AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027094.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027094.01.T01 MTR_5g053280 84.848 396 11 2 1 347 2 397 0.0 623
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027094.01.T01 AT1G26090 49.370 397 140 4 9 347 19 412 1.07e-126 371

Find 108 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCTGGTGCTCAAGTTTC+AGG 0.171579 5:-53015131 MsG0580027094.01.T01:CDS
CAATTCTGCATTACGTTATT+GGG 0.192768 5:-53015165 MsG0580027094.01.T01:CDS
TTTGTTCTTTCGTATGATTC+TGG 0.205531 5:+53015077 None:intergenic
TTCTCAAATCCACAGAAATT+TGG 0.216274 5:-53015227 MsG0580027094.01.T01:CDS
TCAATTCTGCATTACGTTAT+TGG 0.222888 5:-53015166 MsG0580027094.01.T01:CDS
GCTCAAGTTTCAGGCGCTTT+TGG 0.247175 5:-53015122 MsG0580027094.01.T01:CDS
CTTTCGTATGATTCTGGTTT+TGG 0.255201 5:+53015083 None:intergenic
TTGACAGAGGTTGGATTGTT+AGG 0.266572 5:+53015185 None:intergenic
AAAACTCTGTTCCAATCTAT+TGG 0.268032 5:+53014999 None:intergenic
GAGGAGCTTGGCATCCTTCC+TGG 0.301290 5:-53015831 MsG0580027094.01.T01:CDS
AACTGATGATGTCATGTTAC+TGG 0.311491 5:+53014920 None:intergenic
GGACACTTTGGATCAAATTC+TGG 0.320988 5:-53015422 MsG0580027094.01.T01:CDS
CTTGCACTTGAGAGGCTTGT+AGG 0.332180 5:-53015786 MsG0580027094.01.T01:CDS
TTGGCTGAGAAAACTGAAAT+TGG 0.346531 5:-53015544 MsG0580027094.01.T01:CDS
TGTTCGAACTAAACCCCTTT+TGG 0.351193 5:-53016653 MsG0580027094.01.T01:CDS
GGCTCAAACCTGGAACTTCC+TGG 0.369858 5:-53013505 MsG0580027094.01.T01:three_prime_UTR
AATTTCGAGCTTCACATTTC+CGG 0.370043 5:-53016695 MsG0580027094.01.T01:CDS
ATTTGATGTCATAAGAAAAT+CGG 0.374741 5:-53014895 MsG0580027094.01.T01:CDS
GAGGCGTTTAAGATTAGCTT+TGG 0.376524 5:-53016731 MsG0580027094.01.T01:five_prime_UTR
GAAAAGATTGAGTCCATTCC+AGG 0.377962 5:+53015813 None:intergenic
GCCCTAGACCAGGAAGTTCC+AGG 0.390471 5:+53013497 MsG0580027095.01.T01:intron
AGCAGCAGATCTTATTTCAA+TGG 0.400613 5:-53015466 MsG0580027094.01.T01:CDS
GCCTTAGCGGGGCTCAAACC+TGG 0.402877 5:-53013515 MsG0580027094.01.T01:three_prime_UTR
CTCCCACCAAGGGCCTTAGC+GGG 0.421294 5:-53013527 MsG0580027094.01.T01:three_prime_UTR
AAACTCTGTTCCAATCTATT+GGG 0.422618 5:+53015000 None:intergenic
CCTCCCACCAAGGGCCTTAG+CGG 0.429239 5:-53013528 MsG0580027094.01.T01:three_prime_UTR
AAGATTAGCTTTGGATTGGA+TGG 0.430982 5:-53016722 MsG0580027094.01.T01:exon
TTTCTCGGCAAAGGTGGCTC+TGG 0.432097 5:-53016574 MsG0580027094.01.T01:CDS
TAATTTAGAGTGGGAGAGAA+TGG 0.432520 5:-53013616 MsG0580027094.01.T01:intron
GGTCTTCTCAACCTTGGAAC+GGG 0.435212 5:+53013590 MsG0580027095.01.T01:intron
GAAAACTGAAATTGGTAGAT+TGG 0.441363 5:-53015536 MsG0580027094.01.T01:CDS
TTGAGCCCCGCTAAGGCCCT+TGG 0.443754 5:+53013521 MsG0580027095.01.T01:intron
CGAGGAAACCTTGAGAATCA+TGG 0.447952 5:-53015691 MsG0580027094.01.T01:CDS
TGCCTTGAGTCATATTAAGC+TGG 0.456940 5:+53016021 None:intergenic
CGCCGCTATCTTCGCCGCTC+AGG 0.461114 5:-53016542 MsG0580027094.01.T01:intron
ACCTGGAACTTCCTGGTCTA+GGG 0.461598 5:-53013498 None:intergenic
TTGCACTTGAGAGGCTTGTA+GGG 0.463616 5:-53015785 MsG0580027094.01.T01:CDS
AACCTGGAACTTCCTGGTCT+AGG 0.465022 5:-53013499 None:intergenic
TTCAGAAACATGGGACACTT+TGG 0.465064 5:-53015434 MsG0580027094.01.T01:CDS
AGAAGAAGACACTGCCAAAA+GGG 0.468798 5:+53016639 None:intergenic
GCAGCAGATCTTATTTCAAT+GGG 0.474876 5:-53015465 MsG0580027094.01.T01:CDS
AATGCAGAATTGACAGAGGT+TGG 0.475547 5:+53015176 None:intergenic
TCGGTTACTCTCTTCATGCC+AGG 0.479429 5:-53014876 MsG0580027094.01.T01:CDS
TGGCTTCATCCACAAGTCTC+AGG 0.482093 5:+53015500 None:intergenic
GAAGTTGAACGACAAAGAAC+CGG 0.483634 5:+53016676 None:intergenic
TAGTAAATAGCCCAATAGAT+TGG 0.489863 5:-53015010 MsG0580027094.01.T01:CDS
CCAAGGTTGAGAAGACCTTA+AGG 0.493945 5:-53013584 MsG0580027094.01.T01:three_prime_UTR
AAGAAGAAGACACTGCCAAA+AGG 0.495604 5:+53016638 None:intergenic
ATCTCTGATTTGTCAAAACC+TGG 0.497549 5:+53014858 None:intergenic
GTTTAAGATTAGCTTTGGAT+TGG 0.499217 5:-53016726 MsG0580027094.01.T01:five_prime_UTR
CATATAATAGATTGTGGGAG+AGG 0.504284 5:-53015850 MsG0580027094.01.T01:intron
AGCCCCGCTAAGGCCCTTGG+TGG 0.510003 5:+53013524 MsG0580027095.01.T01:intron
GCTTGGCATCCTTCCTGGAA+TGG 0.510438 5:-53015826 MsG0580027094.01.T01:CDS
TAAGTGCTCTTTGAGCCTTA+AGG 0.510644 5:+53013569 MsG0580027095.01.T01:intron
TGAGATGAAAGCAGAAGGCA+AGG 0.520256 5:+53015040 None:intergenic
TCCAGGTTTGAGCCCCGCTA+AGG 0.520463 5:+53013514 MsG0580027095.01.T01:intron
AGATTAGCTTTGGATTGGAT+GGG 0.521247 5:-53016721 MsG0580027094.01.T01:exon
TGTGCCATATAATAGATTGT+GGG 0.522182 5:-53015855 MsG0580027094.01.T01:intron
ATGACTCAAGGCACACTTGG+AGG 0.523642 5:-53016011 MsG0580027094.01.T01:CDS
ATTTGGTTGCCTCCTTGCGA+TGG 0.523836 5:-53015210 MsG0580027094.01.T01:CDS
TCCTTCACTCCTGAGACTTG+TGG 0.529663 5:-53015509 MsG0580027094.01.T01:CDS
AATTCTGCATTACGTTATTG+GGG 0.532431 5:-53015164 MsG0580027094.01.T01:CDS
CCTTAAGGTCTTCTCAACCT+TGG 0.534351 5:+53013584 MsG0580027095.01.T01:intron
ATGATGTCATGTTACTGGAT+TGG 0.534727 5:+53014925 None:intergenic
TAGATTGTGGGAGAGGAGCT+TGG 0.544408 5:-53015843 MsG0580027094.01.T01:CDS
TTTCGGTACTTGCACTTGAG+AGG 0.545250 5:-53015794 MsG0580027094.01.T01:CDS
TTTAGTTGAAGCAACATCCT+CGG 0.550886 5:+53016606 None:intergenic
CCGCTAAGGCCCTTGGTGGG+AGG 0.559935 5:+53013528 MsG0580027095.01.T01:intron
AGGTCTTCTCAACCTTGGAA+CGG 0.561721 5:+53013589 MsG0580027095.01.T01:intron
TCTATTGGGCTATTTACTAA+CGG 0.562951 5:+53015014 None:intergenic
TGACTCAAGGCACACTTGGA+GGG 0.565824 5:-53016010 MsG0580027094.01.T01:CDS
GAGGAAACCTTGAGAATCAT+GGG 0.567213 5:-53015690 MsG0580027094.01.T01:CDS
GCCTTGAGTCATATTAAGCT+GGG 0.571410 5:+53016022 None:intergenic
GGAGGATGAGTTCAGAAACA+TGG 0.573634 5:-53015444 MsG0580027094.01.T01:CDS
TCCACAAGTCTCAGGAGTGA+AGG 0.574370 5:+53015508 None:intergenic
GCTTCCACCCATGATTCTCA+AGG 0.576164 5:+53015683 None:intergenic
GACTCAAGGCACACTTGGAG+GGG 0.579696 5:-53016009 MsG0580027094.01.T01:intron
GAGAATGGTGACCCGTTCCA+AGG 0.580345 5:-53013601 MsG0580027094.01.T01:three_prime_UTR
AAATTTCTGTGGATTTGAGA+AGG 0.582017 5:+53015229 None:intergenic
TCCCACCAAGGGCCTTAGCG+GGG 0.589697 5:-53013526 MsG0580027094.01.T01:three_prime_UTR
AATATGACTCAAGGCACACT+TGG 0.591609 5:-53016014 MsG0580027094.01.T01:CDS
TTTAAAATATATCCGCACAT+TGG 0.592995 5:-53015563 MsG0580027094.01.T01:CDS
ACACTGTGAATAAAGATGCT+AGG 0.598622 5:-53014971 MsG0580027094.01.T01:CDS
GCCCCGCTAAGGCCCTTGGT+GGG 0.599144 5:+53013525 MsG0580027095.01.T01:intron
AGGAGGCAACCAAATTTCTG+TGG 0.605058 5:+53015218 None:intergenic
GCCCAGCTTAATATGACTCA+AGG 0.605769 5:-53016023 MsG0580027094.01.T01:CDS
CACTTTGGATCAAATTCTGG+AGG 0.608227 5:-53015419 MsG0580027094.01.T01:intron
ATTCTGCATTACGTTATTGG+GGG 0.613562 5:-53015163 MsG0580027094.01.T01:CDS
GCAGATCTTATTTCAATGGG+AGG 0.614942 5:-53015462 MsG0580027094.01.T01:CDS
GATTGTTAGGATCCATCGCA+AGG 0.618634 5:+53015198 None:intergenic
GAAGAAGACACTGCCAAAAG+GGG 0.622389 5:+53016640 None:intergenic
TTTACATTTACCTCCCACCA+AGG 0.630217 5:-53013538 MsG0580027094.01.T01:three_prime_UTR
TTACATTTACCTCCCACCAA+GGG 0.636029 5:-53013537 MsG0580027094.01.T01:three_prime_UTR
GGACTTGAGATGAAAGCAGA+AGG 0.643751 5:+53015035 None:intergenic
GAGGATGAGTTCAGAAACAT+GGG 0.643942 5:-53015443 MsG0580027094.01.T01:CDS
GAGATGAAAGCAGAAGGCAA+GGG 0.655584 5:+53015041 None:intergenic
TGGGTGGAAGCAGTAAAGCA+AGG 0.674055 5:-53015671 MsG0580027094.01.T01:intron
TACCTGAGCGGCGAAGATAG+CGG 0.683068 5:+53016540 None:intergenic
AGATTGAGTCCATTCCAGGA+AGG 0.684195 5:+53015817 None:intergenic
GGCTCAAAGAGCACTTACGA+AGG 0.685967 5:-53013563 MsG0580027094.01.T01:three_prime_UTR
GAAACCTTGAGAATCATGGG+TGG 0.699723 5:-53015687 MsG0580027094.01.T01:CDS
TTTGACGTAATAATATACGA+TGG 0.709980 5:-53015723 MsG0580027094.01.T01:CDS
ACGTAATGCAGAATTGACAG+AGG 0.717466 5:+53015172 None:intergenic
TGAATTGAATTGATGCAGTG+AGG 0.733196 5:-53016750 MsG0580027094.01.T01:five_prime_UTR
TGTTAGGATCCATCGCAAGG+AGG 0.734293 5:+53015201 None:intergenic
CTGAGCGGCGAAGATAGCGG+CGG 0.747778 5:+53016543 None:intergenic
TAAAGTTGTACGTACCTGAG+CGG 0.748110 5:+53016528 None:intergenic
ATACGATGGTGTCAGCAGCG+AGG 0.764567 5:-53015709 MsG0580027094.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTCTTTTGTTTTTAT+GGG + Chr5:53015613-53015632 None:intergenic 10.0%
!!! ATTTTGTTTACAAAATAAAA+TGG - Chr5:53015665-53015684 MsG0580027094.01.T01:intron 10.0%
!!! TAATATTTCTTTTGTTTTTA+TGG + Chr5:53015614-53015633 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGTAGTT+TGG - Chr5:53016590-53016609 MsG0580027094.01.T01:CDS 10.0%
!! AAACAAAAGAAATATTACTA+AGG - Chr5:53015617-53015636 MsG0580027094.01.T01:intron 15.0%
!! TTTCTATCTATATTTATGAT+GGG - Chr5:53014327-53014346 MsG0580027094.01.T01:intron 15.0%
!!! TTTTCATCAAATTTTTATCA+AGG - Chr5:53014359-53014378 MsG0580027094.01.T01:intron 15.0%
!!! TTTTCTATCTATATTTATGA+TGG - Chr5:53014326-53014345 MsG0580027094.01.T01:intron 15.0%
!! AAATATAAAATGCATGAGAA+AGG + Chr5:53015479-53015498 None:intergenic 20.0%
!! AGATTCCCAAAATAAAAATA+TGG + Chr5:53016647-53016666 None:intergenic 20.0%
!! ATATTCTATGAGAAATAAGA+TGG - Chr5:53015543-53015562 MsG0580027094.01.T01:CDS 20.0%
!! ATTAGTTAGAAGAAGATTAT+GGG - Chr5:53015875-53015894 MsG0580027094.01.T01:intron 20.0%
!! ATTTGATGTCATAAGAAAAT+CGG - Chr5:53015389-53015408 MsG0580027094.01.T01:intron 20.0%
!!! ATATGTTTTTGTAAAATTCC+TGG - Chr5:53015724-53015743 MsG0580027094.01.T01:CDS 20.0%
! AATAAGATGGTTCTTATCTT+TGG - Chr5:53015556-53015575 MsG0580027094.01.T01:CDS 25.0%
! AGTTAAGACATTTATTTACC+AGG + Chr5:53015745-53015764 None:intergenic 25.0%
! ATTGCATAATATATGCTAGA+TGG - Chr5:53013868-53013887 MsG0580027094.01.T01:intron 25.0%
! CTCCATACAGTATAATATTA+AGG + Chr5:53016617-53016636 None:intergenic 25.0%
! GACCTTAATATTATACTGTA+TGG - Chr5:53016612-53016631 MsG0580027094.01.T01:CDS 25.0%
! TAGAAATTCACGTGAATAAA+TGG + Chr5:53013912-53013931 None:intergenic 25.0%
! TTGCATAATATATGCTAGAT+GGG - Chr5:53013869-53013888 MsG0580027094.01.T01:intron 25.0%
! TTTGACGTAATAATATACGA+TGG - Chr5:53014561-53014580 MsG0580027094.01.T01:intron 25.0%
!! CTTTGGTTCAAATAAAATGA+TGG - Chr5:53015573-53015592 MsG0580027094.01.T01:intron 25.0%
!! GATTAGTTAGAAGAAGATTA+TGG - Chr5:53015874-53015893 MsG0580027094.01.T01:intron 25.0%
!! TTTAAAATATATCCGCACAT+TGG - Chr5:53014721-53014740 MsG0580027094.01.T01:intron 25.0%
!!! ACTAAATTACTCACTTTTCT+CGG - Chr5:53013695-53013714 MsG0580027094.01.T01:intron 25.0%
!!! GCACTCCATATTTTTATTTT+GGG - Chr5:53016639-53016658 MsG0580027094.01.T01:CDS 25.0%
!!! TGCACTCCATATTTTTATTT+TGG - Chr5:53016638-53016657 MsG0580027094.01.T01:CDS 25.0%
!!! TTAACTTGCAAAATAGATGT+TGG - Chr5:53015759-53015778 MsG0580027094.01.T01:CDS 25.0%
!!! TTCAATGATAGATTAGTCTT+GGG - Chr5:53013783-53013802 MsG0580027094.01.T01:intron 25.0%
AAAAAGACCTACAGACTTAA+AGG + Chr5:53016566-53016585 None:intergenic 30.0%
AAAACTCTGTTCCAATCTAT+TGG + Chr5:53015288-53015307 None:intergenic 30.0%
AAAAGACCTACAGACTTAAA+GGG + Chr5:53016565-53016584 None:intergenic 30.0%
AAACTCTGTTCCAATCTATT+GGG + Chr5:53015287-53015306 None:intergenic 30.0%
AAATTTCTGTGGATTTGAGA+AGG + Chr5:53015058-53015077 None:intergenic 30.0%
AATTCTGCATTACGTTATTG+GGG - Chr5:53015120-53015139 MsG0580027094.01.T01:CDS 30.0%
ACACAAGGTGATATATATAG+AGG + Chr5:53014149-53014168 None:intergenic 30.0%
AGGGATTGTACACTAAATTA+GGG + Chr5:53016117-53016136 None:intergenic 30.0%
ATATATATAGAGGGAGGAAA+TGG + Chr5:53014139-53014158 None:intergenic 30.0%
ATGGGACTGTTATAAATAGT+AGG - Chr5:53015893-53015912 MsG0580027094.01.T01:intron 30.0%
ATGTCTGATACATTAATTGG+AGG + Chr5:53013810-53013829 None:intergenic 30.0%
CAATTCTGCATTACGTTATT+GGG - Chr5:53015119-53015138 MsG0580027094.01.T01:CDS 30.0%
CACAAGGTGATATATATAGA+GGG + Chr5:53014148-53014167 None:intergenic 30.0%
CCAATGTCTGATACATTAAT+TGG + Chr5:53013813-53013832 None:intergenic 30.0%
CCAATTAATGTATCAGACAT+TGG - Chr5:53013810-53013829 MsG0580027094.01.T01:intron 30.0%
CCATGAAGAATATGGTAAAA+AGG + Chr5:53015510-53015529 None:intergenic 30.0%
GAAAACTGAAATTGGTAGAT+TGG - Chr5:53014748-53014767 MsG0580027094.01.T01:intron 30.0%
GACTGTTATAAATAGTAGGA+GGG - Chr5:53015897-53015916 MsG0580027094.01.T01:intron 30.0%
TAGTAAATAGCCCAATAGAT+TGG - Chr5:53015274-53015293 MsG0580027094.01.T01:intron 30.0%
TATAAAATGCATGAGAAAGG+AGG + Chr5:53015476-53015495 None:intergenic 30.0%
TATCTGCTCAATTGTAAGAT+TGG - Chr5:53014040-53014059 MsG0580027094.01.T01:intron 30.0%
TCAAACGAAAGAAAATGTCA+AGG + Chr5:53014679-53014698 None:intergenic 30.0%
TCAATTCTGCATTACGTTAT+TGG - Chr5:53015118-53015137 MsG0580027094.01.T01:CDS 30.0%
TCTATTATATGGCACAAAAG+AGG + Chr5:53014425-53014444 None:intergenic 30.0%
TCTATTGGGCTATTTACTAA+CGG + Chr5:53015273-53015292 None:intergenic 30.0%
TGCATAATATATGCTAGATG+GGG - Chr5:53013870-53013889 MsG0580027094.01.T01:intron 30.0%
TGTGCCATATAATAGATTGT+GGG - Chr5:53014429-53014448 MsG0580027094.01.T01:intron 30.0%
TTCTCAAATCCACAGAAATT+TGG - Chr5:53015057-53015076 MsG0580027094.01.T01:CDS 30.0%
TTGTGCCATATAATAGATTG+TGG - Chr5:53014428-53014447 MsG0580027094.01.T01:intron 30.0%
TTTATCAAGGTTTCAAACTG+CGG - Chr5:53014372-53014391 MsG0580027094.01.T01:intron 30.0%
TTTGTTCTTTCGTATGATTC+TGG + Chr5:53015210-53015229 None:intergenic 30.0%
! CCTTTTTACCATATTCTTCA+TGG - Chr5:53015507-53015526 MsG0580027094.01.T01:CDS 30.0%
! GGGAATCTTTAATTTAGAGT+GGG - Chr5:53016659-53016678 MsG0580027094.01.T01:CDS 30.0%
! GTTTGATACTTCGATTTTGT+AGG - Chr5:53014693-53014712 MsG0580027094.01.T01:intron 30.0%
! TGATTATGTGTTGTTCAGAA+AGG - Chr5:53015024-53015043 MsG0580027094.01.T01:CDS 30.0%
! TGGGAATCTTTAATTTAGAG+TGG - Chr5:53016658-53016677 MsG0580027094.01.T01:CDS 30.0%
! TTCAAGAGATCAGTATCTTT+TGG - Chr5:53016395-53016414 MsG0580027094.01.T01:intron 30.0%
!! GTTCAATGATAGATTAGTCT+TGG - Chr5:53013782-53013801 MsG0580027094.01.T01:intron 30.0%
!! GTTTAAGATTAGCTTTGGAT+TGG - Chr5:53013558-53013577 MsG0580027094.01.T01:three_prime_UTR 30.0%
!! TCTGCTGCTATTTATTTTCA+TGG + Chr5:53014807-53014826 None:intergenic 30.0%
!!! CCTTGTGTACATTTTGATTT+CGG - Chr5:53014161-53014180 MsG0580027094.01.T01:intron 30.0%
AAGGTGATATATATAGAGGG+AGG + Chr5:53014145-53014164 None:intergenic 35.0%
AATCACGAGAGAATATTTGG+AGG + Chr5:53016137-53016156 None:intergenic 35.0%
AATGAGTGCCATGAAGAATA+TGG + Chr5:53015518-53015537 None:intergenic 35.0%
AATTTCGAGCTTCACATTTC+CGG - Chr5:53013589-53013608 MsG0580027094.01.T01:three_prime_UTR 35.0%
ACACTGTGAATAAAGATGCT+AGG - Chr5:53015313-53015332 MsG0580027094.01.T01:intron 35.0%
ATCACGAGAGAATATTTGGA+GGG + Chr5:53016136-53016155 None:intergenic 35.0%
ATGATGTCATGTTACTGGAT+TGG + Chr5:53015362-53015381 None:intergenic 35.0%
ATTCTGCATTACGTTATTGG+GGG - Chr5:53015121-53015140 MsG0580027094.01.T01:CDS 35.0%
CATATAATAGATTGTGGGAG+AGG - Chr5:53014434-53014453 MsG0580027094.01.T01:intron 35.0%
CCGAAATCAAAATGTACACA+AGG + Chr5:53014164-53014183 None:intergenic 35.0%
CTCTCCCACAATCTATTATA+TGG + Chr5:53014436-53014455 None:intergenic 35.0%
CTTCTTCTAACTAATCTGCT+AGG + Chr5:53015870-53015889 None:intergenic 35.0%
GAGGGATTGTACACTAAATT+AGG + Chr5:53016118-53016137 None:intergenic 35.0%
GGACTGTTATAAATAGTAGG+AGG - Chr5:53015896-53015915 MsG0580027094.01.T01:intron 35.0%
GTATCAAGCCTAAAAGGAAA+AGG - Chr5:53016450-53016469 MsG0580027094.01.T01:intron 35.0%
TCCAAATATTCTCTCGTGAT+TGG - Chr5:53016136-53016155 MsG0580027094.01.T01:intron 35.0%
TCCATCCTTTCTCCATTTAT+AGG - Chr5:53016047-53016066 MsG0580027094.01.T01:CDS 35.0%
TGAATTGAATTGATGCAGTG+AGG - Chr5:53013534-53013553 MsG0580027094.01.T01:three_prime_UTR 35.0%
TTGGCTGAGAAAACTGAAAT+TGG - Chr5:53014740-53014759 MsG0580027094.01.T01:intron 35.0%
TTTAGTTGAAGCAACATCCT+CGG + Chr5:53013681-53013700 MsG0580027095.01.T01:intron 35.0%
! AACTGATGATGTCATGTTAC+TGG + Chr5:53015367-53015386 None:intergenic 35.0%
! AGATTGGAACAGAGTTTTAC+TGG - Chr5:53015290-53015309 MsG0580027094.01.T01:intron 35.0%
! AGCAGCAGATCTTATTTCAA+TGG - Chr5:53014818-53014837 MsG0580027094.01.T01:intron 35.0%
! ATCTCTGATTTGTCAAAACC+TGG + Chr5:53015429-53015448 None:intergenic 35.0%
! GATGTTTCAGCATTTTGCAA+TGG - Chr5:53013967-53013986 MsG0580027094.01.T01:intron 35.0%
! GCAGCAGATCTTATTTCAAT+GGG - Chr5:53014819-53014838 MsG0580027094.01.T01:intron 35.0%
! TAATTTAGAGTGGGAGAGAA+TGG - Chr5:53016668-53016687 MsG0580027094.01.T01:CDS 35.0%
! TATGTTTGGTACTGAAGGTT+TGG + Chr5:53016422-53016441 None:intergenic 35.0%
! TGCTTGCTTCAGAAGTTTTA+GGG + Chr5:53014238-53014257 None:intergenic 35.0%
! TTCCTTTTAGGCTTGATACT+CGG + Chr5:53016449-53016468 None:intergenic 35.0%
!! AAGATTAGCTTTGGATTGGA+TGG - Chr5:53013562-53013581 MsG0580027094.01.T01:three_prime_UTR 35.0%
!! AGATTAGCTTTGGATTGGAT+GGG - Chr5:53013563-53013582 MsG0580027094.01.T01:three_prime_UTR 35.0%
!! TGGAATGGACTCAATCTTTT+CGG - Chr5:53014473-53014492 MsG0580027094.01.T01:intron 35.0%
!! TTAGAGCACCTTTTCCTTTT+AGG + Chr5:53016461-53016480 None:intergenic 35.0%
!!! CTTTCGTATGATTCTGGTTT+TGG + Chr5:53015204-53015223 None:intergenic 35.0%
AAAGAGGAGTGGTGACTTAA+AGG + Chr5:53016299-53016318 None:intergenic 40.0%
AACGAGCTAAGGTAAACTCA+CGG + Chr5:53013839-53013858 None:intergenic 40.0%
AAGAAGAAGACACTGCCAAA+AGG + Chr5:53013649-53013668 MsG0580027095.01.T01:intron 40.0%
AAGAGGAGTGGTGACTTAAA+GGG + Chr5:53016298-53016317 None:intergenic 40.0%
AAGCTTTACACAAAGAGGAG+TGG + Chr5:53016310-53016329 None:intergenic 40.0%
AATATGACTCAAGGCACACT+TGG - Chr5:53014270-53014289 MsG0580027094.01.T01:intron 40.0%
AATGCAGAATTGACAGAGGT+TGG + Chr5:53015111-53015130 None:intergenic 40.0%
ACCGATCTTTATCACTGTGT+AGG + Chr5:53014964-53014983 None:intergenic 40.0%
ACGTAATGCAGAATTGACAG+AGG + Chr5:53015115-53015134 None:intergenic 40.0%
ACTCCTCTTTGTGTAAAGCT+TGG - Chr5:53016309-53016328 MsG0580027094.01.T01:intron 40.0%
AGAAGAAGACACTGCCAAAA+GGG + Chr5:53013648-53013667 MsG0580027095.01.T01:intron 40.0%
AGAATCGGAACGCCTATAAA+TGG + Chr5:53016062-53016081 None:intergenic 40.0%
AGACTGACCATGACAAATGT+TGG + Chr5:53016335-53016354 None:intergenic 40.0%
AGTCTCTAGTCTAGTGATTC+TGG - Chr5:53016350-53016369 MsG0580027094.01.T01:intron 40.0%
CACTTTGGATCAAATTCTGG+AGG - Chr5:53014865-53014884 MsG0580027094.01.T01:CDS 40.0%
CATATTGTTCAGTACTCAGC+CGG + Chr5:53016246-53016265 None:intergenic 40.0%
CCCTACACAGTGATAAAGAT+CGG - Chr5:53014960-53014979 MsG0580027094.01.T01:CDS 40.0%
CCGATCTTTATCACTGTGTA+GGG + Chr5:53014963-53014982 None:intergenic 40.0%
CGTGAATAAATGGAGTGTAC+AGG + Chr5:53013902-53013921 None:intergenic 40.0%
CTTCTAACTAATCTGCTAGG+TGG + Chr5:53015867-53015886 None:intergenic 40.0%
GAAAAGATTGAGTCCATTCC+AGG + Chr5:53014474-53014493 None:intergenic 40.0%
GAACGCCTATAAATGGAGAA+AGG + Chr5:53016055-53016074 None:intergenic 40.0%
GAAGTTGAACGACAAAGAAC+CGG + Chr5:53013611-53013630 MsG0580027095.01.T01:intron 40.0%
GAGGAAACCTTGAGAATCAT+GGG - Chr5:53014594-53014613 MsG0580027094.01.T01:intron 40.0%
GAGGATGAGTTCAGAAACAT+GGG - Chr5:53014841-53014860 MsG0580027094.01.T01:CDS 40.0%
GCCAATCACGAGAGAATATT+TGG + Chr5:53016140-53016159 None:intergenic 40.0%
GCCTATAAATGGAGAAAGGA+TGG + Chr5:53016051-53016070 None:intergenic 40.0%
GCCTTGAGTCATATTAAGCT+GGG + Chr5:53014265-53014284 None:intergenic 40.0%
GGACACTTTGGATCAAATTC+TGG - Chr5:53014862-53014881 MsG0580027094.01.T01:CDS 40.0%
TAAAGTTGTACGTACCTGAG+CGG + Chr5:53013759-53013778 None:intergenic 40.0%
TAAATAGTAGGAGGGAAGAG+AGG - Chr5:53015905-53015924 MsG0580027094.01.T01:intron 40.0%
TAAGTGCTCTTTGAGCCTTA+AGG + Chr5:53016718-53016737 None:intergenic 40.0%
TCTCGTGATTGGCAATGATT+AGG - Chr5:53016147-53016166 MsG0580027094.01.T01:intron 40.0%
TCTTTATCACTGTGTAGGGT+TGG + Chr5:53014959-53014978 None:intergenic 40.0%
TGATTGGCAATGATTAGGTC+AGG - Chr5:53016152-53016171 MsG0580027094.01.T01:intron 40.0%
TGCCTTGAGTCATATTAAGC+TGG + Chr5:53014266-53014285 None:intergenic 40.0%
TTACATTTACCTCCCACCAA+GGG - Chr5:53016747-53016766 MsG0580027094.01.T01:five_prime_UTR 40.0%
TTATAGGCGTTCCGATTCTA+GGG - Chr5:53016063-53016082 MsG0580027094.01.T01:CDS 40.0%
TTCAGAAACATGGGACACTT+TGG - Chr5:53014850-53014869 MsG0580027094.01.T01:CDS 40.0%
TTCTTCTTCTTCTTCTTCCG+AGG - Chr5:53013661-53013680 MsG0580027094.01.T01:intron 40.0%
TTGACAGAGGTTGGATTGTT+AGG + Chr5:53015102-53015121 None:intergenic 40.0%
TTTACATTTACCTCCCACCA+AGG - Chr5:53016746-53016765 MsG0580027094.01.T01:five_prime_UTR 40.0%
TTTATAGGCGTTCCGATTCT+AGG - Chr5:53016062-53016081 MsG0580027094.01.T01:CDS 40.0%
TTTCCAACCTAACAGCTGAA+AGG + Chr5:53014093-53014112 None:intergenic 40.0%
! CACGTGAATTTCTAGACATC+AGG - Chr5:53013918-53013937 MsG0580027094.01.T01:intron 40.0%
! CTGCTTGCTTCAGAAGTTTT+AGG + Chr5:53014239-53014258 None:intergenic 40.0%
! GAAGCAGTAAAGCAAGGTTT+TGG - Chr5:53014619-53014638 MsG0580027094.01.T01:intron 40.0%
! GCAGATCTTATTTCAATGGG+AGG - Chr5:53014822-53014841 MsG0580027094.01.T01:intron 40.0%
! GGTTGGCTACATAGATCAAA+TGG + Chr5:53014942-53014961 None:intergenic 40.0%
! TCCTTTTAGGCTTGATACTC+GGG + Chr5:53016448-53016467 None:intergenic 40.0%
! TGTTCGAACTAAACCCCTTT+TGG - Chr5:53013631-53013650 MsG0580027094.01.T01:intron 40.0%
! TTTCAGCATTTTGCAATGGC+TGG - Chr5:53013971-53013990 MsG0580027094.01.T01:intron 40.0%
!! AAAGGAAAAGGTGCTCTAAC+TGG - Chr5:53016462-53016481 MsG0580027094.01.T01:intron 40.0%
!! GAGGCGTTTAAGATTAGCTT+TGG - Chr5:53013553-53013572 MsG0580027094.01.T01:three_prime_UTR 40.0%
!! GCTGAGTACTGAACAATATG+GGG - Chr5:53016246-53016265 MsG0580027094.01.T01:intron 40.0%
!! GCTTGCTTCAGAAGTTTTAG+GGG + Chr5:53014237-53014256 None:intergenic 40.0%
!! GGCTGAGTACTGAACAATAT+GGG - Chr5:53016245-53016264 MsG0580027094.01.T01:intron 40.0%
!! TTACTCACTTTTCTCGGCAA+AGG - Chr5:53013701-53013720 MsG0580027094.01.T01:intron 40.0%
AACCTTTGGTACCCAATAGC+AGG - Chr5:53016492-53016511 MsG0580027094.01.T01:intron 45.0%
AAGGTTTCAAACTGCGGTTG+CGG - Chr5:53014378-53014397 MsG0580027094.01.T01:intron 45.0%
AATTCACCCTATCCACTCAC+AGG + Chr5:53015830-53015849 None:intergenic 45.0%
ACAAGTCTAGGTTGCCATCA+AGG - Chr5:53015957-53015976 MsG0580027094.01.T01:intron 45.0%
ACCTTTGGTACCCAATAGCA+GGG - Chr5:53016493-53016512 MsG0580027094.01.T01:intron 45.0%
ACGAGCTAAGGTAAACTCAC+GGG + Chr5:53013838-53013857 None:intergenic 45.0%
AGAGGAGTGGTGACTTAAAG+GGG + Chr5:53016297-53016316 None:intergenic 45.0%
AGATTGAGTCCATTCCAGGA+AGG + Chr5:53014470-53014489 None:intergenic 45.0%
AGCTTGGCCAACATTTGTCA+TGG - Chr5:53016325-53016344 MsG0580027094.01.T01:intron 45.0%
AGGAGGCAACCAAATTTCTG+TGG + Chr5:53015069-53015088 None:intergenic 45.0%
AGGGTAGGTGTGGTAAAGTT+TGG - Chr5:53016512-53016531 MsG0580027094.01.T01:intron 45.0%
AGGTACAGAAGATGACCTTG+TGG - Chr5:53016172-53016191 MsG0580027094.01.T01:intron 45.0%
AGGTCTTCTCAACCTTGGAA+CGG + Chr5:53016698-53016717 None:intergenic 45.0%
AGTTGTCCTGTGAGTGGATA+GGG - Chr5:53015821-53015840 MsG0580027094.01.T01:CDS 45.0%
AGTTTGGGAGCCATTTGACT+AGG - Chr5:53016528-53016547 MsG0580027094.01.T01:intron 45.0%
ATTCTGGTCAGTCATCCTCT+GGG - Chr5:53016366-53016385 MsG0580027094.01.T01:intron 45.0%
CAAGTCTAGGTTGCCATCAA+GGG - Chr5:53015958-53015977 MsG0580027094.01.T01:intron 45.0%
CCAAGGTTGAGAAGACCTTA+AGG - Chr5:53016700-53016719 MsG0580027094.01.T01:CDS 45.0%
CCTTAAGGTCTTCTCAACCT+TGG + Chr5:53016703-53016722 None:intergenic 45.0%
CGAGGAAACCTTGAGAATCA+TGG - Chr5:53014593-53014612 MsG0580027094.01.T01:intron 45.0%
CTCCCAATTTGACCAACCAT+TGG + Chr5:53015984-53016003 None:intergenic 45.0%
CTTGTCTGCGAAACAAGTCT+AGG - Chr5:53015945-53015964 MsG0580027094.01.T01:intron 45.0%
GAAACCTTGAGAATCATGGG+TGG - Chr5:53014597-53014616 MsG0580027094.01.T01:intron 45.0%
GAACCTTTCAGCTGTTAGGT+TGG - Chr5:53014087-53014106 MsG0580027094.01.T01:intron 45.0%
GAAGAAGACACTGCCAAAAG+GGG + Chr5:53013647-53013666 MsG0580027095.01.T01:intron 45.0%
GAGATGAAAGCAGAAGGCAA+GGG + Chr5:53015246-53015265 None:intergenic 45.0%
GATAGTCAGCAGTGATGTCT+TGG + Chr5:53014024-53014043 None:intergenic 45.0%
GATTGTTAGGATCCATCGCA+AGG + Chr5:53015089-53015108 None:intergenic 45.0%
GCAAGAACCTTTCAGCTGTT+AGG - Chr5:53014083-53014102 MsG0580027094.01.T01:intron 45.0%
GCCCAGCTTAATATGACTCA+AGG - Chr5:53014261-53014280 MsG0580027094.01.T01:intron 45.0%
GCTATTGGGTACCAAAGGTT+TGG + Chr5:53016492-53016511 None:intergenic 45.0%
GGACTTGAGATGAAAGCAGA+AGG + Chr5:53015252-53015271 None:intergenic 45.0%
GGAGGATGAGTTCAGAAACA+TGG - Chr5:53014840-53014859 MsG0580027094.01.T01:intron 45.0%
GGGTAGGTGTGGTAAAGTTT+GGG - Chr5:53016513-53016532 MsG0580027094.01.T01:intron 45.0%
GGTTGAGCCTGACAAAAGAA+GGG + Chr5:53016096-53016115 None:intergenic 45.0%
GTGAGTTTACCTTAGCTCGT+TGG - Chr5:53013838-53013857 MsG0580027094.01.T01:intron 45.0%
GTTCTTGCTGCATTCGACAT+GGG + Chr5:53014071-53014090 None:intergenic 45.0%
GTTGAGCCTGACAAAAGAAG+GGG + Chr5:53016095-53016114 None:intergenic 45.0%
GTTTGGGAGCCATTTGACTA+GGG - Chr5:53016529-53016548 MsG0580027094.01.T01:intron 45.0%
TAGTTGTCCTGTGAGTGGAT+AGG - Chr5:53015820-53015839 MsG0580027094.01.T01:CDS 45.0%
TCCATATGCAACAAGCCACA+AGG + Chr5:53016190-53016209 None:intergenic 45.0%
TGAGATGAAAGCAGAAGGCA+AGG + Chr5:53015247-53015266 None:intergenic 45.0%
TGATACTCGGGGGTTATGTT+TGG + Chr5:53016436-53016455 None:intergenic 45.0%
TGCAGACCCTTTAAGTCTGT+AGG - Chr5:53016556-53016575 MsG0580027094.01.T01:CDS 45.0%
TGGAAAAGCGACACACACTT+TGG + Chr5:53014119-53014138 None:intergenic 45.0%
TGGCCAAGCTTTACACAAAG+AGG + Chr5:53016315-53016334 None:intergenic 45.0%
TTGCACTTGAGAGGCTTGTA+GGG - Chr5:53014499-53014518 MsG0580027094.01.T01:intron 45.0%
TTGGGTACCAAAGGTTTGGA+CGG + Chr5:53016488-53016507 None:intergenic 45.0%
TTTACCTTAGCTCGTTGGCA+GGG - Chr5:53013843-53013862 MsG0580027094.01.T01:intron 45.0%
TTTCGGTACTTGCACTTGAG+AGG - Chr5:53014490-53014509 MsG0580027094.01.T01:intron 45.0%
! AGAGGCTTGTAGGGTTTTTG+GGG - Chr5:53014508-53014527 MsG0580027094.01.T01:intron 45.0%
! CAGTTTTCTCAGCCAATGTG+CGG + Chr5:53014736-53014755 None:intergenic 45.0%
! CCTTTTAGGCTTGATACTCG+GGG + Chr5:53016447-53016466 None:intergenic 45.0%
! CTTTTAGGCTTGATACTCGG+GGG + Chr5:53016446-53016465 None:intergenic 45.0%
! GAGAGGCTTGTAGGGTTTTT+GGG - Chr5:53014507-53014526 MsG0580027094.01.T01:intron 45.0%
! GGAAGAAGCCTTTTTACCGT+TGG - Chr5:53016207-53016226 MsG0580027094.01.T01:intron 45.0%
! GGCCAATGGTTGGTCAAATT+GGG - Chr5:53015979-53015998 MsG0580027094.01.T01:intron 45.0%
! GGGGTTATGTTTGGTACTGA+AGG + Chr5:53016427-53016446 None:intergenic 45.0%
! TGAGAGGCTTGTAGGGTTTT+TGG - Chr5:53014506-53014525 MsG0580027094.01.T01:intron 45.0%
! TTATTGGGGGTGTGCAATTC+AGG - Chr5:53015134-53015153 MsG0580027094.01.T01:CDS 45.0%
!! ACCTTGTGGCTTGTTGCATA+TGG - Chr5:53016186-53016205 MsG0580027094.01.T01:intron 45.0%
!! CGGCTGAGTACTGAACAATA+TGG - Chr5:53016244-53016263 MsG0580027094.01.T01:intron 45.0%
!! CTTGTAGGGTTTTTGGGGAT+GGG - Chr5:53014513-53014532 MsG0580027094.01.T01:intron 45.0%
!! GAGTACTGAACAATATGGGG+AGG - Chr5:53016249-53016268 MsG0580027094.01.T01:intron 45.0%
!!! TTCTGGTTTTGGTTGCTGAG+AGG + Chr5:53015193-53015212 None:intergenic 45.0%
AACCTGGAACTTCCTGGTCT+AGG - Chr5:53016785-53016804 MsG0580027094.01.T01:five_prime_UTR 50.0%
ACCACACCTACCCTGCTATT+GGG + Chr5:53016506-53016525 None:intergenic 50.0%
ACCCTGCTATTGGGTACCAA+AGG + Chr5:53016497-53016516 None:intergenic 50.0%
ACGCTTAGTTGTCCTGTGAG+TGG - Chr5:53015815-53015834 MsG0580027094.01.T01:CDS 50.0%
ATGACTCAAGGCACACTTGG+AGG - Chr5:53014273-53014292 MsG0580027094.01.T01:intron 50.0%
ATGGGGAGGATTGTGACTGT+AGG - Chr5:53016263-53016282 MsG0580027094.01.T01:intron 50.0%
ATTTGGTTGCCTCCTTGCGA+TGG - Chr5:53015074-53015093 MsG0580027094.01.T01:CDS 50.0%
CCCCGAGTATCAAGCCTAAA+AGG - Chr5:53016444-53016463 MsG0580027094.01.T01:intron 50.0%
CGAGCTAAGGTAAACTCACG+GGG + Chr5:53013837-53013856 None:intergenic 50.0%
CTGCAACCTCCCTAGTCAAA+TGG + Chr5:53016541-53016560 None:intergenic 50.0%
CTTGCACTTGAGAGGCTTGT+AGG - Chr5:53014498-53014517 MsG0580027094.01.T01:intron 50.0%
GAGTGGTGACTTAAAGGGGT+AGG + Chr5:53016293-53016312 None:intergenic 50.0%
GATTCTGGTCAGTCATCCTC+TGG - Chr5:53016365-53016384 MsG0580027094.01.T01:intron 50.0%
GCTTCCACCCATGATTCTCA+AGG + Chr5:53014604-53014623 None:intergenic 50.0%
GGGAAGCTCCAACGGTAAAA+AGG + Chr5:53016218-53016237 None:intergenic 50.0%
GGGTTGAGCCTGACAAAAGA+AGG + Chr5:53016097-53016116 None:intergenic 50.0%
GGTCTTCTCAACCTTGGAAC+GGG + Chr5:53016697-53016716 None:intergenic 50.0%
GGTTCTTGCTGCATTCGACA+TGG + Chr5:53014072-53014091 None:intergenic 50.0%
GTTTACCTTAGCTCGTTGGC+AGG - Chr5:53013842-53013861 MsG0580027094.01.T01:intron 50.0%
TAACTGGCCGTCCAAACCTT+TGG - Chr5:53016478-53016497 MsG0580027094.01.T01:intron 50.0%
TACCACACCTACCCTGCTAT+TGG + Chr5:53016507-53016526 None:intergenic 50.0%
TAGATTGTGGGAGAGGAGCT+TGG - Chr5:53014441-53014460 MsG0580027094.01.T01:intron 50.0%
TCCACAAGTCTCAGGAGTGA+AGG + Chr5:53014779-53014798 None:intergenic 50.0%
TCCTTCACTCCTGAGACTTG+TGG - Chr5:53014775-53014794 MsG0580027094.01.T01:intron 50.0%
TCGGTTACTCTCTTCATGCC+AGG - Chr5:53015408-53015427 MsG0580027094.01.T01:intron 50.0%
TCTCTTGAACATACCCCCAG+AGG + Chr5:53016384-53016403 None:intergenic 50.0%
TGACTCAAGGCACACTTGGA+GGG - Chr5:53014274-53014293 MsG0580027094.01.T01:intron 50.0%
TGGCTTCATCCACAAGTCTC+AGG + Chr5:53014787-53014806 None:intergenic 50.0%
TGGGTGGAAGCAGTAAAGCA+AGG - Chr5:53014613-53014632 MsG0580027094.01.T01:intron 50.0%
TGTTAGGATCCATCGCAAGG+AGG + Chr5:53015086-53015105 None:intergenic 50.0%
TTCTGGTCAGTCATCCTCTG+GGG - Chr5:53016367-53016386 MsG0580027094.01.T01:intron 50.0%
TTGGTACCCAATAGCAGGGT+AGG - Chr5:53016497-53016516 MsG0580027094.01.T01:intron 50.0%
! GCTCAAGTTTCAGGCGCTTT+TGG - Chr5:53015162-53015181 MsG0580027094.01.T01:CDS 50.0%
! GGGCCAATGGTTGGTCAAAT+TGG - Chr5:53015978-53015997 MsG0580027094.01.T01:intron 50.0%
! TCAAACTGCGGTTGCGGTTT+TGG - Chr5:53014384-53014403 MsG0580027094.01.T01:intron 50.0%
! TCAGTACTCAGCCGGTTCAA+GGG + Chr5:53016238-53016257 None:intergenic 50.0%
! TCTGGTCCCCTTCTTTTGTC+AGG - Chr5:53016086-53016105 MsG0580027094.01.T01:intron 50.0%
! TTCAGTACTCAGCCGGTTCA+AGG + Chr5:53016239-53016258 None:intergenic 50.0%
!! CTCACTTTTCTCGGCAAAGG+TGG - Chr5:53013704-53013723 MsG0580027094.01.T01:intron 50.0%
!! GCTTGTAGGGTTTTTGGGGA+TGG - Chr5:53014512-53014531 MsG0580027094.01.T01:intron 50.0%
!! GGCTCAAAGAGCACTTACGA+AGG - Chr5:53016721-53016740 MsG0580027094.01.T01:exon 50.0%
ACCCAATAGCAGGGTAGGTG+TGG - Chr5:53016502-53016521 MsG0580027094.01.T01:intron 55.0%
AGGGGACCAGACCCTAGAAT+CGG + Chr5:53016077-53016096 None:intergenic 55.0%
AGGTTGCCATCAAGGGCCAA+TGG - Chr5:53015965-53015984 MsG0580027094.01.T01:intron 55.0%
AGTAGGAGGGAAGAGAGGAG+AGG - Chr5:53015910-53015929 MsG0580027094.01.T01:intron 55.0%
ATGTCCCTGCCAACGAGCTA+AGG + Chr5:53013850-53013869 None:intergenic 55.0%
CAGGCTGGTGCTCAAGTTTC+AGG - Chr5:53015153-53015172 MsG0580027094.01.T01:CDS 55.0%
CGGTTCAAGGGAAGCTCCAA+CGG + Chr5:53016226-53016245 None:intergenic 55.0%
CGTTGGAGCTTCCCTTGAAC+CGG - Chr5:53016224-53016243 MsG0580027094.01.T01:intron 55.0%
GACCAACCATTGGCCCTTGA+TGG + Chr5:53015974-53015993 None:intergenic 55.0%
GACTCAAGGCACACTTGGAG+GGG - Chr5:53014275-53014294 MsG0580027094.01.T01:intron 55.0%
GAGAATGGTGACCCGTTCCA+AGG - Chr5:53016683-53016702 MsG0580027094.01.T01:CDS 55.0%
GCTTGGCATCCTTCCTGGAA+TGG - Chr5:53014458-53014477 MsG0580027094.01.T01:intron 55.0%
GGAAGAGAGGAGAGGATGCT+TGG - Chr5:53015918-53015937 MsG0580027094.01.T01:intron 55.0%
GGCTCAAACCTGGAACTTCC+TGG - Chr5:53016779-53016798 MsG0580027094.01.T01:five_prime_UTR 55.0%
TACCTGAGCGGCGAAGATAG+CGG + Chr5:53013747-53013766 None:intergenic 55.0%
TCTGGTCAGTCATCCTCTGG+GGG - Chr5:53016368-53016387 MsG0580027094.01.T01:intron 55.0%
TGCCATCAAGGGCCAATGGT+TGG - Chr5:53015969-53015988 MsG0580027094.01.T01:intron 55.0%
TGGGAGCCATTTGACTAGGG+AGG - Chr5:53016532-53016551 MsG0580027094.01.T01:intron 55.0%
TTTCTCGGCAAAGGTGGCTC+TGG - Chr5:53013710-53013729 MsG0580027094.01.T01:intron 55.0%
! ATACGATGGTGTCAGCAGCG+AGG - Chr5:53014575-53014594 MsG0580027094.01.T01:intron 55.0%
CAAGGCACACTTGGAGGGGT+GGG - Chr5:53014279-53014298 MsG0580027094.01.T01:intron 60.0%
GAGGAGCTTGGCATCCTTCC+TGG - Chr5:53014453-53014472 MsG0580027094.01.T01:intron 60.0%
TCAAGGCACACTTGGAGGGG+TGG - Chr5:53014278-53014297 MsG0580027094.01.T01:intron 60.0%
TCCAGGTTTGAGCCCCGCTA+AGG + Chr5:53016773-53016792 None:intergenic 60.0%
! TGGGGGTGTGCAATTCAGGC+TGG - Chr5:53015138-53015157 MsG0580027094.01.T01:CDS 60.0%
!! GGCGTTCCGATTCTAGGGTC+TGG - Chr5:53016068-53016087 MsG0580027094.01.T01:intron 60.0%
CCTCCCACCAAGGGCCTTAG+CGG - Chr5:53016756-53016775 MsG0580027094.01.T01:five_prime_UTR 65.0%
CTCCCACCAAGGGCCTTAGC+GGG - Chr5:53016757-53016776 MsG0580027094.01.T01:five_prime_UTR 65.0%
GCCTTAGCGGGGCTCAAACC+TGG - Chr5:53016769-53016788 MsG0580027094.01.T01:five_prime_UTR 65.0%
TCCCACCAAGGGCCTTAGCG+GGG - Chr5:53016758-53016777 MsG0580027094.01.T01:five_prime_UTR 65.0%
TTGAGCCCCGCTAAGGCCCT+TGG + Chr5:53016766-53016785 None:intergenic 65.0%
! CTGAGCGGCGAAGATAGCGG+CGG + Chr5:53013744-53013763 None:intergenic 65.0%
AGCCCCGCTAAGGCCCTTGG+TGG + Chr5:53016763-53016782 None:intergenic 70.0%
CCGCTAAGGCCCTTGGTGGG+AGG + Chr5:53016759-53016778 None:intergenic 70.0%
CGCCGCTATCTTCGCCGCTC+AGG - Chr5:53013742-53013761 MsG0580027094.01.T01:intron 70.0%
GCCCCGCTAAGGCCCTTGGT+GGG + Chr5:53016762-53016781 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 53013500 53016806 53013500 ID=MsG0580027094.01;Name=MsG0580027094.01
Chr5 mRNA 53013500 53016806 53013500 ID=MsG0580027094.01.T01;Parent=MsG0580027094.01;Name=MsG0580027094.01.T01;_AED=0.39;_eAED=0.45;_QI=81|0.6|0.66|1|1|1|6|129|348
Chr5 exon 53013500 53013630 53013500 ID=MsG0580027094.01.T01:exon:17431;Parent=MsG0580027094.01.T01
Chr5 exon 53014841 53015264 53014841 ID=MsG0580027094.01.T01:exon:17430;Parent=MsG0580027094.01.T01
Chr5 exon 53015420 53015591 53015420 ID=MsG0580027094.01.T01:exon:17429;Parent=MsG0580027094.01.T01
Chr5 exon 53015672 53015862 53015672 ID=MsG0580027094.01.T01:exon:17428;Parent=MsG0580027094.01.T01
Chr5 exon 53016010 53016084 53016010 ID=MsG0580027094.01.T01:exon:17427;Parent=MsG0580027094.01.T01
Chr5 exon 53016543 53016806 53016543 ID=MsG0580027094.01.T01:exon:17426;Parent=MsG0580027094.01.T01
Chr5 five_prime_UTR 53016726 53016806 53016726 ID=MsG0580027094.01.T01:five_prime_utr;Parent=MsG0580027094.01.T01
Chr5 CDS 53016543 53016725 53016543 ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5 CDS 53016010 53016084 53016010 ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5 CDS 53015672 53015862 53015672 ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5 CDS 53015420 53015591 53015420 ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5 CDS 53014841 53015264 53014841 ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5 CDS 53013629 53013630 53013629 ID=MsG0580027094.01.T01:cds;Parent=MsG0580027094.01.T01
Chr5 three_prime_UTR 53013500 53013628 53013500 ID=MsG0580027094.01.T01:three_prime_utr;Parent=MsG0580027094.01.T01
Gene Sequence

>MsG0580027094.01.T01

ATGGGTTCAATTTCGAGCTTCACATTTCCGGTTCTTTGTCGTTCAACTTCTGTTCGAACTAAACCCCTTTTGGCAGTGTCTTCTTCTTCTTCTTCTTCCGAGGATGTTGCTTCAACTAAATTACTCACTTTTCTCGGCAAAGGTGGCTCTGGCAAAACTACCGCCGCTATCTTCGCCGCTCAGATGCTTCTTGAACCCCTAAAACTTCTGAAGCAAGCAGATGCCCAGCTTAATATGACTCAAGGCACACTTGGAGGGATTGTGGGAGAGGAGCTTGGCATCCTTCCTGGAATGGACTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGGGATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATACGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTGTATTTAAAATATATCCGCACATTGGCTGAGAAAACTGAAATTGGTAGATTGGCTGCTCCTTCACTCCTGAGACTTGTGGATGAAGCCATGAAAATAAATAGCAGCAGATCTTATTTCAATGGGAGGATGAGTTCAGAAACATGGGACACTTTGGATCAAATTCTGGAGAAAGGATCTTCTGCCTTCTCAAATCCACAGAAATTTGGTTGCCTCCTTGCGATGGATCCTAACAATCCAACCTCTGTCAATTCTGCATTACGTTATTGGGGGTGTGCAATTCAGGCTGGTGCTCAAGTTTCAGGCGCTTTTGGAATTTCCTCTCAGCAACCAAAACCAGAATCATACGAAAGAACAAAGAAAGATCTTTCTCCCTTGCCTTCTGCTTTCATCTCAAGTCCGTTAGTAAATAGCCCAATAGATTGGAACAGAGTTTTACTGGACACTGTGAATAAAGATGCTAGGCAATTTCTTACTTCACTGTCAAGCCAATCCAGTAACATGACATCATCAGTTAAATTTGATGTCATAAGAAAATCGGTTACTCTCTTCATGCCAGGTTTTGACAAATCAGAGATTAAGCTATATCAAGTATAG

Protein sequence

>MsG0580027094.01.T01

MGSISSFTFPVLCRSTSVRTKPLLAVSSSSSSSEDVASTKLLTFLGKGGSGKTTAAIFAAQMLLEPLKLLKQADAQLNMTQGTLGGIVGEELGILPGMDSIFSVLALERLVGFLGMGSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARLYLKYIRTLAEKTEIGRLAAPSLLRLVDEAMKINSSRSYFNGRMSSETWDTLDQILEKGSSAFSNPQKFGCLLAMDPNNPTSVNSALRYWGCAIQAGAQVSGAFGISSQQPKPESYERTKKDLSPLPSAFISSPLVNSPIDWNRVLLDTVNKDARQFLTSLSSQSSNMTSSVKFDVIRKSVTLFMPGFDKSEIKLYQV*