AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022773.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022773.01.T01 MTR_4g094625 98.333 240 4 0 9 248 68 307 8.45e-172 476
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 73 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGCAGTTCTTATATTTA+AGG 0.117869 4:+76523357 None:intergenic
GAAATGATTAATGAGCTATT+TGG 0.192176 4:-76523240 MsG0480022773.01.T01:three_prime_UTR
AAATGATTAATGAGCTATTT+GGG 0.221655 4:-76523239 MsG0480022773.01.T01:three_prime_UTR
CCTACAAAGTCTGGTGTTCT+TGG 0.228685 4:-76524350 MsG0480022773.01.T01:CDS
GGAATAGCTTAAGGTGGTTT+AGG 0.279304 4:-76523416 MsG0480022773.01.T01:three_prime_UTR
GCTATTACTGCTGGAGCTTC+TGG 0.292461 4:-76523713 MsG0480022773.01.T01:CDS
TTGTTGTTTGTGTTTCTGTA+TGG 0.323710 4:-76523290 MsG0480022773.01.T01:three_prime_UTR
TGTGTATGTTGATAAATATT+TGG 0.345212 4:-76526075 None:intergenic
TAAAACTTGTGAAGAAAATC+TGG 0.347239 4:-76523386 MsG0480022773.01.T01:three_prime_UTR
CCAAGAACACCAGACTTTGT+AGG 0.348475 4:+76524350 None:intergenic
ACTTCCAGTAGTTCAATATA+TGG 0.380665 4:-76523441 MsG0480022773.01.T01:exon
TTGCATTGGCAGGTTGAGAT+TGG 0.389554 4:-76525028 MsG0480022773.01.T01:intron
AAATCACTCTTTACCTGCTC+TGG 0.408496 4:+76524965 None:intergenic
ATGCTGCATGTAACCTGATC+GGG 0.408784 4:+76524531 None:intergenic
TGTTCCAATCCTACAAAGTC+TGG 0.415836 4:-76524359 MsG0480022773.01.T01:CDS
ATACCTGTCATGTGTTCATC+CGG 0.423217 4:-76523761 MsG0480022773.01.T01:CDS
CCTTCCATATATTGAACTAC+TGG 0.424565 4:+76523437 None:intergenic
TGTTGTTTGTGTTTCTGTAT+GGG 0.436105 4:-76523289 MsG0480022773.01.T01:three_prime_UTR
AACACCAGACTTTGTAGGAT+TGG 0.437626 4:+76524355 None:intergenic
AGTTGAAGCAGGAGCACTAA+TGG 0.440355 4:-76525170 MsG0480022773.01.T01:intron
GCAGAGTCACTTGAGCTAGA+AGG 0.458858 4:-76524413 MsG0480022773.01.T01:CDS
TATATGGAAGGAATAGCTTA+AGG 0.467712 4:-76523425 MsG0480022773.01.T01:three_prime_UTR
CACACTAAGCCTCCCCGATC+AGG 0.470546 4:-76524544 MsG0480022773.01.T01:intron
GCTTCTAACTTCAGCAATCA+TGG 0.475487 4:+76523522 None:intergenic
AGTTGTCACTGCCGCAGAAA+AGG 0.478390 4:-76525996 MsG0480022773.01.T01:intron
TTTCCAGCTGCAGTTGAAGC+AGG 0.479631 4:-76525181 MsG0480022773.01.T01:CDS
TATCAGCCTAACTTCTTGTC+CGG 0.480062 4:-76525462 MsG0480022773.01.T01:intron
GCTCCTGCTTCAACTGCAGC+TGG 0.485920 4:+76525178 None:intergenic
TGCTTCTTAATGAATGGAGT+TGG 0.491886 4:-76523210 MsG0480022773.01.T01:three_prime_UTR
ACAGAAGTCTAAAATAGAAA+AGG 0.492536 4:+76523318 None:intergenic
ATAGCTAGCTTCACCAACTC+CGG 0.493148 4:+76525482 None:intergenic
TGCTGTGACAGCACTTAGCC+CGG 0.502968 4:+76523742 None:intergenic
GCACCTATGGCTATTACTGC+TGG 0.514275 4:-76523722 MsG0480022773.01.T01:CDS
GAATATGCAGCTGCTAAAGT+TGG 0.515315 4:+76523803 None:intergenic
AAGTGCTGTCACAGCACCTA+TGG 0.524433 4:-76523735 MsG0480022773.01.T01:CDS
GACACACACTACACATGAAG+TGG 0.532067 4:-76523470 MsG0480022773.01.T01:CDS
AATATACCGGACAAGAAGTT+AGG 0.532876 4:+76525456 None:intergenic
GTCACTTGAGCTAGAAGGTG+TGG 0.539178 4:-76524408 MsG0480022773.01.T01:CDS
GCAGTTCTTATATTTAAGGA+AGG 0.540309 4:+76523361 None:intergenic
AGCTGCATATTCTATATCAC+GGG 0.546779 4:-76523792 MsG0480022773.01.T01:CDS
TATAGCATGTGACCCGGAGT+TGG 0.553762 4:-76525495 MsG0480022773.01.T01:CDS
GAAGTCTAAAATAGAAAAGG+AGG 0.572131 4:+76523321 None:intergenic
TGTTCTTGGTTTGATTGAGA+AGG 0.574982 4:-76524336 MsG0480022773.01.T01:intron
AATGCTGCATGTAACCTGAT+CGG 0.576394 4:+76524530 None:intergenic
GCTCCAGCAGTAATAGCCAT+AGG 0.583979 4:+76523719 None:intergenic
CAGCTGCATATTCTATATCA+CGG 0.584342 4:-76523793 MsG0480022773.01.T01:CDS
TACCTGTCATGTGTTCATCC+GGG 0.584674 4:-76523760 MsG0480022773.01.T01:CDS
TAGCTAGCTTCACCAACTCC+GGG 0.587229 4:+76525483 None:intergenic
GTGGATATTATTCAAACTGA+GGG 0.588223 4:-76524389 MsG0480022773.01.T01:CDS
CCAGTAGTTCAATATATGGA+AGG 0.595574 4:-76523437 MsG0480022773.01.T01:exon
GTGACAGACAAAACCACAGA+TGG 0.596456 4:+76524576 None:intergenic
TACTGCTGGAGCTTCTGGTG+TGG 0.598767 4:-76523708 MsG0480022773.01.T01:intron
AGCCCGGATGAACACATGAC+AGG 0.601051 4:+76523758 None:intergenic
ATGGAAGGAATAGCTTAAGG+TGG 0.605964 4:-76523422 MsG0480022773.01.T01:three_prime_UTR
CCTTAAATATAAGAACTGCT+AGG 0.606767 4:-76523357 MsG0480022773.01.T01:three_prime_UTR
GATATTATTCAAACTGAGGG+AGG 0.610367 4:-76524386 MsG0480022773.01.T01:CDS
AATGATTAATGAGCTATTTG+GGG 0.614047 4:-76523238 MsG0480022773.01.T01:three_prime_UTR
ATGATTAATGAGCTATTTGG+GGG 0.614442 4:-76523237 MsG0480022773.01.T01:three_prime_UTR
CATGTGTAGTGTGTGTCGGA+AGG 0.614667 4:+76523476 None:intergenic
ATGTGTAGTGTGTGTCGGAA+GGG 0.619185 4:+76523477 None:intergenic
AAGGAGGATACTTCCATCTG+TGG 0.621807 4:-76524589 MsG0480022773.01.T01:CDS
TGTGGATATTATTCAAACTG+AGG 0.627720 4:-76524390 MsG0480022773.01.T01:CDS
ATTTCCAAATCACAGGGTGT+GGG 0.629293 4:-76523577 MsG0480022773.01.T01:intron
ACTTCATGTGTAGTGTGTGT+CGG 0.634907 4:+76523472 None:intergenic
CGTCGATATAGCATGTGACC+CGG 0.645562 4:-76525501 MsG0480022773.01.T01:CDS
TCGGGGAGGCTTAGTGTGTG+AGG 0.656802 4:+76524549 None:intergenic
GTCTAACAAAAGAGACAAGG+AGG 0.671548 4:-76524605 MsG0480022773.01.T01:CDS
TGCTGCATGTAACCTGATCG+GGG 0.675641 4:+76524532 None:intergenic
TGATTAATGAGCTATTTGGG+GGG 0.680744 4:-76523236 MsG0480022773.01.T01:three_prime_UTR
TGAGTCTAACAAAAGAGACA+AGG 0.682958 4:-76524608 MsG0480022773.01.T01:CDS
TTCTGCGGCAGTGACAACTG+AGG 0.690999 4:+76526000 None:intergenic
AGTTAACAAACTAAATGACG+TGG 0.729283 4:-76523548 MsG0480022773.01.T01:CDS
TGCATGTAACCTGATCGGGG+AGG 0.747094 4:+76524535 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACAGTAAAAAAATTAT+TGG + Chr4:76525592-76525611 None:intergenic 10.0%
!! TTTACAGTAAAAAAATTATT+GGG + Chr4:76525591-76525610 None:intergenic 10.0%
!!! TTTTATAATCACTTAAAATT+TGG + Chr4:76523652-76523671 None:intergenic 10.0%
!! ATCTTAATCATTTATAAAGT+TGG - Chr4:76523939-76523958 MsG0480022773.01.T01:intron 15.0%
!! ATTTACTATATAATGTTAGT+TGG + Chr4:76525262-76525281 None:intergenic 15.0%
!!! AATTTTGATGATTTAAAGAA+GGG + Chr4:76525412-76525431 None:intergenic 15.0%
!!! TTTTAAACCATTTTGAAAAT+TGG + Chr4:76525044-76525063 None:intergenic 15.0%
!! AAAAAAACTTAAACTTTGAC+AGG - Chr4:76524817-76524836 MsG0480022773.01.T01:intron 20.0%
!! AAATGATTAATGAGCTATTT+GGG - Chr4:76526022-76526041 MsG0480022773.01.T01:CDS 20.0%
!! ACAAAATTTACCATAATCAT+AGG - Chr4:76523914-76523933 MsG0480022773.01.T01:intron 20.0%
!! ATCATTATCTAGCAATTAAA+AGG + Chr4:76525372-76525391 None:intergenic 20.0%
!! ATTAAGATATCCTATGATTA+TGG + Chr4:76523927-76523946 None:intergenic 20.0%
!! CAAAATTATTCTGATACTAT+TGG - Chr4:76524769-76524788 MsG0480022773.01.T01:intron 20.0%
!! TGTTAAGAACAAATCTTATA+AGG + Chr4:76524208-76524227 None:intergenic 20.0%
!! TTAGAAAAACTTGAATATAC+CGG + Chr4:76523821-76523840 None:intergenic 20.0%
!! TTCTTAACATTATATTGCAT+TGG - Chr4:76524219-76524238 MsG0480022773.01.T01:intron 20.0%
!!! GAATTTTGATGATTTAAAGA+AGG + Chr4:76525413-76525432 None:intergenic 20.0%
!!! GGATGAATTTTAAATGTTTA+TGG + Chr4:76524187-76524206 None:intergenic 20.0%
!!! TATGATTCATTTTATGAGAA+GGG - Chr4:76524260-76524279 MsG0480022773.01.T01:intron 20.0%
!!! TTATGATTCATTTTATGAGA+AGG - Chr4:76524259-76524278 MsG0480022773.01.T01:intron 20.0%
! AAATATCTTGAAGATTCAAG+AGG + Chr4:76523615-76523634 None:intergenic 25.0%
! AATGATTAATGAGCTATTTG+GGG - Chr4:76526023-76526042 MsG0480022773.01.T01:CDS 25.0%
! ATTTACAGTACTCTTAAAAG+AGG - Chr4:76523998-76524017 MsG0480022773.01.T01:intron 25.0%
! ATTTCCAGTAATGAAAATGT+AGG + Chr4:76524994-76525013 None:intergenic 25.0%
! GAAATGATTAATGAGCTATT+TGG - Chr4:76526021-76526040 MsG0480022773.01.T01:CDS 25.0%
! TAAAACTTGTGAAGAAAATC+TGG - Chr4:76525875-76525894 MsG0480022773.01.T01:intron 25.0%
! TAATGAAAATGTAGGCAATT+AGG + Chr4:76524986-76525005 None:intergenic 25.0%
!! ACAGAAGTCTAAAATAGAAA+AGG + Chr4:76525946-76525965 None:intergenic 25.0%
!! ATCAGAATAATTTTGCACTT+TGG + Chr4:76524764-76524783 None:intergenic 25.0%
!! ATCTTGAAGTGCTTTAAATT+TGG - Chr4:76523448-76523467 MsG0480022773.01.T01:exon 25.0%
!! ATTTAGAATGATCTTCTGTT+TGG - Chr4:76523585-76523604 MsG0480022773.01.T01:intron 25.0%
!! TTCTAATCACTGATTATTGT+AGG - Chr4:76525430-76525449 MsG0480022773.01.T01:intron 25.0%
!! TTTAGAATGATCTTCTGTTT+GGG - Chr4:76523586-76523605 MsG0480022773.01.T01:intron 25.0%
ACTTCCAGTAGTTCAATATA+TGG - Chr4:76525820-76525839 MsG0480022773.01.T01:intron 30.0%
ACTTTCAGTATACCTAATGA+TGG + Chr4:76524440-76524459 None:intergenic 30.0%
AGTTAACAAACTAAATGACG+TGG - Chr4:76525713-76525732 MsG0480022773.01.T01:intron 30.0%
ATACATCTGAGGAAGATAAA+AGG + Chr4:76523528-76523547 None:intergenic 30.0%
ATGAACTTACTATACCTTTC+TGG - Chr4:76525626-76525645 MsG0480022773.01.T01:intron 30.0%
ATGATTAATGAGCTATTTGG+GGG - Chr4:76526024-76526043 MsG0480022773.01.T01:CDS 30.0%
CCTAGCAGTTCTTATATTTA+AGG + Chr4:76525907-76525926 None:intergenic 30.0%
CCTTAAATATAAGAACTGCT+AGG - Chr4:76525904-76525923 MsG0480022773.01.T01:intron 30.0%
GCAGTTCTTATATTTAAGGA+AGG + Chr4:76525903-76525922 None:intergenic 30.0%
GTCTTTAACACTCGTTTATA+TGG - Chr4:76523846-76523865 MsG0480022773.01.T01:intron 30.0%
GTGGATATTATTCAAACTGA+GGG - Chr4:76524872-76524891 MsG0480022773.01.T01:intron 30.0%
TAGAAAAGGAGGAAAAAAGA+TGG + Chr4:76525932-76525951 None:intergenic 30.0%
TATATGGAAGGAATAGCTTA+AGG - Chr4:76525836-76525855 MsG0480022773.01.T01:intron 30.0%
TCATACTCTAGTCAAAAGAT+GGG - Chr4:76524157-76524176 MsG0480022773.01.T01:intron 30.0%
TGTGGATATTATTCAAACTG+AGG - Chr4:76524871-76524890 MsG0480022773.01.T01:intron 30.0%
TTCATACTCTAGTCAAAAGA+TGG - Chr4:76524156-76524175 MsG0480022773.01.T01:intron 30.0%
! AATACTAGAGCACTAATCAT+CGG + Chr4:76523336-76523355 None:intergenic 30.0%
! ATTGCCTACATTTTCATTAC+TGG - Chr4:76524987-76525006 MsG0480022773.01.T01:CDS 30.0%
! GAAGTCTAAAATAGAAAAGG+AGG + Chr4:76525943-76525962 None:intergenic 30.0%
! GATTGTGCCAATTTTCAAAA+TGG - Chr4:76525034-76525053 MsG0480022773.01.T01:intron 30.0%
! TAACATTATATTGCATTGGC+AGG - Chr4:76524223-76524242 MsG0480022773.01.T01:intron 30.0%
! TCTAGAAGCATATTTCAATC+AGG - Chr4:76523487-76523506 MsG0480022773.01.T01:CDS 30.0%
! TGTTGTTTGTGTTTCTGTAT+GGG - Chr4:76525972-76525991 MsG0480022773.01.T01:intron 30.0%
!! ATTGATCATTGACTTCTGTT+CGG - Chr4:76525658-76525677 MsG0480022773.01.T01:intron 30.0%
!! CTTCTTTTGAAGATTATCAC+AGG - Chr4:76523209-76523228 MsG0480022773.01.T01:three_prime_UTR 30.0%
!! TTGTTGTTTGTGTTTCTGTA+TGG - Chr4:76525971-76525990 MsG0480022773.01.T01:intron 30.0%
!! TTTTAGATTGAAAGTGTGTC+AGG + Chr4:76525213-76525232 None:intergenic 30.0%
!! TTTTGACTAGAGTATGAACT+TGG + Chr4:76524154-76524173 None:intergenic 30.0%
AATATACCGGACAAGAAGTT+AGG + Chr4:76523808-76523827 None:intergenic 35.0%
AGCTGCATATTCTATATCAC+GGG - Chr4:76525469-76525488 MsG0480022773.01.T01:CDS 35.0%
AGTCAATGATCAATAACTCG+CGG + Chr4:76525652-76525671 None:intergenic 35.0%
CAGCTGCATATTCTATATCA+CGG - Chr4:76525468-76525487 MsG0480022773.01.T01:CDS 35.0%
CCAGTAGTTCAATATATGGA+AGG - Chr4:76525824-76525843 MsG0480022773.01.T01:intron 35.0%
CCTTCCATATATTGAACTAC+TGG + Chr4:76525827-76525846 None:intergenic 35.0%
GATATTATTCAAACTGAGGG+AGG - Chr4:76524875-76524894 MsG0480022773.01.T01:intron 35.0%
GTTTCTTGACTTAAGCATAG+AGG - Chr4:76523868-76523887 MsG0480022773.01.T01:intron 35.0%
TATGAACTTGGAACTGATAC+TGG + Chr4:76524142-76524161 None:intergenic 35.0%
TCAGTATACCTAATGATGGT+TGG + Chr4:76524436-76524455 None:intergenic 35.0%
TGAGTCTAACAAAAGAGACA+AGG - Chr4:76524653-76524672 MsG0480022773.01.T01:intron 35.0%
TGATTAATGAGCTATTTGGG+GGG - Chr4:76526025-76526044 MsG0480022773.01.T01:CDS 35.0%
TGCTTCTTAATGAATGGAGT+TGG - Chr4:76526051-76526070 MsG0480022773.01.T01:CDS 35.0%
TGGAAATGGAACTAGACAAA+AGG + Chr4:76524122-76524141 None:intergenic 35.0%
! GAAGTAAAGAACCTTTTCTG+CGG + Chr4:76523279-76523298 None:intergenic 35.0%
! GGGTTTTGCTTCTTAATGAA+TGG - Chr4:76526045-76526064 MsG0480022773.01.T01:CDS 35.0%
! TGTTCTTGGTTTGATTGAGA+AGG - Chr4:76524925-76524944 MsG0480022773.01.T01:intron 35.0%
AAATCACTCTTTACCTGCTC+TGG + Chr4:76524299-76524318 None:intergenic 40.0%
AACACCAGACTTTGTAGGAT+TGG + Chr4:76524909-76524928 None:intergenic 40.0%
AATGCTGCATGTAACCTGAT+CGG + Chr4:76524734-76524753 None:intergenic 40.0%
ACTGTCAACCAACCATCATT+AGG - Chr4:76524425-76524444 MsG0480022773.01.T01:CDS 40.0%
ACTTCATGTGTAGTGTGTGT+CGG + Chr4:76525792-76525811 None:intergenic 40.0%
AGAGGAACTGGAAAATGCAT+TGG - Chr4:76523886-76523905 MsG0480022773.01.T01:intron 40.0%
ATACCTGTCATGTGTTCATC+CGG - Chr4:76525500-76525519 MsG0480022773.01.T01:CDS 40.0%
ATGGAAGGAATAGCTTAAGG+TGG - Chr4:76525839-76525858 MsG0480022773.01.T01:intron 40.0%
ATTTCCAAATCACAGGGTGT+GGG - Chr4:76525684-76525703 MsG0480022773.01.T01:intron 40.0%
CCACTATGTTAGTACTTCGT+AGG + Chr4:76525067-76525086 None:intergenic 40.0%
CGGTGTATTTCCAAATCACA+GGG - Chr4:76525678-76525697 MsG0480022773.01.T01:intron 40.0%
CTTGGAACTGATACTGGAAA+TGG + Chr4:76524136-76524155 None:intergenic 40.0%
GAATATGCAGCTGCTAAAGT+TGG + Chr4:76525461-76525480 None:intergenic 40.0%
GCTTATCAGCTATACATCTG+AGG + Chr4:76523539-76523558 None:intergenic 40.0%
GCTTCTAACTTCAGCAATCA+TGG + Chr4:76525742-76525761 None:intergenic 40.0%
GGAAGATAAAAGGAGACTTC+AGG + Chr4:76523518-76523537 None:intergenic 40.0%
GGAATAGCTTAAGGTGGTTT+AGG - Chr4:76525845-76525864 MsG0480022773.01.T01:intron 40.0%
GTAGGCAATTAGGAAAAGAC+AGG + Chr4:76524976-76524995 None:intergenic 40.0%
GTCTAACAAAAGAGACAAGG+AGG - Chr4:76524656-76524675 MsG0480022773.01.T01:intron 40.0%
TATCAGCCTAACTTCTTGTC+CGG - Chr4:76523799-76523818 MsG0480022773.01.T01:CDS 40.0%
TATTTCCAAATCACAGGGTG+TGG - Chr4:76525683-76525702 MsG0480022773.01.T01:intron 40.0%
TCGGTGTATTTCCAAATCAC+AGG - Chr4:76525677-76525696 MsG0480022773.01.T01:intron 40.0%
TGACTTAAGCATAGAGGAAC+TGG - Chr4:76523874-76523893 MsG0480022773.01.T01:intron 40.0%
TGTTCCAATCCTACAAAGTC+TGG - Chr4:76524902-76524921 MsG0480022773.01.T01:intron 40.0%
! AGTGATTTTTACTCCAGAGC+AGG - Chr4:76524283-76524302 MsG0480022773.01.T01:intron 40.0%
! CCTACGAAGTACTAACATAG+TGG - Chr4:76525064-76525083 MsG0480022773.01.T01:intron 40.0%
AAGGAGGATACTTCCATCTG+TGG - Chr4:76524672-76524691 MsG0480022773.01.T01:intron 45.0%
AGACTCAGAATCTGCACAGA+AGG + Chr4:76524640-76524659 None:intergenic 45.0%
ATGCTGCATGTAACCTGATC+GGG + Chr4:76524733-76524752 None:intergenic 45.0%
ATGTGTAGTGTGTGTCGGAA+GGG + Chr4:76525787-76525806 None:intergenic 45.0%
CCAAGAACACCAGACTTTGT+AGG + Chr4:76524914-76524933 None:intergenic 45.0%
CCTACAAAGTCTGGTGTTCT+TGG - Chr4:76524911-76524930 MsG0480022773.01.T01:intron 45.0%
GACACACACTACACATGAAG+TGG - Chr4:76525791-76525810 MsG0480022773.01.T01:intron 45.0%
GTGACAGACAAAACCACAGA+TGG + Chr4:76524688-76524707 None:intergenic 45.0%
TACCTGTCATGTGTTCATCC+GGG - Chr4:76525501-76525520 MsG0480022773.01.T01:CDS 45.0%
! ACTGCAGCTGGAAATTTTGC+AGG + Chr4:76524074-76524093 None:intergenic 45.0%
! ATAGCTAGCTTCACCAACTC+CGG + Chr4:76523782-76523801 None:intergenic 45.0%
! GATTGAAAGTGTGTCAGGTC+AGG + Chr4:76525208-76525227 None:intergenic 45.0%
! TTGCATTGGCAGGTTGAGAT+TGG - Chr4:76524233-76524252 MsG0480022773.01.T01:intron 45.0%
!! AGTTGAAGCAGGAGCACTAA+TGG - Chr4:76524091-76524110 MsG0480022773.01.T01:intron 45.0%
AGTTGTCACTGCCGCAGAAA+AGG - Chr4:76523265-76523284 MsG0480022773.01.T01:three_prime_UTR 50.0%
CATGTGTAGTGTGTGTCGGA+AGG + Chr4:76525788-76525807 None:intergenic 50.0%
CGTCGATATAGCATGTGACC+CGG - Chr4:76523760-76523779 MsG0480022773.01.T01:CDS 50.0%
GCACCTATGGCTATTACTGC+TGG - Chr4:76525539-76525558 MsG0480022773.01.T01:intron 50.0%
GCAGAGTCACTTGAGCTAGA+AGG - Chr4:76524848-76524867 MsG0480022773.01.T01:intron 50.0%
GCTATTACTGCTGGAGCTTC+TGG - Chr4:76525548-76525567 MsG0480022773.01.T01:intron 50.0%
GCTCCAGCAGTAATAGCCAT+AGG + Chr4:76525545-76525564 None:intergenic 50.0%
GTCACTTGAGCTAGAAGGTG+TGG - Chr4:76524853-76524872 MsG0480022773.01.T01:intron 50.0%
TATAGCATGTGACCCGGAGT+TGG - Chr4:76523766-76523785 MsG0480022773.01.T01:CDS 50.0%
TCAATAACTCGCGGCCAGAA+AGG + Chr4:76525643-76525662 None:intergenic 50.0%
TGCTGCATGTAACCTGATCG+GGG + Chr4:76524732-76524751 None:intergenic 50.0%
TTGTCAATGCCGTGCTTGCA+GGG - Chr4:76523725-76523744 MsG0480022773.01.T01:CDS 50.0%
TTTCCAGCTGCAGTTGAAGC+AGG - Chr4:76524080-76524099 MsG0480022773.01.T01:intron 50.0%
! AAGTGCTGTCACAGCACCTA+TGG - Chr4:76525526-76525545 MsG0480022773.01.T01:intron 50.0%
! CTACGTACAAGTGTCGCATC+TGG + Chr4:76525104-76525123 None:intergenic 50.0%
! TAGCTAGCTTCACCAACTCC+GGG + Chr4:76523781-76523800 None:intergenic 50.0%
AGAGCCCACACCCTGTGATT+TGG + Chr4:76525691-76525710 None:intergenic 55.0%
AGCCCGGATGAACACATGAC+AGG + Chr4:76525506-76525525 None:intergenic 55.0%
CTGGAGCTTCTGGTGTGGTA+AGG - Chr4:76525558-76525577 MsG0480022773.01.T01:intron 55.0%
CTTGTCAATGCCGTGCTTGC+AGG - Chr4:76523724-76523743 MsG0480022773.01.T01:CDS 55.0%
TACTGCTGGAGCTTCTGGTG+TGG - Chr4:76525553-76525572 MsG0480022773.01.T01:intron 55.0%
TGCATGTAACCTGATCGGGG+AGG + Chr4:76524729-76524748 None:intergenic 55.0%
TGCTGTGACAGCACTTAGCC+CGG + Chr4:76525522-76525541 None:intergenic 55.0%
TTCTGCGGCAGTGACAACTG+AGG + Chr4:76523264-76523283 None:intergenic 55.0%
CACACTAAGCCTCCCCGATC+AGG - Chr4:76524717-76524736 MsG0480022773.01.T01:intron 60.0%
GCTCCTGCTTCAACTGCAGC+TGG + Chr4:76524086-76524105 None:intergenic 60.0%
GTTGCTCCTCCCTGCAAGCA+CGG + Chr4:76523737-76523756 None:intergenic 60.0%
TCAATGCCGTGCTTGCAGGG+AGG - Chr4:76523728-76523747 MsG0480022773.01.T01:CDS 60.0%
TCGGGGAGGCTTAGTGTGTG+AGG + Chr4:76524715-76524734 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76523191 76526092 76523191 ID=MsG0480022773.01;Name=MsG0480022773.01
Chr4 mRNA 76523191 76526092 76523191 ID=MsG0480022773.01.T01;Parent=MsG0480022773.01;Name=MsG0480022773.01.T01;_AED=0.50;_eAED=0.51;_QI=0|1|0.87|1|0.71|0.87|8|262|248
Chr4 exon 76523191 76523584 76523191 ID=MsG0480022773.01.T01:exon:23379;Parent=MsG0480022773.01.T01
Chr4 exon 76523709 76523831 76523709 ID=MsG0480022773.01.T01:exon:23378;Parent=MsG0480022773.01.T01
Chr4 exon 76524337 76524444 76524337 ID=MsG0480022773.01.T01:exon:23377;Parent=MsG0480022773.01.T01
Chr4 exon 76524545 76524634 76524545 ID=MsG0480022773.01.T01:exon:23376;Parent=MsG0480022773.01.T01
Chr4 exon 76524979 76525038 76524979 ID=MsG0480022773.01.T01:exon:23375;Parent=MsG0480022773.01.T01
Chr4 exon 76525171 76525233 76525171 ID=MsG0480022773.01.T01:exon:23374;Parent=MsG0480022773.01.T01
Chr4 exon 76525463 76525537 76525463 ID=MsG0480022773.01.T01:exon:23373;Parent=MsG0480022773.01.T01
Chr4 exon 76525997 76526092 76525997 ID=MsG0480022773.01.T01:exon:23372;Parent=MsG0480022773.01.T01
Chr4 CDS 76525997 76526092 76525997 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76525463 76525537 76525463 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76525171 76525233 76525171 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76524979 76525038 76524979 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76524545 76524634 76524545 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76524337 76524444 76524337 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76523709 76523831 76523709 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 CDS 76523453 76523584 76523453 ID=MsG0480022773.01.T01:cds;Parent=MsG0480022773.01.T01
Chr4 three_prime_UTR 76523191 76523452 76523191 ID=MsG0480022773.01.T01:three_prime_utr;Parent=MsG0480022773.01.T01
Gene Sequence

>MsG0480022773.01.T01

ATGTTGATAAATATTTGGCTTCTTTTGAAGATTATCACAGGCTTGCAGAATTTTGATAAAGACAATGTTGCCTCAGTTGTCACTGCCGCAGAAAAGGGAGGAGCAACTCACGTCGATATAGCATGTGACCCGGAGTTGGTGAAGCTAGCTATCAGCCTAACTTCTTGTCCGATTTGTGTTTCTTCTGTAGATCCTGCAAAATTTCCAGCTGCAGTTGAAGCAGGAGCACTAATGGTTGAGATTGGAAATTATGATTCATTTTATGAGAAGGGAGTGATTTTTACTCCAGAGCAGATTCTGAGTCTAACAAAAGAGACAAGGAGGATACTTCCATCTGTGGTTTTGTCTGTCACTGTTCCTCACACACTAAGCCTCCCCGATCAGGTCAAGCTTGCAGAGTCACTTGAGCTAGAAGGTGTGGATATTATTCAAACTGAGGGAGGAAAATGTTCCAATCCTACAAAGTCTGGTGTTCTTGGTTTGATTGAGAAGGCAACACCAACTTTAGCAGCTGCATATTCTATATCACGGGCTGTTAAGATACCTGTCATGTGTTCATCCGGGCTAAGTGCTGTCACAGCACCTATGGCTATTACTGCTGGAGCTTCTGGTGTGGGTGTGGGCTCTGCAGTTAACAAACTAAATGACGTGGTCGCCATGATTGCTGAAGTTAGAAGCATTGCTGATTCATTGAAGACATCCCTTCCGACACACACTACACATGAAGTGGAAACTCACTTCCAGTAG

Protein sequence

>MsG0480022773.01.T01

MLINIWLLLKIITGLQNFDKDNVASVVTAAEKGGATHVDIACDPELVKLAISLTSCPICVSSVDPAKFPAAVEAGALMVEIGNYDSFYEKGVIFTPEQILSLTKETRRILPSVVLSVTVPHTLSLPDQVKLAESLELEGVDIIQTEGGKCSNPTKSGVLGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGASGVGVGSAVNKLNDVVAMIAEVRSIADSLKTSLPTHTTHEVETHFQ*