Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016870.01.T01 | XP_003602673.2 | 84.783 | 184 | 16 | 2 | 5 | 177 | 127 | 309 | 1.01E-105 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016870.01.T01 | G8A1P3 | 84.783 | 184 | 16 | 2 | 5 | 177 | 127 | 309 | 4.81e-106 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048506.01 | MsG0380016870.01 | -0.800569 | 1.355429e-48 | 6.332130e-46 |
| MsG0080048528.01 | MsG0380016870.01 | 0.804541 | 2.055816e-49 | 1.062783e-46 |
| MsG0080048776.01 | MsG0380016870.01 | 0.804593 | 2.005483e-49 | 1.038158e-46 |
| MsG0080048987.01 | MsG0380016870.01 | 0.851669 | 7.635803e-61 | 1.556993e-57 |
| MsG0080048993.01 | MsG0380016870.01 | 0.804243 | 2.372129e-49 | 1.216887e-46 |
| MsG0180000322.01 | MsG0380016870.01 | 0.834158 | 3.522373e-56 | 4.144745e-53 |
| MsG0180000352.01 | MsG0380016870.01 | 0.815861 | 7.441021e-52 | 5.189852e-49 |
| MsG0180000793.01 | MsG0380016870.01 | 0.815340 | 9.721948e-52 | 6.684792e-49 |
| MsG0180001138.01 | MsG0380016870.01 | 0.804988 | 1.658132e-49 | 8.671639e-47 |
| MsG0180001827.01 | MsG0380016870.01 | 0.834332 | 3.186041e-56 | 3.769211e-53 |
| MsG0180002671.01 | MsG0380016870.01 | 0.807355 | 5.262686e-50 | 2.924932e-47 |
| MsG0180002809.01 | MsG0380016870.01 | 0.807837 | 4.158479e-50 | 2.340375e-47 |
| MsG0180003114.01 | MsG0380016870.01 | 0.811612 | 6.418182e-51 | 3.990934e-48 |
| MsG0180003453.01 | MsG0380016870.01 | 0.829288 | 5.598072e-55 | 5.705484e-52 |
| MsG0180003759.01 | MsG0380016870.01 | 0.808129 | 3.603778e-50 | 2.043907e-47 |
| MsG0180003980.01 | MsG0380016870.01 | 0.816297 | 5.947050e-52 | 4.197979e-49 |
| MsG0180004580.01 | MsG0380016870.01 | 0.822459 | 2.341847e-53 | 1.961312e-50 |
| MsG0180004581.01 | MsG0380016870.01 | 0.816267 | 6.040338e-52 | 4.260242e-49 |
| MsG0180004634.01 | MsG0380016870.01 | 0.820874 | 5.446989e-53 | 4.362609e-50 |
| MsG0180005016.01 | MsG0380016870.01 | 0.804832 | 1.787560e-49 | 9.311393e-47 |
| MsG0180006142.01 | MsG0380016870.01 | 0.820891 | 5.396348e-53 | 4.324123e-50 |
| MsG0180006239.01 | MsG0380016870.01 | 0.802891 | 4.523385e-49 | 2.241540e-46 |
| MsG0280006381.01 | MsG0380016870.01 | 0.802663 | 5.041121e-49 | 2.483521e-46 |
| MsG0280006400.01 | MsG0380016870.01 | 0.820969 | 5.179047e-53 | 4.159220e-50 |
| MsG0280011162.01 | MsG0380016870.01 | 0.800540 | 1.373821e-48 | 6.413396e-46 |
| MsG0280011276.01 | MsG0380016870.01 | 0.809156 | 2.174766e-50 | 1.267332e-47 |
| MsG0380012782.01 | MsG0380016870.01 | 0.808526 | 2.965966e-50 | 1.699794e-47 |
| MsG0380014470.01 | MsG0380016870.01 | 0.814554 | 1.452388e-51 | 9.776130e-49 |
| MsG0380014795.01 | MsG0380016870.01 | 0.808473 | 3.044633e-50 | 1.742483e-47 |
| MsG0380015081.01 | MsG0380016870.01 | 0.857210 | 1.905758e-62 | 4.667789e-59 |
| MsG0380015111.01 | MsG0380016870.01 | 0.808050 | 3.746733e-50 | 2.120456e-47 |
| MsG0380015121.01 | MsG0380016870.01 | 0.831341 | 1.763481e-55 | 1.908136e-52 |
| MsG0380015619.01 | MsG0380016870.01 | 0.819750 | 9.856081e-53 | 7.651029e-50 |
| MsG0380015719.01 | MsG0380016870.01 | 0.806171 | 9.365388e-50 | 5.048915e-47 |
| MsG0380015795.01 | MsG0380016870.01 | 0.821806 | 3.318992e-53 | 2.728473e-50 |
| MsG0380016042.01 | MsG0380016870.01 | 0.805575 | 1.249365e-49 | 6.633023e-47 |
| MsG0380016166.01 | MsG0380016870.01 | 0.840443 | 8.668134e-58 | 1.234929e-54 |
| MsG0380016395.01 | MsG0380016870.01 | 0.808024 | 3.795145e-50 | 2.146429e-47 |
| MsG0380016478.01 | MsG0380016870.01 | 0.826061 | 3.334931e-54 | 3.094127e-51 |
| MsG0380016530.01 | MsG0380016870.01 | 0.801532 | 8.612261e-49 | 4.122698e-46 |
| MsG0380016658.01 | MsG0380016870.01 | 0.844879 | 5.750087e-59 | 9.412430e-56 |
| MsG0380016699.01 | MsG0380016870.01 | 0.800568 | 1.356230e-48 | 6.335665e-46 |
| MsG0380016870.01 | MsG0380017018.01 | 0.809624 | 1.725679e-50 | 1.018298e-47 |
| MsG0380016870.01 | MsG0380017472.01 | 0.834825 | 2.396008e-56 | 2.876509e-53 |
| MsG0380016870.01 | MsG0380017474.01 | 0.839153 | 1.878125e-57 | 2.570852e-54 |
| MsG0380016870.01 | MsG0380017773.01 | 0.820804 | 5.651201e-53 | 4.517380e-50 |
| MsG0380016870.01 | MsG0480018098.01 | 0.810083 | 1.375070e-50 | 8.211659e-48 |
| MsG0380016870.01 | MsG0480018100.01 | 0.803471 | 3.432232e-49 | 1.726209e-46 |
| MsG0380016870.01 | MsG0480018108.01 | 0.861252 | 1.169085e-63 | 3.286901e-60 |
| MsG0380016870.01 | MsG0480018190.01 | 0.800121 | 1.671986e-48 | 7.722814e-46 |
| MsG0380016870.01 | MsG0480018201.01 | 0.802138 | 6.467274e-49 | 3.143832e-46 |
| MsG0380016870.01 | MsG0480018202.01 | 0.818281 | 2.127926e-52 | 1.585857e-49 |
| MsG0380016870.01 | MsG0480018203.01 | 0.818185 | 2.236760e-52 | 1.662649e-49 |
| MsG0380016870.01 | MsG0480018997.01 | 0.820270 | 7.493456e-53 | 5.901698e-50 |
| MsG0380016870.01 | MsG0480019376.01 | 0.810767 | 9.787811e-51 | 5.952077e-48 |
| MsG0380016870.01 | MsG0480020151.01 | 0.831968 | 1.235281e-55 | 1.361784e-52 |
| MsG0380016870.01 | MsG0480020498.01 | 0.806760 | 7.033295e-50 | 3.849006e-47 |
| MsG0380016870.01 | MsG0480020501.01 | 0.818101 | 2.336943e-52 | 1.733010e-49 |
| MsG0380016870.01 | MsG0480021039.01 | 0.801910 | 7.204137e-49 | 3.481843e-46 |
| MsG0380016870.01 | MsG0480021143.01 | 0.800038 | 1.738656e-48 | 8.013710e-46 |
| MsG0380016870.01 | MsG0480021312.01 | 0.810835 | 9.461727e-51 | 5.764269e-48 |
| MsG0380016870.01 | MsG0480021497.01 | 0.807256 | 5.525251e-50 | 3.062937e-47 |
| MsG0380016870.01 | MsG0480021597.01 | 0.810857 | 9.358683e-51 | 5.704903e-48 |
| MsG0380016870.01 | MsG0480021795.01 | 0.806097 | 9.704829e-50 | 5.221908e-47 |
| MsG0380016870.01 | MsG0480022088.01 | 0.878069 | 3.781950e-69 | 1.946839e-65 |
| MsG0380016870.01 | MsG0480022161.01 | 0.804511 | 2.085902e-49 | 1.077463e-46 |
| MsG0380016870.01 | MsG0480022411.01 | 0.817009 | 4.117846e-52 | 2.963942e-49 |
| MsG0380016870.01 | MsG0480022458.01 | 0.806182 | 9.315937e-50 | 5.023698e-47 |
| MsG0380016870.01 | MsG0480022584.01 | 0.808603 | 2.856025e-50 | 1.639997e-47 |
| MsG0380016870.01 | MsG0480022622.01 | 0.829220 | 5.814194e-55 | 5.913209e-52 |
| MsG0380016870.01 | MsG0480022773.01 | 0.809978 | 1.448408e-50 | 8.626409e-48 |
| MsG0380016870.01 | MsG0480023148.01 | 0.833226 | 6.021272e-56 | 6.890478e-53 |
| MsG0380016870.01 | MsG0480023211.01 | 0.801650 | 8.145509e-49 | 3.910792e-46 |
| MsG0380016870.01 | MsG0480023376.01 | 0.813276 | 2.777944e-51 | 1.806111e-48 |
| MsG0380016870.01 | MsG0480023469.01 | 0.837250 | 5.806812e-57 | 7.498671e-54 |
| MsG0380016870.01 | MsG0480023482.01 | 0.829645 | 4.585403e-55 | 4.721561e-52 |
| MsG0380016870.01 | MsG0480023483.01 | 0.850652 | 1.478176e-60 | 2.915920e-57 |
| MsG0380016870.01 | MsG0480023531.01 | 0.806670 | 7.350420e-50 | 4.013076e-47 |
| MsG0380016870.01 | MsG0480023704.01 | 0.817454 | 3.269810e-52 | 2.382420e-49 |
| MsG0380016870.01 | MsG0480023705.01 | 0.823410 | 1.405918e-53 | 1.209466e-50 |
| MsG0380016870.01 | MsG0480023818.01 | 0.843589 | 1.276653e-58 | 2.007114e-55 |
| MsG0380016870.01 | MsG0480023821.01 | 0.827010 | 1.981109e-54 | 1.888710e-51 |
| MsG0380016870.01 | MsG0580024054.01 | 0.848777 | 4.937157e-60 | 9.161022e-57 |
| MsG0380016870.01 | MsG0580024487.01 | 0.800124 | 1.669543e-48 | 7.712142e-46 |
| MsG0380016870.01 | MsG0580024950.01 | 0.800899 | 1.160355e-48 | 5.466878e-46 |
| MsG0380016870.01 | MsG0580025259.01 | 0.807192 | 5.698690e-50 | 3.153863e-47 |
| MsG0380016870.01 | MsG0580025315.01 | 0.815459 | 9.147873e-52 | 6.310843e-49 |
| MsG0380016870.01 | MsG0580025373.01 | 0.805267 | 1.449746e-49 | 7.636049e-47 |
| MsG0380016870.01 | MsG0580025392.01 | 0.809204 | 2.124372e-50 | 1.239565e-47 |
| MsG0380016870.01 | MsG0580026211.01 | 0.814564 | 1.444811e-51 | 9.727988e-49 |
| MsG0380016870.01 | MsG0580027094.01 | 0.823596 | 1.272403e-53 | 1.100499e-50 |
| MsG0380016870.01 | MsG0680030477.01 | 0.805298 | 1.428322e-49 | 7.529382e-47 |
| MsG0380016870.01 | MsG0680032160.01 | 0.837926 | 3.895880e-57 | 5.137304e-54 |
| MsG0380016870.01 | MsG0680035619.01 | 0.805706 | 1.172991e-49 | 6.249047e-47 |
| MsG0380016870.01 | MsG0780035994.01 | 0.810954 | 8.913908e-51 | 5.448279e-48 |
| MsG0380016870.01 | MsG0780036909.01 | 0.811627 | 6.369624e-51 | 3.962364e-48 |
| MsG0380016870.01 | MsG0780037655.01 | 0.805206 | 1.492872e-49 | 7.851184e-47 |
| MsG0380016870.01 | MsG0780037734.01 | 0.845564 | 3.753813e-59 | 6.280830e-56 |
| MsG0380016870.01 | MsG0780039988.01 | 0.800885 | 1.168349e-48 | 5.502442e-46 |
| MsG0380016870.01 | MsG0780040072.01 | 0.812448 | 4.218303e-51 | 2.682946e-48 |
| MsG0380016870.01 | MsG0780040158.01 | 0.817573 | 3.074837e-52 | 2.247495e-49 |
| MsG0380016870.01 | MsG0780040159.01 | 0.816496 | 5.367277e-52 | 3.808982e-49 |
| MsG0380016870.01 | MsG0780040352.01 | 0.802634 | 5.110968e-49 | 2.516124e-46 |
| MsG0380016870.01 | MsG0780040649.01 | 0.822123 | 2.802907e-53 | 2.324988e-50 |
| MsG0380016870.01 | MsG0780040685.01 | 0.816078 | 6.657033e-52 | 4.670990e-49 |
| MsG0380016870.01 | MsG0780040884.01 | 0.814627 | 1.399310e-51 | 9.437303e-49 |
| MsG0380016870.01 | MsG0780041035.01 | 0.819248 | 1.282901e-52 | 9.820294e-50 |
| MsG0380016870.01 | MsG0780041474.01 | 0.816296 | 5.950909e-52 | 4.200558e-49 |
| MsG0380016870.01 | MsG0780041492.01 | 0.833286 | 5.820252e-56 | 6.672266e-53 |
| MsG0380016870.01 | MsG0780041706.01 | 0.800888 | 1.166688e-48 | 5.495079e-46 |
| MsG0380016870.01 | MsG0880041835.01 | 0.827437 | 1.565511e-54 | 1.511344e-51 |
| MsG0380016870.01 | MsG0880042043.01 | 0.822679 | 2.082291e-53 | 1.754917e-50 |
| MsG0380016870.01 | MsG0880044488.01 | 0.831581 | 1.539079e-55 | 1.677405e-52 |
| MsG0380016870.01 | MsG0880044595.01 | 0.851330 | 9.521742e-61 | 1.920740e-57 |
| MsG0380016870.01 | MsG0880045063.01 | 0.817886 | 2.612713e-52 | 1.926228e-49 |
| MsG0380016870.01 | MsG0880045224.01 | 0.805583 | 1.244799e-49 | 6.610203e-47 |
| MsG0380016870.01 | MsG0880045697.01 | 0.881154 | 3.038499e-70 | 1.760492e-66 |
| MsG0380016870.01 | MsG0880046151.01 | 0.811719 | 6.083164e-51 | 3.793478e-48 |
| MsG0380016870.01 | MsG0880046252.01 | 0.801895 | 7.256678e-49 | 3.505958e-46 |
| MsG0380016870.01 | MsG0880046876.01 | 0.814180 | 1.757060e-51 | 1.170732e-48 |
| MsG0380016870.01 | MsG0880047540.01 | 0.806200 | 9.233680e-50 | 4.981569e-47 |
| MsG0380016870.01 | MsG0880047578.01 | 0.847177 | 1.363362e-59 | 2.403198e-56 |
| MsG0380016870.01 | MsG0880047616.01 | 0.806569 | 7.719368e-50 | 4.203864e-47 |
| MsG0380016870.01 | MsG0880047627.01 | 0.821532 | 3.839812e-53 | 3.132050e-50 |
| MsG0380016870.01 | MsG0880047669.01 | 0.811970 | 5.362533e-51 | 3.366672e-48 |
| MsG0280006825.01 | MsG0380016870.01 | 0.839050 | 1.997498e-57 | 2.725742e-54 |
| MsG0280007079.01 | MsG0380016870.01 | 0.850860 | 1.291780e-60 | 2.565639e-57 |
| MsG0280007322.01 | MsG0380016870.01 | 0.800436 | 1.442558e-48 | 6.716663e-46 |
| MsG0280007800.01 | MsG0380016870.01 | 0.828739 | 7.603734e-55 | 7.623600e-52 |
| MsG0280008430.01 | MsG0380016870.01 | 0.828186 | 1.033909e-54 | 1.020175e-51 |
| MsG0280009103.01 | MsG0380016870.01 | 0.804008 | 2.655174e-49 | 1.353993e-46 |
| MsG0280009431.01 | MsG0380016870.01 | 0.807080 | 6.020570e-50 | 3.322142e-47 |
| MsG0280010149.01 | MsG0380016870.01 | 0.803787 | 2.950793e-49 | 1.496237e-46 |
| MsG0280010356.01 | MsG0380016870.01 | 0.808936 | 2.424275e-50 | 1.404328e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016870.01.T01 | MTR_3g096860 | 84.783 | 184 | 16 | 2 | 5 | 177 | 127 | 309 | 1.22e-109 | 315 |
| MsG0380016870.01.T01 | MTR_3g096860 | 86.957 | 138 | 17 | 1 | 5 | 142 | 127 | 263 | 8.29e-87 | 258 |
| MsG0380016870.01.T01 | MTR_8g094200 | 58.065 | 186 | 66 | 2 | 3 | 176 | 142 | 327 | 4.97e-71 | 218 |
| MsG0380016870.01.T01 | MTR_8g094200 | 59.286 | 140 | 56 | 1 | 3 | 141 | 142 | 281 | 1.38e-58 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016870.01.T01 | AT4G33480 | 65.957 | 188 | 51 | 3 | 3 | 177 | 148 | 335 | 6.61e-77 | 233 |
Find 51 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAGATGCATTCGTAATT+TGG | 0.146385 | 3:-88824491 | None:intergenic |
| ATCCTGATGAAGAACTAAAA+TGG | 0.282546 | 3:-88826432 | None:intergenic |
| AAATTCAGTCTCTTCATCTA+TGG | 0.303961 | 3:-88826229 | None:intergenic |
| ATCAGGATTGCCCCACTGTT+GGG | 0.364007 | 3:+88826447 | MsG0380016870.01.T01:three_prime_UTR |
| CGAATGCATCTGATTTATAG+TGG | 0.365590 | 3:+88824499 | MsG0380016870.01.T01:CDS |
| TCCTGCGAACAACCTTCCTT+TGG | 0.378943 | 3:+88823486 | MsG0380016870.01.T01:CDS |
| GTGCTCTGTAATATTTGTAT+AGG | 0.414803 | 3:-88823818 | None:intergenic |
| CATCAGGATTGCCCCACTGT+TGG | 0.420070 | 3:+88826446 | MsG0380016870.01.T01:three_prime_UTR |
| TTCCTTTGGAATGCGTGATA+AGG | 0.446204 | 3:+88823500 | MsG0380016870.01.T01:CDS |
| AGATGGTAAAGATGATGGCT+TGG | 0.488428 | 3:+88825156 | MsG0380016870.01.T01:intron |
| GACTGAATTTAATGCCTTGG+TGG | 0.490843 | 3:+88826242 | MsG0380016870.01.T01:CDS |
| AGAAATCACACACTTCAATC+AGG | 0.494930 | 3:+88825192 | MsG0380016870.01.T01:CDS |
| GCACTCCTTGACTCACTGTT+GGG | 0.503400 | 3:+88826362 | MsG0380016870.01.T01:CDS |
| GACATCTTTGACTTTCATGC+AGG | 0.506567 | 3:+88824658 | MsG0380016870.01.T01:CDS |
| CGCACTCCTTGACTCACTGT+TGG | 0.510918 | 3:+88826361 | MsG0380016870.01.T01:CDS |
| TCGAATTATGCAAGTGGCTG+TGG | 0.519655 | 3:+88823318 | MsG0380016871.01.T01:intron |
| AAAACTTACTTCTAAAACAA+GGG | 0.520997 | 3:-88826630 | None:intergenic |
| AGAGACTGAATTTAATGCCT+TGG | 0.522159 | 3:+88826239 | MsG0380016870.01.T01:CDS |
| GCAAGTGCAAAAGAAGCAGC+AGG | 0.531459 | 3:-88824469 | None:intergenic |
| AGAACTAAAATGGAAACAGT+AGG | 0.541288 | 3:-88826422 | None:intergenic |
| GTCAACACTCACTAAAACAA+GGG | 0.548440 | 3:-88826588 | None:intergenic |
| TCCAAAGGAAGGTTGTTCGC+AGG | 0.550682 | 3:-88823487 | None:intergenic |
| CTCCTTATCACGCATTCCAA+AGG | 0.556000 | 3:-88823502 | None:intergenic |
| GAACTAAAATGGAAACAGTA+GGG | 0.568044 | 3:-88826421 | None:intergenic |
| TTATGAACAGGAATTGCTTG+AGG | 0.572765 | 3:+88826188 | MsG0380016870.01.T01:intron |
| CATTTAACTTACATGTCAAG+TGG | 0.573255 | 3:-88823568 | None:intergenic |
| GAATGCATCTGATTTATAGT+GGG | 0.573548 | 3:+88824500 | MsG0380016870.01.T01:CDS |
| ATATTACAGAGCACAGGTGA+TGG | 0.577846 | 3:+88823827 | MsG0380016870.01.T01:CDS |
| TCTATGGCGCTAATGACAGC+AGG | 0.580399 | 3:-88826213 | None:intergenic |
| TTATCACGCATTCCAAAGGA+AGG | 0.584077 | 3:-88823498 | None:intergenic |
| TACTGTCTTACCGCTCGTGG+CGG | 0.584467 | 3:+88824617 | MsG0380016870.01.T01:CDS |
| TACAGAGCACAGGTGATGGA+TGG | 0.592566 | 3:+88823831 | MsG0380016870.01.T01:CDS |
| ATTTAACTTACATGTCAAGT+GGG | 0.593365 | 3:-88823567 | None:intergenic |
| AGATGATGGCTTGGCAACTG+AGG | 0.596641 | 3:+88825165 | MsG0380016870.01.T01:CDS |
| TATGAATCGAATTATGCAAG+TGG | 0.600367 | 3:+88823312 | MsG0380016871.01.T01:intron |
| AGATACTGTCTTACCGCTCG+TGG | 0.600423 | 3:+88824614 | MsG0380016870.01.T01:intron |
| TGTCAACACTCACTAAAACA+AGG | 0.601730 | 3:-88826589 | None:intergenic |
| CTGCATTCAGACCCAACAGT+GGG | 0.604290 | 3:-88826458 | None:intergenic |
| AGTAACAAAACCGCCACGAG+CGG | 0.612199 | 3:-88824627 | None:intergenic |
| TATTTAGTATGATCGAGGAC+TGG | 0.614379 | 3:+88826544 | MsG0380016870.01.T01:three_prime_UTR |
| ATACAAATATTACAGAGCAC+AGG | 0.618579 | 3:+88823821 | MsG0380016870.01.T01:CDS |
| GAAAACTTACTTCTAAAACA+AGG | 0.631725 | 3:-88826631 | None:intergenic |
| AAACTTACTTCTAAAACAAG+GGG | 0.635311 | 3:-88826629 | None:intergenic |
| GATGATGGCTTGGCAACTGA+GGG | 0.636441 | 3:+88825166 | MsG0380016870.01.T01:CDS |
| AGAATATTCACAAGTTCTCG+AGG | 0.645145 | 3:+88823523 | MsG0380016870.01.T01:CDS |
| TCAACACTCACTAAAACAAG+GGG | 0.657937 | 3:-88826587 | None:intergenic |
| ATGTATATTTAGTATGATCG+AGG | 0.666267 | 3:+88826539 | MsG0380016870.01.T01:three_prime_UTR |
| CAACAGTGAGTCAAGGAGTG+CGG | 0.672482 | 3:-88826360 | None:intergenic |
| TGCATTCAGACCCAACAGTG+GGG | 0.726533 | 3:-88826457 | None:intergenic |
| AGATTAATCACATACCACCA+AGG | 0.727438 | 3:-88826256 | None:intergenic |
| TCTGCATTCAGACCCAACAG+TGG | 0.735904 | 3:-88826459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAAAAAAATATTTTACA+GGG | + | Chr3:88824990-88825009 | MsG0380016870.01.T01:intron | 10.0% |
| !!! | TGTAAAATATTTTTTTTGTA+GGG | - | Chr3:88824990-88825009 | None:intergenic | 10.0% |
| !!! | TTTTTATGAATATTATTGTT+AGG | + | Chr3:88823459-88823478 | MsG0380016870.01.T01:intron | 10.0% |
| !! | AAAACATATTAAATTAGATG+GGG | - | Chr3:88825573-88825592 | None:intergenic | 15.0% |
| !! | AGAAAACATATTAAATTAGA+TGG | - | Chr3:88825575-88825594 | None:intergenic | 15.0% |
| !! | GAAAACATATTAAATTAGAT+GGG | - | Chr3:88825574-88825593 | None:intergenic | 15.0% |
| !! | TATTTATTAACTTTAGATTG+TGG | + | Chr3:88823780-88823799 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | ATGTTTTAATGTTTAATTCA+TGG | + | Chr3:88823588-88823607 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | CTACAAAAAAAATATTTTAC+AGG | + | Chr3:88824989-88825008 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | CTGTAAAATATTTTTTTTGT+AGG | - | Chr3:88824991-88825010 | None:intergenic | 15.0% |
| !!! | GACTTTTAAGTTTTAAAAAT+AGG | + | Chr3:88823926-88823945 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | TAATACTATTTGAAATAAAG+CGG | + | Chr3:88825623-88825642 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | TTCTAAAGTCTATAAAAATA+AGG | + | Chr3:88824188-88824207 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | TTTATATATCTAAGGTTTTA+GGG | + | Chr3:88823627-88823646 | MsG0380016870.01.T01:intron | 15.0% |
| !!! | TTTATATATTCAAGGTTTTA+GGG | + | Chr3:88823975-88823994 | MsG0380016870.01.T01:intron | 15.0% |
| !! | AAACATATTAAATTAGATGG+GGG | - | Chr3:88825572-88825591 | None:intergenic | 20.0% |
| !! | AAAGTCTATAAAAATAAGGA+TGG | + | Chr3:88824192-88824211 | MsG0380016870.01.T01:intron | 20.0% |
| !! | ATGTTATATTCAGATTATTG+TGG | + | Chr3:88824750-88824769 | MsG0380016870.01.T01:intron | 20.0% |
| !! | CAAAAAATTGTATATTTACC+AGG | + | Chr3:88825019-88825038 | MsG0380016870.01.T01:intron | 20.0% |
| !! | CAATATAATACTAAATTCAC+AGG | - | Chr3:88825934-88825953 | None:intergenic | 20.0% |
| !! | GATTACAGTTTATATATCTA+AGG | + | Chr3:88823619-88823638 | MsG0380016870.01.T01:intron | 20.0% |
| !! | TATCATACTCGTTATAATTA+GGG | + | Chr3:88825056-88825075 | MsG0380016870.01.T01:intron | 20.0% |
| !! | TTATCATACTCGTTATAATT+AGG | + | Chr3:88825055-88825074 | MsG0380016870.01.T01:intron | 20.0% |
| !!! | AAAACTTACTTCTAAAACAA+GGG | - | Chr3:88826633-88826652 | None:intergenic | 20.0% |
| !!! | GTTGAGATTCTATATTTTAT+GGG | + | Chr3:88824808-88824827 | MsG0380016870.01.T01:intron | 20.0% |
| !!! | GTTTATATATCTAAGGTTTT+AGG | + | Chr3:88823626-88823645 | MsG0380016870.01.T01:intron | 20.0% |
| !!! | GTTTATATATTCAAGGTTTT+AGG | + | Chr3:88823974-88823993 | MsG0380016870.01.T01:intron | 20.0% |
| !!! | TGTTGAGATTCTATATTTTA+TGG | + | Chr3:88824807-88824826 | MsG0380016870.01.T01:intron | 20.0% |
| !!! | TTATATATCTAAGGTTTTAG+GGG | + | Chr3:88823628-88823647 | MsG0380016870.01.T01:intron | 20.0% |
| !!! | TTATATATTCAAGGTTTTAG+GGG | + | Chr3:88823976-88823995 | MsG0380016870.01.T01:intron | 20.0% |
| ! | AAAAAAGATTATCAAAACCC+TGG | - | Chr3:88823757-88823776 | None:intergenic | 25.0% |
| ! | AATTGGACACCAAAATTTAA+TGG | + | Chr3:88825114-88825133 | MsG0380016870.01.T01:intron | 25.0% |
| ! | ACAATCCACAGTTTATTTAT+TGG | + | Chr3:88825959-88825978 | MsG0380016870.01.T01:intron | 25.0% |
| ! | ATGTATATTTAGTATGATCG+AGG | + | Chr3:88826539-88826558 | MsG0380016870.01.T01:three_prime_UTR | 25.0% |
| ! | CAGTTCAAATTTAATTCTGT+TGG | - | Chr3:88825453-88825472 | None:intergenic | 25.0% |
| ! | CATCTTTACCATCTAAAAAA+TGG | - | Chr3:88825150-88825169 | None:intergenic | 25.0% |
| ! | GACAACCTAAATTAAAACTT+CGG | + | Chr3:88824230-88824249 | MsG0380016870.01.T01:intron | 25.0% |
| ! | GACAATTTCTTGTATGATTA+CGG | + | Chr3:88823952-88823971 | MsG0380016870.01.T01:intron | 25.0% |
| ! | GATTACGGTTTATATATTCA+AGG | + | Chr3:88823967-88823986 | MsG0380016870.01.T01:intron | 25.0% |
| ! | TCATTGCTGACAATTTAAAT+AGG | + | Chr3:88823904-88823923 | MsG0380016870.01.T01:intron | 25.0% |
| ! | TGCCAATTAGAAAAAAATGT+AGG | - | Chr3:88825863-88825882 | None:intergenic | 25.0% |
| !! | AAACATCAGCCATTAAATTT+TGG | - | Chr3:88825126-88825145 | None:intergenic | 25.0% |
| !! | AAATCAAATGCATTTTACAG+TGG | + | Chr3:88825888-88825907 | MsG0380016870.01.T01:intron | 25.0% |
| !! | AATAAATAAACTGTGGATTG+TGG | - | Chr3:88825960-88825979 | None:intergenic | 25.0% |
| !! | ACCAAAGAAAAATGTTACTT+TGG | - | Chr3:88826283-88826302 | None:intergenic | 25.0% |
| !! | ATTTAACTTACATGTCAAGT+GGG | - | Chr3:88823570-88823589 | None:intergenic | 25.0% |
| !! | CACTAAAGTCAAAATTGTTT+TGG | - | Chr3:88824076-88824095 | None:intergenic | 25.0% |
| !! | CTAAAAGCTTGAAATTTGTT+TGG | + | Chr3:88824877-88824896 | MsG0380016870.01.T01:intron | 25.0% |
| !! | GCTAATTTCATTTTATGAAC+AGG | + | Chr3:88826176-88826195 | MsG0380016870.01.T01:intron | 25.0% |
| !! | TAAAAATTAGCTTACTTCGT+TGG | + | Chr3:88825366-88825385 | MsG0380016870.01.T01:intron | 25.0% |
| !! | TATAAAAGGAGTGTACAAAA+TGG | - | Chr3:88824021-88824040 | None:intergenic | 25.0% |
| !! | TCCAAAGTAACATTTTTCTT+TGG | + | Chr3:88826279-88826298 | MsG0380016870.01.T01:intron | 25.0% |
| !! | TGTTTTCTTTCCATGTTTTT+AGG | + | Chr3:88824417-88824436 | MsG0380016870.01.T01:intron | 25.0% |
| !! | TTTGGTAATTATGATTTGAC+AGG | + | Chr3:88823383-88823402 | MsG0380016870.01.T01:intron | 25.0% |
| !! | TTTTTAGATGGTAAAGATGA+TGG | + | Chr3:88825151-88825170 | MsG0380016870.01.T01:intron | 25.0% |
| !!! | AAAATAAGGATGGTTTTGTA+AGG | + | Chr3:88824202-88824221 | MsG0380016870.01.T01:intron | 25.0% |
| !!! | AAACTTACTTCTAAAACAAG+GGG | - | Chr3:88826632-88826651 | None:intergenic | 25.0% |
| !!! | AATACTGATTCATAGAAGAA+AGG | - | Chr3:88825423-88825442 | None:intergenic | 25.0% |
| !!! | ACTTTAGAACTTATATGCAA+TGG | - | Chr3:88824177-88824196 | None:intergenic | 25.0% |
| !!! | ATTTGCCGAAGTTTTAATTT+AGG | - | Chr3:88824238-88824257 | None:intergenic | 25.0% |
| !!! | CTCCTACATTTTTTTCTAAT+TGG | + | Chr3:88825858-88825877 | MsG0380016870.01.T01:intron | 25.0% |
| !!! | GAAAACTTACTTCTAAAACA+AGG | - | Chr3:88826634-88826653 | None:intergenic | 25.0% |
| !!! | GATAAATATGTTTTTAGTCC+TGG | - | Chr3:88825040-88825059 | None:intergenic | 25.0% |
| !!! | GATGTTTTCCATTTTTTAGA+TGG | + | Chr3:88825139-88825158 | MsG0380016870.01.T01:intron | 25.0% |
| !!! | TGGAACAGTTAGTTTTATTA+TGG | + | Chr3:88826564-88826583 | MsG0380016870.01.T01:three_prime_UTR | 25.0% |
| AAAATGAAATTAGCGACACA+AGG | - | Chr3:88826170-88826189 | None:intergenic | 30.0% | |
| AAAGGAAAGCAAACATGATT+GGG | - | Chr3:88825405-88825424 | None:intergenic | 30.0% | |
| AAATGAAATTAGCGACACAA+GGG | - | Chr3:88826169-88826188 | None:intergenic | 30.0% | |
| AAATTCAGTCTCTTCATCTA+TGG | - | Chr3:88826232-88826251 | None:intergenic | 30.0% | |
| AATCAGATGCATTCGTAATT+TGG | - | Chr3:88824494-88824513 | None:intergenic | 30.0% | |
| ACAACGACTACAAAAACAAA+AGG | - | Chr3:88824374-88824393 | None:intergenic | 30.0% | |
| AGAACTAAAATGGAAACAGT+AGG | - | Chr3:88826425-88826444 | None:intergenic | 30.0% | |
| AGTATACCAATGCAAATTTG+AGG | - | Chr3:88825329-88825348 | None:intergenic | 30.0% | |
| ATACAAATATTACAGAGCAC+AGG | + | Chr3:88823821-88823840 | MsG0380016870.01.T01:CDS | 30.0% | |
| ATACATCCTCAAATTTGCAT+TGG | + | Chr3:88825320-88825339 | MsG0380016870.01.T01:intron | 30.0% | |
| ATCCTGATGAAGAACTAAAA+TGG | - | Chr3:88826435-88826454 | None:intergenic | 30.0% | |
| CATGTCCAATAAATAAACTG+TGG | - | Chr3:88825967-88825986 | None:intergenic | 30.0% | |
| CGGTTTCTAAATCATATGTA+TGG | + | Chr3:88823660-88823679 | MsG0380016870.01.T01:intron | 30.0% | |
| CTGATACTTCAACTACAAAA+TGG | - | Chr3:88823871-88823890 | None:intergenic | 30.0% | |
| GAACTAAAATGGAAACAGTA+GGG | - | Chr3:88826424-88826443 | None:intergenic | 30.0% | |
| GAATGCATCTGATTTATAGT+GGG | + | Chr3:88824500-88824519 | MsG0380016870.01.T01:CDS | 30.0% | |
| GATCATAAATTTATCCTTGC+AGG | + | Chr3:88826008-88826027 | MsG0380016870.01.T01:intron | 30.0% | |
| GTGCTCTGTAATATTTGTAT+AGG | - | Chr3:88823821-88823840 | None:intergenic | 30.0% | |
| TACACTGATCAGAAATACAT+GGG | - | Chr3:88826121-88826140 | None:intergenic | 30.0% | |
| TAGAACTTATATGCAATGGT+TGG | - | Chr3:88824173-88824192 | None:intergenic | 30.0% | |
| TCTAACAAACTTGAATATGG+AGG | - | Chr3:88825742-88825761 | None:intergenic | 30.0% | |
| TGACGATTTCTGTTATGTTA+AGG | + | Chr3:88823353-88823372 | MsG0380016870.01.T01:intron | 30.0% | |
| TGCTCTAACAAACTTGAATA+TGG | - | Chr3:88825745-88825764 | None:intergenic | 30.0% | |
| TGCTTCATAACCATTTGAAT+TGG | + | Chr3:88825097-88825116 | MsG0380016870.01.T01:intron | 30.0% | |
| TTACACTGATCAGAAATACA+TGG | - | Chr3:88826122-88826141 | None:intergenic | 30.0% | |
| TTATGTTAAGGCACAATCTT+TGG | + | Chr3:88823365-88823384 | MsG0380016870.01.T01:intron | 30.0% | |
| TTGACAGGAATATTATTGCA+GGG | + | Chr3:88823398-88823417 | MsG0380016870.01.T01:intron | 30.0% | |
| TTGTACAGCTGTACTATAAA+AGG | - | Chr3:88824035-88824054 | None:intergenic | 30.0% | |
| TTTGACAGGAATATTATTGC+AGG | + | Chr3:88823397-88823416 | MsG0380016870.01.T01:intron | 30.0% | |
| ! | AAAAGGATTTTCCATTAGCT+AGG | - | Chr3:88824357-88824376 | None:intergenic | 30.0% |
| ! | ACTATTTGAAATAAAGCGGA+TGG | + | Chr3:88825627-88825646 | MsG0380016870.01.T01:intron | 30.0% |
| ! | ACTTATTGGAATTTTGTTGC+AGG | + | Chr3:88825652-88825671 | MsG0380016870.01.T01:intron | 30.0% |
| ! | AGATTTTATAGCTCACAACA+TGG | + | Chr3:88824774-88824793 | MsG0380016870.01.T01:intron | 30.0% |
| ! | ATGTATTTCTGATCAGTGTA+AGG | + | Chr3:88826121-88826140 | MsG0380016870.01.T01:intron | 30.0% |
| ! | ATTTTCCATTAGCTAGGTTT+GGG | - | Chr3:88824351-88824370 | None:intergenic | 30.0% |
| ! | CAAATGCATTTTATAGTGAC+CGG | + | Chr3:88825824-88825843 | MsG0380016870.01.T01:intron | 30.0% |
| ! | CATTTAACTTACATGTCAAG+TGG | - | Chr3:88823571-88823590 | None:intergenic | 30.0% |
| ! | GATTGTGGAATTTTTACTAC+AGG | + | Chr3:88823795-88823814 | MsG0380016870.01.T01:intron | 30.0% |
| ! | TGTATTTCTGATCAGTGTAA+GGG | + | Chr3:88826122-88826141 | MsG0380016870.01.T01:intron | 30.0% |
| !!! | ATTTTGGTGTCCAATTCAAA+TGG | - | Chr3:88825110-88825129 | None:intergenic | 30.0% |
| !!! | TTCCATTTTAGTTCTTCATC+AGG | + | Chr3:88826430-88826449 | MsG0380016870.01.T01:three_prime_UTR | 30.0% |
| AACACTACGCTAAAAATCCA+GGG | + | Chr3:88823737-88823756 | MsG0380016870.01.T01:intron | 35.0% | |
| AAGCGAGGTGAATAAATAGA+AGG | - | Chr3:88824926-88824945 | None:intergenic | 35.0% | |
| AGAAATCACACACTTCAATC+AGG | + | Chr3:88825192-88825211 | MsG0380016870.01.T01:CDS | 35.0% | |
| AGAATATTCACAAGTTCTCG+AGG | + | Chr3:88823523-88823542 | MsG0380016870.01.T01:CDS | 35.0% | |
| AGAGACTGAATTTAATGCCT+TGG | + | Chr3:88826239-88826258 | MsG0380016870.01.T01:CDS | 35.0% | |
| AGATTAATCACATACCACCA+AGG | - | Chr3:88826259-88826278 | None:intergenic | 35.0% | |
| AGCGAGGTGAATAAATAGAA+GGG | - | Chr3:88824925-88824944 | None:intergenic | 35.0% | |
| CATCAGAGAGATTTCACATT+GGG | - | Chr3:88823696-88823715 | None:intergenic | 35.0% | |
| CATGAGAAAAGACTGACATA+TGG | - | Chr3:88824530-88824549 | None:intergenic | 35.0% | |
| CGAATGCATCTGATTTATAG+TGG | + | Chr3:88824499-88824518 | MsG0380016870.01.T01:CDS | 35.0% | |
| CGGTCACTATAAAATGCATT+TGG | - | Chr3:88825826-88825845 | None:intergenic | 35.0% | |
| GAAAGGAAAGCAAACATGAT+TGG | - | Chr3:88825406-88825425 | None:intergenic | 35.0% | |
| GAGAAAATGTCACAGGTAAA+TGG | - | Chr3:88825799-88825818 | None:intergenic | 35.0% | |
| GATTACCTAATTGAACTGTG+AGG | - | Chr3:88825263-88825282 | None:intergenic | 35.0% | |
| GGAAAACATACAGAAATGAG+TGG | - | Chr3:88826320-88826339 | None:intergenic | 35.0% | |
| GTCAACACTCACTAAAACAA+GGG | - | Chr3:88826591-88826610 | None:intergenic | 35.0% | |
| GTGAAATCTCTCTGATGATT+TGG | + | Chr3:88823699-88823718 | MsG0380016870.01.T01:intron | 35.0% | |
| TAAAGCGGATGGTAACTTAT+TGG | + | Chr3:88825638-88825657 | MsG0380016870.01.T01:intron | 35.0% | |
| TATTTAGTATGATCGAGGAC+TGG | + | Chr3:88826544-88826563 | MsG0380016870.01.T01:three_prime_UTR | 35.0% | |
| TCAACACTCACTAAAACAAG+GGG | - | Chr3:88826590-88826609 | None:intergenic | 35.0% | |
| TCATCAGAGAGATTTCACAT+TGG | - | Chr3:88823697-88823716 | None:intergenic | 35.0% | |
| TCGTAACTGACCTAAAAACA+TGG | - | Chr3:88824430-88824449 | None:intergenic | 35.0% | |
| TCTATTTATTCACCTCGCTT+TGG | + | Chr3:88824926-88824945 | MsG0380016870.01.T01:intron | 35.0% | |
| TGTCAACACTCACTAAAACA+AGG | - | Chr3:88826592-88826611 | None:intergenic | 35.0% | |
| TTATGAACAGGAATTGCTTG+AGG | + | Chr3:88826188-88826207 | MsG0380016870.01.T01:intron | 35.0% | |
| TTCGGCAAATCTTCATGAAA+TGG | + | Chr3:88824248-88824267 | MsG0380016870.01.T01:intron | 35.0% | |
| ! | AAATCGCTGATGATGTAAGT+AGG | + | Chr3:88826049-88826068 | MsG0380016870.01.T01:intron | 35.0% |
| ! | AATTAGCTTACTTCGTTGGA+TGG | + | Chr3:88825370-88825389 | MsG0380016870.01.T01:intron | 35.0% |
| ! | GATTTTCCATTAGCTAGGTT+TGG | - | Chr3:88824352-88824371 | None:intergenic | 35.0% |
| ! | TGTATGTTTTCCTTACACAC+AGG | + | Chr3:88826328-88826347 | MsG0380016870.01.T01:intron | 35.0% |
| !! | TGTAGGAGTACTTCAATTTC+CGG | - | Chr3:88825846-88825865 | None:intergenic | 35.0% |
| !!! | ATGTTTTTAGGTCAGTTACG+AGG | + | Chr3:88824429-88824448 | MsG0380016870.01.T01:intron | 35.0% |
| !!! | CATCTTTTTTGTTTGTCCTC+TGG | - | Chr3:88824733-88824752 | None:intergenic | 35.0% |
| !!! | TGGATTTTTAGCGTAGTGTT+GGG | - | Chr3:88823737-88823756 | None:intergenic | 35.0% |
| !!! | TTGTTTTAGTGAGTGTTGAC+AGG | + | Chr3:88826591-88826610 | MsG0380016870.01.T01:three_prime_UTR | 35.0% |
| AAGCATGGCATAGACATAGT+AGG | - | Chr3:88824145-88824164 | None:intergenic | 40.0% | |
| ACAAAAAGCAGTGGATCAGA+TGG | - | Chr3:88825704-88825723 | None:intergenic | 40.0% | |
| AGCATGGCATAGACATAGTA+GGG | - | Chr3:88824144-88824163 | None:intergenic | 40.0% | |
| ATATTACAGAGCACAGGTGA+TGG | + | Chr3:88823827-88823846 | MsG0380016870.01.T01:CDS | 40.0% | |
| ATGTACCCAAACCTAGCTAA+TGG | + | Chr3:88824343-88824362 | MsG0380016870.01.T01:intron | 40.0% | |
| CAACACTACGCTAAAAATCC+AGG | + | Chr3:88823736-88823755 | MsG0380016870.01.T01:intron | 40.0% | |
| CTATTGCCTCTGTTAAACAG+TGG | + | Chr3:88825766-88825785 | MsG0380016870.01.T01:intron | 40.0% | |
| GACTGAATTTAATGCCTTGG+TGG | + | Chr3:88826242-88826261 | MsG0380016870.01.T01:CDS | 40.0% | |
| GGTGAATAAATAGAAGGGAC+AGG | - | Chr3:88824920-88824939 | None:intergenic | 40.0% | |
| GTTCTAACTTCTAACACCAG+AGG | + | Chr3:88824714-88824733 | MsG0380016870.01.T01:intron | 40.0% | |
| TGGTAGAGAGAAAATGTCAC+AGG | - | Chr3:88825806-88825825 | None:intergenic | 40.0% | |
| TTATCACGCATTCCAAAGGA+AGG | - | Chr3:88823501-88823520 | None:intergenic | 40.0% | |
| TTATCCTTGCAGGATCAGAA+TGG | + | Chr3:88826018-88826037 | MsG0380016870.01.T01:intron | 40.0% | |
| ! | AGATGGTAAAGATGATGGCT+TGG | + | Chr3:88825156-88825175 | MsG0380016870.01.T01:intron | 40.0% |
| ! | ATGTTTTCCTTACACACAGG+AGG | + | Chr3:88826331-88826350 | MsG0380016870.01.T01:intron | 40.0% |
| ! | GACATCTTTGACTTTCATGC+AGG | + | Chr3:88824658-88824677 | MsG0380016870.01.T01:CDS | 40.0% |
| ! | TTTTACCCAACAGTGAGTCA+AGG | - | Chr3:88826370-88826389 | None:intergenic | 40.0% |
| !! | GTCTGAATGCAGAGTTTTGT+GGG | + | Chr3:88826469-88826488 | MsG0380016870.01.T01:three_prime_UTR | 40.0% |
| !! | TATGATCAGCTCTAGAACAC+TGG | - | Chr3:88825995-88826014 | None:intergenic | 40.0% |
| !! | TTCCTTTGGAATGCGTGATA+AGG | + | Chr3:88823500-88823519 | MsG0380016870.01.T01:CDS | 40.0% |
| !!! | CTGGATTTTTAGCGTAGTGT+TGG | - | Chr3:88823738-88823757 | None:intergenic | 40.0% |
| CATTCCATTCTGATCCTGCA+AGG | - | Chr3:88826025-88826044 | None:intergenic | 45.0% | |
| CGCATCCTCACAGTTCAATT+AGG | + | Chr3:88825255-88825274 | MsG0380016870.01.T01:intron | 45.0% | |
| CTCCTTATCACGCATTCCAA+AGG | - | Chr3:88823505-88823524 | None:intergenic | 45.0% | |
| GAAATACATGGGAGCTGAGA+AGG | - | Chr3:88826110-88826129 | None:intergenic | 45.0% | |
| GGGAGCTGAGAAGGAAATAA+TGG | - | Chr3:88826101-88826120 | None:intergenic | 45.0% | |
| GTGATGCCACTGTTTAACAG+AGG | - | Chr3:88825775-88825794 | None:intergenic | 45.0% | |
| TTAGATGGGGGAAAATGCAC+AGG | - | Chr3:88825560-88825579 | None:intergenic | 45.0% | |
| TTTGCAGCGACAAAAAGCAG+TGG | - | Chr3:88825713-88825732 | None:intergenic | 45.0% | |
| ! | GGTCTGAATGCAGAGTTTTG+TGG | + | Chr3:88826468-88826487 | MsG0380016870.01.T01:three_prime_UTR | 45.0% |
| !!! | ACTGCTTTTTGTCGCTGCAA+AGG | + | Chr3:88825712-88825731 | MsG0380016870.01.T01:CDS | 45.0% |
| !!! | GGTTTTAGGGGTGAAAGAAG+TGG | + | Chr3:88823988-88824007 | MsG0380016870.01.T01:intron | 45.0% |
| AGATACTGTCTTACCGCTCG+TGG | + | Chr3:88824614-88824633 | MsG0380016870.01.T01:intron | 50.0% | |
| AGTAACAAAACCGCCACGAG+CGG | - | Chr3:88824630-88824649 | None:intergenic | 50.0% | |
| ATCAGGATTGCCCCACTGTT+GGG | + | Chr3:88826447-88826466 | MsG0380016870.01.T01:three_prime_UTR | 50.0% | |
| ATCGCCATCAGAGAGTTCAG+AGG | - | Chr3:88824963-88824982 | None:intergenic | 50.0% | |
| CAACAGTGAGTCAAGGAGTG+CGG | - | Chr3:88826363-88826382 | None:intergenic | 50.0% | |
| CTAACCACAGCCACTTGCAT+AGG | - | Chr3:88823325-88823344 | None:intergenic | 50.0% | |
| CTGCATTCAGACCCAACAGT+GGG | - | Chr3:88826461-88826480 | None:intergenic | 50.0% | |
| GCAAGTGCAAAAGAAGCAGC+AGG | - | Chr3:88824472-88824491 | None:intergenic | 50.0% | |
| GCACTCCTTGACTCACTGTT+GGG | + | Chr3:88826362-88826381 | MsG0380016870.01.T01:CDS | 50.0% | |
| GCCAGACTCTGTAATGAGTG+GGG | - | Chr3:88826079-88826098 | None:intergenic | 50.0% | |
| GCTTCTTCCTCCTGTGTGTA+AGG | - | Chr3:88826341-88826360 | None:intergenic | 50.0% | |
| GGCCAGACTCTGTAATGAGT+GGG | - | Chr3:88826080-88826099 | None:intergenic | 50.0% | |
| TCCAAAGGAAGGTTGTTCGC+AGG | - | Chr3:88823490-88823509 | None:intergenic | 50.0% | |
| TCCCCACTCATTACAGAGTC+TGG | + | Chr3:88826075-88826094 | MsG0380016870.01.T01:intron | 50.0% | |
| TCCTGCGAACAACCTTCCTT+TGG | + | Chr3:88823486-88823505 | MsG0380016870.01.T01:CDS | 50.0% | |
| TCTATGGCGCTAATGACAGC+AGG | - | Chr3:88826216-88826235 | None:intergenic | 50.0% | |
| TCTGCATTCAGACCCAACAG+TGG | - | Chr3:88826462-88826481 | None:intergenic | 50.0% | |
| TGCATTCAGACCCAACAGTG+GGG | - | Chr3:88826460-88826479 | None:intergenic | 50.0% | |
| TGGCCAGACTCTGTAATGAG+TGG | - | Chr3:88826081-88826100 | None:intergenic | 50.0% | |
| ! | AGATGATGGCTTGGCAACTG+AGG | + | Chr3:88825165-88825184 | MsG0380016870.01.T01:CDS | 50.0% |
| ! | CAATGGTTGGCTGTGAAGCA+TGG | - | Chr3:88824160-88824179 | None:intergenic | 50.0% |
| ! | GATGATGGCTTGGCAACTGA+GGG | + | Chr3:88825166-88825185 | MsG0380016870.01.T01:CDS | 50.0% |
| !! | TACAGAGCACAGGTGATGGA+TGG | + | Chr3:88823831-88823850 | MsG0380016870.01.T01:CDS | 50.0% |
| !!! | GGTTTTAGGGGTGAAAGACG+CGG | + | Chr3:88823640-88823659 | MsG0380016870.01.T01:intron | 50.0% |
| CATCAGGATTGCCCCACTGT+TGG | + | Chr3:88826446-88826465 | MsG0380016870.01.T01:three_prime_UTR | 55.0% | |
| CGCACTCCTTGACTCACTGT+TGG | + | Chr3:88826361-88826380 | MsG0380016870.01.T01:CDS | 55.0% | |
| GCCACCTCTGAACTCTCTGA+TGG | + | Chr3:88824956-88824975 | MsG0380016870.01.T01:intron | 55.0% | |
| GCCATCAGAGAGTTCAGAGG+TGG | - | Chr3:88824960-88824979 | None:intergenic | 55.0% | |
| GTGGCTTCGAAACCAAAGCG+AGG | - | Chr3:88824941-88824960 | None:intergenic | 55.0% | |
| TACTGTCTTACCGCTCGTGG+CGG | + | Chr3:88824617-88824636 | MsG0380016870.01.T01:CDS | 55.0% | |
| ! | AGAAGGGACAGGCTCTGACT+AGG | - | Chr3:88824909-88824928 | None:intergenic | 55.0% |
| ! | GCGTAGTGTTGGGTCACGAG+AGG | - | Chr3:88823727-88823746 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 88823325 | 88826732 | 88823325 | ID=MsG0380016870.01;Name=MsG0380016870.01 |
| Chr3 | mRNA | 88823325 | 88826732 | 88823325 | ID=MsG0380016870.01.T01;Parent=MsG0380016870.01;Name=MsG0380016870.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0.62|0.77|1|0.62|0.77|9|338|177 |
| Chr3 | exon | 88823325 | 88823339 | 88823325 | ID=MsG0380016870.01.T01:exon:12227;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88823481 | 88823578 | 88823481 | ID=MsG0380016870.01.T01:exon:12228;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88823817 | 88823859 | 88823817 | ID=MsG0380016870.01.T01:exon:12229;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88824439 | 88824521 | 88824439 | ID=MsG0380016870.01.T01:exon:12230;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88824616 | 88824683 | 88824616 | ID=MsG0380016870.01.T01:exon:12231;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88825158 | 88825213 | 88825158 | ID=MsG0380016870.01.T01:exon:12232;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88825674 | 88825733 | 88825674 | ID=MsG0380016870.01.T01:exon:12233;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88826198 | 88826263 | 88826198 | ID=MsG0380016870.01.T01:exon:12234;Parent=MsG0380016870.01.T01 |
| Chr3 | exon | 88826350 | 88826732 | 88826350 | ID=MsG0380016870.01.T01:exon:12235;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88823325 | 88823339 | 88823325 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88823481 | 88823578 | 88823481 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88823817 | 88823859 | 88823817 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88824439 | 88824521 | 88824439 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88824616 | 88824683 | 88824616 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88825158 | 88825213 | 88825158 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88825674 | 88825733 | 88825674 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88826198 | 88826263 | 88826198 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | CDS | 88826350 | 88826394 | 88826350 | ID=MsG0380016870.01.T01:cds;Parent=MsG0380016870.01.T01 |
| Chr3 | three_prime_UTR | 88826395 | 88826732 | 88826395 | ID=MsG0380016870.01.T01:three_prime_utr;Parent=MsG0380016870.01.T01 |
| Gene Sequence |
| Protein sequence |
