AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024054.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024054.01.T01 MTR_5g005200 88.889 144 6 2 1 135 1 143 1.71e-76 223
MsG0580024054.01.T01 MTR_5g025500 42.105 95 55 0 40 134 37 131 1.59e-24 91.7
MsG0580024054.01.T01 MTR_3g053350 50.877 114 11 5 22 131 29 101 1.53e-18 80.9
MsG0580024054.01.T01 MTR_3g055330 41.111 90 51 2 46 134 147 235 1.36e-15 71.6
MsG0580024054.01.T01 MTR_3g055330 41.111 90 51 2 46 134 147 235 1.82e-15 71.6
MsG0580024054.01.T01 MTR_5g018010 40.580 69 40 1 64 132 61 128 4.19e-15 70.1
MsG0580024054.01.T01 MTR_5g018010 37.805 82 50 1 53 134 183 263 2.69e-14 67.8
MsG0580024054.01.T01 MTR_5g018010 40.580 69 40 1 64 132 138 205 1.22e-14 69.3
MsG0580024054.01.T01 MTR_5g018010 37.805 82 50 1 53 134 260 340 6.11e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024054.01.T01 AT2G14880 54.545 143 54 4 1 134 1 141 4.39e-42 136
MsG0580024054.01.T01 AT4G34290 51.064 141 51 3 6 134 10 144 1.67e-36 122
MsG0580024054.01.T01 AT3G03590 52.564 78 37 0 57 134 63 140 2.45e-25 94.0
MsG0580024054.01.T01 AT1G31760 40.594 101 59 1 34 133 8 108 6.61e-25 92.0
MsG0580024054.01.T01 AT2G35605 47.253 91 48 0 43 133 15 105 1.38e-24 91.3
MsG0580024054.01.T01 AT2G14880 56.977 86 30 4 13 96 23 103 4.30e-21 82.0
MsG0580024054.01.T01 AT2G14880 56.977 86 30 4 13 96 23 103 4.30e-21 82.0
MsG0580024054.01.T01 AT4G26810 34.000 100 61 2 34 133 1 95 1.79e-15 67.8
MsG0580024054.01.T01 AT4G26810 34.000 100 61 2 34 133 1 95 1.79e-15 67.8
MsG0580024054.01.T01 AT4G22360 37.624 101 54 3 42 134 173 272 2.11e-15 71.6
MsG0580024054.01.T01 AT1G49520 37.209 86 50 2 47 132 243 324 2.29e-13 65.9
MsG0580024054.01.T01 AT1G49520 32.895 76 50 1 57 132 101 175 2.35e-11 60.1
MsG0580024054.01.T01 AT3G48600 33.036 112 71 2 28 135 2 113 2.47e-13 63.9
MsG0580024054.01.T01 AT3G48600 33.036 112 71 2 28 135 2 113 6.22e-13 63.5
MsG0580024054.01.T01 AT3G19080 35.165 91 56 2 42 132 250 337 8.68e-13 64.3
MsG0580024054.01.T01 AT3G19080 34.211 76 49 1 57 132 115 189 1.37e-11 60.8
MsG0580024054.01.T01 AT3G19080 34.783 92 57 2 42 133 250 338 1.81e-12 63.5
MsG0580024054.01.T01 AT3G19080 33.766 77 50 1 57 133 115 190 2.31e-11 60.5
MsG0580024054.01.T01 AT3G19080 34.783 92 57 2 42 133 250 338 1.85e-12 63.5
MsG0580024054.01.T01 AT3G19080 33.766 77 50 1 57 133 115 190 2.24e-11 60.5
MsG0580024054.01.T01 AT3G19080 34.783 92 57 2 42 133 250 338 1.85e-12 63.5
MsG0580024054.01.T01 AT3G19080 33.766 77 50 1 57 133 115 190 2.24e-11 60.5

Find 62 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATAGTAGATTGGAAATT+TGG 0.150435 5:-329464 None:intergenic
CCCAAATGCTCTTGAGGGCT+TGG 0.201712 5:-329767 None:intergenic
GTGTATGGAACTGTTATATT+TGG 0.267520 5:+330828 MsG0580024054.01.T01:three_prime_UTR
GTGGCCTTTGCCTTCAATTA+AGG 0.272510 5:-330759 None:intergenic
GCTCTTGAGGGCTTGGGTTC+GGG 0.285856 5:-329760 None:intergenic
CCGACGAGGTCTTGCATCTC+AGG 0.309068 5:-329723 None:intergenic
TGCTCTTGAGGGCTTGGGTT+CGG 0.309630 5:-329761 None:intergenic
CCCAAGCCCTCAAGAGCATT+TGG 0.313567 5:+329766 MsG0580024054.01.T01:CDS
GAGCATTTGGGCCCACATTA+AGG 0.313899 5:+329779 MsG0580024054.01.T01:CDS
TTCCCACACCTTCTTCTTTG+CGG 0.351253 5:+329604 MsG0580024054.01.T01:CDS
CCAAATGCTCTTGAGGGCTT+GGG 0.352861 5:-329766 None:intergenic
GGCTTGGGTTCGGGAAATCT+CGG 0.358689 5:-329751 None:intergenic
GTTGATATGCTTGAGATTGC+TGG 0.364505 5:+330718 MsG0580024054.01.T01:CDS
GCCCTCACTTCCTTAATTGA+AGG 0.384410 5:+330749 MsG0580024054.01.T01:CDS
ATCATATGAAGGCCACGTTT+TGG 0.393931 5:+330806 MsG0580024054.01.T01:three_prime_UTR
AACTAAACCTTGAGACTTAG+TGG 0.395134 5:-330778 None:intergenic
CACACCTTCTTCTTTGCGGA+TGG 0.399835 5:+329608 MsG0580024054.01.T01:CDS
TAAGGCTACTACTATGTTGC+AGG 0.405113 5:-330862 None:intergenic
CTCCTCCTCTTCTAACTCTC+AGG 0.422590 5:+329565 MsG0580024054.01.T01:CDS
GCGAGAGTTGAATAGTAGAT+TGG 0.425741 5:-329472 None:intergenic
AAACTGAAGAAGGTATTTGC+AGG 0.431242 5:+330685 MsG0580024054.01.T01:CDS
CCAAGCCCTCAAGAGCATTT+GGG 0.438538 5:+329767 MsG0580024054.01.T01:CDS
AAAGAAGATGGCGGTTTCAA+TGG 0.445972 5:+329521 MsG0580024054.01.T01:exon
GTCTCTCAGCCTCCACCCAC+TGG 0.454767 5:+329660 MsG0580024054.01.T01:CDS
GCTTGGGTTCGGGAAATCTC+GGG 0.463473 5:-329750 None:intergenic
AAAGAAAGAAAGAAAGAAGA+TGG 0.468937 5:+329509 MsG0580024054.01.T01:exon
TAGTACTTCAGGTACAGAAC+AGG 0.480293 5:+330900 MsG0580024054.01.T01:three_prime_UTR
CATTAAGGAACACAATCTTC+AGG 0.486338 5:+329794 MsG0580024054.01.T01:CDS
GCCTTCAATTAAGGAAGTGA+GGG 0.502350 5:-330750 None:intergenic
GTGGGCCCAAATGCTCTTGA+GGG 0.503891 5:-329772 None:intergenic
AGTAGATTGGAAATTTGGAA+TGG 0.519452 5:-329459 None:intergenic
TTCTAACTCTCAGGACTCCA+AGG 0.523841 5:+329574 MsG0580024054.01.T01:CDS
TGTGGGCCCAAATGCTCTTG+AGG 0.532300 5:-329773 None:intergenic
GGAGCCATCCGCAAAGAAGA+AGG 0.536269 5:-329612 None:intergenic
GAAGATTGTGTTCCTTAATG+TGG 0.537334 5:-329791 None:intergenic
TGGAGGCTGAGAGACGGTGG+CGG 0.544798 5:-329652 None:intergenic
AGGAGATGATAATAATAGTC+CGG 0.546560 5:-329547 None:intergenic
CCCACTGGAGGCAAAATTCG+CGG 0.551624 5:+329675 MsG0580024054.01.T01:CDS
TGCCTTCAATTAAGGAAGTG+AGG 0.555494 5:-330751 None:intergenic
CGACGAGGTCTTGCATCTCA+GGG 0.556537 5:-329722 None:intergenic
GTCCTGAGAGTTAGAAGAGG+AGG 0.556709 5:-329567 None:intergenic
AAGATTGTGTTCCTTAATGT+GGG 0.565657 5:-329790 None:intergenic
CGGTGGCGGAAGTAACTGTT+CGG 0.576626 5:-329638 None:intergenic
CTGTGATGAGAAACTGAAGA+AGG 0.578111 5:+330675 MsG0580024054.01.T01:CDS
ATGGCGGTTTCAATGGCTAC+CGG 0.582248 5:+329528 MsG0580024054.01.T01:CDS
GGGTGGAGGCTGAGAGACGG+TGG 0.583952 5:-329655 None:intergenic
GGTGTGGGAAACGCAAACCT+TGG 0.584167 5:-329591 None:intergenic
AACTGAAGAAGGTATTTGCA+GGG 0.589332 5:+330686 MsG0580024054.01.T01:CDS
AGTGGGTGGAGGCTGAGAGA+CGG 0.591395 5:-329658 None:intergenic
ACTTCCTTAATTGAAGGCAA+AGG 0.598604 5:+330755 MsG0580024054.01.T01:exon
GCAAAGGCCACTAAGTCTCA+AGG 0.608526 5:+330771 MsG0580024054.01.T01:three_prime_UTR
AAATCTCGGGTTGGCCGACG+AGG 0.609292 5:-329737 None:intergenic
GGGTTCGGGAAATCTCGGGT+TGG 0.610231 5:-329746 None:intergenic
GAAAGAAAGAAAGAAGATGG+CGG 0.619679 5:+329512 MsG0580024054.01.T01:exon
GGAGTCCTGAGAGTTAGAAG+AGG 0.632652 5:-329570 None:intergenic
TCTCAGCCTCCACCCACTGG+AGG 0.640752 5:+329663 MsG0580024054.01.T01:CDS
CATCCGCAAAGAAGAAGGTG+TGG 0.642641 5:-329607 None:intergenic
ATCCGCAAAGAAGAAGGTGT+GGG 0.644955 5:-329606 None:intergenic
CCTGAGATGCAAGACCTCGT+CGG 0.669771 5:+329723 MsG0580024054.01.T01:CDS
GACGAGGTCTTGCATCTCAG+GGG 0.676658 5:-329721 None:intergenic
GCGGAAGTAACTGTTCGGAG+TGG 0.691914 5:-329633 None:intergenic
CAGTTCCATACACCAAAACG+TGG 0.702843 5:-330818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATTAAA+AGG - Chr5:330986-331005 None:intergenic 0.0%
!!! TTTTAATTATTATTATTATT+AGG + Chr5:330985-331004 MsG0580024054.01.T01:three_prime_UTR 0.0%
!!! ATTATTATTAGGTTTTTTAT+TGG + Chr5:330996-331015 MsG0580024054.01.T01:three_prime_UTR 10.0%
!!! GTGAAATTTTAATTTAAAAA+AGG - Chr5:329860-329879 None:intergenic 10.0%
!! AATAATGAAAAGAATAAACA+AGG - Chr5:329975-329994 None:intergenic 15.0%
!! TAATCTAATTATATGAAACA+TGG - Chr5:330405-330424 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG - Chr5:329888-329907 None:intergenic 15.0%
!!! TTAGTTTTTATATCATATGA+AGG + Chr5:330795-330814 MsG0580024054.01.T01:three_prime_UTR 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG + Chr5:330175-330194 MsG0580024054.01.T01:intron 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG + Chr5:330174-330193 MsG0580024054.01.T01:intron 15.0%
!! AAAAGAATGAAAACTAGATT+TGG - Chr5:330157-330176 None:intergenic 20.0%
!! ATATTATTAGGCACTAATTT+GGG + Chr5:330072-330091 MsG0580024054.01.T01:intron 20.0%
!! CTAACAAAAACAAAAAACTA+AGG - Chr5:330883-330902 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG + Chr5:330060-330079 MsG0580024054.01.T01:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG + Chr5:330071-330090 MsG0580024054.01.T01:intron 20.0%
!! TCAAAATAAAACATGAACAA+TGG - Chr5:330024-330043 None:intergenic 20.0%
! AAAGAAAGAAAGAAAGAAGA+TGG + Chr5:329509-329528 MsG0580024054.01.T01:exon 25.0%
! AACATGGAGTTTAGATTATA+TGG - Chr5:330389-330408 None:intergenic 25.0%
! CATTCAATTTATGGATGATA+CGG - Chr5:330512-330531 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG - Chr5:330055-330074 None:intergenic 25.0%
! TGAATAGTAGATTGGAAATT+TGG - Chr5:329467-329486 None:intergenic 25.0%
!! AACAAATAATTTGTACGGTT+TGG - Chr5:329883-329902 None:intergenic 25.0%
!! ACAAATAATTTGTACGGTTT+GGG - Chr5:329882-329901 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG + Chr5:330361-330380 MsG0580024054.01.T01:intron 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG - Chr5:330204-330223 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG + Chr5:330889-330908 MsG0580024054.01.T01:three_prime_UTR 25.0%
AAATTGGATTCCCATTTAGT+TGG - Chr5:330188-330207 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG - Chr5:329793-329812 None:intergenic 30.0%
ACATGTTAAATATGTTGCTG+GGG + Chr5:331019-331038 MsG0580024054.01.T01:three_prime_UTR 30.0%
AGGAGATGATAATAATAGTC+CGG - Chr5:329550-329569 None:intergenic 30.0%
AGTAGATTGGAAATTTGGAA+TGG - Chr5:329462-329481 None:intergenic 30.0%
ATAAATACGTTCAGCAACTT+TGG + Chr5:330579-330598 MsG0580024054.01.T01:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG + Chr5:330518-330537 MsG0580024054.01.T01:intron 30.0%
GACATGTTAAATATGTTGCT+GGG + Chr5:331018-331037 MsG0580024054.01.T01:three_prime_UTR 30.0%
GTGTATGGAACTGTTATATT+TGG + Chr5:330828-330847 MsG0580024054.01.T01:three_prime_UTR 30.0%
TATCCTCAAGAAAAAGAGAA+AGG - Chr5:329832-329851 None:intergenic 30.0%
TCCATAAATTGAATGTTCTC+TGG + Chr5:330517-330536 MsG0580024054.01.T01:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG + Chr5:330091-330110 MsG0580024054.01.T01:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG + Chr5:330090-330109 MsG0580024054.01.T01:intron 30.0%
! TTTATAATGGTTGATGCTGA+TGG + Chr5:330342-330361 MsG0580024054.01.T01:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG + Chr5:330038-330057 MsG0580024054.01.T01:intron 30.0%
AAAGCAGAGTTAGTACTTGA+TGG - Chr5:330315-330334 None:intergenic 35.0%
AACTAAACCTTGAGACTTAG+TGG - Chr5:330781-330800 None:intergenic 35.0%
ACTTCCTTAATTGAAGGCAA+AGG + Chr5:330755-330774 MsG0580024054.01.T01:exon 35.0%
ATGTAGAACAAGTGCAAACA+AGG - Chr5:330255-330274 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG + Chr5:329794-329813 MsG0580024054.01.T01:CDS 35.0%
CCCAGAGAACATTCAATTTA+TGG - Chr5:330521-330540 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG - Chr5:330573-330592 None:intergenic 35.0%
GAAAGAAAGAAAGAAGATGG+CGG + Chr5:329512-329531 MsG0580024054.01.T01:exon 35.0%
GAAGATTGTGTTCCTTAATG+TGG - Chr5:329794-329813 None:intergenic 35.0%
GCATCAACCATTATAAAACG+CGG - Chr5:330339-330358 None:intergenic 35.0%
GGAATAATCGGTTATTATGG+GGG + Chr5:330093-330112 MsG0580024054.01.T01:intron 35.0%
GGACATGTTAAATATGTTGC+TGG + Chr5:331017-331036 MsG0580024054.01.T01:three_prime_UTR 35.0%
GGCACTAATTTGGGAATAAT+CGG + Chr5:330081-330100 MsG0580024054.01.T01:intron 35.0%
GGGAATAATCGGTTATTATG+GGG + Chr5:330092-330111 MsG0580024054.01.T01:intron 35.0%
TAAACTGCACAGATTCAGAA+TGG + Chr5:329917-329936 MsG0580024054.01.T01:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG + Chr5:330108-330127 MsG0580024054.01.T01:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG + Chr5:330107-330126 MsG0580024054.01.T01:intron 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG - Chr5:330654-330673 None:intergenic 35.0%
! GGAAGATAGCATTGGATTAA+TGG - Chr5:330552-330571 None:intergenic 35.0%
! TCTCCTTTCTCTTTTTCTTG+AGG + Chr5:329826-329845 MsG0580024054.01.T01:intron 35.0%
! TGCTTTTCCGCGTTTTATAA+TGG + Chr5:330329-330348 MsG0580024054.01.T01:intron 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG + Chr5:330685-330704 MsG0580024054.01.T01:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG + Chr5:330686-330705 MsG0580024054.01.T01:CDS 35.0%
!! CAACTTTGGTAACGTTTGAT+TGG + Chr5:330593-330612 MsG0580024054.01.T01:intron 35.0%
!!! ATCTCAGGGGAGATTTTTTT+GGG - Chr5:329711-329730 None:intergenic 35.0%
AATTAACCTGTCTGTCTGTC+TGG + Chr5:330289-330308 MsG0580024054.01.T01:intron 40.0%
CTGTGATGAGAAACTGAAGA+AGG + Chr5:330675-330694 MsG0580024054.01.T01:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG - Chr5:330753-330772 None:intergenic 40.0%
GCGAGAGTTGAATAGTAGAT+TGG - Chr5:329475-329494 None:intergenic 40.0%
GTCTGTACAAGAGTAGTTGT+AGG - Chr5:330463-330482 None:intergenic 40.0%
GTTGATATGCTTGAGATTGC+TGG + Chr5:330718-330737 MsG0580024054.01.T01:CDS 40.0%
TAAGGCTACTACTATGTTGC+AGG - Chr5:330865-330884 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG + Chr5:330900-330919 MsG0580024054.01.T01:three_prime_UTR 40.0%
TGAATGCAGGAAGATAGCAT+TGG - Chr5:330560-330579 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG - Chr5:330754-330773 None:intergenic 40.0%
TTCAGAACCCTGAGAAAAAG+AGG + Chr5:330644-330663 MsG0580024054.01.T01:intron 40.0%
! AAAGAAGATGGCGGTTTCAA+TGG + Chr5:329521-329540 MsG0580024054.01.T01:exon 40.0%
! ATCATATGAAGGCCACGTTT+TGG + Chr5:330806-330825 MsG0580024054.01.T01:three_prime_UTR 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG - Chr5:330655-330674 None:intergenic 40.0%
!!! CATCTCAGGGGAGATTTTTT+TGG - Chr5:329712-329731 None:intergenic 40.0%
CAGTTCCATACACCAAAACG+TGG - Chr5:330821-330840 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG + Chr5:330749-330768 MsG0580024054.01.T01:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG - Chr5:330762-330781 None:intergenic 45.0%
TTCCCACACCTTCTTCTTTG+CGG + Chr5:329604-329623 MsG0580024054.01.T01:CDS 45.0%
TTCTAACTCTCAGGACTCCA+AGG + Chr5:329574-329593 MsG0580024054.01.T01:CDS 45.0%
! ATCCGCAAAGAAGAAGGTGT+GGG - Chr5:329609-329628 None:intergenic 45.0%
ATGGCGGTTTCAATGGCTAC+CGG + Chr5:329528-329547 MsG0580024054.01.T01:CDS 50.0%
CACACCTTCTTCTTTGCGGA+TGG + Chr5:329608-329627 MsG0580024054.01.T01:CDS 50.0%
CATCCGCAAAGAAGAAGGTG+TGG - Chr5:329610-329629 None:intergenic 50.0%
CCAAATGCTCTTGAGGGCTT+GGG - Chr5:329769-329788 None:intergenic 50.0%
CTCCTCCTCTTCTAACTCTC+AGG + Chr5:329565-329584 MsG0580024054.01.T01:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG + Chr5:329779-329798 MsG0580024054.01.T01:CDS 50.0%
GCAAAGGCCACTAAGTCTCA+AGG + Chr5:330771-330790 MsG0580024054.01.T01:three_prime_UTR 50.0%
GGAGTCCTGAGAGTTAGAAG+AGG - Chr5:329573-329592 None:intergenic 50.0%
GGCTGCAGCAGAAAATTGTG+AGG + Chr5:330129-330148 MsG0580024054.01.T01:intron 50.0%
GTCCTGAGAGTTAGAAGAGG+AGG - Chr5:329570-329589 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG + Chr5:329767-329786 MsG0580024054.01.T01:CDS 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG + Chr5:330813-330832 MsG0580024054.01.T01:three_prime_UTR 50.0%
CCCAAATGCTCTTGAGGGCT+TGG - Chr5:329770-329789 None:intergenic 55.0%
CCCACTGGAGGCAAAATTCG+CGG + Chr5:329675-329694 MsG0580024054.01.T01:CDS 55.0%
CCTGAGATGCAAGACCTCGT+CGG + Chr5:329723-329742 MsG0580024054.01.T01:CDS 55.0%
CGACGAGGTCTTGCATCTCA+GGG - Chr5:329725-329744 None:intergenic 55.0%
GACGAGGTCTTGCATCTCAG+GGG - Chr5:329724-329743 None:intergenic 55.0%
GCGGAAGTAACTGTTCGGAG+TGG - Chr5:329636-329655 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG - Chr5:329753-329772 None:intergenic 55.0%
GGAGCCATCCGCAAAGAAGA+AGG - Chr5:329615-329634 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG - Chr5:329754-329773 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG - Chr5:329594-329613 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG - Chr5:329775-329794 None:intergenic 55.0%
TGATGGCCAGACAGACAGAC+AGG - Chr5:330298-330317 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG - Chr5:329764-329783 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG - Chr5:329776-329795 None:intergenic 55.0%
! ACCGCGAATTTTGCCTCCAG+TGG - Chr5:329679-329698 None:intergenic 55.0%
! ATTTTGCCTCCAGTGGGTGG+AGG - Chr5:329672-329691 None:intergenic 55.0%
! CCGCGAATTTTGCCTCCAGT+GGG - Chr5:329678-329697 None:intergenic 55.0%
! CGAATTTTGCCTCCAGTGGG+TGG - Chr5:329675-329694 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG + Chr5:329766-329785 MsG0580024054.01.T01:CDS 55.0%
!! CGGTGGCGGAAGTAACTGTT+CGG - Chr5:329641-329660 None:intergenic 55.0%
AGTGGGTGGAGGCTGAGAGA+CGG - Chr5:329661-329680 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+AGG - Chr5:329726-329745 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG - Chr5:329763-329782 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG - Chr5:329749-329768 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG - Chr5:329740-329759 None:intergenic 60.0%
GTCTCTCAGCCTCCACCCAC+TGG + Chr5:329660-329679 MsG0580024054.01.T01:CDS 65.0%
TCTCAGCCTCCACCCACTGG+AGG + Chr5:329663-329682 MsG0580024054.01.T01:CDS 65.0%
TGGAGGCTGAGAGACGGTGG+CGG - Chr5:329655-329674 None:intergenic 65.0%
GGGTGGAGGCTGAGAGACGG+TGG - Chr5:329658-329677 None:intergenic 70.0%
GGGGGGGGGGGGGATAGTGT+TGG + Chr5:329403-329422 MsG0580024054.01.T01:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 329403 331038 329403 ID=MsG0580024054.01;Name=MsG0580024054.01
Chr5 mRNA 329403 331038 329403 ID=MsG0580024054.01.T01;Parent=MsG0580024054.01;Name=MsG0580024054.01.T01;_AED=0.26;_eAED=0.26;_QI=125|1|1|1|0|0|2|270|135
Chr5 exon 329403 329815 329403 ID=MsG0580024054.01.T01:exon:19;Parent=MsG0580024054.01.T01
Chr5 exon 330649 331038 330649 ID=MsG0580024054.01.T01:exon:20;Parent=MsG0580024054.01.T01
Chr5 five_prime_UTR 329403 329527 329403 ID=MsG0580024054.01.T01:five_prime_utr;Parent=MsG0580024054.01.T01
Chr5 CDS 329528 329815 329528 ID=MsG0580024054.01.T01:cds;Parent=MsG0580024054.01.T01
Chr5 CDS 330649 330768 330649 ID=MsG0580024054.01.T01:cds;Parent=MsG0580024054.01.T01
Chr5 three_prime_UTR 330769 331038 330769 ID=MsG0580024054.01.T01:three_prime_utr;Parent=MsG0580024054.01.T01
Gene Sequence

>MsG0580024054.01.T01

ATGGCGGTTTCAATGGCTACCGGACTATTATTATCATCTCCTCCTCTTCTAACTCTCAGGACTCCAAGGTTTGCGTTTCCCACACCTTCTTCTTTGCGGATGGCTCCACTCCGAACAGTTACTTCCGCCACCGTCTCTCAGCCTCCACCCACTGGAGGCAAAATTCGCGGTATTATGAAACCCAAAAAAATCTCCCCTGAGATGCAAGACCTCGTCGGCCAACCCGAGATTTCCCGAACCCAAGCCCTCAAGAGCATTTGGGCCCACATTAAGGAACACAATCTTCAGAACCCTGAGAAAAAGAGGCTTATTCGCTGTGATGAGAAACTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGATATGCTTGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAATTGA

Protein sequence

>MsG0580024054.01.T01

MAVSMATGLLLSSPPLLTLRTPRFAFPTPSSLRMAPLRTVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFLN*