVAKEMAQQGSLQQVVPSISQVPADDCVERVDSGPHGPQNTRHAISGVGKMGSVMESKNGDSRQSRAWKGKAHGSWRQRNSIESNDMHDMQDGVNHGSNSCQNIQIPMERQQLHVSETSLLRGHSKHANDTSKPDGRERQVPFRRQKGTGVNHEVDEKKNAGDTGKTETLLSSFEQNQPDLNAVSMESQSTGDRISSHWQPKFQASTNNPRGNRPKRKESAHAAGGVSFSDGQDNESGTLTAQPPSQSVPEKSKSGDASNLGNPGTVRETRNAPPKGRPHSSNQVAASSSELAPPGMDFRHQQRPSSGGRRNGNQNRFGKGHESQGNWETTAQDEWHHHNQPGNRERQGPNFHNHHEYQTNGPHVGDSKSDYSERPEDGNYQAGGRFRERSQTHSRRGGGNFSRR*