AlfalfaGEDB | MsG0780041474.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041474.01

KEGG: K00036
GO: GO:0004345 GO:0006006 GO:0050661 GO:0055114
PFAM: PF00479 PF02781

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041474.01.T01	XP_003626165.1	96.491	570	20	0	2	571	32	601	0	1135

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041474.01.T01	Q93ZW0	67.82	578	159	7	16	571	53	625	0	782

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041474.01.T01	G7KWH1	96.491	570	20	0	2	571	32	601	0.0	1135

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048528.01	MsG0780041474.01	0.832848	7.480232e-56	8.463357e-53
MsG0080048776.01	MsG0780041474.01	0.823395	1.417400e-53	1.218804e-50
MsG0080048801.01	MsG0780041474.01	0.800414	1.457619e-48	6.783067e-46
MsG0080048900.01	MsG0780041474.01	0.824438	8.071544e-54	7.149223e-51
MsG0080048925.01	MsG0780041474.01	0.830995	2.145222e-55	2.297550e-52
MsG0080048987.01	MsG0780041474.01	0.800168	1.635433e-48	7.562870e-46
MsG0080048993.01	MsG0780041474.01	0.833360	5.578452e-56	6.409422e-53
MsG0080049004.01	MsG0780041474.01	0.811996	5.293993e-51	3.325933e-48
MsG0080049053.01	MsG0780041474.01	0.826175	3.134239e-54	2.917441e-51
MsG0080049054.01	MsG0780041474.01	0.843303	1.522368e-58	2.371959e-55

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041474.01.T01	MTR_7g111760	96.491	570	20	0	2	571	32	601	0.0	1135
MsG0780041474.01.T01	MTR_7g111760	98.753	481	6	0	91	571	1	481	0.0	979
MsG0780041474.01.T01	MTR_7g022440	53.099	484	216	4	96	568	105	588	0.0	536
MsG0780041474.01.T01	MTR_0590s0010	50.266	376	147	6	205	568	5	352	1.40e-123	368
MsG0780041474.01.T01	MTR_6g022860	40.313	511	282	10	76	569	10	514	1.66e-122	371
MsG0780041474.01.T01	MTR_7g037440	40.434	507	277	9	80	569	13	511	2.12e-121	368
MsG0780041474.01.T01	MTR_0275s0010	48.864	264	108	3	169	422	1	247	8.76e-80	251
MsG0780041474.01.T01	MTR_4g085930	45.390	141	60	2	428	568	15	138	7.44e-36	131
MsG0780041474.01.T01	MTR_1034s0010	55.882	68	30	0	94	161	91	158	5.05e-21	90.5
MsG0780041474.01.T01	MTR_7g037420	30.366	191	117	5	98	273	10	199	1.06e-14	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041474.01.T01	AT1G09420	67.820	578	159	7	16	571	53	625	0.0	782
MsG0780041474.01.T01	AT1G09420	66.497	588	160	8	16	571	53	635	0.0	772
MsG0780041474.01.T01	AT5G13110	52.823	496	224	3	83	568	94	589	0.0	551
MsG0780041474.01.T01	AT1G24280	54.470	481	209	3	98	568	112	592	0.0	549
MsG0780041474.01.T01	AT5G35790	52.795	483	218	3	96	568	88	570	0.0	541
MsG0780041474.01.T01	AT3G27300	42.254	497	257	13	93	569	26	512	1.03e-125	379
MsG0780041474.01.T01	AT3G27300	42.254	497	257	13	93	569	26	512	1.03e-125	379
MsG0780041474.01.T01	AT3G27300	42.254	497	257	13	93	569	26	512	1.03e-125	379
MsG0780041474.01.T01	AT3G27300	42.254	497	257	13	93	569	80	566	7.71e-125	379
MsG0780041474.01.T01	AT3G27300	42.254	497	257	13	93	569	97	583	1.04e-124	379

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Find 157 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCTATTACATTTAGT+TGG	0.389350	7:+91378142	MsG0780041474.01.T01:three_prime_UTR
AAAGTTGATAAGTGCTTAGA+TGG	0.406536	7:+91376670	MsG0780041474.01.T01:CDS
AACAACAAGGTTCCAGGATT+AGG	0.351320	7:+91377328	MsG0780041474.01.T01:CDS
AACAATTGCATTGCTTGCCA+TGG	0.498682	7:+91375409	MsG0780041474.01.T01:CDS
AACATCCATGGGAAAGGCCA+AGG	0.564064	7:-91373430	None:intergenic
AACCAATATGATCACCTTCC+CGG	0.365966	7:-91375207	None:intergenic
AACTTACATAGATAATGTGC+AGG	0.579720	7:+91375065	MsG0780041474.01.T01:CDS
AAGATATTGTGTCAGCCTTT+GGG	0.398259	7:-91374733	None:intergenic
AAGCAGTGCTCAGACCCAAA+AGG	0.522886	7:+91374659	MsG0780041474.01.T01:CDS
AAGGCTAACTGGTGGTTCCA+TGG	0.545072	7:-91375426	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTGTTGAATTGTACCT+CGG	-	Chr7:91373562-91373581	None:intergenic	30.0%
AACTTACATAGATAATGTGC+AGG	+	Chr7:91375065-91375084	MsG0780041474.01.T01:CDS	30.0%
AAGAAGAAAATACTGGAACA+GGG	-	Chr7:91376866-91376885	None:intergenic	30.0%
AATCCTTCATATGCTAACTT+GGG	+	Chr7:91374005-91374024	MsG0780041474.01.T01:intron	30.0%
AATGTATTTGTGAGACTCAT+TGG	-	Chr7:91373080-91373099	None:intergenic	30.0%
ACAGCTTATTATCTACTTCA+GGG	+	Chr7:91374561-91374580	MsG0780041474.01.T01:intron	30.0%
ACGTAAATAGAAATGGAGAT+TGG	-	Chr7:91372803-91372822	None:intergenic	30.0%
AGAAAGGTAGAAAATCCTAT+TGG	-	Chr7:91374598-91374617	None:intergenic	30.0%
AGAATTGAATCTGCTTTACA+AGG	+	Chr7:91377369-91377388	MsG0780041474.01.T01:CDS	30.0%
ATAACAAGTGAATGAAGATG+TGG	-	Chr7:91373198-91373217	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	91372582	91378192	91372582	ID=MsG0780041474.01;Name=MsG0780041474.01
Chr7	mRNA	91372582	91378192	91372582	ID=MsG0780041474.01.T01;Parent=MsG0780041474.01;Name=MsG0780041474.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|1\|0.90\|1\|1\|1\|11\|436\|571
Chr7	exon	91372582	91372786	91372582	ID=MsG0780041474.01.T01:exon:18680;Parent=MsG0780041474.01.T01
Chr7	exon	91373379	91373563	91373379	ID=MsG0780041474.01.T01:exon:18681;Parent=MsG0780041474.01.T01
Chr7	exon	91373826	91373920	91373826	ID=MsG0780041474.01.T01:exon:18682;Parent=MsG0780041474.01.T01
Chr7	exon	91374321	91374435	91374321	ID=MsG0780041474.01.T01:exon:18683;Parent=MsG0780041474.01.T01
Chr7	exon	91374582	91374787	91374582	ID=MsG0780041474.01.T01:exon:18684;Parent=MsG0780041474.01.T01
Chr7	exon	91374978	91375086	91374978	ID=MsG0780041474.01.T01:exon:18685;Parent=MsG0780041474.01.T01
Chr7	exon	91375177	91375214	91375177	ID=MsG0780041474.01.T01:exon:18686;Parent=MsG0780041474.01.T01
Chr7	exon	91375355	91375475	91375355	ID=MsG0780041474.01.T01:exon:18687;Parent=MsG0780041474.01.T01
Chr7	exon	91376592	91376794	91376592	ID=MsG0780041474.01.T01:exon:18688;Parent=MsG0780041474.01.T01
Chr7	exon	91377195	91377395	91377195	ID=MsG0780041474.01.T01:exon:18689;Parent=MsG0780041474.01.T01
Chr7	exon	91377519	91378192	91377519	ID=MsG0780041474.01.T01:exon:18690;Parent=MsG0780041474.01.T01
Chr7	CDS	91372582	91372786	91372582	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91373379	91373563	91373379	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91373826	91373920	91373826	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91374321	91374435	91374321	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91374582	91374787	91374582	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91374978	91375086	91374978	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91375177	91375214	91375177	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91375355	91375475	91375355	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91376592	91376794	91376592	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91377195	91377395	91377195	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	CDS	91377519	91377756	91377519	ID=MsG0780041474.01.T01:cds;Parent=MsG0780041474.01.T01
Chr7	three_prime_UTR	91377757	91378192	91377757	ID=MsG0780041474.01.T01:three_prime_utr;Parent=MsG0780041474.01.T01

Gene Sequence

>MsG0780041474.01.T01

TTGTTGCAGGTTGCATCAAGCAGCTTTCATTCAGTAGCAAGTATTGGAGGTTCTACTTTCTGTCGAAGATTCCGTGGTTTCAAACTGTGGATACTTGATAGACTCAACCTTCAACATCCCAAGCAGCTTAGCTATAGAAATCACTTCAAGAATGTAAAAGGATCAATTTCTGATTCATCTCATCTACCTGATGATGATGATGCTGATAGTAAGGTCACTTCTTCCTTGGAGTCTCCATCTTTGCTGCAAACAAGTCCCTTGGCCTTTCCCATGGATGTTAGTAGAGAACCTTCACTTTGTATTGCTATCATAGGAGCCACTGGTGAGCTTGCGAGGGGGAAGATTTTTCCAGCTTTATTTGCACTCTACTATAGTGGCTTTCTCCCCGAGAATGTGGCCATTTTTGGGTATTCAAGGAAGAATATAACTGACGAAGACCTACGATCCATTATTGCTTCGACATTAACATGTCGAGTTGATCATCAGCAGGATTGTGGGGACAAAATAGAAGCTTTCCTTGATAGAACACACTACATCAATGGAGGTTACGACAACAAACATGGGATGTCCTTACTGAAGGCCAGAATGGAGCAGATCGAGGGAAGATCCAAAACCAATAGGATTTTCTACCTTTCTGTGCCACAAGAAGCACTTTTGGACGTTGCTTCATGTCTTGCAAGCAGTGCTCAGACCCAAAAGGGATGGAATCGCATAATAATCGAGAAGCCATTTGGCTTTGATGCTCTCTCTTCCCAAAGGCTGACACAATATCTTCTCTCGAAGTTTGAGGAAAAGCAACTATATAGGATTGATCATCTTCTAGGAAGGAATCTCATTGAAAATCTCACAGTTCTAAGGTTTGCCAATCTAGTTTTTGAGCCGCTATGGAGTCGAACTTACATAGATAATGTGCAGGTCATTTTATCAGAGGACTTGGCTGTGCATCCGGGAAGGTATTTCGGTGGCTATGGGATTATCCGTGATATTGTTCACAGCCATGTGCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAGTTAGCCTTGATGGAGAAGATATTCGAAATGAAAAGGTCAAGGTTTTAAGATCAATTCGCCAATTGGAGCCCAAGGATGTCATTCTTGGCCAATATAAATCAAGTAGCAGAGACAAAGTTGATAAGTGCTTAGATGGTCCCACACCTACTTATTTCGCTGCTGCACTATACATTGACAATGCACGATGGGATGGTGTACCGTTTTTGGTTAAAACAGGCTTGGGACTCATCAAACACCAAATGGAGATACGAATTCAATTTCGACATGTTCCAGGAAATGTTTACCGGGAATGCATTGGGCACAATATTGGCCGTGCCACAAATGAGCTCATTCTTCGTGATGATCCTGATGAAGCCATTCTGGTGAGAGTTAACAACAAGGTTCCAGGATTAGGCTTAAAACTGGACTCTTCAGAATTGAATCTGCTTTACAAGGACAAGTACAACATTGAGGTGCCGGATTCATACGAGCATCTTCTGCTTGATGTCATTGATGGGGATAATCATCTGTTTATGAGAAGCGATGAGCTGGCAGCTGCATGGAACATTCTAACTCTGATTCTGAATGAGATAGACAAGGACAATGTATCAGTGGAGCTTTATGAATTGGGGGGTCGCGGTCCGGTTGGAGCATACTACCTCTGGGCAAAACACGCTGTCCGTTGGGTAGAGGACTAG

Protein sequence

>MsG0780041474.01.T01

LLQVASSSFHSVASIGGSTFCRRFRGFKLWILDRLNLQHPKQLSYRNHFKNVKGSISDSSHLPDDDDADSKVTSSLESPSLLQTSPLAFPMDVSREPSLCIAIIGATGELARGKIFPALFALYYSGFLPENVAIFGYSRKNITDEDLRSIIASTLTCRVDHQQDCGDKIEAFLDRTHYINGGYDNKHGMSLLKARMEQIEGRSKTNRIFYLSVPQEALLDVASCLASSAQTQKGWNRIIIEKPFGFDALSSQRLTQYLLSKFEEKQLYRIDHLLGRNLIENLTVLRFANLVFEPLWSRTYIDNVQVILSEDLAVHPGRYFGGYGIIRDIVHSHVLQTIALLAMEPPVSLDGEDIRNEKVKVLRSIRQLEPKDVILGQYKSSSRDKVDKCLDGPTPTYFAAALYIDNARWDGVPFLVKTGLGLIKHQMEIRIQFRHVPGNVYRECIGHNIGRATNELILRDDPDEAILVRVNNKVPGLGLKLDSSELNLLYKDKYNIEVPDSYEHLLLDVIDGDNHLFMRSDELAAAWNILTLILNEIDKDNVSVELYELGGRGPVGAYYLWAKHAVRWVED*