Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021732.01.T01 | XP_013456512.1 | 83.582 | 67 | 11 | 0 | 25 | 91 | 125 | 191 | 2.53E-31 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021732.01.T01 | B7FNA9 | 79.661 | 59 | 8 | 1 | 108 | 162 | 8 | 66 | 2.93E-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021732.01.T01 | A0A072UNB7 | 83.582 | 67 | 11 | 0 | 25 | 91 | 125 | 191 | 1.21e-31 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000235.01 | MsG0480021732.01 | 0.805358 | 1.387093e-49 | 7.323622e-47 |
| MsG0180000394.01 | MsG0480021732.01 | 0.834717 | 2.549970e-56 | 3.051018e-53 |
| MsG0180000475.01 | MsG0480021732.01 | 0.808585 | 2.880853e-50 | 1.653521e-47 |
| MsG0180000494.01 | MsG0480021732.01 | 0.801208 | 1.003338e-48 | 4.763891e-46 |
| MsG0180000555.01 | MsG0480021732.01 | 0.844766 | 6.167993e-59 | 1.006153e-55 |
| MsG0180000585.01 | MsG0480021732.01 | 0.846439 | 2.170913e-59 | 3.737039e-56 |
| MsG0180000741.01 | MsG0480021732.01 | 0.835250 | 1.871799e-56 | 2.276274e-53 |
| MsG0180000797.01 | MsG0480021732.01 | 0.810674 | 1.025140e-50 | 6.218586e-48 |
| MsG0180001294.01 | MsG0480021732.01 | 0.802999 | 4.296875e-49 | 2.135013e-46 |
| MsG0180001911.01 | MsG0480021732.01 | 0.823880 | 1.091724e-53 | 9.518658e-51 |
| MsG0180001922.01 | MsG0480021732.01 | 0.803223 | 3.862329e-49 | 1.930213e-46 |
| MsG0180002071.01 | MsG0480021732.01 | 0.843253 | 1.570146e-58 | 2.442287e-55 |
| MsG0180002952.01 | MsG0480021732.01 | 0.817725 | 2.841299e-52 | 2.085607e-49 |
| MsG0180003167.01 | MsG0480021732.01 | 0.802151 | 6.428249e-49 | 3.125935e-46 |
| MsG0180003190.01 | MsG0480021732.01 | 0.813259 | 2.801561e-51 | 1.820568e-48 |
| MsG0180003303.01 | MsG0480021732.01 | 0.816683 | 4.872831e-52 | 3.475921e-49 |
| MsG0180003444.01 | MsG0480021732.01 | 0.816838 | 4.497586e-52 | 3.222063e-49 |
| MsG0180004372.01 | MsG0480021732.01 | 0.826680 | 2.374953e-54 | 2.242710e-51 |
| MsG0180004598.01 | MsG0480021732.01 | 0.832410 | 9.605125e-56 | 1.072737e-52 |
| MsG0180004797.01 | MsG0480021732.01 | 0.811544 | 6.640598e-51 | 4.122103e-48 |
| MsG0180004943.01 | MsG0480021732.01 | 0.817160 | 3.809324e-52 | 2.753114e-49 |
| MsG0180005445.01 | MsG0480021732.01 | 0.820185 | 7.837983e-53 | 6.158764e-50 |
| MsG0180005451.01 | MsG0480021732.01 | 0.800566 | 1.357159e-48 | 6.339788e-46 |
| MsG0180005944.01 | MsG0480021732.01 | 0.819826 | 9.470879e-53 | 7.367689e-50 |
| MsG0280010614.01 | MsG0480021732.01 | 0.850912 | 1.249261e-60 | 2.485416e-57 |
| MsG0280010816.01 | MsG0480021732.01 | 0.826898 | 2.107236e-54 | 2.002520e-51 |
| MsG0280010976.01 | MsG0480021732.01 | 0.800944 | 1.136411e-48 | 5.359977e-46 |
| MsG0280011201.01 | MsG0480021732.01 | 0.812782 | 3.565998e-51 | 2.287805e-48 |
| MsG0280011293.01 | MsG0480021732.01 | 0.842332 | 2.758848e-58 | 4.169174e-55 |
| MsG0280011334.01 | MsG0480021732.01 | 0.823926 | 1.064918e-53 | 9.296756e-51 |
| MsG0280011336.01 | MsG0480021732.01 | 0.816780 | 4.635594e-52 | 3.315666e-49 |
| MsG0380012020.01 | MsG0480021732.01 | 0.835773 | 1.380144e-56 | 1.704728e-53 |
| MsG0380012033.01 | MsG0480021732.01 | 0.813875 | 2.050881e-51 | 1.355328e-48 |
| MsG0380012124.01 | MsG0480021732.01 | 0.804326 | 2.279705e-49 | 1.172027e-46 |
| MsG0380014576.01 | MsG0480021732.01 | 0.814012 | 1.912959e-51 | 1.268861e-48 |
| MsG0480018462.01 | MsG0480021732.01 | 0.801936 | 7.116769e-49 | 3.441763e-46 |
| MsG0480018640.01 | MsG0480021732.01 | 0.822105 | 2.829739e-53 | 2.345989e-50 |
| MsG0480019289.01 | MsG0480021732.01 | 0.813118 | 3.008749e-51 | 1.947663e-48 |
| MsG0480019502.01 | MsG0480021732.01 | 0.811200 | 7.884276e-51 | 4.849907e-48 |
| MsG0480019816.01 | MsG0480021732.01 | 0.807101 | 5.958064e-50 | 3.289438e-47 |
| MsG0480020242.01 | MsG0480021732.01 | 0.807747 | 4.345533e-50 | 2.439984e-47 |
| MsG0480020331.01 | MsG0480021732.01 | 0.824730 | 6.888043e-54 | 6.153342e-51 |
| MsG0480020540.01 | MsG0480021732.01 | 0.823102 | 1.659016e-53 | 1.415061e-50 |
| MsG0480020719.01 | MsG0480021732.01 | 0.811065 | 8.433106e-51 | 5.169168e-48 |
| MsG0480020992.01 | MsG0480021732.01 | 0.800129 | 1.666131e-48 | 7.697258e-46 |
| MsG0480021240.01 | MsG0480021732.01 | 0.815742 | 7.909881e-52 | 5.499552e-49 |
| MsG0480021409.01 | MsG0480021732.01 | 0.813136 | 2.981855e-51 | 1.931223e-48 |
| MsG0480021732.01 | MsG0480021784.01 | 0.808178 | 3.518281e-50 | 1.998052e-47 |
| MsG0480021732.01 | MsG0480021900.01 | 0.832232 | 1.063134e-55 | 1.180991e-52 |
| MsG0480021732.01 | MsG0480022026.01 | 0.827535 | 1.482907e-54 | 1.435574e-51 |
| MsG0480021732.01 | MsG0480022318.01 | 0.828373 | 9.320359e-55 | 9.246821e-52 |
| MsG0480021732.01 | MsG0480022717.01 | 0.801132 | 1.040059e-48 | 4.929011e-46 |
| MsG0480021732.01 | MsG0480023224.01 | 0.816543 | 5.237595e-52 | 3.721827e-49 |
| MsG0480021732.01 | MsG0480023245.01 | 0.807269 | 5.489679e-50 | 3.044305e-47 |
| MsG0480021732.01 | MsG0480023412.01 | 0.813911 | 2.014382e-51 | 1.332389e-48 |
| MsG0480021732.01 | MsG0480023554.01 | 0.809941 | 1.475125e-50 | 8.776934e-48 |
| MsG0480021732.01 | MsG0480023581.01 | 0.802200 | 6.278953e-49 | 3.057035e-46 |
| MsG0480021732.01 | MsG0480023873.01 | 0.827063 | 1.923874e-54 | 1.837078e-51 |
| MsG0480021732.01 | MsG0580024157.01 | 0.805079 | 1.587428e-49 | 8.321217e-47 |
| MsG0480021732.01 | MsG0580024205.01 | 0.838477 | 2.810111e-57 | 3.768326e-54 |
| MsG0480021732.01 | MsG0580024374.01 | 0.812463 | 4.186120e-51 | 2.663576e-48 |
| MsG0480021732.01 | MsG0580024418.01 | 0.805460 | 1.320782e-49 | 6.991725e-47 |
| MsG0480021732.01 | MsG0580024586.01 | 0.801350 | 9.387490e-49 | 4.473169e-46 |
| MsG0480021732.01 | MsG0580024682.01 | 0.827422 | 1.578585e-54 | 1.523361e-51 |
| MsG0480021732.01 | MsG0580024733.01 | 0.808587 | 2.879052e-50 | 1.652532e-47 |
| MsG0480021732.01 | MsG0580024960.01 | 0.844125 | 9.173570e-59 | 1.466588e-55 |
| MsG0480021732.01 | MsG0580025184.01 | 0.806606 | 7.580387e-50 | 4.132059e-47 |
| MsG0480021732.01 | MsG0580025237.01 | 0.831002 | 2.136391e-55 | 2.288622e-52 |
| MsG0480021732.01 | MsG0580025907.01 | 0.827315 | 1.674474e-54 | 1.610900e-51 |
| MsG0480021732.01 | MsG0580026068.01 | 0.831764 | 1.387464e-55 | 1.520468e-52 |
| MsG0480021732.01 | MsG0580026664.01 | 0.810857 | 9.358308e-51 | 5.704684e-48 |
| MsG0480021732.01 | MsG0580029629.01 | 0.825221 | 5.274695e-54 | 4.778456e-51 |
| MsG0480021732.01 | MsG0580029639.01 | 0.805319 | 1.413732e-49 | 7.456529e-47 |
| MsG0480021732.01 | MsG0580029762.01 | 0.807699 | 4.449762e-50 | 2.495251e-47 |
| MsG0480021732.01 | MsG0680030321.01 | 0.802326 | 5.915181e-49 | 2.889493e-46 |
| MsG0480021732.01 | MsG0680030685.01 | 0.801170 | 1.021536e-48 | 4.845661e-46 |
| MsG0480021732.01 | MsG0680033302.01 | 0.810957 | 8.901172e-51 | 5.440906e-48 |
| MsG0480021732.01 | MsG0680034757.01 | 0.815166 | 1.062596e-51 | 7.271120e-49 |
| MsG0480021732.01 | MsG0780036548.01 | 0.803391 | 3.565189e-49 | 1.789387e-46 |
| MsG0480021732.01 | MsG0780036773.01 | 0.812978 | 3.229041e-51 | 2.082503e-48 |
| MsG0480021732.01 | MsG0780037515.01 | 0.813349 | 2.677918e-51 | 1.744589e-48 |
| MsG0480021732.01 | MsG0780037975.01 | 0.836128 | 1.122154e-56 | 1.401065e-53 |
| MsG0480021732.01 | MsG0780038323.01 | 0.801380 | 9.255762e-49 | 4.413688e-46 |
| MsG0480021732.01 | MsG0780039777.01 | 0.839216 | 1.809338e-57 | 2.481756e-54 |
| MsG0480021732.01 | MsG0780040488.01 | 0.819179 | 1.330635e-52 | 1.016597e-49 |
| MsG0480021732.01 | MsG0780041161.01 | 0.809210 | 2.117958e-50 | 1.236005e-47 |
| MsG0480021732.01 | MsG0780041305.01 | 0.808459 | 3.064785e-50 | 1.753422e-47 |
| MsG0480021732.01 | MsG0780041469.01 | 0.822659 | 2.105035e-53 | 1.773082e-50 |
| MsG0480021732.01 | MsG0880042329.01 | 0.832358 | 9.895072e-56 | 1.103353e-52 |
| MsG0480021732.01 | MsG0880043001.01 | 0.803245 | 3.822730e-49 | 1.911462e-46 |
| MsG0480021732.01 | MsG0880043116.01 | 0.840857 | 6.755716e-58 | 9.749366e-55 |
| MsG0480021732.01 | MsG0880043522.01 | 0.813032 | 3.143130e-51 | 2.030048e-48 |
| MsG0480021732.01 | MsG0880043533.01 | 0.838323 | 3.079016e-57 | 4.109188e-54 |
| MsG0480021732.01 | MsG0880044546.01 | 0.804532 | 2.065084e-49 | 1.067292e-46 |
| MsG0480021732.01 | MsG0880044732.01 | 0.825312 | 5.021573e-54 | 4.560731e-51 |
| MsG0480021732.01 | MsG0880044917.01 | 0.813103 | 3.032085e-51 | 1.961966e-48 |
| MsG0480021732.01 | MsG0880045106.01 | 0.805089 | 1.579862e-49 | 8.283620e-47 |
| MsG0480021732.01 | MsG0880046027.01 | 0.817663 | 2.934775e-52 | 2.150467e-49 |
| MsG0480021732.01 | MsG0880046047.01 | 0.807280 | 5.459103e-50 | 3.028263e-47 |
| MsG0480021732.01 | MsG0880046329.01 | 0.824147 | 9.450252e-54 | 8.301557e-51 |
| MsG0480021732.01 | MsG0880047437.01 | 0.825817 | 3.812333e-54 | 3.512704e-51 |
| MsG0480021732.01 | MsG0880047497.01 | 0.820555 | 6.447387e-53 | 5.118065e-50 |
| MsG0480021732.01 | MsG0880047745.01 | 0.806717 | 7.183347e-50 | 3.926820e-47 |
| MsG0380015436.01 | MsG0480021732.01 | 0.800327 | 1.517972e-48 | 7.048522e-46 |
| MsG0380015931.01 | MsG0480021732.01 | 0.804728 | 1.879582e-49 | 9.764563e-47 |
| MsG0380016227.01 | MsG0480021732.01 | 0.808009 | 3.822519e-50 | 2.161073e-47 |
| MsG0380016397.01 | MsG0480021732.01 | 0.821819 | 3.296328e-53 | 2.710853e-50 |
| MsG0380016859.01 | MsG0480021732.01 | 0.828126 | 1.068853e-54 | 1.052827e-51 |
| MsG0380016971.01 | MsG0480021732.01 | 0.802988 | 4.320349e-49 | 2.146067e-46 |
| MsG0380017055.01 | MsG0480021732.01 | 0.806569 | 7.717492e-50 | 4.202919e-47 |
| MsG0380017195.01 | MsG0480021732.01 | 0.812678 | 3.756732e-51 | 2.403715e-48 |
| MsG0380017232.01 | MsG0480021732.01 | 0.802225 | 6.205592e-49 | 3.023336e-46 |
| MsG0380017375.01 | MsG0480021732.01 | 0.812674 | 3.763961e-51 | 2.408140e-48 |
| MsG0380017403.01 | MsG0480021732.01 | 0.803301 | 3.722091e-49 | 1.863779e-46 |
| MsG0380017604.01 | MsG0480021732.01 | 0.800040 | 1.737038e-48 | 8.006618e-46 |
| MsG0380017939.01 | MsG0480021732.01 | 0.806769 | 7.004694e-50 | 3.834224e-47 |
| MsG0280006692.01 | MsG0480021732.01 | 0.807095 | 5.974735e-50 | 3.298235e-47 |
| MsG0280007048.01 | MsG0480021732.01 | 0.836065 | 1.163793e-56 | 1.450307e-53 |
| MsG0280007087.01 | MsG0480021732.01 | 0.801556 | 8.517900e-49 | 4.079879e-46 |
| MsG0280007117.01 | MsG0480021732.01 | 0.801174 | 1.019701e-48 | 4.837449e-46 |
| MsG0280007564.01 | MsG0480021732.01 | 0.841087 | 5.878202e-58 | 8.541950e-55 |
| MsG0280007585.01 | MsG0480021732.01 | 0.830762 | 2.447004e-55 | 2.602780e-52 |
| MsG0280008030.01 | MsG0480021732.01 | 0.806021 | 1.006879e-49 | 5.407495e-47 |
| MsG0280008295.01 | MsG0480021732.01 | 0.800725 | 1.259502e-48 | 5.907381e-46 |
| MsG0280008763.01 | MsG0480021732.01 | 0.805183 | 1.509620e-49 | 7.934521e-47 |
| MsG0280010447.01 | MsG0480021732.01 | 0.823161 | 1.607679e-53 | 1.373478e-50 |
| MsG0280010459.01 | MsG0480021732.01 | 0.819617 | 1.056900e-52 | 8.173539e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021732.01.T01 | MTR_4g074150 | 83.582 | 67 | 11 | 0 | 25 | 91 | 125 | 191 | 3.06e-35 | 129 |
| MsG0480021732.01.T01 | MTR_4g074480 | 79.661 | 59 | 8 | 1 | 108 | 162 | 8 | 66 | 2.85e-20 | 84.7 |
| MsG0480021732.01.T01 | MTR_4g074480 | 79.661 | 59 | 8 | 1 | 108 | 162 | 23 | 81 | 4.75e-20 | 84.3 |
| MsG0480021732.01.T01 | MTR_4g108000 | 79.661 | 59 | 8 | 1 | 108 | 162 | 8 | 66 | 5.31e-20 | 84.3 |
| MsG0480021732.01.T01 | MTR_4g108000 | 79.661 | 59 | 8 | 1 | 108 | 162 | 38 | 96 | 6.43e-20 | 84.3 |
| MsG0480021732.01.T01 | MTR_4g108000 | 79.661 | 59 | 8 | 1 | 108 | 162 | 23 | 81 | 7.10e-20 | 84.3 |
| MsG0480021732.01.T01 | MTR_4g108000 | 79.661 | 59 | 8 | 1 | 108 | 162 | 8 | 66 | 8.35e-20 | 85.1 |
| MsG0480021732.01.T01 | MTR_4g108000 | 79.661 | 59 | 8 | 1 | 108 | 162 | 23 | 81 | 1.04e-19 | 85.1 |
| MsG0480021732.01.T01 | MTR_4g108000 | 79.661 | 59 | 8 | 1 | 108 | 162 | 23 | 81 | 1.11e-19 | 85.1 |
| MsG0480021732.01.T01 | MTR_4g113240 | 35.833 | 120 | 66 | 4 | 4 | 113 | 16 | 134 | 8.22e-14 | 68.6 |
| MsG0480021732.01.T01 | MTR_3g098280 | 51.667 | 60 | 29 | 0 | 32 | 91 | 103 | 162 | 3.10e-13 | 66.6 |
| MsG0480021732.01.T01 | MTR_7g083820 | 34.409 | 93 | 58 | 2 | 1 | 91 | 80 | 171 | 6.47e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021732.01.T01 | AT1G50270 | 34.375 | 128 | 72 | 3 | 2 | 129 | 106 | 221 | 3.26e-15 | 72.4 |
Find 38 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGCATGAAACATAAA+AGG | 0.252581 | 4:+63673819 | None:intergenic |
| ATTGATTTGATTTCGGCTTT+TGG | 0.257426 | 4:-63673759 | MsG0480021732.01.T01:CDS |
| CTTGGACAGCTTTGATTAAT+GGG | 0.293097 | 4:-63673671 | MsG0480021732.01.T01:CDS |
| TGCTTGTATTGATTTGATTT+CGG | 0.312886 | 4:-63673766 | MsG0480021732.01.T01:CDS |
| GCTTGGACAGCTTTGATTAA+TGG | 0.334007 | 4:-63673672 | MsG0480021732.01.T01:CDS |
| GTGAATTGAGAATGAGAAAA+TGG | 0.354008 | 4:+63673879 | None:intergenic |
| CATGCTCAAATATTTAAACT+TGG | 0.381893 | 4:-63673807 | MsG0480021732.01.T01:CDS |
| GGTTGAGAAATTGGATCCTC+TGG | 0.453715 | 4:-63673300 | MsG0480021732.01.T01:CDS |
| AGGGCCATCACCAATGGAAC+GGG | 0.470664 | 4:+63673839 | None:intergenic |
| TTTGATGCGATTAGAGAGCT+TGG | 0.471851 | 4:-63673332 | MsG0480021732.01.T01:CDS |
| ATTAGAGAGCTTGGGATTGA+GGG | 0.476921 | 4:-63673323 | MsG0480021732.01.T01:CDS |
| GATTAGAGAGCTTGGGATTG+AGG | 0.480462 | 4:-63673324 | MsG0480021732.01.T01:CDS |
| ATAATATGCACAATAATTGA+AGG | 0.482405 | 4:+63673239 | None:intergenic |
| ATGCTCAAATATTTAAACTT+GGG | 0.489930 | 4:-63673806 | MsG0480021732.01.T01:CDS |
| TTTACGATAACCCGTTCCAT+TGG | 0.491394 | 4:-63673849 | MsG0480021732.01.T01:CDS |
| CTCAAAGGGATATTGTTGCT+TGG | 0.497017 | 4:-63673689 | MsG0480021732.01.T01:CDS |
| TTGATGCGATTAGAGAGCTT+GGG | 0.504525 | 4:-63673331 | MsG0480021732.01.T01:CDS |
| GCATCAAACACTTGACTGAC+AGG | 0.506089 | 4:+63673347 | None:intergenic |
| GTTTGATGAAAGTCCTCAAA+GGG | 0.517824 | 4:-63673703 | MsG0480021732.01.T01:CDS |
| TTTGAGCATGAAACATAAAA+GGG | 0.517905 | 4:+63673820 | None:intergenic |
| CAAGCAACAATATCCCTTTG+AGG | 0.518086 | 4:+63673690 | None:intergenic |
| TGGTGCTGTGTTGGCATGTA+CGG | 0.519867 | 4:-63673384 | MsG0480021732.01.T01:CDS |
| CAAATCACTTGTGCCTCACC+AGG | 0.528710 | 4:+63673630 | None:intergenic |
| ATTTGTGGATATGAGATTGA+AGG | 0.530666 | 4:-63673612 | MsG0480021732.01.T01:CDS |
| GGTGAGGCACAAGTGATTTG+TGG | 0.535077 | 4:-63673627 | MsG0480021732.01.T01:CDS |
| AAGATGTGGTGGTGCTGTGT+TGG | 0.538012 | 4:-63673393 | MsG0480021732.01.T01:CDS |
| CATAAAAGGGCCATCACCAA+TGG | 0.568107 | 4:+63673833 | None:intergenic |
| AAGGGCCATCACCAATGGAA+CGG | 0.587689 | 4:+63673838 | None:intergenic |
| ATGCACAATAATTGAAGGAG+AGG | 0.593181 | 4:+63673244 | None:intergenic |
| ATAACCCGTTCCATTGGTGA+TGG | 0.602596 | 4:-63673843 | MsG0480021732.01.T01:CDS |
| TGTTTGATGAAAGTCCTCAA+AGG | 0.607230 | 4:-63673704 | MsG0480021732.01.T01:CDS |
| TTTGTGGATATGAGATTGAA+GGG | 0.608327 | 4:-63673611 | MsG0480021732.01.T01:intron |
| AGAAAATGGATGAAAAGACA+TGG | 0.620717 | 4:+63673893 | None:intergenic |
| TAGAGAGCTTGGGATTGAGG+GGG | 0.627540 | 4:-63673321 | MsG0480021732.01.T01:CDS |
| TTAGAGAGCTTGGGATTGAG+GGG | 0.630912 | 4:-63673322 | MsG0480021732.01.T01:CDS |
| CACAGGATGCTGCAAAGATG+TGG | 0.672845 | 4:-63673407 | MsG0480021732.01.T01:intron |
| GATGCAGATGTAATAACCAG+AGG | 0.692682 | 4:+63673284 | None:intergenic |
| AGGATGCTGCAAAGATGTGG+TGG | 0.699925 | 4:-63673404 | MsG0480021732.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATGCACAATAATTGA+AGG | + | Chr4:63673887-63673906 | None:intergenic | 20.0% |
| !! | ATGCTCAAATATTTAAACTT+GGG | - | Chr4:63673317-63673336 | MsG0480021732.01.T01:CDS | 20.0% |
| ! | ATTTGAGCATGAAACATAAA+AGG | + | Chr4:63673307-63673326 | None:intergenic | 25.0% |
| ! | CATGCTCAAATATTTAAACT+TGG | - | Chr4:63673316-63673335 | MsG0480021732.01.T01:CDS | 25.0% |
| ! | TTTGAGCATGAAACATAAAA+GGG | + | Chr4:63673306-63673325 | None:intergenic | 25.0% |
| !!! | TGCTTGTATTGATTTGATTT+CGG | - | Chr4:63673357-63673376 | MsG0480021732.01.T01:CDS | 25.0% |
| ATTTGTGGATATGAGATTGA+AGG | - | Chr4:63673511-63673530 | MsG0480021732.01.T01:intron | 30.0% | |
| CAATCGTTATTTATTGTCAC+AGG | - | Chr4:63673699-63673718 | MsG0480021732.01.T01:CDS | 30.0% | |
| GTGAATTGAGAATGAGAAAA+TGG | + | Chr4:63673247-63673266 | None:intergenic | 30.0% | |
| TTTGTGGATATGAGATTGAA+GGG | - | Chr4:63673512-63673531 | MsG0480021732.01.T01:intron | 30.0% | |
| TTTGTTAAAAACGATGTTCC+TGG | - | Chr4:63673475-63673494 | MsG0480021732.01.T01:intron | 30.0% | |
| !! | TTGATTTGATTTCGGCTTTT+GGG | - | Chr4:63673365-63673384 | MsG0480021732.01.T01:CDS | 30.0% |
| !! | TTGTGATTGATGGTTTTCTA+TGG | - | Chr4:63673537-63673556 | MsG0480021732.01.T01:intron | 30.0% |
| !!! | ATTGATTTGATTTCGGCTTT+TGG | - | Chr4:63673364-63673383 | MsG0480021732.01.T01:CDS | 30.0% |
| AAAAAAACCAAACGCTTTGC+AGG | + | Chr4:63673619-63673638 | None:intergenic | 35.0% | |
| ATGCACAATAATTGAAGGAG+AGG | + | Chr4:63673882-63673901 | None:intergenic | 35.0% | |
| GTTTGATGAAAGTCCTCAAA+GGG | - | Chr4:63673420-63673439 | MsG0480021732.01.T01:intron | 35.0% | |
| TGTTTGATGAAAGTCCTCAA+AGG | - | Chr4:63673419-63673438 | MsG0480021732.01.T01:intron | 35.0% | |
| TTCTGTTTATTGTGCTCTTG+TGG | - | Chr4:63673560-63673579 | MsG0480021732.01.T01:intron | 35.0% | |
| ! | CTTGGACAGCTTTGATTAAT+GGG | - | Chr4:63673452-63673471 | MsG0480021732.01.T01:intron | 35.0% |
| ATTAGAGAGCTTGGGATTGA+GGG | - | Chr4:63673800-63673819 | MsG0480021732.01.T01:CDS | 40.0% | |
| CAAGCAACAATATCCCTTTG+AGG | + | Chr4:63673436-63673455 | None:intergenic | 40.0% | |
| CTCAAAGGGATATTGTTGCT+TGG | - | Chr4:63673434-63673453 | MsG0480021732.01.T01:intron | 40.0% | |
| GATGCAGATGTAATAACCAG+AGG | + | Chr4:63673842-63673861 | None:intergenic | 40.0% | |
| TAAAAACGATGTTCCTGGTG+AGG | - | Chr4:63673480-63673499 | MsG0480021732.01.T01:intron | 40.0% | |
| TTGATGCGATTAGAGAGCTT+GGG | - | Chr4:63673792-63673811 | MsG0480021732.01.T01:CDS | 40.0% | |
| TTTACGATAACCCGTTCCAT+TGG | - | Chr4:63673274-63673293 | MsG0480021732.01.T01:CDS | 40.0% | |
| TTTGATGCGATTAGAGAGCT+TGG | - | Chr4:63673791-63673810 | MsG0480021732.01.T01:CDS | 40.0% | |
| ! | GCTTGGACAGCTTTGATTAA+TGG | - | Chr4:63673451-63673470 | MsG0480021732.01.T01:intron | 40.0% |
| ! | GTGGACATGTATTTCAAGTG+TGG | - | Chr4:63673579-63673598 | MsG0480021732.01.T01:intron | 40.0% |
| !! | TTGAAGGGTGTTGTGATTGA+TGG | - | Chr4:63673527-63673546 | MsG0480021732.01.T01:intron | 40.0% |
| ATAACCCGTTCCATTGGTGA+TGG | - | Chr4:63673280-63673299 | MsG0480021732.01.T01:CDS | 45.0% | |
| CATAAAAGGGCCATCACCAA+TGG | + | Chr4:63673293-63673312 | None:intergenic | 45.0% | |
| GATTAGAGAGCTTGGGATTG+AGG | - | Chr4:63673799-63673818 | MsG0480021732.01.T01:CDS | 45.0% | |
| GATTGAGGGGGTTGAGAAAT+TGG | - | Chr4:63673814-63673833 | MsG0480021732.01.T01:CDS | 45.0% | |
| GCATCAAACACTTGACTGAC+AGG | + | Chr4:63673779-63673798 | None:intergenic | 45.0% | |
| GGTTGAGAAATTGGATCCTC+TGG | - | Chr4:63673823-63673842 | MsG0480021732.01.T01:CDS | 45.0% | |
| TTAGAGAGCTTGGGATTGAG+GGG | - | Chr4:63673801-63673820 | MsG0480021732.01.T01:CDS | 45.0% | |
| !! | ATTTCGGCTTTTGGGTGTTC+TGG | - | Chr4:63673373-63673392 | MsG0480021732.01.T01:CDS | 45.0% |
| !! | TTTCGGCTTTTGGGTGTTCT+GGG | - | Chr4:63673374-63673393 | MsG0480021732.01.T01:CDS | 45.0% |
| AAGGGCCATCACCAATGGAA+CGG | + | Chr4:63673288-63673307 | None:intergenic | 50.0% | |
| AGGATGCTGCAAAGATGTGG+TGG | - | Chr4:63673719-63673738 | MsG0480021732.01.T01:CDS | 50.0% | |
| CAAATCACTTGTGCCTCACC+AGG | + | Chr4:63673496-63673515 | None:intergenic | 50.0% | |
| CACAGGATGCTGCAAAGATG+TGG | - | Chr4:63673716-63673735 | MsG0480021732.01.T01:CDS | 50.0% | |
| GGTGAGGCACAAGTGATTTG+TGG | - | Chr4:63673496-63673515 | MsG0480021732.01.T01:intron | 50.0% | |
| TAGAGAGCTTGGGATTGAGG+GGG | - | Chr4:63673802-63673821 | MsG0480021732.01.T01:CDS | 50.0% | |
| ! | GATGATGCCTGCAAAGCGTT+TGG | - | Chr4:63673609-63673628 | MsG0480021732.01.T01:intron | 50.0% |
| !! | AAGATGTGGTGGTGCTGTGT+TGG | - | Chr4:63673730-63673749 | MsG0480021732.01.T01:CDS | 50.0% |
| !! | TGGTGCTGTGTTGGCATGTA+CGG | - | Chr4:63673739-63673758 | MsG0480021732.01.T01:CDS | 50.0% |
| AGGGCCATCACCAATGGAAC+GGG | + | Chr4:63673287-63673306 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 63673232 | 63673913 | 63673232 | ID=MsG0480021732.01;Name=MsG0480021732.01 |
| Chr4 | mRNA | 63673232 | 63673913 | 63673232 | ID=MsG0480021732.01.T01;Parent=MsG0480021732.01;Name=MsG0480021732.01.T01;_AED=0.50;_eAED=0.80;_QI=0|0|0|1|1|1|2|0|164 |
| Chr4 | exon | 63673612 | 63673913 | 63673612 | ID=MsG0480021732.01.T01:exon:3545;Parent=MsG0480021732.01.T01 |
| Chr4 | exon | 63673232 | 63673424 | 63673232 | ID=MsG0480021732.01.T01:exon:3546;Parent=MsG0480021732.01.T01 |
| Chr4 | CDS | 63673612 | 63673913 | 63673612 | ID=MsG0480021732.01.T01:cds;Parent=MsG0480021732.01.T01 |
| Chr4 | CDS | 63673232 | 63673424 | 63673232 | ID=MsG0480021732.01.T01:cds;Parent=MsG0480021732.01.T01 |
| Gene Sequence |
| Protein sequence |
