AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000394.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000394.01.T01 MTR_1g016880 98.140 215 4 0 1 215 1 215 3.28e-153 431
MsG0180000394.01.T01 MTR_8g015500 69.061 181 53 1 35 215 75 252 1.31e-87 266
MsG0180000394.01.T01 MTR_5g055480 50.485 206 89 3 25 218 30 234 6.29e-65 207
MsG0180000394.01.T01 MTR_1g110290 60.784 153 59 1 63 215 82 233 8.96e-64 204
MsG0180000394.01.T01 MTR_2g005350 60.284 141 56 0 75 215 137 277 3.00e-57 188
MsG0180000394.01.T01 MTR_5g006930 59.333 150 59 2 67 215 78 226 3.08e-57 187
MsG0180000394.01.T01 MTR_6g083830 53.939 165 74 2 52 215 96 259 1.11e-55 184
MsG0180000394.01.T01 MTR_5g006920 58.000 150 61 2 67 215 113 261 7.74e-55 182
MsG0180000394.01.T01 MTR_3g104840 57.237 152 63 2 68 218 104 254 8.24e-54 178
MsG0180000394.01.T01 MTR_1g009960 40.000 190 108 4 25 213 32 216 9.38e-35 128
MsG0180000394.01.T01 MTR_1g009960 40.000 190 108 4 25 213 32 216 1.21e-34 128
MsG0180000394.01.T01 MTR_3g108740 44.444 144 75 4 75 216 60 200 4.96e-32 121
MsG0180000394.01.T01 MTR_2g037600 50.450 111 53 1 106 216 105 213 3.97e-31 119
MsG0180000394.01.T01 MTR_4g127550 51.818 110 51 1 107 216 108 215 1.36e-30 117
MsG0180000394.01.T01 MTR_2g037620 48.673 113 56 1 106 218 97 207 1.50e-30 117
MsG0180000394.01.T01 MTR_2g024120 45.736 129 66 3 91 215 46 174 6.35e-27 107
MsG0180000394.01.T01 MTR_8g094180 45.133 113 59 2 106 215 55 167 2.70e-26 104
MsG0180000394.01.T01 MTR_8g094180 45.133 113 59 2 106 215 55 167 3.68e-26 105
MsG0180000394.01.T01 MTR_3g106930 42.982 114 63 2 107 218 95 208 7.11e-19 85.1
MsG0180000394.01.T01 MTR_1g031060 46.429 112 56 3 106 215 80 189 5.04e-15 73.9
MsG0180000394.01.T01 MTR_1g048320 36.620 142 87 3 106 245 64 204 3.09e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000394.01.T01 AT5G11730 64.159 226 70 2 1 215 1 226 2.73e-94 282
MsG0180000394.01.T01 AT5G25970 62.946 224 72 1 3 215 4 227 2.92e-88 266
MsG0180000394.01.T01 AT5G25970 62.946 224 72 1 3 215 4 227 2.92e-88 266
MsG0180000394.01.T01 AT5G25970 62.946 224 72 1 3 215 4 227 2.92e-88 266
MsG0180000394.01.T01 AT3G21310 63.187 182 62 2 35 215 46 223 2.20e-77 235
MsG0180000394.01.T01 AT3G21310 63.187 182 62 2 35 215 46 223 1.41e-75 234
MsG0180000394.01.T01 AT3G21310 63.187 182 62 2 35 215 46 223 1.41e-75 234
MsG0180000394.01.T01 AT1G51770 57.838 185 71 2 35 215 51 232 9.66e-68 214
MsG0180000394.01.T01 AT1G68390 62.416 149 56 0 67 215 98 246 4.47e-64 205
MsG0180000394.01.T01 AT1G68380 55.618 178 72 2 54 229 76 248 1.25e-63 204
MsG0180000394.01.T01 AT1G51770 55.556 171 69 2 35 201 51 218 3.47e-59 192
MsG0180000394.01.T01 AT1G10280 56.688 157 67 1 59 215 96 251 4.78e-58 190
MsG0180000394.01.T01 AT1G10880 53.571 140 60 2 81 218 93 229 3.15e-47 161
MsG0180000394.01.T01 AT5G16170 52.632 152 59 1 78 216 94 245 1.54e-46 160
MsG0180000394.01.T01 AT1G73810 53.846 143 61 2 75 215 118 257 2.94e-45 157
MsG0180000394.01.T01 AT4G30060 46.358 151 75 4 67 216 71 216 9.97e-34 125
MsG0180000394.01.T01 AT4G30060 46.358 151 75 4 67 216 71 216 9.97e-34 125
MsG0180000394.01.T01 AT2G19160 39.899 198 97 9 24 216 33 213 2.79e-33 124
MsG0180000394.01.T01 AT2G19160 39.899 198 97 9 24 216 33 213 2.79e-33 124
MsG0180000394.01.T01 AT4G31350 53.153 111 50 1 106 216 88 196 1.85e-32 122
MsG0180000394.01.T01 AT4G31350 53.153 111 50 1 106 216 88 196 1.85e-32 122
MsG0180000394.01.T01 AT4G31350 53.153 111 50 1 106 216 88 196 1.85e-32 122
MsG0180000394.01.T01 AT5G57270 38.235 204 110 7 17 216 14 205 3.14e-32 121
MsG0180000394.01.T01 AT5G57270 38.235 204 110 7 17 216 14 205 3.14e-32 121
MsG0180000394.01.T01 AT5G57270 38.235 204 110 7 17 216 14 205 3.14e-32 121
MsG0180000394.01.T01 AT5G57270 38.235 204 110 7 17 216 14 205 3.14e-32 121
MsG0180000394.01.T01 AT5G57270 38.235 204 110 7 17 216 14 205 3.14e-32 121
MsG0180000394.01.T01 AT4G25870 43.165 139 76 2 79 216 70 206 1.00e-30 117
MsG0180000394.01.T01 AT4G31350 51.351 111 47 2 106 216 88 191 2.65e-28 110
MsG0180000394.01.T01 AT5G14550 43.103 116 63 2 103 215 61 176 1.59e-25 102
MsG0180000394.01.T01 AT5G14550 43.103 116 63 2 103 215 61 176 4.49e-25 101
MsG0180000394.01.T01 AT5G14550 43.103 116 63 2 103 215 61 176 6.09e-25 102
MsG0180000394.01.T01 AT5G14550 43.103 116 63 2 103 215 61 176 6.13e-25 101
MsG0180000394.01.T01 AT1G62305 46.094 128 63 5 92 215 56 181 6.85e-25 100
MsG0180000394.01.T01 AT1G62305 46.923 130 59 6 92 215 56 181 8.02e-25 101
MsG0180000394.01.T01 AT1G11940 45.614 114 58 3 106 215 73 186 1.10e-24 99.4
MsG0180000394.01.T01 AT1G11940 45.614 114 58 3 106 215 73 186 3.66e-24 99.8
MsG0180000394.01.T01 AT5G25330 37.624 202 111 7 24 218 4 197 2.59e-20 89.0
MsG0180000394.01.T01 AT3G52060 41.026 117 67 2 106 220 74 190 1.14e-19 87.0
MsG0180000394.01.T01 AT1G62305 46.087 115 52 6 92 200 56 166 1.59e-18 84.0
MsG0180000394.01.T01 AT5G22070 40.351 114 64 3 107 216 71 184 6.49e-16 76.6
MsG0180000394.01.T01 AT4G32290 34.211 190 109 4 31 218 31 206 6.26e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTTATCACTCATATTA+TGG 0.210415 1:-5399175 None:intergenic
CATTGCCTCTTGCACCTGTT+TGG 0.243558 1:+5399288 MsG0180000394.01.T01:CDS
ACTTCTTTGGAGAGCTTCTT+TGG 0.250935 1:+5399196 MsG0180000394.01.T01:CDS
AAAGGGTAATTCTTAATCTT+AGG 0.260696 1:-5399221 None:intergenic
GTATACACAATTAAGCATTT+TGG 0.282389 1:+5399053 MsG0180000394.01.T01:CDS
TGAGTGATAAAGAACTTCTT+TGG 0.293369 1:+5399183 MsG0180000394.01.T01:CDS
ATTGCCTCTTGCACCTGTTT+GGG 0.296741 1:+5399289 MsG0180000394.01.T01:CDS
TTGACTAGAGGGGCCATGTT+TGG 0.342155 1:-5404491 None:intergenic
ATGCACCGACGAAGCTGAAT+TGG 0.347404 1:-5404431 None:intergenic
AGGAACATAAAAGCAATCTT+AGG 0.357395 1:-5399254 None:intergenic
TGACTAGAGGGGCCATGTTT+GGG 0.361044 1:-5404490 None:intergenic
CTCTAGTCAACGTTACAAAA+TGG 0.364473 1:+5404504 MsG0180000394.01.T01:CDS
CGTCGGTGCATTTGATGATC+TGG 0.366558 1:+5404443 MsG0180000394.01.T01:CDS
CGTTGAAGAACGTGCTGGTT+TGG 0.378429 1:+5399121 MsG0180000394.01.T01:CDS
ATCTTAGGAACTCTTTCAAA+AGG 0.395819 1:-5399239 None:intergenic
ATTAGCAAGTAGTCTTCTTT+CGG 0.401766 1:-5404311 None:intergenic
CTCTTGCACCTGTTTGGGAG+AGG 0.412242 1:+5399294 MsG0180000394.01.T01:CDS
TCTTGTTCAGATTGCTGAGT+GGG 0.414497 1:+5404267 MsG0180000394.01.T01:intron
CAAGATGCAATCGAGGGCTT+TGG 0.417995 1:+5398935 None:intergenic
TTCAGAAACCTCTCCCAAAC+AGG 0.428489 1:-5399302 None:intergenic
TCTGAAGAAGGAAAATCAAA+AGG 0.438585 1:+5398960 MsG0180000394.01.T01:CDS
CAAAATATACATACCTGACT+AGG 0.457704 1:-5399419 None:intergenic
AACAGATGAAGGAGGAAACT+TGG 0.460141 1:-5399378 None:intergenic
CAATAGAATAAACCGCTCAT+TGG 0.469034 1:-5404350 None:intergenic
GGAAACTTGGCTTGATAAGA+AGG 0.470311 1:-5399365 None:intergenic
TAAGAGACAAATCCCTAGTC+AGG 0.472658 1:+5399406 MsG0180000394.01.T01:CDS
GTAGAGAGGGATATGTGATT+CGG 0.480850 1:-5404374 None:intergenic
AACGTGCTGGTTTGGAACAA+TGG 0.490018 1:+5399129 MsG0180000394.01.T01:CDS
TTGGCTTGATAAGAAGGAGT+TGG 0.500843 1:-5399359 None:intergenic
TTTGGGAGAGGTTTCTGAAA+GGG 0.509717 1:+5399306 MsG0180000394.01.T01:CDS
GAGGCAATGGTCCTTTAGTA+AGG 0.515491 1:-5399274 None:intergenic
CTAGACTGAATTTGTAGAGA+GGG 0.522832 1:-5404387 None:intergenic
ATATTATGGATCAGATTTGA+AGG 0.522939 1:-5399161 None:intergenic
TTGTAGCGTCCTCTTCCGTA+TGG 0.537017 1:-5404467 None:intergenic
TCTTAGGAACTCTTTCAAAA+GGG 0.537953 1:-5399238 None:intergenic
TTCAGATTGCTGAGTGGGGA+AGG 0.538958 1:+5404272 MsG0180000394.01.T01:intron
CTCTCCCAAACAGGTGCAAG+AGG 0.544373 1:-5399293 None:intergenic
AACGTTACAAAATGGCGTAA+AGG 0.547258 1:+5404512 MsG0180000394.01.T01:CDS
CTGAAGAAGGAAAATCAAAA+GGG 0.552666 1:+5398961 MsG0180000394.01.T01:CDS
CTTGTTCAGATTGCTGAGTG+GGG 0.555008 1:+5404268 MsG0180000394.01.T01:intron
AGGGCTTTGGCATCTGAAGA+AGG 0.556245 1:+5398948 MsG0180000394.01.T01:CDS
CAAACAGGTGCAAGAGGCAA+TGG 0.572308 1:-5399287 None:intergenic
TGATCTGGTCCATACGGAAG+AGG 0.573152 1:+5404458 MsG0180000394.01.T01:CDS
GAAATCCAATTCAGCTTCGT+CGG 0.580589 1:+5404426 MsG0180000394.01.T01:CDS
ATTTGATGATCTGGTCCATA+CGG 0.586526 1:+5404452 MsG0180000394.01.T01:CDS
CCAGCACGTTCTTCAACGCA+TGG 0.586978 1:-5399116 None:intergenic
CCATGCGTTGAAGAACGTGC+TGG 0.593014 1:+5399116 MsG0180000394.01.T01:CDS
AAAATATACATACCTGACTA+GGG 0.593555 1:-5399418 None:intergenic
GTTTGGGAGAGGTTTCTGAA+AGG 0.596050 1:+5399305 MsG0180000394.01.T01:CDS
TTCTTGTTCAGATTGCTGAG+TGG 0.597688 1:+5404266 MsG0180000394.01.T01:intron
TTTAAGCAAGATGCAATCGA+GGG 0.613015 1:+5398929 None:intergenic
TACTTGACATCTCCAATGAG+CGG 0.613960 1:+5404338 MsG0180000394.01.T01:CDS
AAAACACAACACATAGTGCA+AGG 0.624692 1:-5399019 None:intergenic
AGGACGCTACAACCCAAACA+TGG 0.648045 1:+5404478 MsG0180000394.01.T01:CDS
ACTAGACTGAATTTGTAGAG+AGG 0.654314 1:-5404388 None:intergenic
TTATGGATCAGATTTGAAGG+AGG 0.663245 1:-5399158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAGTTAATAATGTTTAAT+TGG + Chr1:5399494-5399513 MsG0180000394.01.T01:intron 15.0%
!! ATAAATAAATACATATCACT+TGG + Chr1:5400667-5400686 MsG0180000394.01.T01:intron 15.0%
!! CTAAAACCTTAAATTATTAA+AGG + Chr1:5400706-5400725 MsG0180000394.01.T01:intron 15.0%
!! TCATAAAAACTTACTATTTA+AGG + Chr1:5402248-5402267 MsG0180000394.01.T01:intron 15.0%
!!! AATTAGTTTTACAAGTTTAT+AGG + Chr1:5401407-5401426 MsG0180000394.01.T01:intron 15.0%
!!! ATTAGTTTTACAAGTTTATA+GGG + Chr1:5401408-5401427 MsG0180000394.01.T01:intron 15.0%
!!! ATTTTTTTTTGAAGAAAAAC+TGG - Chr1:5403735-5403754 None:intergenic 15.0%
!!! CTTTAATAATTTAAGGTTTT+AGG - Chr1:5400708-5400727 None:intergenic 15.0%
!! AAATACTAAAACATGTCATT+TGG + Chr1:5402630-5402649 MsG0180000394.01.T01:intron 20.0%
!! AACTTAATTATCATTTGATG+CGG - Chr1:5400624-5400643 None:intergenic 20.0%
!! AATACTAAAACATTGTCATT+TGG + Chr1:5401973-5401992 MsG0180000394.01.T01:intron 20.0%
!! ATGCTTAAGCTATTAATATA+CGG + Chr1:5400542-5400561 MsG0180000394.01.T01:intron 20.0%
!! CTAAAAGCTTAAATTGTTAA+AGG + Chr1:5401379-5401398 MsG0180000394.01.T01:intron 20.0%
!! CTAGCTTAAAATATCATTTA+GGG + Chr1:5401942-5401961 MsG0180000394.01.T01:intron 20.0%
!! TATATAGTATTGTCAAATAG+CGG - Chr1:5399788-5399807 None:intergenic 20.0%
!! TATGCAAAGTTATATTGTAA+GGG + Chr1:5400207-5400226 MsG0180000394.01.T01:intron 20.0%
!! TATTAATAGCTTAAGCATAT+AGG - Chr1:5400540-5400559 None:intergenic 20.0%
!! TTATGCAAAGTTATATTGTA+AGG + Chr1:5400206-5400225 MsG0180000394.01.T01:intron 20.0%
!! TTCATGCCTTTAATAATTTA+AGG - Chr1:5400715-5400734 None:intergenic 20.0%
!!! AAAACATTTAGGTTTATGTA+AGG + Chr1:5399965-5399984 MsG0180000394.01.T01:intron 20.0%
!!! AAACATTTAGGTTTATGTAA+GGG + Chr1:5399966-5399985 MsG0180000394.01.T01:intron 20.0%
!!! ATTTTTTTGGTTATAGATTG+TGG + Chr1:5399603-5399622 MsG0180000394.01.T01:intron 20.0%
!!! CTTTAACAATTTAAGCTTTT+AGG - Chr1:5401381-5401400 None:intergenic 20.0%
!!! TAATTAAGTTGTGAAGAATA+AGG + Chr1:5400634-5400653 MsG0180000394.01.T01:intron 20.0%
!!! TCTAGCTTAAAATATCATTT+AGG + Chr1:5401941-5401960 MsG0180000394.01.T01:intron 20.0%
! AAAATATACATACCTGACTA+GGG - Chr1:5399421-5399440 None:intergenic 25.0%
! AAACTTAAGCTATTAAGTGA+AGG + Chr1:5401013-5401032 MsG0180000394.01.T01:intron 25.0%
! AAAGGGTAATTCTTAATCTT+AGG - Chr1:5399224-5399243 None:intergenic 25.0%
! AAATGTAACAGCTAATGATA+AGG + Chr1:5402774-5402793 MsG0180000394.01.T01:intron 25.0%
! AACGAGATATCAGAAATATT+AGG - Chr1:5400780-5400799 None:intergenic 25.0%
! AACTCGTTGTGATTAAATTA+CGG + Chr1:5400493-5400512 MsG0180000394.01.T01:intron 25.0%
! AATCACTTTAACAAGATATC+TGG - Chr1:5401462-5401481 None:intergenic 25.0%
! ACTTAATAGCTTAAGTTTAG+AGG - Chr1:5401011-5401030 None:intergenic 25.0%
! AGATATCTGGATATATATTG+TGG - Chr1:5401449-5401468 None:intergenic 25.0%
! ATATTAACCTGTGAAGAATA+AGG + Chr1:5401105-5401124 MsG0180000394.01.T01:intron 25.0%
! ATATTATGGATCAGATTTGA+AGG - Chr1:5399164-5399183 None:intergenic 25.0%
! ATTAGAATTCTAACAGAATC+TGG + Chr1:5400928-5400947 MsG0180000394.01.T01:intron 25.0%
! ATTTACATATGTGGAATCTT+AGG - Chr1:5401495-5401514 None:intergenic 25.0%
! ATTTCCCATTGAGATAAATA+TGG + Chr1:5402304-5402323 MsG0180000394.01.T01:intron 25.0%
! CAATTATCTGATAAAGATAC+TGG - Chr1:5403765-5403784 None:intergenic 25.0%
! CTCTTATAAAAAACAGATGA+AGG - Chr1:5399392-5399411 None:intergenic 25.0%
! GTTCTTTATCACTCATATTA+TGG - Chr1:5399178-5399197 None:intergenic 25.0%
! TACGCAGAAAATGATAAAAA+GGG - Chr1:5400182-5400201 None:intergenic 25.0%
! TGCTTAGGTTTATGTTAATA+TGG + Chr1:5404215-5404234 MsG0180000394.01.T01:intron 25.0%
! TTAATCTGTGTTATCAATCT+TGG - Chr1:5403216-5403235 None:intergenic 25.0%
! TTACGCAGAAAATGATAAAA+AGG - Chr1:5400183-5400202 None:intergenic 25.0%
! TTATAAAAAACAGATGAAGG+AGG - Chr1:5399389-5399408 None:intergenic 25.0%
! TTCTCCATATTTATCTCAAT+GGG - Chr1:5402311-5402330 None:intergenic 25.0%
! TTGAATATTTATTGTGCATG+TGG + Chr1:5403408-5403427 MsG0180000394.01.T01:intron 25.0%
!! AAGGCATGAAATTAGTTTAA+AGG + Chr1:5400725-5400744 MsG0180000394.01.T01:intron 25.0%
!! AGGCATGAAATTAGTTTAAA+GGG + Chr1:5400726-5400745 MsG0180000394.01.T01:intron 25.0%
!! ATTAGAGTTCTAACAGAATT+TGG + Chr1:5401807-5401826 MsG0180000394.01.T01:intron 25.0%
!! GTATACACAATTAAGCATTT+TGG + Chr1:5399053-5399072 MsG0180000394.01.T01:CDS 25.0%
!! TCTAGCTTACAATATCATTT+CGG + Chr1:5402599-5402618 MsG0180000394.01.T01:intron 25.0%
!! TCTCCATATTTTATCTCAAT+GGG - Chr1:5401648-5401667 None:intergenic 25.0%
!! TGAGAATATAACATGCTTTT+GGG + Chr1:5400065-5400084 MsG0180000394.01.T01:intron 25.0%
!! TTAGAAATTAGAGTTCTAAC+AGG + Chr1:5401801-5401820 MsG0180000394.01.T01:intron 25.0%
!! TTCTCCATATTTTATCTCAA+TGG - Chr1:5401649-5401668 None:intergenic 25.0%
!!! ATTGACTTTTGTGAAATGTT+AGG - Chr1:5400822-5400841 None:intergenic 25.0%
!!! ATTTACTTTTACTGCATGTT+CGG + Chr1:5400420-5400439 MsG0180000394.01.T01:intron 25.0%
!!! CATGATAGTCGTTTATTTTT+AGG + Chr1:5404125-5404144 MsG0180000394.01.T01:intron 25.0%
!!! GAGGTTTTGATGAATTTTTT+TGG + Chr1:5399590-5399609 MsG0180000394.01.T01:intron 25.0%
!!! TTCTCGAGTTATTGTTATTT+CGG + Chr1:5403897-5403916 MsG0180000394.01.T01:intron 25.0%
AAATATTAGGCTATGAACAG+AGG - Chr1:5400767-5400786 None:intergenic 30.0%
AACGCAAAAAGAGATCTTTA+TGG - Chr1:5403799-5403818 None:intergenic 30.0%
AAGTAATTGTTGCCTATTCA+TGG + Chr1:5400308-5400327 MsG0180000394.01.T01:intron 30.0%
AAGTTCCACTAAACTAATAG+CGG + Chr1:5399848-5399867 MsG0180000394.01.T01:intron 30.0%
ACCAATTGTTGACATAGTTA+AGG + Chr1:5400872-5400891 MsG0180000394.01.T01:intron 30.0%
ACCTTAACTATGTCAACAAT+TGG - Chr1:5400876-5400895 None:intergenic 30.0%
ACTCGTTGTGATTAAATTAC+GGG + Chr1:5400494-5400513 MsG0180000394.01.T01:intron 30.0%
AGATGTAGGGAGAAAAAATT+AGG + Chr1:5402507-5402526 MsG0180000394.01.T01:intron 30.0%
AGGAAAAAATAAGATCACTC+AGG + Chr1:5400250-5400269 MsG0180000394.01.T01:intron 30.0%
AGGAACATAAAAGCAATCTT+AGG - Chr1:5399257-5399276 None:intergenic 30.0%
ATCATTAAACGTTGTCATTC+AGG - Chr1:5402742-5402761 None:intergenic 30.0%
ATCTTAGGAACTCTTTCAAA+AGG - Chr1:5399242-5399261 None:intergenic 30.0%
ATTAGCAAGTAGTCTTCTTT+CGG - Chr1:5404314-5404333 None:intergenic 30.0%
CAAAATATACATACCTGACT+AGG - Chr1:5399422-5399441 None:intergenic 30.0%
CAACGAGTTTGATGAAATAA+AGG - Chr1:5400482-5400501 None:intergenic 30.0%
CCTCAAAACAATCATAAACA+AGG - Chr1:5399574-5399593 None:intergenic 30.0%
CTAGCTTACAATATCATTTC+GGG + Chr1:5402600-5402619 MsG0180000394.01.T01:intron 30.0%
CTGAAGAAGGAAAATCAAAA+GGG + Chr1:5398961-5398980 MsG0180000394.01.T01:CDS 30.0%
GAGTTTCCAATATTGTGTAT+GGG + Chr1:5401347-5401366 MsG0180000394.01.T01:intron 30.0%
GATGTAGGGAGAAAAAAATT+AGG + Chr1:5401847-5401866 MsG0180000394.01.T01:intron 30.0%
GCTTAAGTTTAGAGGAAATT+TGG - Chr1:5401003-5401022 None:intergenic 30.0%
GGAAAAAATAAGATCACTCA+GGG + Chr1:5400251-5400270 MsG0180000394.01.T01:intron 30.0%
GTTCTCCATATTTATCTCAA+TGG - Chr1:5402312-5402331 None:intergenic 30.0%
GTTGATATTTATTGTGCATG+TGG + Chr1:5403256-5403275 MsG0180000394.01.T01:intron 30.0%
TAAAGTTAGTTAGTGCTTGT+AGG + Chr1:5400899-5400918 MsG0180000394.01.T01:intron 30.0%
TAATTATCATTTGATGCGGT+GGG - Chr1:5400620-5400639 None:intergenic 30.0%
TAGAACTACATAAGGAACTA+AGG + Chr1:5399921-5399940 MsG0180000394.01.T01:intron 30.0%
TAGTACTAGTTAGAGTTAGT+TGG + Chr1:5401768-5401787 MsG0180000394.01.T01:intron 30.0%
TATTAAGTGAAGGACATGAT+TGG + Chr1:5401023-5401042 MsG0180000394.01.T01:intron 30.0%
TCAAGTACAATGTTGTCAAA+TGG - Chr1:5399884-5399903 None:intergenic 30.0%
TCTCCCATTGAGATAAAATA+TGG + Chr1:5401642-5401661 MsG0180000394.01.T01:intron 30.0%
TCTGAAGAAGGAAAATCAAA+AGG + Chr1:5398960-5398979 MsG0180000394.01.T01:CDS 30.0%
TCTTAGGAACTCTTTCAAAA+GGG - Chr1:5399241-5399260 None:intergenic 30.0%
TGAGTGATAAAGAACTTCTT+TGG + Chr1:5399183-5399202 MsG0180000394.01.T01:CDS 30.0%
TTAACTAAGTCAGCAATTGA+GGG - Chr1:5402414-5402433 None:intergenic 30.0%
TTAATTATCATTTGATGCGG+TGG - Chr1:5400621-5400640 None:intergenic 30.0%
TTACTTTCTGATTTCTGTTC+TGG + Chr1:5399654-5399673 MsG0180000394.01.T01:intron 30.0%
! ATCTCTTTTTGCGTTAAGAT+CGG + Chr1:5403804-5403823 MsG0180000394.01.T01:intron 30.0%
! ATTAGAGTTCTAACAGGATT+TGG + Chr1:5402468-5402487 MsG0180000394.01.T01:intron 30.0%
! GAGGGTATACAAAAACATTT+AGG + Chr1:5399954-5399973 MsG0180000394.01.T01:intron 30.0%
! GCTTTTATGTTCCTTACTAA+AGG + Chr1:5399263-5399282 MsG0180000394.01.T01:CDS 30.0%
! GTGAGAATATAACATGCTTT+TGG + Chr1:5400064-5400083 MsG0180000394.01.T01:intron 30.0%
! TAAAACATTGTCATTTGGTG+AGG + Chr1:5401978-5401997 MsG0180000394.01.T01:intron 30.0%
! TTAAGTTGTGAAGAATAAGG+TGG + Chr1:5400637-5400656 MsG0180000394.01.T01:intron 30.0%
!! ATTTTGTAACGTTGACTAGA+GGG - Chr1:5404505-5404524 None:intergenic 30.0%
!! CCTTGTTTATGATTGTTTTG+AGG + Chr1:5399571-5399590 MsG0180000394.01.T01:intron 30.0%
!! TCTCGAGTTATTGTTATTTC+GGG + Chr1:5403898-5403917 MsG0180000394.01.T01:intron 30.0%
!! TTAGAGTTTTTGTTGCTTGT+AGG + Chr1:5402439-5402458 MsG0180000394.01.T01:intron 30.0%
!!! GGGTTCTCAACTATTTTAAT+AGG - Chr1:5402892-5402911 None:intergenic 30.0%
AAAACACAACACATAGTGCA+AGG - Chr1:5399022-5399041 None:intergenic 35.0%
AAAACTGTAGGGAGAAGATT+AGG + Chr1:5400965-5400984 MsG0180000394.01.T01:intron 35.0%
AAATTCAGATCACTTGGTCA+AGG + Chr1:5401325-5401344 MsG0180000394.01.T01:intron 35.0%
AACAAGTGATGAACTAGGTT+AGG - Chr1:5403654-5403673 None:intergenic 35.0%
AACAAGTTTGCAAGTAGACT+CGG + Chr1:5402008-5402027 MsG0180000394.01.T01:intron 35.0%
AACTAAGGAAAGACTTGTGA+GGG + Chr1:5399936-5399955 MsG0180000394.01.T01:intron 35.0%
AATTCTAACAGAATCTGGCA+CGG + Chr1:5400933-5400952 MsG0180000394.01.T01:intron 35.0%
ACACCATATCTTCACCATAT+GGG - Chr1:5404012-5404031 None:intergenic 35.0%
ACAGATAACAGACCATGAAT+AGG - Chr1:5400323-5400342 None:intergenic 35.0%
ACCTTAACTAAGTCAGCAAT+TGG - Chr1:5401749-5401768 None:intergenic 35.0%
ACGTATAATTAGGTCGTATG+TGG - Chr1:5400128-5400147 None:intergenic 35.0%
ACTAGACTGAATTTGTAGAG+AGG - Chr1:5404391-5404410 None:intergenic 35.0%
AGGTAATGTTTAGTGCACTA+TGG - Chr1:5402802-5402821 None:intergenic 35.0%
AGGTTAATATCAGCATGCAA+TGG - Chr1:5401095-5401114 None:intergenic 35.0%
AGTACAATGTTGTCAAATGG+TGG - Chr1:5399881-5399900 None:intergenic 35.0%
AGTAGACTCAGATCATTTCA+AGG + Chr1:5402676-5402695 MsG0180000394.01.T01:intron 35.0%
ATAAGATCACTCAGGGATTA+AGG + Chr1:5400258-5400277 MsG0180000394.01.T01:intron 35.0%
ATAAGTGTGCAGAAACATGT+TGG + Chr1:5400098-5400117 MsG0180000394.01.T01:intron 35.0%
ATACCTAAAATGCCCTTACT+AGG - Chr1:5402866-5402885 None:intergenic 35.0%
ATCTGTGTTATCAATCTTGG+AGG - Chr1:5403213-5403232 None:intergenic 35.0%
ATTACTTCCATGTCTCTTCT+TGG - Chr1:5400295-5400314 None:intergenic 35.0%
ATTGTACTTGATCAGTTCAC+CGG + Chr1:5399893-5399912 MsG0180000394.01.T01:intron 35.0%
CAATAGAATAAACCGCTCAT+TGG - Chr1:5404353-5404372 None:intergenic 35.0%
CATGATACAAGTTTGAGAGA+AGG + Chr1:5400230-5400249 MsG0180000394.01.T01:intron 35.0%
CCAACTAGGTACGTATAATT+AGG - Chr1:5400138-5400157 None:intergenic 35.0%
CCACATATGTAAATGAGACA+GGG + Chr1:5401501-5401520 MsG0180000394.01.T01:intron 35.0%
CCACATATGTAAATGAGACA+TGG + Chr1:5401501-5401520 MsG0180000394.01.T01:intron 35.0%
CCATGTCTCATTTACATATG+TGG - Chr1:5401504-5401523 None:intergenic 35.0%
CCTAATTATACGTACCTAGT+TGG + Chr1:5400135-5400154 MsG0180000394.01.T01:intron 35.0%
CCTTAACTAAGTCAGCAATT+GGG - Chr1:5401748-5401767 None:intergenic 35.0%
CGACGAGTTAAATTTCTCAA+GGG + Chr1:5400013-5400032 MsG0180000394.01.T01:intron 35.0%
CGAGTTTGATGAAATAAAGG+CGG - Chr1:5400479-5400498 None:intergenic 35.0%
CGATAAGTGATTGACAACAT+TGG + Chr1:5401299-5401318 MsG0180000394.01.T01:intron 35.0%
CTAGACTGAATTTGTAGAGA+GGG - Chr1:5404390-5404409 None:intergenic 35.0%
CTCGTTGTGATTAAATTACG+GGG + Chr1:5400495-5400514 MsG0180000394.01.T01:intron 35.0%
CTCTAGTCAACGTTACAAAA+TGG + Chr1:5404504-5404523 MsG0180000394.01.T01:CDS 35.0%
CTGTGTATCATCACACTTTA+TGG - Chr1:5401065-5401084 None:intergenic 35.0%
CTTAAAAGCCTACATCAAAC+AGG + Chr1:5401717-5401736 MsG0180000394.01.T01:intron 35.0%
CTTAAAAGTCTACAGCAAAC+AGG + Chr1:5400844-5400863 MsG0180000394.01.T01:intron 35.0%
CTTAACTAAGTCAGCAATTG+AGG - Chr1:5401747-5401766 None:intergenic 35.0%
CTTAACTAAGTCAGCAATTG+GGG - Chr1:5401747-5401766 None:intergenic 35.0%
GATATGAATAGCATTTGGGT+AGG + Chr1:5403838-5403857 MsG0180000394.01.T01:intron 35.0%
GCTATTAATATACGGACACA+TGG + Chr1:5400550-5400569 MsG0180000394.01.T01:intron 35.0%
GCTTAAGCATATAGGAAAGT+TGG - Chr1:5400532-5400551 None:intergenic 35.0%
GGAGTTTCCAATATTGTGTA+TGG + Chr1:5401346-5401365 MsG0180000394.01.T01:intron 35.0%
GGCTGATATGCACTTTATTA+TGG + Chr1:5399624-5399643 MsG0180000394.01.T01:intron 35.0%
GTCTGTTATCTGTTTGTAGA+GGG + Chr1:5400330-5400349 MsG0180000394.01.T01:intron 35.0%
TAACCTGTGAAGAATAAGGA+TGG + Chr1:5401109-5401128 MsG0180000394.01.T01:intron 35.0%
TCAACATCTTCATCCAATGT+CGG - Chr1:5403962-5403981 None:intergenic 35.0%
TCATCACTTGTTCAAGCTAA+GGG + Chr1:5403662-5403681 MsG0180000394.01.T01:intron 35.0%
TCCACATATGTAAATGAGAC+AGG + Chr1:5401500-5401519 MsG0180000394.01.T01:intron 35.0%
TCGACGAGTTAAATTTCTCA+AGG + Chr1:5400012-5400031 MsG0180000394.01.T01:intron 35.0%
TGAATTTGCAACAACCAACT+AGG - Chr1:5400152-5400171 None:intergenic 35.0%
TGCGGATATGAATAGCATTT+GGG + Chr1:5403834-5403853 MsG0180000394.01.T01:intron 35.0%
TGGTAGAAATTCAGATCACT+TGG + Chr1:5401319-5401338 MsG0180000394.01.T01:intron 35.0%
TTAACTAAGTCAGCAATTGG+GGG - Chr1:5401746-5401765 None:intergenic 35.0%
TTAATATACGGACACATGGT+TGG + Chr1:5400554-5400573 MsG0180000394.01.T01:intron 35.0%
TTATGGATCAGATTTGAAGG+AGG - Chr1:5399161-5399180 None:intergenic 35.0%
TTCATCACTTGTTCAAGCTA+AGG + Chr1:5403661-5403680 MsG0180000394.01.T01:intron 35.0%
TTGTGAAGAATAAGGTGGAA+AGG + Chr1:5400642-5400661 MsG0180000394.01.T01:intron 35.0%
TTTCAAGGAAACTCGTATGA+TGG + Chr1:5402691-5402710 MsG0180000394.01.T01:intron 35.0%
TTTGATACCTAGAGACTCTA+TGG - Chr1:5402570-5402589 None:intergenic 35.0%
! ATGTCATTTGGTGAGGAAAA+TGG + Chr1:5402642-5402661 MsG0180000394.01.T01:intron 35.0%
! ATTTGATGATCTGGTCCATA+CGG + Chr1:5404452-5404471 MsG0180000394.01.T01:CDS 35.0%
! CTAAAACATGTCATTTGGTG+AGG + Chr1:5402635-5402654 MsG0180000394.01.T01:intron 35.0%
! CTATACCGCTATTAGTTTAG+TGG - Chr1:5399856-5399875 None:intergenic 35.0%
! TTGAAATCCTTAAAGTGTCC+CGG - Chr1:5401544-5401563 None:intergenic 35.0%
! TTTCAAGTGGACTCTTATGA+TGG + Chr1:5402035-5402054 MsG0180000394.01.T01:intron 35.0%
! TTTTACTGCATGTTCGGATT+TGG + Chr1:5400426-5400445 MsG0180000394.01.T01:intron 35.0%
! TTTTGGATTTCATGGGAAGA+TGG + Chr1:5400389-5400408 MsG0180000394.01.T01:intron 35.0%
! TTTTTGTTGCAGTTCTCTGT+GGG - Chr1:5404091-5404110 None:intergenic 35.0%
!! CATTTTGTAACGTTGACTAG+AGG - Chr1:5404506-5404525 None:intergenic 35.0%
!! CTCAATTGCTGACTTAGTTA+AGG + Chr1:5402413-5402432 MsG0180000394.01.T01:intron 35.0%
!! CTCGAGTTATTGTTATTTCG+GGG + Chr1:5403899-5403918 MsG0180000394.01.T01:intron 35.0%
!! GCACGTATTTTGGATTTCAT+GGG + Chr1:5400382-5400401 MsG0180000394.01.T01:intron 35.0%
!! GTTGTTTGTTGAGTTGAGAT+TGG + Chr1:5403570-5403589 MsG0180000394.01.T01:intron 35.0%
!! TGCACGTATTTTGGATTTCA+TGG + Chr1:5400381-5400400 MsG0180000394.01.T01:intron 35.0%
!! TTTGACTTTTGACAACCTTG+CGG - Chr1:5401873-5401892 None:intergenic 35.0%
!! TTTTGTAACGTTGACTAGAG+GGG - Chr1:5404504-5404523 None:intergenic 35.0%
!!! GAGATTGGTTTTGGTTCTTT+AGG + Chr1:5403585-5403604 MsG0180000394.01.T01:intron 35.0%
!!! TCTCTTTTTTTACCTCATCG+TGG + Chr1:5402990-5403009 MsG0180000394.01.T01:intron 35.0%
!!! TGTTGAGTTGAGATTGGTTT+TGG + Chr1:5403576-5403595 MsG0180000394.01.T01:intron 35.0%
!!! TTGGTTTTGGTTCTTTAGGA+TGG + Chr1:5403589-5403608 MsG0180000394.01.T01:intron 35.0%
!!! TTTTTTGTTGCAGTTCTCTG+TGG - Chr1:5404092-5404111 None:intergenic 35.0%
AAATATGGAGAACTCCCTGT+CGG + Chr1:5401657-5401676 MsG0180000394.01.T01:intron 40.0%
AACAGATGAAGGAGGAAACT+TGG - Chr1:5399381-5399400 None:intergenic 40.0%
AAGAGCAACCAAAAGTGGTT+TGG - Chr1:5404035-5404054 None:intergenic 40.0%
ACACAGGCTACAAAGATGTA+GGG + Chr1:5401833-5401852 MsG0180000394.01.T01:intron 40.0%
ACTCGTCATGTAACAATGAC+GGG - Chr1:5399697-5399716 None:intergenic 40.0%
AGACTAAGAGCAACCAAAAG+TGG - Chr1:5404040-5404059 None:intergenic 40.0%
ATTGCAACATCATCTCAGCA+AGG + Chr1:5403025-5403044 MsG0180000394.01.T01:intron 40.0%
CACTCGTCATGTAACAATGA+CGG - Chr1:5399698-5399717 None:intergenic 40.0%
CATCACACTTTATGGCCAAA+TGG - Chr1:5401057-5401076 None:intergenic 40.0%
CCCTGTCTCATTTACATATG+TGG - Chr1:5402121-5402140 None:intergenic 40.0%
CTATGATTCTACCTAACTCG+CGG - Chr1:5400452-5400471 None:intergenic 40.0%
CTCATAACCATAGAGTCTCT+AGG + Chr1:5402560-5402579 MsG0180000394.01.T01:intron 40.0%
CTGCGGATATGAATAGCATT+TGG + Chr1:5403833-5403852 MsG0180000394.01.T01:intron 40.0%
GAAATCCAATTCAGCTTCGT+CGG + Chr1:5404426-5404445 MsG0180000394.01.T01:CDS 40.0%
GAACTAAGGAAAGACTTGTG+AGG + Chr1:5399935-5399954 MsG0180000394.01.T01:intron 40.0%
GACACCATATCTTCACCATA+TGG - Chr1:5404013-5404032 None:intergenic 40.0%
GAGAAAAAAATTAGGCCGCA+AGG + Chr1:5401855-5401874 MsG0180000394.01.T01:intron 40.0%
GCTAGTCCCATACACAATAT+TGG - Chr1:5401356-5401375 None:intergenic 40.0%
GCTTGAACAAGTGATGAACT+AGG - Chr1:5403659-5403678 None:intergenic 40.0%
GGACAAGCTACAAAACTGTA+GGG + Chr1:5400954-5400973 MsG0180000394.01.T01:intron 40.0%
GGTCTGTTATCTGTTTGTAG+AGG + Chr1:5400329-5400348 MsG0180000394.01.T01:intron 40.0%
GTAGAGAGGGATATGTGATT+CGG - Chr1:5404377-5404396 None:intergenic 40.0%
GTTAAGATCGGTAAAGACTG+CGG + Chr1:5403816-5403835 MsG0180000394.01.T01:intron 40.0%
GTTATCTGTTTGTAGAGGGT+GGG + Chr1:5400334-5400353 MsG0180000394.01.T01:intron 40.0%
GTTGTCATTCAGGATCTCAA+GGG - Chr1:5402732-5402751 None:intergenic 40.0%
TAACAGAATTTGGCAGACAC+AGG + Chr1:5401817-5401836 MsG0180000394.01.T01:intron 40.0%
TAAGAGACAAATCCCTAGTC+AGG + Chr1:5399406-5399425 MsG0180000394.01.T01:CDS 40.0%
TACGTGCAGATCATCCATTT+AGG - Chr1:5400369-5400388 None:intergenic 40.0%
TACTTGACATCTCCAATGAG+CGG + Chr1:5404338-5404357 MsG0180000394.01.T01:CDS 40.0%
TAGACTCGGATCATTTCAAG+TGG + Chr1:5402022-5402041 MsG0180000394.01.T01:intron 40.0%
TCTTGTTCAGATTGCTGAGT+GGG + Chr1:5404267-5404286 MsG0180000394.01.T01:intron 40.0%
TGCAAATCGTGTCCTAGTAA+GGG + Chr1:5402851-5402870 MsG0180000394.01.T01:intron 40.0%
TGTCCATCCTTATTCTTCAC+AGG - Chr1:5401115-5401134 None:intergenic 40.0%
TGTGAAGAATAAGGATGGAC+AGG + Chr1:5401114-5401133 MsG0180000394.01.T01:intron 40.0%
TGTGTTATCAATCTTGGAGG+TGG - Chr1:5403210-5403229 None:intergenic 40.0%
TGTTATCTGTTTGTAGAGGG+TGG + Chr1:5400333-5400352 MsG0180000394.01.T01:intron 40.0%
TTAAATTACGGGGCTTGTCA+AGG + Chr1:5400505-5400524 MsG0180000394.01.T01:intron 40.0%
TTATCTGTTTGTAGAGGGTG+GGG + Chr1:5400335-5400354 MsG0180000394.01.T01:intron 40.0%
TTCTTGTTCAGATTGCTGAG+TGG + Chr1:5404266-5404285 MsG0180000394.01.T01:intron 40.0%
TTGATACCTAGAGTCTCATC+TGG - Chr1:5401911-5401930 None:intergenic 40.0%
TTGCTGAGATGATGTTGCAA+TGG - Chr1:5403026-5403045 None:intergenic 40.0%
TTGTACTTGATCAGTTCACC+GGG + Chr1:5399894-5399913 MsG0180000394.01.T01:intron 40.0%
TTTGGGTAGGATAACATAGC+TGG + Chr1:5403851-5403870 MsG0180000394.01.T01:intron 40.0%
! AAAATGCCAAGGAGGTATAG+GGG - Chr1:5403169-5403188 None:intergenic 40.0%
! ACTTCTTTGGAGAGCTTCTT+TGG + Chr1:5399196-5399215 MsG0180000394.01.T01:CDS 40.0%
! CAAAATGCCAAGGAGGTATA+GGG - Chr1:5403170-5403189 None:intergenic 40.0%
! CTATACCTCCTTGGCATTTT+GGG + Chr1:5403169-5403188 MsG0180000394.01.T01:intron 40.0%
! CTCAGTATCATCGCATTTTG+TGG - Chr1:5400596-5400615 None:intergenic 40.0%
! GGAAACTTGGCTTGATAAGA+AGG - Chr1:5399368-5399387 None:intergenic 40.0%
! TATACCTCCTTGGCATTTTG+GGG + Chr1:5403170-5403189 MsG0180000394.01.T01:intron 40.0%
! TATGGTGTCCAAACCACTTT+TGG + Chr1:5404024-5404043 MsG0180000394.01.T01:intron 40.0%
! TGAAATCCTTAAAGTGTCCC+GGG - Chr1:5401543-5401562 None:intergenic 40.0%
! TGGATGATCTGCACGTATTT+TGG + Chr1:5400372-5400391 MsG0180000394.01.T01:intron 40.0%
! TTGCTTAGAGAGAAGCACAA+GGG - Chr1:5402918-5402937 None:intergenic 40.0%
! TTGGCTTGATAAGAAGGAGT+TGG - Chr1:5399362-5399381 None:intergenic 40.0%
! TTTGGGAGAGGTTTCTGAAA+GGG + Chr1:5399306-5399325 MsG0180000394.01.T01:CDS 40.0%
!! AAGTGTTGATGTGTCAAGTG+TGG + Chr1:5403927-5403946 MsG0180000394.01.T01:intron 40.0%
!! AATTCCTTAAAGAGTGTCCC+GGG - Chr1:5402160-5402179 None:intergenic 40.0%
!! AGTGTTGATGTGTCAAGTGT+GGG + Chr1:5403928-5403947 MsG0180000394.01.T01:intron 40.0%
!! CCCAATTGCTGACTTAGTTA+AGG + Chr1:5401745-5401764 MsG0180000394.01.T01:intron 40.0%
!! CTTATGTAGTTCTAGCAACC+CGG - Chr1:5399915-5399934 None:intergenic 40.0%
!! GAATTCCTTAAAGAGTGTCC+CGG - Chr1:5402161-5402180 None:intergenic 40.0%
!! TGATTGGTTTGACAGCCATT+TGG + Chr1:5401039-5401058 MsG0180000394.01.T01:intron 40.0%
!!! GCATTTTGGAATTCAGAGTG+TGG + Chr1:5399067-5399086 MsG0180000394.01.T01:CDS 40.0%
!!! TGGTTGGTTTTACAGCCATT+TGG + Chr1:5400570-5400589 MsG0180000394.01.T01:intron 40.0%
!!! TGTCCTAGTAAGGGCATTTT+AGG + Chr1:5402860-5402879 MsG0180000394.01.T01:intron 40.0%
!!! TTTTGACTTTCGACACTGTG+CGG - Chr1:5402533-5402552 None:intergenic 40.0%
AAACAGAGGTAGCACAGAGA+TGG - Chr1:5402948-5402967 None:intergenic 45.0%
ACACAGGCTACACAGATGTA+GGG + Chr1:5402494-5402513 MsG0180000394.01.T01:intron 45.0%
ACTATAGCGCTGTAGCATAG+CGG + Chr1:5401251-5401270 MsG0180000394.01.T01:intron 45.0%
ACTTCCATGTCTCTTCTTGG+AGG - Chr1:5400292-5400311 None:intergenic 45.0%
ATCTTGGAGGTGGAGCAAAA+TGG - Chr1:5403200-5403219 None:intergenic 45.0%
ATGACGAGTGTTATCAGTCG+CGG + Chr1:5399708-5399727 MsG0180000394.01.T01:intron 45.0%
ATTGCCTCTTGCACCTGTTT+GGG + Chr1:5399289-5399308 MsG0180000394.01.T01:CDS 45.0%
CGGACAAGCTACAAAACTGT+AGG + Chr1:5400953-5400972 MsG0180000394.01.T01:intron 45.0%
CGGGTTGCTAGAACTACATA+AGG + Chr1:5399913-5399932 MsG0180000394.01.T01:intron 45.0%
CGTTGTCATTCAGGATCTCA+AGG - Chr1:5402733-5402752 None:intergenic 45.0%
CTAAAAGCTGCCAACCAAGT+CGG - Chr1:5402338-5402357 None:intergenic 45.0%
CTGCAAATCGTGTCCTAGTA+AGG + Chr1:5402850-5402869 MsG0180000394.01.T01:intron 45.0%
CTTAGTCTACCGTGATGATC+CGG + Chr1:5404052-5404071 MsG0180000394.01.T01:intron 45.0%
CTTGTTCAGATTGCTGAGTG+GGG + Chr1:5404268-5404287 MsG0180000394.01.T01:intron 45.0%
GACACAGGCTACAAAGATGT+AGG + Chr1:5401832-5401851 MsG0180000394.01.T01:intron 45.0%
GAGCAGCTATACAAGTGAGA+GGG + Chr1:5403986-5404005 MsG0180000394.01.T01:intron 45.0%
GAGGCAATGGTCCTTTAGTA+AGG - Chr1:5399277-5399296 None:intergenic 45.0%
GGATGAAATTGACCACGATG+AGG - Chr1:5403005-5403024 None:intergenic 45.0%
GTGCACTAAACATTACCTCG+CGG + Chr1:5402804-5402823 MsG0180000394.01.T01:intron 45.0%
GTTTGGGAGAGGTTTCTGAA+AGG + Chr1:5399305-5399324 MsG0180000394.01.T01:CDS 45.0%
TAAAAGCTGCCAACCAAGTC+GGG - Chr1:5402337-5402356 None:intergenic 45.0%
TAACAGGATTTGGCAGACAC+AGG + Chr1:5402478-5402497 MsG0180000394.01.T01:intron 45.0%
TATCTGTTTGTAGAGGGTGG+GGG + Chr1:5400336-5400355 MsG0180000394.01.T01:intron 45.0%
TCAGAACCAGATGAGACTCT+AGG + Chr1:5401902-5401921 MsG0180000394.01.T01:intron 45.0%
TGAGCAGCTATACAAGTGAG+AGG + Chr1:5403985-5404004 MsG0180000394.01.T01:intron 45.0%
TTAGTCTACCGTGATGATCC+GGG + Chr1:5404053-5404072 MsG0180000394.01.T01:intron 45.0%
TTCAGAAACCTCTCCCAAAC+AGG - Chr1:5399305-5399324 None:intergenic 45.0%
! AAATGCCAAGGAGGTATAGG+GGG - Chr1:5403168-5403187 None:intergenic 45.0%
! CATCGCATTTTGTGGCCAAA+TGG - Chr1:5400588-5400607 None:intergenic 45.0%
! CCAAAATGCCAAGGAGGTAT+AGG - Chr1:5403171-5403190 None:intergenic 45.0%
! CCTATACCTCCTTGGCATTT+TGG + Chr1:5403168-5403187 MsG0180000394.01.T01:intron 45.0%
! CTGCATCTGTGCTTTTGCTT+AGG + Chr1:5404200-5404219 MsG0180000394.01.T01:intron 45.0%
! GAAATCCTTAAAGTGTCCCG+GGG - Chr1:5401542-5401561 None:intergenic 45.0%
! GTTGCTTAGAGAGAAGCACA+AGG - Chr1:5402919-5402938 None:intergenic 45.0%
!! AACGTGCTGGTTTGGAACAA+TGG + Chr1:5399129-5399148 MsG0180000394.01.T01:CDS 45.0%
!! ATTCCTTAAAGAGTGTCCCG+GGG - Chr1:5402159-5402178 None:intergenic 45.0%
AAAAGCTGCCAACCAAGTCG+GGG - Chr1:5402336-5402355 None:intergenic 50.0%
AAATGCTAACAAGTGCCCCC+GGG - Chr1:5402288-5402307 None:intergenic 50.0%
AGCTCTGCAGCAAGAAACAG+AGG - Chr1:5402962-5402981 None:intergenic 50.0%
AGGACGCTACAACCCAAACA+TGG + Chr1:5404478-5404497 MsG0180000394.01.T01:CDS 50.0%
AGGGAGAAGATTAGGCAGCA+TGG + Chr1:5400973-5400992 MsG0180000394.01.T01:intron 50.0%
AGTTCTCTGTGGGTCATGAG+GGG - Chr1:5404081-5404100 None:intergenic 50.0%
ATATGGAGAACTCCCCGACT+TGG + Chr1:5402321-5402340 MsG0180000394.01.T01:intron 50.0%
ATCTGTTTGTAGAGGGTGGG+GGG + Chr1:5400337-5400356 MsG0180000394.01.T01:intron 50.0%
CAAACAGGTGCAAGAGGCAA+TGG - Chr1:5399290-5399309 None:intergenic 50.0%
CAGTTCTCTGTGGGTCATGA+GGG - Chr1:5404082-5404101 None:intergenic 50.0%
CATTGCCTCTTGCACCTGTT+TGG + Chr1:5399288-5399307 MsG0180000394.01.T01:CDS 50.0%
GAAATGCTAACAAGTGCCCC+CGG - Chr1:5402289-5402308 None:intergenic 50.0%
GACACAGGCTACACAGATGT+AGG + Chr1:5402493-5402512 MsG0180000394.01.T01:intron 50.0%
GACACGATTTGCAGCATCTG+TGG - Chr1:5402844-5402863 None:intergenic 50.0%
GAGGGCTTCCTGTTTGATGT+AGG - Chr1:5402396-5402415 None:intergenic 50.0%
GCTATGCTACAGCGCTATAG+TGG - Chr1:5401252-5401271 None:intergenic 50.0%
GCTTCCTCCAAGAAGAGACA+TGG + Chr1:5400285-5400304 MsG0180000394.01.T01:intron 50.0%
GGGCCCATATGGTGAAGATA+TGG + Chr1:5404006-5404025 MsG0180000394.01.T01:intron 50.0%
TACAAGTGAGAGGGCCCATA+TGG + Chr1:5403995-5404014 MsG0180000394.01.T01:intron 50.0%
TACTACCCCCTATACCTCCT+TGG + Chr1:5403160-5403179 MsG0180000394.01.T01:intron 50.0%
TCAGCTAAAAGCTGCCGACA+GGG - Chr1:5401674-5401693 None:intergenic 50.0%
TGACTAGAGGGGCCATGTTT+GGG - Chr1:5404493-5404512 None:intergenic 50.0%
TGATCTGGTCCATACGGAAG+AGG + Chr1:5404458-5404477 MsG0180000394.01.T01:CDS 50.0%
TTCAGATTGCTGAGTGGGGA+AGG + Chr1:5404272-5404291 MsG0180000394.01.T01:intron 50.0%
TTGACTAGAGGGGCCATGTT+TGG - Chr1:5404494-5404513 None:intergenic 50.0%
TTGTAGCGTCCTCTTCCGTA+TGG - Chr1:5404470-5404489 None:intergenic 50.0%
! AGAGAGAAGCACAAGGGTGA+GGG - Chr1:5402912-5402931 None:intergenic 50.0%
! AGGGCTTTGGCATCTGAAGA+AGG + Chr1:5398948-5398967 MsG0180000394.01.T01:CDS 50.0%
! ATGCACCGACGAAGCTGAAT+TGG - Chr1:5404434-5404453 None:intergenic 50.0%
! CGTCGGTGCATTTGATGATC+TGG + Chr1:5404443-5404462 MsG0180000394.01.T01:CDS 50.0%
! TAGAGAGAAGCACAAGGGTG+AGG - Chr1:5402913-5402932 None:intergenic 50.0%
!! CGTTGAAGAACGTGCTGGTT+TGG + Chr1:5399121-5399140 MsG0180000394.01.T01:CDS 50.0%
!! GTGGGTTAGAAGTCCGACAT+TGG + Chr1:5403946-5403965 MsG0180000394.01.T01:intron 50.0%
AATGCTAACAAGTGCCCCCG+GGG - Chr1:5402287-5402306 None:intergenic 55.0%
CCAGCACGTTCTTCAACGCA+TGG - Chr1:5399119-5399138 None:intergenic 55.0%
CCATGCGTTGAAGAACGTGC+TGG + Chr1:5399116-5399135 MsG0180000394.01.T01:CDS 55.0%
CTCAGCTAAAAGCTGCCGAC+AGG - Chr1:5401675-5401694 None:intergenic 55.0%
CTCTCCCAAACAGGTGCAAG+AGG - Chr1:5399296-5399315 None:intergenic 55.0%
CTCTTGCACCTGTTTGGGAG+AGG + Chr1:5399294-5399313 MsG0180000394.01.T01:CDS 55.0%
GAGTCTAGTGCTAAACCGCG+AGG - Chr1:5402822-5402841 None:intergenic 55.0%
GCAGTTCTCTGTGGGTCATG+AGG - Chr1:5404083-5404102 None:intergenic 55.0%
GGGGGCTTCCTGTTTGATGT+AGG - Chr1:5401728-5401747 None:intergenic 55.0%
GGTCTTGCTAATGAGTGCCC+CGG + Chr1:5402139-5402158 MsG0180000394.01.T01:intron 55.0%
GTCTTGCTAATGAGTGCCCC+GGG + Chr1:5402140-5402159 MsG0180000394.01.T01:intron 55.0%
GTGGGGGGTAACAGCCTAAA+TGG + Chr1:5400352-5400371 MsG0180000394.01.T01:intron 55.0%
GTTTCTTGCTGCAGAGCTGC+TGG + Chr1:5402964-5402983 MsG0180000394.01.T01:intron 55.0%
TGGGAGATGCTAACGAGTGC+CGG - Chr1:5401629-5401648 None:intergenic 55.0%
TTCGGATTTGGCCGCGAGTT+AGG + Chr1:5400438-5400457 MsG0180000394.01.T01:intron 55.0%
!! AAGGCCCTTAAAGAGTGCCC+CGG + Chr1:5402267-5402286 MsG0180000394.01.T01:intron 55.0%
!! TTCCCATTGAAGAGTGCCCC+CGG + Chr1:5401607-5401626 MsG0180000394.01.T01:intron 55.0%
!!! CCTCCTTGGCATTTTGGGGT+CGG + Chr1:5403174-5403193 MsG0180000394.01.T01:intron 55.0%
CCGACCCCAAAATGCCAAGG+AGG - Chr1:5403177-5403196 None:intergenic 60.0%
GAGGGGAACCCGGATCATCA+CGG - Chr1:5404064-5404083 None:intergenic 60.0%
GAGTGCCCCGGGACACTTTA+AGG + Chr1:5401534-5401553 MsG0180000394.01.T01:intron 60.0%
GGGAGATGCTAACGAGTGCC+GGG - Chr1:5401628-5401647 None:intergenic 60.0%
GGTCTTGCTAACGAGTGCCC+CGG + Chr1:5401522-5401541 MsG0180000394.01.T01:intron 60.0%
GTCTTGCTAACGAGTGCCCC+GGG + Chr1:5401523-5401542 MsG0180000394.01.T01:intron 60.0%
GTGCCCCGGGACACTCTTTA+AGG + Chr1:5402153-5402172 MsG0180000394.01.T01:intron 60.0%
TGGCCGACCCCAAAATGCCA+AGG - Chr1:5403180-5403199 None:intergenic 60.0%
TGTGGGTCATGAGGGGAACC+CGG - Chr1:5404074-5404093 None:intergenic 60.0%
! GGAGATGCTAACGAGTGCCG+GGG - Chr1:5401627-5401646 None:intergenic 60.0%
!! AGGCCCTTAAAGAGTGCCCC+GGG + Chr1:5402268-5402287 MsG0180000394.01.T01:intron 60.0%
!! GAGATGCTAACGAGTGCCGG+GGG - Chr1:5401626-5401645 None:intergenic 60.0%
!! GGAGAACTCCCCGACTTGGT+TGG + Chr1:5402325-5402344 MsG0180000394.01.T01:intron 60.0%
!! TGCCGGGGGCACTCTTCAAT+GGG - Chr1:5401612-5401631 None:intergenic 60.0%
! GCCCCCGGGGCACTCTTTAA+GGG - Chr1:5402274-5402293 None:intergenic 65.0%
! TGCCCCCGGGGCACTCTTTA+AGG - Chr1:5402275-5402294 None:intergenic 65.0%
!! GCCCTTAAAGAGTGCCCCGG+GGG + Chr1:5402270-5402289 MsG0180000394.01.T01:intron 65.0%
!! GGCCCTTAAAGAGTGCCCCG+GGG + Chr1:5402269-5402288 MsG0180000394.01.T01:intron 65.0%
!! GTGCCGGGGGCACTCTTCAA+TGG - Chr1:5401613-5401632 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5398939 5404531 5398939 ID=MsG0180000394.01;Name=MsG0180000394.01
Chr1 mRNA 5398939 5404531 5398939 ID=MsG0180000394.01.T01;Parent=MsG0180000394.01;Name=MsG0180000394.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|247
Chr1 exon 5398939 5399427 5398939 ID=MsG0180000394.01.T01:exon:28251;Parent=MsG0180000394.01.T01
Chr1 exon 5404277 5404531 5404277 ID=MsG0180000394.01.T01:exon:28250;Parent=MsG0180000394.01.T01
Chr1 CDS 5398939 5399427 5398939 ID=MsG0180000394.01.T01:cds;Parent=MsG0180000394.01.T01
Chr1 CDS 5404277 5404531 5404277 ID=MsG0180000394.01.T01:cds;Parent=MsG0180000394.01.T01
Gene Sequence

>MsG0180000394.01.T01

ATGCAATCGAGGGCTTTGGCATCTGAAGAAGGAAAATCAAAAGGGTTATCACTAAGATCACTGCGTTTACTTGTTGTTTTCCTTGCACTATGTGTTGTGTTTTCTGTCATAAGCGTATACACAATTAAGCATTTTGGAATTCAGAGTGTGGTTACTACAATGAGTTCAAGTTTTCAACCATGCGTTGAAGAACGTGCTGGTTTGGAACAATGGATTAAACCTCCTTCAAATCTGATCCATAATATGAGTGATAAAGAACTTCTTTGGAGAGCTTCTTTGGTTCCTAAGATTAAGAATTACCCTTTTGAAAGAGTTCCTAAGATTGCTTTTATGTTCCTTACTAAAGGACCATTGCCTCTTGCACCTGTTTGGGAGAGGTTTCTGAAAGGGCATGAGAGTCGTTATAGTGTGTATGTTCATCCAACTCCTTCTTATCAAGCCAAGTTTCCTCCTTCATCTGTTTTTTATAAGAGACAAATCCCTAGTCAGATTGCTGAGTGGGGAAGGATGAGCATGTGCGACGCCGAAAGAAGACTACTTGCTAATGCATTACTTGACATCTCCAATGAGCGGTTTATTCTATTGTCCGAATCACATATCCCTCTCTACAAATTCAGTCTAGTCTACAACTATTTAATGAAATCCAATTCAGCTTCGTCGGTGCATTTGATGATCTGGTCCATACGGAAGAGGACGCTACAACCCAAACATGGCCCCTCTAGTCAACGTTACAAAATGGCGTAA

Protein sequence

>MsG0180000394.01.T01

MQSRALASEEGKSKGLSLRSLRLLVVFLALCVVFSVISVYTIKHFGIQSVVTTMSSSFQPCVEERAGLEQWIKPPSNLIHNMSDKELLWRASLVPKIKNYPFERVPKIAFMFLTKGPLPLAPVWERFLKGHESRYSVYVHPTPSYQAKFPPSSVFYKRQIPSQIAEWGRMSMCDAERRLLANALLDISNERFILLSESHIPLYKFSLVYNYLMKSNSASSVHLMIWSIRKRTLQPKHGPSSQRYKMA*