AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023558.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023558.01.T01 MTR_8g100120 97.248 327 6 1 28 354 1 324 0.0 657
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023558.01.T01 AT4G25080 73.810 294 66 4 66 354 39 326 1.46e-155 440
MsG0480023558.01.T01 AT4G25080 73.810 294 66 4 66 354 25 312 3.65e-155 438
MsG0480023558.01.T01 AT4G25080 73.810 294 66 4 66 354 25 312 3.65e-155 438
MsG0480023558.01.T01 AT4G25080 73.810 294 66 4 66 354 25 312 3.65e-155 438
MsG0480023558.01.T01 AT4G25080 73.810 294 66 4 66 354 25 312 3.65e-155 438
MsG0480023558.01.T01 AT4G25080 78.088 251 49 2 104 354 1 245 3.37e-145 410

Find 127 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGCTCACCTTGCTTCTT+TGG 0.174968 4:-86899565 MsG0480023558.01.T01:CDS
TGTTCGCGTCGTCGTCTTTC+CGG 0.201498 4:+86901101 None:intergenic
CTGGCATCGAGTTTCAAATT+TGG 0.243537 4:+86899123 None:intergenic
CAACTTGTGTCCAGTGAAAA+TGG 0.270170 4:-86899708 MsG0480023558.01.T01:CDS
GGATGATGAGAACGCCATTT+TGG 0.276616 4:+86901352 None:intergenic
CGCGATTGTTGTGCCGTCTA+TGG 0.289010 4:+86901178 None:intergenic
GGTGAGTGATTTAGAGAGTT+TGG 0.296867 4:-86899658 MsG0480023558.01.T01:CDS
TTTGTTGTGGGTGGCGGGAG+AGG 0.307225 4:+86901265 None:intergenic
ATAGAGTTCAACGGGATATT+AGG 0.312977 4:-86900974 MsG0480023558.01.T01:CDS
TGTGATGCTGGTTGTGGTAC+TGG 0.330850 4:-86900876 MsG0480023558.01.T01:CDS
AAGTAGGACCCACGAGAATC+AGG 0.337401 4:-86901469 None:intergenic
TCACTCAAATCAAACCAAAA+TGG 0.348627 4:-86901366 MsG0480023558.01.T01:CDS
GAATGCTATCTTATCTTTCC+TGG 0.348744 4:-86901430 MsG0480023558.01.T01:CDS
GCATCATAATAAAATGTCTT+AGG 0.351793 4:+86899513 None:intergenic
CAACGATGGAAGAAGATTTA+CGG 0.365499 4:-86901014 MsG0480023558.01.T01:CDS
GAAAGATGAAGGGCCACTTC+AGG 0.373746 4:-86900910 MsG0480023558.01.T01:CDS
GTTCGCGTCGTCGTCTTTCC+GGG 0.385307 4:+86901102 None:intergenic
TTGTGGGTGGCGGGAGAGGA+GGG 0.387295 4:+86901269 None:intergenic
GGAAAGACGACGACGCGAAC+AGG 0.395017 4:-86901099 MsG0480023558.01.T01:CDS
GGAATATAATATACATATCC+AGG 0.395360 4:+86899208 None:intergenic
ATACATATCCAGGGGATCAT+AGG 0.401558 4:+86899218 None:intergenic
GCAACAGCCGCCGACGTTAC+CGG 0.402705 4:-86901203 MsG0480023558.01.T01:CDS
AATATAATCAATGCATCAAC+TGG 0.408032 4:+86899104 None:intergenic
GTTGTGGGTGGCGGGAGAGG+AGG 0.411029 4:+86901268 None:intergenic
GGTGTTACTATTTGTGATGC+TGG 0.416395 4:-86900888 MsG0480023558.01.T01:CDS
AATGGCTTACAATATACATT+AGG 0.416961 4:+86899268 None:intergenic
AAAGGGCGTTGCGCAAGGTT+GGG 0.417723 4:-86899413 MsG0480023558.01.T01:CDS
GGTTGCTGAAGCTGAGAAAC+AGG 0.419084 4:-86900787 MsG0480023558.01.T01:intron
TGAGAGTGTGAGTGTGAGTT+GGG 0.425010 4:+86901386 None:intergenic
TAAGAGTTTGTTGTGGGTGG+CGG 0.431253 4:+86901259 None:intergenic
AGGGTTGGAGAGTTGTTCCC+TGG 0.435316 4:-86899483 MsG0480023558.01.T01:CDS
GTGAGAGTGTGAGTGTGAGT+TGG 0.444943 4:+86901385 None:intergenic
GTAAGCGGTGGCTTCGTCGC+TGG 0.445724 4:-86901152 MsG0480023558.01.T01:CDS
TTACAGATGTTGAAAGATGA+AGG 0.450243 4:-86900921 MsG0480023558.01.T01:CDS
AAATCACTCACCACAAACTT+TGG 0.452354 4:+86899669 None:intergenic
AAGTGATGATATTGTTATCC+AGG 0.465411 4:+86901412 None:intergenic
CTGGGCCTTCCAAGGCAACC+AGG 0.466683 4:-86899464 MsG0480023558.01.T01:CDS
TGATGTTAATAGAGTTCAAC+GGG 0.468337 4:-86900982 MsG0480023558.01.T01:CDS
ACTATTTGTGATGCTGGTTG+TGG 0.469095 4:-86900882 MsG0480023558.01.T01:CDS
GAAAGGGCGTTGCGCAAGGT+TGG 0.471715 4:-86899414 MsG0480023558.01.T01:CDS
CTGGTTGCCTTGGAAGGCCC+AGG 0.472074 4:+86899465 None:intergenic
AGTGATTTAGAGAGTTTGGA+TGG 0.476634 4:-86899654 MsG0480023558.01.T01:CDS
GGGAGTATTTCAACAACAAC+GGG 0.479355 4:-86901040 MsG0480023558.01.T01:CDS
AAAGATGAAGGGCCACTTCA+GGG 0.481133 4:-86900909 MsG0480023558.01.T01:CDS
GTCGTCTTTCCGGGTCTGAA+AGG 0.481970 4:+86901111 None:intergenic
AAGAGTTTGTTGTGGGTGGC+GGG 0.483942 4:+86901260 None:intergenic
TAAAGCATTCTCAACAGTCT+TGG 0.484120 4:+86900941 None:intergenic
GGTTGTTAAGAGTTTGTTGT+GGG 0.485748 4:+86901253 None:intergenic
GTTCAACGGGATATTAGGTT+GGG 0.491602 4:-86900969 MsG0480023558.01.T01:CDS
AGGATAACATAGCATACAAA+AGG 0.495144 4:+86899238 None:intergenic
AGTTCAACGGGATATTAGGT+TGG 0.497728 4:-86900970 MsG0480023558.01.T01:CDS
TTTATTATGATGCACTAAAG+AGG 0.498288 4:-86899503 MsG0480023558.01.T01:CDS
TTACTTTGCCAAGCTTATTG+AGG 0.499395 4:-86899352 MsG0480023558.01.T01:CDS
TTCTGAAGCAGATGTTGAAA+GGG 0.501417 4:-86899430 MsG0480023558.01.T01:CDS
TCGTCTTTCCGGGTCTGAAA+GGG 0.501629 4:+86901112 None:intergenic
ACCACAAACTTTGGCATCGC+AGG 0.503004 4:+86899678 None:intergenic
AAGATATGCCCTGGTTGCCT+TGG 0.503839 4:+86899455 None:intergenic
AAACTTACCTCTGAATCCTC+TGG 0.506783 4:+86899310 None:intergenic
CAGCATCATTTACGCTAAGA+AGG 0.507758 4:+86899187 None:intergenic
TCGATTCCGTTGGCGAAGGA+AGG 0.509084 4:-86900846 MsG0480023558.01.T01:CDS
ACGACGACGCGAACAGGCGG+AGG 0.509203 4:-86901093 MsG0480023558.01.T01:CDS
ACCTGCGATGCCAAAGTTTG+TGG 0.512251 4:-86899679 MsG0480023558.01.T01:CDS
GGTAACGTCGGCGGCTGTTG+CGG 0.517328 4:+86901205 None:intergenic
ATTCTGAAGCAGATGTTGAA+AGG 0.518414 4:-86899431 MsG0480023558.01.T01:CDS
TATGCCCTGGTTGCCTTGGA+AGG 0.522393 4:+86899459 None:intergenic
TGGTTCTCTTTCGATTCCGT+TGG 0.522603 4:-86900856 MsG0480023558.01.T01:CDS
ACTTCTCTCCCTTTCAGACC+CGG 0.523310 4:-86901120 MsG0480023558.01.T01:CDS
TATGATGCACTAAAGAGGGT+TGG 0.524966 4:-86899498 MsG0480023558.01.T01:CDS
TCTTTCGATTCCGTTGGCGA+AGG 0.532526 4:-86900850 MsG0480023558.01.T01:CDS
GTTGTTCCCTGGGCCTTCCA+AGG 0.535217 4:-86899472 MsG0480023558.01.T01:CDS
GGGCGTTGCGCAAGGTTGGG+TGG 0.537359 4:-86899410 MsG0480023558.01.T01:CDS
GTCTATGGCGCCGGTAACGT+CGG 0.538591 4:+86901193 None:intergenic
GCGGCTGTTGCGGTTGAGAG+TGG 0.540172 4:+86901215 None:intergenic
TTATTATGATGCACTAAAGA+GGG 0.543982 4:-86899502 MsG0480023558.01.T01:CDS
GCTGTTGCGGTTGAGAGTGG+AGG 0.545699 4:+86901218 None:intergenic
CGCGAACAGGCGGAGGAAGT+AGG 0.545859 4:-86901086 MsG0480023558.01.T01:CDS
TCCCATCTGCTTTACTCTGA+GGG 0.551667 4:+86899589 None:intergenic
TTTCTCAGCTTCAGCAACCA+TGG 0.556058 4:+86900791 None:intergenic
GGGTTGGAGAGTTGTTCCCT+GGG 0.560240 4:-86899482 MsG0480023558.01.T01:CDS
AGGAACAGCCTCAATAAGCT+TGG 0.560754 4:+86899344 None:intergenic
TGTTGAAAGGGCGTTGCGCA+AGG 0.560806 4:-86899418 MsG0480023558.01.T01:CDS
GGCAGAAAATTCATCACCCA+AGG 0.565337 4:+86899068 None:intergenic
AGTAGGACCCACGAGAATCA+GGG 0.566735 4:-86901468 None:intergenic
AAGACGACGACGCGAACAGG+CGG 0.569936 4:-86901096 MsG0480023558.01.T01:CDS
TGGTTGCCTTGGAAGGCCCA+GGG 0.570031 4:+86899466 None:intergenic
TGTTGTGCCGTCTATGGCGC+CGG 0.571715 4:+86901184 None:intergenic
TGGGCCTTCCAAGGCAACCA+GGG 0.571898 4:-86899463 MsG0480023558.01.T01:CDS
TGGTTGTTAAGAGTTTGTTG+TGG 0.572241 4:+86901252 None:intergenic
GACGTTACCGGCGCCATAGA+CGG 0.574011 4:-86901191 MsG0480023558.01.T01:CDS
ACAACAACGGGTTTCAACGA+TGG 0.574622 4:-86901028 MsG0480023558.01.T01:CDS
TGTTAAGAGTTTGTTGTGGG+TGG 0.574727 4:+86901256 None:intergenic
GAGTGGAGGGATGGCGAATG+TGG 0.575620 4:+86901232 None:intergenic
TATGTTATCCTATGATCCCC+TGG 0.581885 4:-86899226 MsG0480023558.01.T01:three_prime_UTR
AGGGAGAGAATGTAGCGAAA+CGG 0.590209 4:+86901288 None:intergenic
TACCCTCAGAGTAAAGCAGA+TGG 0.593009 4:-86899591 MsG0480023558.01.T01:CDS
ATCCCATCTGCTTTACTCTG+AGG 0.595461 4:+86899588 None:intergenic
AGTGAGTCCAGAGGATTCAG+AGG 0.601420 4:-86899317 MsG0480023558.01.T01:three_prime_UTR
TACAGATGTTGAAAGATGAA+GGG 0.602628 4:-86900920 MsG0480023558.01.T01:CDS
CAAATAGTAACACCCTGAAG+TGG 0.608139 4:+86900897 None:intergenic
CTGTTGCGGTTGAGAGTGGA+GGG 0.608229 4:+86901219 None:intergenic
GAATATAATATACATATCCA+GGG 0.609774 4:+86899209 None:intergenic
GGGTGGACGATAAAGAAGAA+AGG 0.614466 4:-86899393 MsG0480023558.01.T01:CDS
TATGGCGCCGGTAACGTCGG+CGG 0.621518 4:+86901196 None:intergenic
ACGAGAATCAGGGAAAAGCA+TGG 0.621841 4:-86901458 MsG0480023558.01.T01:five_prime_UTR
TAGTGATATATCAGCTGCCA+TGG 0.622099 4:-86900808 MsG0480023558.01.T01:CDS
ACGGCACCTTCCTTCGCCAA+CGG 0.623201 4:+86900840 None:intergenic
ACAACAATCGCGGTCGTAAG+CGG 0.623303 4:-86901167 MsG0480023558.01.T01:CDS
AGGGAGTATTTCAACAACAA+CGG 0.626963 4:-86901041 MsG0480023558.01.T01:CDS
ACCCTCAGAGTAAAGCAGAT+GGG 0.629699 4:-86899590 MsG0480023558.01.T01:CDS
GTGATGACAAAGAAGTTGTG+AGG 0.636702 4:-86901061 MsG0480023558.01.T01:CDS
TGCGGTTGAGAGTGGAGGGA+TGG 0.637524 4:+86901223 None:intergenic
AACAAAGAGAGAAGACCACA+TGG 0.638571 4:+86901331 None:intergenic
ATGATGTTAATAGAGTTCAA+CGG 0.639280 4:-86900983 MsG0480023558.01.T01:CDS
TTCAGAATGAAGATATGCCC+TGG 0.639551 4:+86899446 None:intergenic
TGATGACAAAGAAGTTGTGA+GGG 0.644653 4:-86901060 MsG0480023558.01.T01:CDS
ACAATCGCGGTCGTAAGCGG+TGG 0.652916 4:-86901164 MsG0480023558.01.T01:CDS
ATCCTCTGGACTCACTACAT+AGG 0.659752 4:+86899324 None:intergenic
GTCTGAAAGGGAGAGAAGTG+CGG 0.675558 4:+86901124 None:intergenic
CATAGACGGCACAACAATCG+CGG 0.676803 4:-86901177 MsG0480023558.01.T01:CDS
GGATGGATTGTACGATACAG+TGG 0.678861 4:-86899637 MsG0480023558.01.T01:CDS
GAACAGGCGGAGGAAGTAGG+CGG 0.681114 4:-86901083 MsG0480023558.01.T01:CDS
TTCCTATGTAGTGAGTCCAG+AGG 0.689702 4:-86899326 MsG0480023558.01.T01:exon
TATATCACTAGCACAAACAA+CGG 0.690655 4:+86900821 None:intergenic
AATATAATATACATATCCAG+GGG 0.707394 4:+86899210 None:intergenic
TGGCGTTCTCATCATCCATG+TGG 0.707884 4:-86901346 MsG0480023558.01.T01:CDS
AAAGGGAGAGAAGTGCGGTG+AGG 0.719705 4:+86901129 None:intergenic
GGTAATGAATCATAACATCG+AGG 0.752533 4:+86899610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTAATATGTAA+CGG - Chr4:86901387-86901406 MsG0480023558.01.T01:CDS 10.0%
!! TCAAAAATCATAAATATCAA+AGG + Chr4:86899794-86899813 None:intergenic 15.0%
!! TTATATAAATAGGAAGATTA+TGG - Chr4:86900252-86900271 MsG0480023558.01.T01:intron 15.0%
!! AATATAATATACATATCCAG+GGG + Chr4:86901334-86901353 None:intergenic 20.0%
!! AGAGAAGGATTTATATAAAT+AGG - Chr4:86900242-86900261 MsG0480023558.01.T01:intron 20.0%
!! GAATATAATATACATATCCA+GGG + Chr4:86901335-86901354 None:intergenic 20.0%
!! GACAATAATAATGTAATCAT+TGG - Chr4:86900631-86900650 MsG0480023558.01.T01:intron 20.0%
!!! ATTTTATCCTATCTAAGTTT+TGG + Chr4:86899917-86899936 None:intergenic 20.0%
!!! CGCAACTTTTTTTTTTTTTA+GGG + Chr4:86900338-86900357 None:intergenic 20.0%
!!! GCAACTTTTTTTTTTTTTAG+GGG + Chr4:86900337-86900356 None:intergenic 20.0%
!!! TCGCAACTTTTTTTTTTTTT+AGG + Chr4:86900339-86900358 None:intergenic 20.0%
! AATATAATCAATGCATCAAC+TGG + Chr4:86901440-86901459 None:intergenic 25.0%
! AATGGCTTACAATATACATT+AGG + Chr4:86901276-86901295 None:intergenic 25.0%
! ATGATGTTAATAGAGTTCAA+CGG - Chr4:86899558-86899577 MsG0480023558.01.T01:CDS 25.0%
! CAATTGATGTTTGTAAACAT+CGG + Chr4:86900138-86900157 None:intergenic 25.0%
! GCATCATAATAAAATGTCTT+AGG + Chr4:86901031-86901050 None:intergenic 25.0%
! GGAATATAATATACATATCC+AGG + Chr4:86901336-86901355 None:intergenic 25.0%
! TTATTATGATGCACTAAAGA+GGG - Chr4:86901039-86901058 MsG0480023558.01.T01:CDS 25.0%
! TTATTGTCAGACATTGTAAA+AGG + Chr4:86900619-86900638 None:intergenic 25.0%
! TTTATTATGATGCACTAAAG+AGG - Chr4:86901038-86901057 MsG0480023558.01.T01:CDS 25.0%
!! CGTGAATATCATTTTGTAAA+CGG + Chr4:86900111-86900130 None:intergenic 25.0%
!! TTTAGACAATTTGAAATACC+CGG + Chr4:86900714-86900733 None:intergenic 25.0%
!!! ATTTATTTTGCTACTTCCTT+GGG - Chr4:86901457-86901476 MsG0480023558.01.T01:five_prime_UTR 25.0%
!!! GTTTTGAATGAATTTGACTT+TGG + Chr4:86900738-86900757 None:intergenic 25.0%
!!! TAAGTTGTTTTTGTTAGAGA+AGG - Chr4:86900227-86900246 MsG0480023558.01.T01:intron 25.0%
!!! TATTTATTTTGCTACTTCCT+TGG - Chr4:86901456-86901475 MsG0480023558.01.T01:five_prime_UTR 25.0%
!!! TGCTTTGATAAAAAGTGTTT+TGG + Chr4:86900483-86900502 None:intergenic 25.0%
!!! TTGATAAAAAGTGTTTTGGT+AGG + Chr4:86900479-86900498 None:intergenic 25.0%
!!! TTTTTTTTTTAGGGGAATAG+AGG + Chr4:86900329-86900348 None:intergenic 25.0%
AAGTGATGATATTGTTATCC+AGG + Chr4:86899132-86899151 None:intergenic 30.0%
AGGATAACATAGCATACAAA+AGG + Chr4:86901306-86901325 None:intergenic 30.0%
ATCATGTTAGAGGTTAGAAT+AGG - Chr4:86900188-86900207 MsG0480023558.01.T01:intron 30.0%
CATACAAAAGGACACAAAAA+TGG + Chr4:86901294-86901313 None:intergenic 30.0%
CTAAAATAACGCTTCACATA+CGG + Chr4:86899863-86899882 None:intergenic 30.0%
GTCATGGGTCAAATTTAATA+GGG + Chr4:86900530-86900549 None:intergenic 30.0%
TACAGATGTTGAAAGATGAA+GGG - Chr4:86899621-86899640 MsG0480023558.01.T01:CDS 30.0%
TATATCACTAGCACAAACAA+CGG + Chr4:86899723-86899742 None:intergenic 30.0%
TCACTCAAATCAAACCAAAA+TGG - Chr4:86899175-86899194 MsG0480023558.01.T01:three_prime_UTR 30.0%
TCATGTTAGAGGTTAGAATA+GGG - Chr4:86900189-86900208 MsG0480023558.01.T01:intron 30.0%
TGAATATCGTAGAACAATAG+CGG - Chr4:86899993-86900012 MsG0480023558.01.T01:intron 30.0%
TGATGTTAATAGAGTTCAAC+GGG - Chr4:86899559-86899578 MsG0480023558.01.T01:CDS 30.0%
TTACAGATGTTGAAAGATGA+AGG - Chr4:86899620-86899639 MsG0480023558.01.T01:CDS 30.0%
TTCTGTTCCATTCAATTCTT+AGG - Chr4:86900433-86900452 MsG0480023558.01.T01:intron 30.0%
! ATTGACTCCAAAACTTAGAT+AGG - Chr4:86899907-86899926 MsG0480023558.01.T01:intron 30.0%
AAATCACTCACCACAAACTT+TGG + Chr4:86900875-86900894 None:intergenic 35.0%
AACCTCTAACATGATGTGTT+AGG + Chr4:86900183-86900202 None:intergenic 35.0%
AGTGATTTAGAGAGTTTGGA+TGG - Chr4:86900887-86900906 MsG0480023558.01.T01:CDS 35.0%
ATAGAGTTCAACGGGATATT+AGG - Chr4:86899567-86899586 MsG0480023558.01.T01:CDS 35.0%
ATAGCTGTTATTCGACAACA+CGG - Chr4:86899960-86899979 MsG0480023558.01.T01:intron 35.0%
ATGAGAGAATCTCTCCTTAA+AGG + Chr4:86900381-86900400 None:intergenic 35.0%
ATTAAATTTGACCCATGACC+AGG - Chr4:86900531-86900550 MsG0480023558.01.T01:intron 35.0%
CAACGATGGAAGAAGATTTA+CGG - Chr4:86899527-86899546 MsG0480023558.01.T01:CDS 35.0%
GAATGCTATCTTATCTTTCC+TGG - Chr4:86899111-86899130 MsG0480023558.01.T01:three_prime_UTR 35.0%
GGTAATGAATCATAACATCG+AGG + Chr4:86900934-86900953 None:intergenic 35.0%
GGTCATGGGTCAAATTTAAT+AGG + Chr4:86900531-86900550 None:intergenic 35.0%
TGATGACAAAGAAGTTGTGA+GGG - Chr4:86899481-86899500 MsG0480023558.01.T01:CDS 35.0%
TGTCAGACATTGTAAAAGGA+GGG + Chr4:86900615-86900634 None:intergenic 35.0%
TTAAATTTGACCCATGACCA+GGG - Chr4:86900532-86900551 MsG0480023558.01.T01:intron 35.0%
TTACTTTGCCAAGCTTATTG+AGG - Chr4:86901189-86901208 MsG0480023558.01.T01:CDS 35.0%
TTAGGGACCTAAGAATTGAA+TGG + Chr4:86900443-86900462 None:intergenic 35.0%
TTCCTAACACATCATGTTAG+AGG - Chr4:86900178-86900197 MsG0480023558.01.T01:intron 35.0%
TTGTCAGACATTGTAAAAGG+AGG + Chr4:86900616-86900635 None:intergenic 35.0%
TTGTGAAAGGGAAACCTTTA+AGG - Chr4:86900364-86900383 MsG0480023558.01.T01:intron 35.0%
! AAGTGTGTTTTTCACTTTGC+AGG - Chr4:86900802-86900821 MsG0480023558.01.T01:CDS 35.0%
! GGTAAGTTTTGCATCATTAG+AGG - Chr4:86901245-86901264 MsG0480023558.01.T01:CDS 35.0%
! TAAAGCATTCTCAACAGTCT+TGG + Chr4:86899603-86899622 None:intergenic 35.0%
! TGTGTTAGGAAGCACAATTA+CGG + Chr4:86900169-86900188 None:intergenic 35.0%
!! AGGGAGTATTTCAACAACAA+CGG - Chr4:86899500-86899519 MsG0480023558.01.T01:CDS 35.0%
!! ATTCTGAAGCAGATGTTGAA+AGG - Chr4:86901110-86901129 MsG0480023558.01.T01:CDS 35.0%
!! GGTTGTTAAGAGTTTGTTGT+GGG + Chr4:86899291-86899310 None:intergenic 35.0%
!! TGGTTGTTAAGAGTTTGTTG+TGG + Chr4:86899292-86899311 None:intergenic 35.0%
!! TTCTGAAGCAGATGTTGAAA+GGG - Chr4:86901111-86901130 MsG0480023558.01.T01:CDS 35.0%
!!! CAACTCATTTTGAAGTGGAA+GGG - Chr4:86900065-86900084 MsG0480023558.01.T01:intron 35.0%
!!! CGAAACGGTTAGTTTTGTTT+GGG + Chr4:86899241-86899260 None:intergenic 35.0%
AAACTTACCTCTGAATCCTC+TGG + Chr4:86901234-86901253 None:intergenic 40.0%
AACAAAGAGAGAAGACCACA+TGG + Chr4:86899213-86899232 None:intergenic 40.0%
AGTTCAACGGGATATTAGGT+TGG - Chr4:86899571-86899590 MsG0480023558.01.T01:CDS 40.0%
AGTTGCGACTCTATTGTGAA+AGG - Chr4:86900351-86900370 MsG0480023558.01.T01:intron 40.0%
ATACATATCCAGGGGATCAT+AGG + Chr4:86901326-86901345 None:intergenic 40.0%
CAAATAGTAACACCCTGAAG+TGG + Chr4:86899647-86899666 None:intergenic 40.0%
CAACTTGTGTCCAGTGAAAA+TGG - Chr4:86900833-86900852 MsG0480023558.01.T01:CDS 40.0%
CAGCATCATTTACGCTAAGA+AGG + Chr4:86901357-86901376 None:intergenic 40.0%
CCAGACAAATTTGGTCTCTA+AGG + Chr4:86900563-86900582 None:intergenic 40.0%
CCTTAGAGACCAAATTTGTC+TGG - Chr4:86900560-86900579 MsG0480023558.01.T01:intron 40.0%
CCTTTCAGGATCAGAACTAA+GGG + Chr4:86900670-86900689 None:intergenic 40.0%
CTTTCAGGATCAGAACTAAG+GGG + Chr4:86900669-86900688 None:intergenic 40.0%
GAACACACACCAGACAAATT+TGG + Chr4:86900572-86900591 None:intergenic 40.0%
GGTGAGTGATTTAGAGAGTT+TGG - Chr4:86900883-86900902 MsG0480023558.01.T01:CDS 40.0%
GTCAGACATTGTAAAAGGAG+GGG + Chr4:86900614-86900633 None:intergenic 40.0%
GTGATGACAAAGAAGTTGTG+AGG - Chr4:86899480-86899499 MsG0480023558.01.T01:CDS 40.0%
GTTCAACGGGATATTAGGTT+GGG - Chr4:86899572-86899591 MsG0480023558.01.T01:CDS 40.0%
GTTGCGACTCTATTGTGAAA+GGG - Chr4:86900352-86900371 MsG0480023558.01.T01:intron 40.0%
TAGTGATATATCAGCTGCCA+TGG - Chr4:86899733-86899752 MsG0480023558.01.T01:intron 40.0%
TATGATGCACTAAAGAGGGT+TGG - Chr4:86901043-86901062 MsG0480023558.01.T01:CDS 40.0%
TATGTTATCCTATGATCCCC+TGG - Chr4:86901315-86901334 MsG0480023558.01.T01:CDS 40.0%
TTCAGAATGAAGATATGCCC+TGG + Chr4:86901098-86901117 None:intergenic 40.0%
! ACTATTTGTGATGCTGGTTG+TGG - Chr4:86899659-86899678 MsG0480023558.01.T01:CDS 40.0%
! CTGGCATCGAGTTTCAAATT+TGG + Chr4:86901421-86901440 None:intergenic 40.0%
!! GCTTGCAACTCATTTTGAAG+TGG - Chr4:86900060-86900079 MsG0480023558.01.T01:intron 40.0%
!! GGGAGTATTTCAACAACAAC+GGG - Chr4:86899501-86899520 MsG0480023558.01.T01:CDS 40.0%
!! GGTGTTACTATTTGTGATGC+TGG - Chr4:86899653-86899672 MsG0480023558.01.T01:CDS 40.0%
!! TGTTAAGAGTTTGTTGTGGG+TGG + Chr4:86899288-86899307 None:intergenic 40.0%
!!! CGGTTAGTTTTGTTTGGGTT+TGG + Chr4:86899236-86899255 None:intergenic 40.0%
!!! GCAACTCATTTTGAAGTGGA+AGG - Chr4:86900064-86900083 MsG0480023558.01.T01:intron 40.0%
!!! GCGAAACGGTTAGTTTTGTT+TGG + Chr4:86899242-86899261 None:intergenic 40.0%
AAAGATGAAGGGCCACTTCA+GGG - Chr4:86899632-86899651 MsG0480023558.01.T01:CDS 45.0%
ACCCTCAGAGTAAAGCAGAT+GGG - Chr4:86900951-86900970 MsG0480023558.01.T01:CDS 45.0%
ACGAGAATCAGGGAAAAGCA+TGG - Chr4:86899083-86899102 MsG0480023558.01.T01:three_prime_UTR 45.0%
AGGAACAGCCTCAATAAGCT+TGG + Chr4:86901200-86901219 None:intergenic 45.0%
AGGGAGAGAATGTAGCGAAA+CGG + Chr4:86899256-86899275 None:intergenic 45.0%
ATCCCATCTGCTTTACTCTG+AGG + Chr4:86900956-86900975 None:intergenic 45.0%
ATCCTCTGGACTCACTACAT+AGG + Chr4:86901220-86901239 None:intergenic 45.0%
GATTGCTCACCTTGCTTCTT+TGG - Chr4:86900976-86900995 MsG0480023558.01.T01:CDS 45.0%
GCCTTTCAGGATCAGAACTA+AGG + Chr4:86900671-86900690 None:intergenic 45.0%
GGGTGGACGATAAAGAAGAA+AGG - Chr4:86901148-86901167 MsG0480023558.01.T01:CDS 45.0%
GGTGTGTGTTCTGTCAACTA+AGG - Chr4:86900581-86900600 MsG0480023558.01.T01:intron 45.0%
TAAGGTTTCACCCTGGTCAT+GGG + Chr4:86900545-86900564 None:intergenic 45.0%
TACCCTCAGAGTAAAGCAGA+TGG - Chr4:86900950-86900969 MsG0480023558.01.T01:CDS 45.0%
TAGGCACGAATGGCATGTTA+GGG + Chr4:86900460-86900479 None:intergenic 45.0%
TCCCATCTGCTTTACTCTGA+GGG + Chr4:86900955-86900974 None:intergenic 45.0%
TGGTTCTCTTTCGATTCCGT+TGG - Chr4:86899685-86899704 MsG0480023558.01.T01:CDS 45.0%
TTCCTATGTAGTGAGTCCAG+AGG - Chr4:86901215-86901234 MsG0480023558.01.T01:CDS 45.0%
TTTCTCAGCTTCAGCAACCA+TGG + Chr4:86899753-86899772 None:intergenic 45.0%
! ACAACAACGGGTTTCAACGA+TGG - Chr4:86899513-86899532 MsG0480023558.01.T01:CDS 45.0%
! AGGTGACACTCCATTTTCAC+TGG + Chr4:86900846-86900865 None:intergenic 45.0%
! GCTTTTCTGCCAAAGAAGCA+AGG + Chr4:86900988-86901007 None:intergenic 45.0%
! GGATGATGAGAACGCCATTT+TGG + Chr4:86899192-86899211 None:intergenic 45.0%
! TGAGAGTGTGAGTGTGAGTT+GGG + Chr4:86899158-86899177 None:intergenic 45.0%
!! CCCTTAGTTCTGATCCTGAA+AGG - Chr4:86900667-86900686 MsG0480023558.01.T01:intron 45.0%
!! GGATGGATTGTACGATACAG+TGG - Chr4:86900904-86900923 MsG0480023558.01.T01:CDS 45.0%
!! TAAGAGTTTGTTGTGGGTGG+CGG + Chr4:86899285-86899304 None:intergenic 45.0%
!!! AGTGTTTTGGTAGGCACGAA+TGG + Chr4:86900470-86900489 None:intergenic 45.0%
AAGATATGCCCTGGTTGCCT+TGG + Chr4:86901089-86901108 None:intergenic 50.0%
ACAACAATCGCGGTCGTAAG+CGG - Chr4:86899374-86899393 MsG0480023558.01.T01:CDS 50.0%
ACCACAAACTTTGGCATCGC+AGG + Chr4:86900866-86900885 None:intergenic 50.0%
ACCTGCGATGCCAAAGTTTG+TGG - Chr4:86900862-86900881 MsG0480023558.01.T01:CDS 50.0%
ACTTCTCTCCCTTTCAGACC+CGG - Chr4:86899421-86899440 MsG0480023558.01.T01:CDS 50.0%
AGTGAGTCCAGAGGATTCAG+AGG - Chr4:86901224-86901243 MsG0480023558.01.T01:CDS 50.0%
CATAGACGGCACAACAATCG+CGG - Chr4:86899364-86899383 MsG0480023558.01.T01:CDS 50.0%
CTAAGGTTTCACCCTGGTCA+TGG + Chr4:86900546-86900565 None:intergenic 50.0%
GAAAGATGAAGGGCCACTTC+AGG - Chr4:86899631-86899650 MsG0480023558.01.T01:CDS 50.0%
GGTTGCTGAAGCTGAGAAAC+AGG - Chr4:86899754-86899773 MsG0480023558.01.T01:intron 50.0%
GTAGGCACGAATGGCATGTT+AGG + Chr4:86900461-86900480 None:intergenic 50.0%
GTCTGAAAGGGAGAGAAGTG+CGG + Chr4:86899420-86899439 None:intergenic 50.0%
TCGTCTTTCCGGGTCTGAAA+GGG + Chr4:86899432-86899451 None:intergenic 50.0%
TCTTTCGATTCCGTTGGCGA+AGG - Chr4:86899691-86899710 MsG0480023558.01.T01:CDS 50.0%
TGGCGTTCTCATCATCCATG+TGG - Chr4:86899195-86899214 MsG0480023558.01.T01:three_prime_UTR 50.0%
! GTGAGAGTGTGAGTGTGAGT+TGG + Chr4:86899159-86899178 None:intergenic 50.0%
! TGTGATGCTGGTTGTGGTAC+TGG - Chr4:86899665-86899684 MsG0480023558.01.T01:CDS 50.0%
!! AAGAGTTTGTTGTGGGTGGC+GGG + Chr4:86899284-86899303 None:intergenic 50.0%
!! TGGTCTCTAAGGTTTCACCC+TGG + Chr4:86900552-86900571 None:intergenic 50.0%
AAATACCCGGATCTTGCGCC+GGG + Chr4:86900701-86900720 None:intergenic 55.0%
AGGGTTGGAGAGTTGTTCCC+TGG - Chr4:86901058-86901077 MsG0480023558.01.T01:CDS 55.0%
CGCGATTGTTGTGCCGTCTA+TGG + Chr4:86899366-86899385 None:intergenic 55.0%
CTGTTGCGGTTGAGAGTGGA+GGG + Chr4:86899325-86899344 None:intergenic 55.0%
GAAATACCCGGATCTTGCGC+CGG + Chr4:86900702-86900721 None:intergenic 55.0%
GGGTTGGAGAGTTGTTCCCT+GGG - Chr4:86901059-86901078 MsG0480023558.01.T01:CDS 55.0%
GTCGTCTTTCCGGGTCTGAA+AGG + Chr4:86899433-86899452 None:intergenic 55.0%
TATGCCCTGGTTGCCTTGGA+AGG + Chr4:86901085-86901104 None:intergenic 55.0%
TCCTGAAAGGCGAAAGAGCC+CGG - Chr4:86900680-86900699 MsG0480023558.01.T01:intron 55.0%
TCGATTCCGTTGGCGAAGGA+AGG - Chr4:86899695-86899714 MsG0480023558.01.T01:CDS 55.0%
TGTTCGCGTCGTCGTCTTTC+CGG + Chr4:86899443-86899462 None:intergenic 55.0%
! AAAGGGAGAGAAGTGCGGTG+AGG + Chr4:86899415-86899434 None:intergenic 55.0%
!! AAAGGGCGTTGCGCAAGGTT+GGG - Chr4:86901128-86901147 MsG0480023558.01.T01:CDS 55.0%
!! TGTTGAAAGGGCGTTGCGCA+AGG - Chr4:86901123-86901142 MsG0480023558.01.T01:CDS 55.0%
AAAGAGCCCGGCGCAAGATC+CGG - Chr4:86900692-86900711 MsG0480023558.01.T01:intron 60.0%
AAGACGACGACGCGAACAGG+CGG - Chr4:86899445-86899464 MsG0480023558.01.T01:CDS 60.0%
ACAATCGCGGTCGTAAGCGG+TGG - Chr4:86899377-86899396 MsG0480023558.01.T01:CDS 60.0%
ACGGCACCTTCCTTCGCCAA+CGG + Chr4:86899704-86899723 None:intergenic 60.0%
GAACAGGCGGAGGAAGTAGG+CGG - Chr4:86899458-86899477 MsG0480023558.01.T01:CDS 60.0%
GACGTTACCGGCGCCATAGA+CGG - Chr4:86899350-86899369 MsG0480023558.01.T01:CDS 60.0%
GAGTGGAGGGATGGCGAATG+TGG + Chr4:86899312-86899331 None:intergenic 60.0%
GCTGTTGCGGTTGAGAGTGG+AGG + Chr4:86899326-86899345 None:intergenic 60.0%
GGAAAGACGACGACGCGAAC+AGG - Chr4:86899442-86899461 MsG0480023558.01.T01:CDS 60.0%
GTTCGCGTCGTCGTCTTTCC+GGG + Chr4:86899442-86899461 None:intergenic 60.0%
GTTGTTCCCTGGGCCTTCCA+AGG - Chr4:86901069-86901088 MsG0480023558.01.T01:CDS 60.0%
TGCGGTTGAGAGTGGAGGGA+TGG + Chr4:86899321-86899340 None:intergenic 60.0%
TGGGCCTTCCAAGGCAACCA+GGG - Chr4:86901078-86901097 MsG0480023558.01.T01:CDS 60.0%
TGGTTGCCTTGGAAGGCCCA+GGG + Chr4:86901078-86901097 None:intergenic 60.0%
TGTTGTGCCGTCTATGGCGC+CGG + Chr4:86899360-86899379 None:intergenic 60.0%
!! GAAAGGGCGTTGCGCAAGGT+TGG - Chr4:86901127-86901146 MsG0480023558.01.T01:CDS 60.0%
!! GTCTATGGCGCCGGTAACGT+CGG + Chr4:86899351-86899370 None:intergenic 60.0%
!! TTTGTTGTGGGTGGCGGGAG+AGG + Chr4:86899279-86899298 None:intergenic 60.0%
AAGAGCCCGGCGCAAGATCC+GGG - Chr4:86900693-86900712 MsG0480023558.01.T01:intron 65.0%
CGCGAACAGGCGGAGGAAGT+AGG - Chr4:86899455-86899474 MsG0480023558.01.T01:CDS 65.0%
CTGGGCCTTCCAAGGCAACC+AGG - Chr4:86901077-86901096 MsG0480023558.01.T01:CDS 65.0%
CTGGTTGCCTTGGAAGGCCC+AGG + Chr4:86901079-86901098 None:intergenic 65.0%
GCAACAGCCGCCGACGTTAC+CGG - Chr4:86899338-86899357 MsG0480023558.01.T01:CDS 65.0%
GCCGGGCTCTTTCGCCTTTC+AGG + Chr4:86900684-86900703 None:intergenic 65.0%
GCGGCTGTTGCGGTTGAGAG+TGG + Chr4:86899329-86899348 None:intergenic 65.0%
GGTAACGTCGGCGGCTGTTG+CGG + Chr4:86899339-86899358 None:intergenic 65.0%
GTAAGCGGTGGCTTCGTCGC+TGG - Chr4:86899389-86899408 MsG0480023558.01.T01:CDS 65.0%
!! TATGGCGCCGGTAACGTCGG+CGG + Chr4:86899348-86899367 None:intergenic 65.0%
!! TTGTGGGTGGCGGGAGAGGA+GGG + Chr4:86899275-86899294 None:intergenic 65.0%
ACGACGACGCGAACAGGCGG+AGG - Chr4:86899448-86899467 MsG0480023558.01.T01:CDS 70.0%
! GGGCGTTGCGCAAGGTTGGG+TGG - Chr4:86901131-86901150 MsG0480023558.01.T01:CDS 70.0%
!! GTTGTGGGTGGCGGGAGAGG+AGG + Chr4:86899276-86899295 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 86899083 86901480 86899083 ID=MsG0480023558.01;Name=MsG0480023558.01
Chr4 mRNA 86899083 86901480 86899083 ID=MsG0480023558.01.T01;Parent=MsG0480023558.01;Name=MsG0480023558.01.T01;_AED=0.22;_eAED=0.22;_QI=30|1|1|1|1|1|2|255|354
Chr4 exon 86899083 86899739 86899083 ID=MsG0480023558.01.T01:exon:1746;Parent=MsG0480023558.01.T01
Chr4 exon 86900788 86901480 86900788 ID=MsG0480023558.01.T01:exon:1745;Parent=MsG0480023558.01.T01
Chr4 five_prime_UTR 86901451 86901480 86901451 ID=MsG0480023558.01.T01:five_prime_utr;Parent=MsG0480023558.01.T01
Chr4 CDS 86900788 86901450 86900788 ID=MsG0480023558.01.T01:cds;Parent=MsG0480023558.01.T01
Chr4 CDS 86899338 86899739 86899338 ID=MsG0480023558.01.T01:cds;Parent=MsG0480023558.01.T01
Chr4 three_prime_UTR 86899083 86899337 86899083 ID=MsG0480023558.01.T01:three_prime_utr;Parent=MsG0480023558.01.T01
Gene Sequence

>MsG0480023558.01.T01

ATGCTATCTTATCTTTCCTGGATAACAATATCATCACTTCAACCCAACTCACACTCACACTCTCACTCAAATCAAACCAAAATGGCGTTCTCATCATCCATGTGGTCTTCTCTCTTTGTTCCAAACCCAAACAAAACTAACCGTTTCGCTACATTCTCTCCCTCCTCTCCCGCCACCCACAACAAACTCTTAACAACCACATTCGCCATCCCTCCACTCTCAACCGCAACAGCCGCCGACGTTACCGGCGCCATAGACGGCACAACAATCGCGGTCGTAAGCGGTGGCTTCGTCGCTGGCCTCACCGCACTTCTCTCCCTTTCAGACCCGGAAAGACGACGACGCGAACAGGCGGAGGAAGTAGGCGGTGATGACAAAGAAGTTGTGAGGGAGTATTTCAACAACAACGGGTTTCAACGATGGAAGAAGATTTACGGTGATACTGATGATGTTAATAGAGTTCAACGGGATATTAGGTTGGGACATTCCAAGACTGTTGAGAATGCTTTACAGATGTTGAAAGATGAAGGGCCACTTCAGGGTGTTACTATTTGTGATGCTGGTTGTGGTACTGGTTCTCTTTCGATTCCGTTGGCGAAGGAAGGTGCCGTTGTTTGTGCTAGTGATATATCAGCTGCCATGGTTGCTGAAGCTGAGAAACAGGCAAAAGAACAACTTGTGTCCAGTGAAAATGGAGTGTCACCTGCGATGCCAAAGTTTGTGGTGAGTGATTTAGAGAGTTTGGATGGATTGTACGATACAGTGGTGTGCCTCGATGTTATGATTCATTACCCTCAGAGTAAAGCAGATGGGATGATTGCTCACCTTGCTTCTTTGGCAGAAAAGCGATTGATTCTGAGCTTTGCACCTAAGACATTTTATTATGATGCACTAAAGAGGGTTGGAGAGTTGTTCCCTGGGCCTTCCAAGGCAACCAGGGCATATCTTCATTCTGAAGCAGATGTTGAAAGGGCGTTGCGCAAGGTTGGGTGGACGATAAAGAAGAAAGGCTTAATCGCTACTCAATTTTACTTTGCCAAGCTTATTGAGGCTGTTCCTATGTAG

Protein sequence

>MsG0480023558.01.T01

MLSYLSWITISSLQPNSHSHSHSNQTKMAFSSSMWSSLFVPNPNKTNRFATFSPSSPATHNKLLTTTFAIPPLSTATAADVTGAIDGTTIAVVSGGFVAGLTALLSLSDPERRRREQAEEVGGDDKEVVREYFNNNGFQRWKKIYGDTDDVNRVQRDIRLGHSKTVENALQMLKDEGPLQGVTICDAGCGTGSLSIPLAKEGAVVCASDISAAMVAEAEKQAKEQLVSSENGVSPAMPKFVVSDLESLDGLYDTVVCLDVMIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDALKRVGELFPGPSKATRAYLHSEADVERALRKVGWTIKKKGLIATQFYFAKLIEAVPM*