AlfalfaGEDB | MsG0580027094.01

M. sativa cultivar ZhongmuNo.1 / MsG0580027094.01

KEGG: -
GO: -
PFAM: PF02374

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027094.01.T01	AFK38663.1	84.596	396	12	2	1	347	2	397	0	643

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027094.01.T01	Q6DYE4	49.37	397	140	4	9	347	19	412	1.05E-125	371

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027094.01.T01	I3SEH1	84.596	396	12	2	1	347	2	397	0.0	643

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047945.01	MsG0580027094.01	0.801794	7.610483e-49	3.667355e-46
MsG0080047955.01	MsG0580027094.01	0.805527	1.278475e-49	6.779228e-47
MsG0080047956.01	MsG0580027094.01	0.822548	2.233053e-53	1.875075e-50
MsG0080047989.01	MsG0580027094.01	0.811089	8.334062e-51	5.111675e-48
MsG0080048059.01	MsG0580027094.01	0.838790	2.332901e-57	3.158391e-54
MsG0080048528.01	MsG0580027094.01	0.855932	4.525720e-62	1.062235e-58
MsG0080048776.01	MsG0580027094.01	0.871909	4.771649e-67	1.957481e-63
MsG0080048777.01	MsG0580027094.01	0.809769	1.606251e-50	9.514675e-48
MsG0080048780.01	MsG0580027094.01	0.806195	9.254011e-50	4.991967e-47
MsG0080048801.01	MsG0580027094.01	0.806118	9.607312e-50	5.172303e-47

Showing 1 to 10 of 704 entries

Previous1 2 3 4 5…71Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027094.01.T01	MTR_5g053280	84.848	396	11	2	1	347	2	397	0.0	623

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027094.01.T01	AT1G26090	49.370	397	140	4	9	347	19	412	1.07e-126	371

Showing 1 to 1 of 1 entries

Previous1Next

Find 108 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTGTTCCAATCTAT+TGG	0.268032	5:+53014999	None:intergenic
AAACTCTGTTCCAATCTATT+GGG	0.422618	5:+53015000	None:intergenic
AAATTTCTGTGGATTTGAGA+AGG	0.582017	5:+53015229	None:intergenic
AACCTGGAACTTCCTGGTCT+AGG	0.465022	5:-53013499	None:intergenic
AACTGATGATGTCATGTTAC+TGG	0.311491	5:+53014920	None:intergenic
AAGAAGAAGACACTGCCAAA+AGG	0.495604	5:+53016638	None:intergenic
AAGATTAGCTTTGGATTGGA+TGG	0.430982	5:-53016722	MsG0580027094.01.T01:exon
AATATGACTCAAGGCACACT+TGG	0.591609	5:-53016014	MsG0580027094.01.T01:CDS
AATGCAGAATTGACAGAGGT+TGG	0.475547	5:+53015176	None:intergenic
AATTCTGCATTACGTTATTG+GGG	0.532431	5:-53015164	MsG0580027094.01.T01:CDS

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGACCTACAGACTTAA+AGG	+	Chr5:53016566-53016585	None:intergenic	30.0%
AAAACTCTGTTCCAATCTAT+TGG	+	Chr5:53015288-53015307	None:intergenic	30.0%
AAAAGACCTACAGACTTAAA+GGG	+	Chr5:53016565-53016584	None:intergenic	30.0%
AAACTCTGTTCCAATCTATT+GGG	+	Chr5:53015287-53015306	None:intergenic	30.0%
AAATTTCTGTGGATTTGAGA+AGG	+	Chr5:53015058-53015077	None:intergenic	30.0%
AATTCTGCATTACGTTATTG+GGG	-	Chr5:53015120-53015139	MsG0580027094.01.T01:CDS	30.0%
ACACAAGGTGATATATATAG+AGG	+	Chr5:53014149-53014168	None:intergenic	30.0%
AGGGATTGTACACTAAATTA+GGG	+	Chr5:53016117-53016136	None:intergenic	30.0%
ATATATATAGAGGGAGGAAA+TGG	+	Chr5:53014139-53014158	None:intergenic	30.0%
ATGGGACTGTTATAAATAGT+AGG	-	Chr5:53015893-53015912	MsG0580027094.01.T01:intron	30.0%

Showing 1 to 10 of 306 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	53013500	53016806	53013500	ID=MsG0580027094.01;Name=MsG0580027094.01
Chr5	mRNA	53013500	53016806	53013500	ID=MsG0580027094.01.T01;Parent=MsG0580027094.01;Name=MsG0580027094.01.T01;_AED=0.39;_eAED=0.45;_QI=81\|0.6\|0.66\|1\|1\|1\|6\|129\|348
Chr5	exon	53013500	53013630	53013500	ID=MsG0580027094.01.T01:exon:17431;Parent=MsG0580027094.01.T01
Chr5	exon	53014841	53015264	53014841	ID=MsG0580027094.01.T01:exon:17430;Parent=MsG0580027094.01.T01
Chr5	exon	53015420	53015591	53015420	ID=MsG0580027094.01.T01:exon:17429;Parent=MsG0580027094.01.T01
Chr5	exon	53015672	53015862	53015672	ID=MsG0580027094.01.T01:exon:17428;Parent=MsG0580027094.01.T01
Chr5	exon	53016010	53016084	53016010	ID=MsG0580027094.01.T01:exon:17427;Parent=MsG0580027094.01.T01
Chr5	exon	53016543	53016806	53016543	ID=MsG0580027094.01.T01:exon:17426;Parent=MsG0580027094.01.T01
Chr5	five_prime_UTR	53016726	53016806	53016726	ID=MsG0580027094.01.T01:five_prime_utr;Parent=MsG0580027094.01.T01
Chr5	CDS	53016543	53016725	53016543	ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5	CDS	53016010	53016084	53016010	ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5	CDS	53015672	53015862	53015672	ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5	CDS	53015420	53015591	53015420	ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5	CDS	53014841	53015264	53014841	ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5	CDS	53013629	53013630	53013629	ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5	three_prime_UTR	53013500	53013628	53013500	ID=MsG0580027094.01.T01:three_prime_utr;Parent=MsG0580027094.01.T01

Gene Sequence

>MsG0580027094.01.T01

ATGGGTTCAATTTCGAGCTTCACATTTCCGGTTCTTTGTCGTTCAACTTCTGTTCGAACTAAACCCCTTTTGGCAGTGTCTTCTTCTTCTTCTTCTTCCGAGGATGTTGCTTCAACTAAATTACTCACTTTTCTCGGCAAAGGTGGCTCTGGCAAAACTACCGCCGCTATCTTCGCCGCTCAGATGCTTCTTGAACCCCTAAAACTTCTGAAGCAAGCAGATGCCCAGCTTAATATGACTCAAGGCACACTTGGAGGGATTGTGGGAGAGGAGCTTGGCATCCTTCCTGGAATGGACTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGGGATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATACGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTGTATTTAAAATATATCCGCACATTGGCTGAGAAAACTGAAATTGGTAGATTGGCTGCTCCTTCACTCCTGAGACTTGTGGATGAAGCCATGAAAATAAATAGCAGCAGATCTTATTTCAATGGGAGGATGAGTTCAGAAACATGGGACACTTTGGATCAAATTCTGGAGAAAGGATCTTCTGCCTTCTCAAATCCACAGAAATTTGGTTGCCTCCTTGCGATGGATCCTAACAATCCAACCTCTGTCAATTCTGCATTACGTTATTGGGGGTGTGCAATTCAGGCTGGTGCTCAAGTTTCAGGCGCTTTTGGAATTTCCTCTCAGCAACCAAAACCAGAATCATACGAAAGAACAAAGAAAGATCTTTCTCCCTTGCCTTCTGCTTTCATCTCAAGTCCGTTAGTAAATAGCCCAATAGATTGGAACAGAGTTTTACTGGACACTGTGAATAAAGATGCTAGGCAATTTCTTACTTCACTGTCAAGCCAATCCAGTAACATGACATCATCAGTTAAATTTGATGTCATAAGAAAATCGGTTACTCTCTTCATGCCAGGTTTTGACAAATCAGAGATTAAGCTATATCAAGTATAG

Protein sequence

>MsG0580027094.01.T01

MGSISSFTFPVLCRSTSVRTKPLLAVSSSSSSSEDVASTKLLTFLGKGGSGKTTAAIFAAQMLLEPLKLLKQADAQLNMTQGTLGGIVGEELGILPGMDSIFSVLALERLVGFLGMGSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARLYLKYIRTLAEKTEIGRLAAPSLLRLVDEAMKINSSRSYFNGRMSSETWDTLDQILEKGSSAFSNPQKFGCLLAMDPNNPTSVNSALRYWGCAIQAGAQVSGAFGISSQQPKPESYERTKKDLSPLPSAFISSPLVNSPIDWNRVLLDTVNKDARQFLTSLSSQSSNMTSSVKFDVIRKSVTLFMPGFDKSEIKLYQV*