AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005137.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005137.01.T01 MTR_1g094160 54.745 274 30 7 16 263 2 207 8.76e-76 229
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005137.01.T01 AT3G10405 39.891 183 58 3 102 263 57 208 1.98e-37 131

Find 53 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGAATATGTTTCTTATC+TGG 0.245819 1:-87469929 MsG0180005137.01.T01:CDS
GAACTTATTAGAGTTGAAAA+TGG 0.264482 1:+87472150 None:intergenic
CTAGGATCCTCAACATTTAT+AGG 0.279112 1:+87471790 None:intergenic
GAATCTTCAACTAACTCATT+AGG 0.348263 1:+87471823 None:intergenic
GTTGACAACCGTCTAAGTTT+TGG 0.366626 1:+87471578 None:intergenic
TCAACTCTAATAAGTTCAAC+TGG 0.394168 1:-87472144 MsG0180005137.01.T01:CDS
TCTTCTATCAACTCATATAG+TGG 0.394763 1:+87469629 None:intergenic
GTTGATGCTTTCCCTGAAAC+TGG 0.395368 1:-87469878 MsG0180005137.01.T01:intron
TTTGCAGGCCTTGTTGTTGT+TGG 0.403165 1:-87471517 MsG0180005137.01.T01:CDS
AATTTGAGCACCAACTTTCA+AGG 0.408723 1:+87471882 None:intergenic
TGGAACATGAAGGAGGCATT+CGG 0.409372 1:+87472212 None:intergenic
TTGCAGGCCTTGTTGTTGTT+GGG 0.410312 1:-87471516 MsG0180005137.01.T01:CDS
AAGAAGCAAATGATGTCATT+TGG 0.420703 1:-87472277 MsG0180005137.01.T01:CDS
TAGTGGTTTGTTAGCACTGT+TGG 0.421898 1:+87469646 None:intergenic
TACTCTCATTCCTTGAAAGT+TGG 0.437540 1:-87471892 MsG0180005137.01.T01:CDS
CTTACAGGTGGACCATATCT+AGG 0.443659 1:+87471772 None:intergenic
CAAATGATGTCATTTGGCCT+TGG 0.446292 1:-87472271 MsG0180005137.01.T01:CDS
TTGAAAATGGAACAAGAAGA+AGG 0.451288 1:+87472163 None:intergenic
GGAACATGAAGGAGGCATTC+GGG 0.451596 1:+87472213 None:intergenic
TGTTATTTGGCTTATCATGC+AGG 0.454800 1:-87471850 MsG0180005137.01.T01:CDS
AGTGGTTTGTTAGCACTGTT+GGG 0.472960 1:+87469647 None:intergenic
AAACCTTCAGAGGATGCTCT+TGG 0.490604 1:+87472118 None:intergenic
CCAGATAAGAAACATATTCG+TGG 0.493847 1:+87469929 None:intergenic
CATTGAAACATGGGAAAACA+TGG 0.494004 1:+87472192 None:intergenic
ACTAAAACCAGCCGCGTTTG+CGG 0.496458 1:-87469678 MsG0180005137.01.T01:CDS
ACAAGAGCCGCAAACGCGGC+TGG 0.501981 1:+87469671 None:intergenic
ATTTGTTCCTATAAATGTTG+AGG 0.506384 1:-87471797 MsG0180005137.01.T01:CDS
GAATCTCTACGAACTGCAGC+TGG 0.510882 1:-87472249 MsG0180005137.01.T01:CDS
ATTCATACGTAGCTAAGTGC+AGG 0.510914 1:-87471553 MsG0180005137.01.T01:CDS
CTATCTATCACATGGAAACA+TGG 0.525031 1:-87472078 MsG0180005137.01.T01:intron
CACGGGAGATCATGAGATGT+TGG 0.526608 1:-87469603 MsG0180005137.01.T01:CDS
ATGTTCAATCAATCTAACTT+AGG 0.546673 1:-87471602 MsG0180005137.01.T01:CDS
CAAATAAGACAAACCTTCAG+AGG 0.558257 1:+87472108 None:intergenic
ACTTAGGACCAAAACTTAGA+CGG 0.558909 1:-87471586 MsG0180005137.01.T01:CDS
AATGTTGAGGATCCTAGATA+TGG 0.565843 1:-87471784 MsG0180005137.01.T01:CDS
TGCAGTTCGTAGAGATTCCA+AGG 0.572362 1:+87472254 None:intergenic
AGTTAGAGGGTGAGTTCCTG+AGG 0.573379 1:-87470955 MsG0180005137.01.T01:intron
AGGAGAAGACATTGAAACAT+GGG 0.575410 1:+87472183 None:intergenic
TGTTTCTTATCTGGTTTAAG+CGG 0.583734 1:-87469920 MsG0180005137.01.T01:CDS
ACTCCAAGAGCATCCTCTGA+AGG 0.589756 1:-87472121 MsG0180005137.01.T01:CDS
TGAGTTGATAGAAGAAATCA+CGG 0.591951 1:-87469621 MsG0180005137.01.T01:CDS
CTTATCTGGTTTAAGCGGAG+AGG 0.593073 1:-87469915 MsG0180005137.01.T01:CDS
TTCATACGTAGCTAAGTGCA+GGG 0.593112 1:-87471552 MsG0180005137.01.T01:CDS
AAGGAGAAGACATTGAAACA+TGG 0.593929 1:+87472182 None:intergenic
GGAGATCATGAGATGTTGGT+AGG 0.606238 1:-87469599 MsG0180005137.01.T01:CDS
TTCAAATCCCAACAACAACA+AGG 0.612190 1:+87471509 None:intergenic
GGGAACAAGAGCCGCAAACG+CGG 0.631180 1:+87469667 None:intergenic
GAGTGTATCTATCTATCACA+TGG 0.633531 1:-87472086 MsG0180005137.01.T01:CDS
TGGGAAAACATGGAACATGA+AGG 0.642942 1:+87472202 None:intergenic
ACTTGTCTATCTGCAATGCA+AGG 0.665324 1:+87469957 None:intergenic
GAAAACATGGAACATGAAGG+AGG 0.688873 1:+87472205 None:intergenic
TCATACGTAGCTAAGTGCAG+GGG 0.693211 1:-87471551 MsG0180005137.01.T01:CDS
GAGTTGATAGAAGAAATCAC+GGG 0.709286 1:-87469620 MsG0180005137.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCATCAATTATTT+TGG + Chr1:87471396-87471415 None:intergenic 10.0%
!! ATTTCTAAATGATTTGATTA+AGG + Chr1:87470528-87470547 None:intergenic 15.0%
!! CTTATAGTAAATTACAAAAT+GGG - Chr1:87470773-87470792 MsG0180005137.01.T01:intron 15.0%
!!! ATTGAATTTTTTACACTATA+AGG - Chr1:87470685-87470704 MsG0180005137.01.T01:intron 15.0%
!!! GTTTTCTTATATCAAATTTA+TGG - Chr1:87471717-87471736 MsG0180005137.01.T01:intron 15.0%
!! AATCTTATAAAGAAATGTTG+TGG - Chr1:87470466-87470485 MsG0180005137.01.T01:intron 20.0%
!! GCTTATAGTAAATTACAAAA+TGG - Chr1:87470772-87470791 MsG0180005137.01.T01:intron 20.0%
!! TAAATTACAAAATGGGATAT+AGG - Chr1:87470780-87470799 MsG0180005137.01.T01:intron 20.0%
!! TGCACTAACAAATATATAAT+CGG - Chr1:87471574-87471593 MsG0180005137.01.T01:CDS 20.0%
!! TTAAACTATTTATCCAAACA+TGG - Chr1:87469962-87469981 MsG0180005137.01.T01:CDS 20.0%
!!! AAAGATTTTTTCCACTTTAA+TGG - Chr1:87471098-87471117 MsG0180005137.01.T01:intron 20.0%
!!! ACTATTATACCTTCAAATTT+TGG + Chr1:87471364-87471383 None:intergenic 20.0%
!!! TTTCGTTGTTTTTTTAAATG+CGG + Chr1:87471307-87471326 None:intergenic 20.0%
! AATATGTTACTAATGTTCCA+AGG - Chr1:87471834-87471853 MsG0180005137.01.T01:CDS 25.0%
! ACATTTGGAAAATAATACAG+TGG + Chr1:87470870-87470889 None:intergenic 25.0%
! AGATAAAATACGAACATGAA+AGG + Chr1:87470990-87471009 None:intergenic 25.0%
! ATGTTCAATCAATCTAACTT+AGG - Chr1:87470297-87470316 MsG0180005137.01.T01:intron 25.0%
! ATTTGTTCCTATAAATGTTG+AGG - Chr1:87470102-87470121 MsG0180005137.01.T01:intron 25.0%
! GAACATCTTTCACAAAAAAA+AGG + Chr1:87470283-87470302 None:intergenic 25.0%
! GAACTTATTAGAGTTGAAAA+TGG + Chr1:87469752-87469771 None:intergenic 25.0%
! GGTCATGATTAATTGATTAT+AGG - Chr1:87471695-87471714 MsG0180005137.01.T01:intron 25.0%
! TCAATGTTAACAAACCAAAA+GGG + Chr1:87472102-87472121 None:intergenic 25.0%
! TGTAGCTTATTGTATTATCT+AGG + Chr1:87471182-87471201 None:intergenic 25.0%
! TTCAATGTTAACAAACCAAA+AGG + Chr1:87472103-87472122 None:intergenic 25.0%
!! AGTTGCTCTATCATAATTTT+GGG + Chr1:87470662-87470681 None:intergenic 25.0%
!! ATTTGAAATTTGTTCTATGC+AGG - Chr1:87472198-87472217 MsG0180005137.01.T01:CDS 25.0%
!!! AGATTTTTTATACCAGTTTC+AGG + Chr1:87472036-87472055 None:intergenic 25.0%
!!! AGTTTTTTGAAAGAGTTAGA+GGG - Chr1:87470931-87470950 MsG0180005137.01.T01:intron 25.0%
!!! GATTTTTTATACCAGTTTCA+GGG + Chr1:87472035-87472054 None:intergenic 25.0%
AAAAACTAACCATGACTTAC+AGG + Chr1:87470145-87470164 None:intergenic 30.0%
AACATATTGCATTGCATTGT+AGG - Chr1:87471429-87471448 MsG0180005137.01.T01:intron 30.0%
AAGAAGCAAATGATGTCATT+TGG - Chr1:87469622-87469641 MsG0180005137.01.T01:CDS 30.0%
AATCTGTGACCAAAATTTGA+AGG - Chr1:87471352-87471371 MsG0180005137.01.T01:intron 30.0%
ACTATTTATCCAAACATGGA+TGG - Chr1:87469966-87469985 MsG0180005137.01.T01:CDS 30.0%
ATGTTACAATTACAGCATGA+AGG - Chr1:87470724-87470743 MsG0180005137.01.T01:intron 30.0%
ATTGCTACAAAGTTCTTGAT+TGG + Chr1:87471793-87471812 None:intergenic 30.0%
ATTTGCATGAATTGTTAAGC+AGG - Chr1:87471671-87471690 MsG0180005137.01.T01:intron 30.0%
CTCAAAATGCATATAAAGTG+AGG + Chr1:87470257-87470276 None:intergenic 30.0%
GAATCTTCAACTAACTCATT+AGG + Chr1:87470079-87470098 None:intergenic 30.0%
GATTATCATATCCTATTGCA+TGG + Chr1:87470450-87470469 None:intergenic 30.0%
TCAACTCTAATAAGTTCAAC+TGG - Chr1:87469755-87469774 MsG0180005137.01.T01:intron 30.0%
TCTTCTATCAACTCATATAG+TGG + Chr1:87472273-87472292 None:intergenic 30.0%
TTGAAAATGGAACAAGAAGA+AGG + Chr1:87469739-87469758 None:intergenic 30.0%
! AATAAGATGTTTGTTACCTC+AGG + Chr1:87470963-87470982 None:intergenic 30.0%
! ACAATCTTTTGCCATTAAAG+TGG + Chr1:87471112-87471131 None:intergenic 30.0%
! AGGATTTTACTCATTGATCT+TGG + Chr1:87471018-87471037 None:intergenic 30.0%
! GAGTTGCTCTATCATAATTT+TGG + Chr1:87470663-87470682 None:intergenic 30.0%
! TCTTTGTTTATTCAGACTGT+TGG + Chr1:87471083-87471102 None:intergenic 30.0%
! TGAAGCAGATGAACATTTTA+AGG - Chr1:87470409-87470428 MsG0180005137.01.T01:intron 30.0%
! TGTTTCTTATCTGGTTTAAG+CGG - Chr1:87471979-87471998 MsG0180005137.01.T01:intron 30.0%
!! TCAAATTTTGGTCACAGATT+GGG + Chr1:87471352-87471371 None:intergenic 30.0%
!! TGAGTTGATAGAAGAAATCA+CGG - Chr1:87472278-87472297 MsG0180005137.01.T01:CDS 30.0%
!! TTCAAATTTTGGTCACAGAT+TGG + Chr1:87471353-87471372 None:intergenic 30.0%
!! TTTTATCGATTATGCCCTTT+TGG - Chr1:87472085-87472104 MsG0180005137.01.T01:CDS 30.0%
!!! CAGTTTTTTGAAAGAGTTAG+AGG - Chr1:87470930-87470949 MsG0180005137.01.T01:intron 30.0%
AAATTCATGAACAGATGGAG+AGG + Chr1:87471547-87471566 None:intergenic 35.0%
AACACAAGAGAGTTTAGAAG+AGG - Chr1:87471507-87471526 MsG0180005137.01.T01:CDS 35.0%
AACGGAATACAAAAGAGAGA+TGG + Chr1:87470573-87470592 None:intergenic 35.0%
AACTGCTGTCAAAAATCACA+AGG + Chr1:87471632-87471651 None:intergenic 35.0%
AAGGAGAAGACATTGAAACA+TGG + Chr1:87469720-87469739 None:intergenic 35.0%
AATGTTGAGGATCCTAGATA+TGG - Chr1:87470115-87470134 MsG0180005137.01.T01:intron 35.0%
AATTCATGAACAGATGGAGA+GGG + Chr1:87471546-87471565 None:intergenic 35.0%
AATTTGAGCACCAACTTTCA+AGG + Chr1:87470020-87470039 None:intergenic 35.0%
ACTGCTGTCAAAAATCACAA+GGG + Chr1:87471631-87471650 None:intergenic 35.0%
ACTTAGGACCAAAACTTAGA+CGG - Chr1:87470313-87470332 MsG0180005137.01.T01:intron 35.0%
ACTTCTGCAGAAATCTCATA+TGG - Chr1:87470219-87470238 MsG0180005137.01.T01:intron 35.0%
AGAGCAATGATTGATCAGAA+TGG + Chr1:87470611-87470630 None:intergenic 35.0%
AGGAGAAGACATTGAAACAT+GGG + Chr1:87469719-87469738 None:intergenic 35.0%
ATATCCTATTGCATGGATGA+TGG + Chr1:87470443-87470462 None:intergenic 35.0%
ATTACCATCATCCATGCAAT+AGG - Chr1:87470436-87470455 MsG0180005137.01.T01:intron 35.0%
CAAATAAGACAAACCTTCAG+AGG + Chr1:87469794-87469813 None:intergenic 35.0%
CATTGAAACATGGGAAAACA+TGG + Chr1:87469710-87469729 None:intergenic 35.0%
CCACGAATATGTTTCTTATC+TGG - Chr1:87471970-87471989 MsG0180005137.01.T01:intron 35.0%
CCAGATAAGAAACATATTCG+TGG + Chr1:87471973-87471992 None:intergenic 35.0%
CCATCTGTTCATGAATTTGT+AGG - Chr1:87471549-87471568 MsG0180005137.01.T01:CDS 35.0%
CCTACAAATTCATGAACAGA+TGG + Chr1:87471552-87471571 None:intergenic 35.0%
CTACGATTGAATGACACATT+TGG + Chr1:87470885-87470904 None:intergenic 35.0%
CTAGGATCCTCAACATTTAT+AGG + Chr1:87470112-87470131 None:intergenic 35.0%
CTATCTATCACATGGAAACA+TGG - Chr1:87469821-87469840 MsG0180005137.01.T01:intron 35.0%
CTTCTGCAGAAATCTCATAT+GGG - Chr1:87470220-87470239 MsG0180005137.01.T01:intron 35.0%
GAGTAAAATCCTATTCAGCT+GGG - Chr1:87471026-87471045 MsG0180005137.01.T01:intron 35.0%
GAGTGTATCTATCTATCACA+TGG - Chr1:87469813-87469832 MsG0180005137.01.T01:intron 35.0%
TACTCTCATTCCTTGAAAGT+TGG - Chr1:87470007-87470026 MsG0180005137.01.T01:intron 35.0%
TCATAGATTGAAAGACGTAG+TGG + Chr1:87471147-87471166 None:intergenic 35.0%
TGAGTAAAATCCTATTCAGC+TGG - Chr1:87471025-87471044 MsG0180005137.01.T01:intron 35.0%
TGGACACACACTTAATTCAA+CGG + Chr1:87470591-87470610 None:intergenic 35.0%
TTCAAATCCCAACAACAACA+AGG + Chr1:87470393-87470412 None:intergenic 35.0%
TTCAGCTTATTTCCATGAGT+TGG - Chr1:87469867-87469886 MsG0180005137.01.T01:intron 35.0%
TTCATAAGTGATCCAACTCA+TGG + Chr1:87469882-87469901 None:intergenic 35.0%
TTCTGCAGAAATCTCATATG+GGG - Chr1:87470221-87470240 MsG0180005137.01.T01:intron 35.0%
! TGTTATTTGGCTTATCATGC+AGG - Chr1:87470049-87470068 MsG0180005137.01.T01:intron 35.0%
!! CAAATTTTGGTCACAGATTG+GGG + Chr1:87471351-87471370 None:intergenic 35.0%
!! GAGTTGATAGAAGAAATCAC+GGG - Chr1:87472279-87472298 MsG0180005137.01.T01:CDS 35.0%
!!! GGGGTTTCTTTTTATTTTGC+AGG - Chr1:87470367-87470386 MsG0180005137.01.T01:intron 35.0%
AACTAACCATGACTTACAGG+TGG + Chr1:87470142-87470161 None:intergenic 40.0%
AAGACGTAGTGGTTATGCAT+CGG + Chr1:87471136-87471155 None:intergenic 40.0%
ACTTGTCTATCTGCAATGCA+AGG + Chr1:87471945-87471964 None:intergenic 40.0%
AGAGAGTTTAGAAGAGGTCA+AGG - Chr1:87471513-87471532 MsG0180005137.01.T01:CDS 40.0%
AGCATTGTGACCCACTAAAA+AGG + Chr1:87471860-87471879 None:intergenic 40.0%
ATTCATACGTAGCTAAGTGC+AGG - Chr1:87470346-87470365 MsG0180005137.01.T01:intron 40.0%
CAAAAGAGAGATGGAGGAAA+AGG + Chr1:87470564-87470583 None:intergenic 40.0%
GAAAACATGGAACATGAAGG+AGG + Chr1:87469697-87469716 None:intergenic 40.0%
GGAATACAAAAGAGAGATGG+AGG + Chr1:87470570-87470589 None:intergenic 40.0%
GTAGGTCATCTATTGTACCA+AGG - Chr1:87471447-87471466 MsG0180005137.01.T01:intron 40.0%
TCTGCAGAAATCTCATATGG+GGG - Chr1:87470222-87470241 MsG0180005137.01.T01:intron 40.0%
TGCATGAATTGTTAAGCAGG+TGG - Chr1:87471674-87471693 MsG0180005137.01.T01:intron 40.0%
TGGGAAAACATGGAACATGA+AGG + Chr1:87469700-87469719 None:intergenic 40.0%
TTCATACGTAGCTAAGTGCA+GGG - Chr1:87470347-87470366 MsG0180005137.01.T01:intron 40.0%
! ATGTTCCAAGGCCTTTTTAG+TGG - Chr1:87471846-87471865 MsG0180005137.01.T01:CDS 40.0%
! CAAATGATGTCATTTGGCCT+TGG - Chr1:87469628-87469647 MsG0180005137.01.T01:CDS 40.0%
! GTTGACAACCGTCTAAGTTT+TGG + Chr1:87470324-87470343 None:intergenic 40.0%
!! AGTGGTTTGTTAGCACTGTT+GGG + Chr1:87472255-87472274 None:intergenic 40.0%
!! TAGTGGTTTGTTAGCACTGT+TGG + Chr1:87472256-87472275 None:intergenic 40.0%
!! TGTTCCAAGGCCTTTTTAGT+GGG - Chr1:87471847-87471866 MsG0180005137.01.T01:CDS 40.0%
AAACCTTCAGAGGATGCTCT+TGG + Chr1:87469784-87469803 None:intergenic 45.0%
AATCCTATTCAGCTGGGAGA+AGG - Chr1:87471032-87471051 MsG0180005137.01.T01:intron 45.0%
ACATGCTTACGCGTTCTCTT+TGG - Chr1:87471470-87471489 MsG0180005137.01.T01:intron 45.0%
ATCCTATTCAGCTGGGAGAA+GGG - Chr1:87471033-87471052 MsG0180005137.01.T01:intron 45.0%
CATGCTTACGCGTTCTCTTT+GGG - Chr1:87471471-87471490 MsG0180005137.01.T01:intron 45.0%
CTTACAGGTGGACCATATCT+AGG + Chr1:87470130-87470149 None:intergenic 45.0%
GCAACAAGACCATCCATGTT+TGG + Chr1:87469978-87469997 None:intergenic 45.0%
GGAGATCATGAGATGTTGGT+AGG - Chr1:87472300-87472319 MsG0180005137.01.T01:CDS 45.0%
GTTGATGCTTTCCCTGAAAC+TGG - Chr1:87472021-87472040 MsG0180005137.01.T01:intron 45.0%
TATGGTCCACCTGTAAGTCA+TGG - Chr1:87470133-87470152 MsG0180005137.01.T01:intron 45.0%
TCATACGTAGCTAAGTGCAG+GGG - Chr1:87470348-87470367 MsG0180005137.01.T01:intron 45.0%
TGCAGTTCGTAGAGATTCCA+AGG + Chr1:87469648-87469667 None:intergenic 45.0%
! CTTATCTGGTTTAAGCGGAG+AGG - Chr1:87471984-87472003 MsG0180005137.01.T01:intron 45.0%
!! TGGAACATGAAGGAGGCATT+CGG + Chr1:87469690-87469709 None:intergenic 45.0%
!! TTGCAGGCCTTGTTGTTGTT+GGG - Chr1:87470383-87470402 MsG0180005137.01.T01:intron 45.0%
!! TTTGCAGGCCTTGTTGTTGT+TGG - Chr1:87470382-87470401 MsG0180005137.01.T01:intron 45.0%
!!! AATTAATATTTTTTTAAGTT+TGG - Chr1:87472128-87472147 MsG0180005137.01.T01:CDS 5.0%
!!! AATTTTATTAAAATGTTATT+TGG - Chr1:87470036-87470055 MsG0180005137.01.T01:intron 5.0%
ACTAAAACCAGCCGCGTTTG+CGG - Chr1:87472221-87472240 MsG0180005137.01.T01:CDS 50.0%
AGAACGCGTAAGCATGTCCT+TGG + Chr1:87471467-87471486 None:intergenic 50.0%
AGTTAGAGGGTGAGTTCCTG+AGG - Chr1:87470944-87470963 MsG0180005137.01.T01:intron 50.0%
CACGGGAGATCATGAGATGT+TGG - Chr1:87472296-87472315 MsG0180005137.01.T01:CDS 50.0%
GAATCTCTACGAACTGCAGC+TGG - Chr1:87469650-87469669 MsG0180005137.01.T01:CDS 50.0%
GTGACCCACTAAAAAGGCCT+TGG + Chr1:87471854-87471873 None:intergenic 50.0%
!! ACTCCAAGAGCATCCTCTGA+AGG - Chr1:87469778-87469797 MsG0180005137.01.T01:intron 50.0%
!! GGAACATGAAGGAGGCATTC+GGG + Chr1:87469689-87469708 None:intergenic 50.0%
CTCCCTTCTCCCAGCTGAAT+AGG + Chr1:87471038-87471057 None:intergenic 55.0%
! GGAGGAAAAGGCACAGCTGA+AGG + Chr1:87470552-87470571 None:intergenic 55.0%
GGGAACAAGAGCCGCAAACG+CGG + Chr1:87472235-87472254 None:intergenic 60.0%
ACAAGAGCCGCAAACGCGGC+TGG + Chr1:87472231-87472250 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87469586 87472335 87469586 ID=MsG0180005137.01;Name=MsG0180005137.01
Chr1 mRNA 87469586 87472335 87469586 ID=MsG0180005137.01.T01;Parent=MsG0180005137.01;Name=MsG0180005137.01.T01;_AED=0.50;_eAED=0.60;_QI=0|0.4|0.16|1|0.2|0.16|6|0|266
Chr1 exon 87472079 87472335 87472079 ID=MsG0180005137.01.T01:exon:47670;Parent=MsG0180005137.01.T01
Chr1 exon 87471777 87471918 87471777 ID=MsG0180005137.01.T01:exon:47669;Parent=MsG0180005137.01.T01
Chr1 exon 87471491 87471624 87471491 ID=MsG0180005137.01.T01:exon:47668;Parent=MsG0180005137.01.T01
Chr1 exon 87470956 87470997 87470956 ID=MsG0180005137.01.T01:exon:47667;Parent=MsG0180005137.01.T01
Chr1 exon 87469879 87469988 87469879 ID=MsG0180005137.01.T01:exon:47666;Parent=MsG0180005137.01.T01
Chr1 exon 87469586 87469701 87469586 ID=MsG0180005137.01.T01:exon:47665;Parent=MsG0180005137.01.T01
Chr1 CDS 87472079 87472335 87472079 ID=MsG0180005137.01.T01:cds;Parent=MsG0180005137.01.T01
Chr1 CDS 87471777 87471918 87471777 ID=MsG0180005137.01.T01:cds;Parent=MsG0180005137.01.T01
Chr1 CDS 87471491 87471624 87471491 ID=MsG0180005137.01.T01:cds;Parent=MsG0180005137.01.T01
Chr1 CDS 87470956 87470997 87470956 ID=MsG0180005137.01.T01:cds;Parent=MsG0180005137.01.T01
Chr1 CDS 87469879 87469988 87469879 ID=MsG0180005137.01.T01:cds;Parent=MsG0180005137.01.T01
Chr1 CDS 87469586 87469701 87469586 ID=MsG0180005137.01.T01:cds;Parent=MsG0180005137.01.T01
Gene Sequence

>MsG0180005137.01.T01

ATGAGTAGAAGAAGCAAACGATTTAGAAAGTTGCAGAAGAAGCAAATGATGTCATTTGGCCTTGGAATCTCTACGAACTGCAGCTGGTTGAGATGTCACGCCCGAATGCCTCCTTCATGTTCCATGTTTTCCCATGTTTCAATGTCTTCTCCTTCTTCTTGTTCCATTTTCAACTCTAATAAGTTCAACTGGACTCCAAGAGCATCCTCTGAAGGTTTGTCTTATTTGAGTGTATCTATCTATCACATGGAAACATGTTTATACTCTCATTCCTTGAAAGTTGGTGCTCAAATTTTATTAAAATGTTATTTGGCTTATCATGCAGGACTTCCTAATGAGTTAGTTGAAGATTCAAAATTTGTTCCTATAAATGTTGAGGATCCTAGATATGGTCCACCTATGTTCAATCAATCTAACTTAGGACCAAAACTTAGACGGTTGTCAACTCATTCATACGTAGCTAAGTGCAGGGGTTTCTTTTTATTTTGCAGGCCTTGTTGTTGTTGGGATTTGAAGCAGATGAACATTTTAAGATTCAACAGTTTTTTGAAAGAGTTAGAGGGTGAGTTCCTGAGCATTTTGTGCCTTGCATTGCAGATAGACAAGTCACTTCCACGAATATGTTTCTTATCTGGTTTAAGCGGAGAGGAGACGATGATGTTCGTTGATGCTTTCCCTGAAACTGGACTAAAACCAGCCGCGTTTGCGGCTCTTGTTCCCAACAGTGCTAACAAACCACTATATGAGTTGATAGAAGAAATCACGGGAGATCATGAGATGTTGGTAGGTGTTTATTTCTAG

Protein sequence

>MsG0180005137.01.T01

MSRRSKRFRKLQKKQMMSFGLGISTNCSWLRCHARMPPSCSMFSHVSMSSPSSCSIFNSNKFNWTPRASSEGLSYLSVSIYHMETCLYSHSLKVGAQILLKCYLAYHAGLPNELVEDSKFVPINVEDPRYGPPMFNQSNLGPKLRRLSTHSYVAKCRGFFLFCRPCCCWDLKQMNILRFNSFLKELEGEFLSILCLALQIDKSLPRICFLSGLSGEETMMFVDAFPETGLKPAAFAALVPNSANKPLYELIEEITGDHEMLVGVYF*