AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042009.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042009.01.T01 MTR_8g009280 65.089 169 14 2 90 258 12 135 1.19e-64 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042009.01.T01 AT2G44650 47.651 149 35 2 110 258 34 139 2.76e-41 139
MsG0880042009.01.T01 AT3G60210 47.682 151 34 2 109 258 32 138 3.29e-41 138

Find 75 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCGTTAAAATGAATAAA+AGG 0.164983 8:-2417631 None:intergenic
CTATATTCAATTTGGTCTTA+TGG 0.213202 8:-2415072 None:intergenic
CAGCCTCGGCACCAACATTT+AGG 0.253224 8:-2419021 None:intergenic
TTTCCAATCTCATTCATATA+CGG 0.290452 8:-2415148 None:intergenic
AAACATTTCTATATTCAATT+TGG 0.292418 8:-2415080 None:intergenic
TATGAATGAGATTGGAAATA+AGG 0.299461 8:+2415153 MsG0880042009.01.T01:CDS
TGAATACATTATTATCAAAA+AGG 0.306931 8:-2421231 None:intergenic
TATTCTTTGTTGACATTCCT+TGG 0.313698 8:+2421307 MsG0880042009.01.T01:three_prime_UTR
GTATTCATGGCAAATGTATT+AGG 0.331892 8:+2421247 MsG0880042009.01.T01:three_prime_UTR
TAAGAAATGGGAACCCTCTA+AGG 0.340240 8:+2417723 MsG0880042009.01.T01:CDS
AGGTTGTGCCTCAGGCTGAT+AGG 0.348377 8:+2417840 MsG0880042009.01.T01:intron
CATTAAATCAAGTGACTTGT+TGG 0.348829 8:+2421161 MsG0880042009.01.T01:CDS
TTGGGCTCCGGAGGCTCACC+AGG 0.363910 8:+2419740 MsG0880042009.01.T01:CDS
AGAAATTGGAATAACCTTAG+AGG 0.365531 8:-2417737 None:intergenic
TTAATGCAATTGCTAAGAAA+TGG 0.381136 8:+2417710 MsG0880042009.01.T01:CDS
GGCCGTCGTTGAGTAGGGTT+TGG 0.386350 8:+2421182 MsG0880042009.01.T01:exon
ATTCTTTGTTGACATTCCTT+GGG 0.391711 8:+2421308 MsG0880042009.01.T01:three_prime_UTR
AGTGACGAAATGATACCTTT+AGG 0.394240 8:+2421464 MsG0880042009.01.T01:three_prime_UTR
GAATTATACTTGGGAGTCTC+TGG 0.395066 8:-2417571 None:intergenic
CTCAAATTTAACAGCTGACT+TGG 0.404760 8:-2418890 None:intergenic
TGGATTGCAGGTTGTGCCTC+AGG 0.408276 8:+2417832 MsG0880042009.01.T01:intron
CACCGACATAAATGCTTATG+AGG 0.413729 8:+2420842 MsG0880042009.01.T01:CDS
CTTGTTGGCCGTCGTTGAGT+AGG 0.414558 8:+2421176 MsG0880042009.01.T01:CDS
ATTCCGTATATGAATGAGAT+TGG 0.415601 8:+2415145 MsG0880042009.01.T01:CDS
TTGTGAAGGAAGGGAGTTGT+TGG 0.416342 8:-2417524 None:intergenic
CAGGGTCAAGGCAGGCCTTA+AGG 0.417087 8:+2419759 MsG0880042009.01.T01:CDS
TACACGTTCGTTGAGCCTTA+AGG 0.430469 8:-2419774 None:intergenic
CAATGAAAGTTTAGGTGTGT+TGG 0.433107 8:+2419721 MsG0880042009.01.T01:CDS
CCTTGACCCTGGTGAGCCTC+CGG 0.440656 8:-2419747 None:intergenic
TTTGAAGAGGAACTCTTTGA+AGG 0.442390 8:+2417687 MsG0880042009.01.T01:CDS
TTATCTCTTATCCATTATCA+TGG 0.443311 8:+2417481 MsG0880042009.01.T01:CDS
AAATGTGGAAGCCATGATAA+TGG 0.443462 8:-2417492 None:intergenic
TTAACATTAATCAAAATCCT+TGG 0.446289 8:+2421513 MsG0880042009.01.T01:three_prime_UTR
AGTTTAGGTGTGTTGGGCTC+CGG 0.450346 8:+2419728 MsG0880042009.01.T01:CDS
TTGTTTATTTACTATGAAAG+AGG 0.457207 8:+2419072 MsG0880042009.01.T01:CDS
AATGAACTGTTATCAATCAT+TGG 0.459294 8:+2421275 MsG0880042009.01.T01:three_prime_UTR
AATGAAAGTTTAGGTGTGTT+GGG 0.467337 8:+2419722 MsG0880042009.01.T01:CDS
AGTAGAAGAAGAATTATACT+TGG 0.472311 8:-2417581 None:intergenic
TAATGCAATTGCTAAGAAAT+GGG 0.473150 8:+2417711 MsG0880042009.01.T01:CDS
TGATACCTTTAGGCTGGAGT+TGG 0.477447 8:+2421474 MsG0880042009.01.T01:three_prime_UTR
GGTTGTGCCTCAGGCTGATA+GGG 0.488435 8:+2417841 MsG0880042009.01.T01:intron
AAATTGAATATAGAAATGTT+TGG 0.493251 8:+2415082 MsG0880042009.01.T01:CDS
TTGTTTCAGGTCCTAAATGT+TGG 0.499652 8:+2419010 MsG0880042009.01.T01:intron
TTGTTGGCCGTCGTTGAGTA+GGG 0.502146 8:+2421177 MsG0880042009.01.T01:CDS
AAATTTGAGCGATATCTTGT+GGG 0.511491 8:+2418904 MsG0880042009.01.T01:CDS
GAAATTGGAATAACCTTAGA+GGG 0.512239 8:-2417736 None:intergenic
CTTCGTTAAAATGAATAAAA+GGG 0.512576 8:-2417630 None:intergenic
TAAATTTGAGCGATATCTTG+TGG 0.516085 8:+2418903 MsG0880042009.01.T01:CDS
TAGGGTTCTTATTCGTCTTG+AGG 0.524050 8:+2417859 MsG0880042009.01.T01:CDS
ACGAAATGATACCTTTAGGC+TGG 0.526719 8:+2421468 MsG0880042009.01.T01:three_prime_UTR
AGGCTCACCAGGGTCAAGGC+AGG 0.539310 8:+2419751 MsG0880042009.01.T01:CDS
CCGGAGGCTCACCAGGGTCA+AGG 0.543244 8:+2419747 MsG0880042009.01.T01:CDS
CTTAAGGCCTGCCTTGACCC+TGG 0.544085 8:-2419758 None:intergenic
TTCTTTGTTGACATTCCTTG+GGG 0.545808 8:+2421309 MsG0880042009.01.T01:three_prime_UTR
TCAAATTTAACAGCTGACTT+GGG 0.548423 8:-2418889 None:intergenic
GGTTTCCAACTCCAGCCTAA+AGG 0.549480 8:-2421479 None:intergenic
TGTTGGTATGGTGAGAAATG+TGG 0.554797 8:-2417507 None:intergenic
GAGGCTGAAAATGTAAAAGC+TGG 0.554966 8:+2419037 MsG0880042009.01.T01:CDS
TATACTTGGGAGTCTCTGGT+TGG 0.556109 8:-2417567 None:intergenic
AGGTATCATTTCGTCACTGA+AGG 0.572999 8:-2421459 None:intergenic
TTAGGTGTGTTGGGCTCCGG+AGG 0.574323 8:+2419731 MsG0880042009.01.T01:CDS
CTGGTTGGAGAAAGAAGCGG+TGG 0.589531 8:-2417552 None:intergenic
TTTGGGCAGAAAACTGCTGG+TGG 0.594539 8:+2418856 MsG0880042009.01.T01:intron
AAGGAAGGGAGTTGTTGGTA+TGG 0.597282 8:-2417519 None:intergenic
AAATGTAAAAGCTGGCTCGA+AGG 0.601859 8:+2419045 MsG0880042009.01.T01:CDS
GTAGAAGAAGAATTATACTT+GGG 0.606630 8:-2417580 None:intergenic
GGTCCTAAATGTTGGTGCCG+AGG 0.613958 8:+2419018 MsG0880042009.01.T01:intron
CTGCTCTTTGTCTCACAAAG+CGG 0.654255 8:-2421205 None:intergenic
GGTTGGAGAAAGAAGCGGTG+GGG 0.659685 8:-2417550 None:intergenic
AACCTCATAAGCATTTATGT+CGG 0.663411 8:-2420844 None:intergenic
TGGGCTCCGGAGGCTCACCA+GGG 0.665301 8:+2419741 MsG0880042009.01.T01:CDS
GGCCAAACCCTACTCAACGA+CGG 0.678555 8:-2421184 None:intergenic
TGGTTGGAGAAAGAAGCGGT+GGG 0.681233 8:-2417551 None:intergenic
ATAAGAACCCTATCAGCCTG+AGG 0.720606 8:-2417848 None:intergenic
TCTCTGGTTGGAGAAAGAAG+CGG 0.732198 8:-2417555 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTATTTTAATTTTTT+TGG - Chr8:2417158-2417177 None:intergenic 0.0%
!!! AATATTATTTTAATTTTTTT+GGG - Chr8:2417157-2417176 None:intergenic 0.0%
!!! ATTTTTTTTAATTTTTTTTA+GGG - Chr8:2417230-2417249 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTAATTT+GGG + Chr8:2417923-2417942 MsG0880042009.01.T01:intron 0.0%
!! AAAAAATTTGAAAAATGAAA+AGG - Chr8:2416826-2416845 None:intergenic 10.0%
!! AAAAATAAAAAACATAATAC+GGG + Chr8:2417083-2417102 MsG0880042009.01.T01:intron 10.0%
!! ATAAAAAGATTAATTATAAG+TGG + Chr8:2416139-2416158 MsG0880042009.01.T01:intron 10.0%
!! GTACATTAAAAATTAAATTA+TGG + Chr8:2416360-2416379 MsG0880042009.01.T01:intron 10.0%
!! GTTCAAAAAAAATTTAAATA+TGG - Chr8:2420770-2420789 None:intergenic 10.0%
!!! ACTTCTTTTATTTATTTTTT+TGG - Chr8:2417311-2417330 None:intergenic 10.0%
!!! ATTTATATTTTTAGTGATAT+TGG + Chr8:2416674-2416693 MsG0880042009.01.T01:intron 10.0%
!!! TATTAACTTTTTTTTCATTT+GGG + Chr8:2417653-2417672 MsG0880042009.01.T01:CDS 10.0%
!! AAACATTTCTATATTCAATT+TGG - Chr8:2415083-2415102 None:intergenic 15.0%
!! AAATTGAATATAGAAATGTT+TGG + Chr8:2415082-2415101 MsG0880042009.01.T01:CDS 15.0%
!! AGTATATAACAATAAGTTAT+AGG - Chr8:2418692-2418711 None:intergenic 15.0%
!! ATATTTGTACTTATGTATAA+AGG + Chr8:2420879-2420898 MsG0880042009.01.T01:intron 15.0%
!! GTATATAACAATAAGTTATA+GGG - Chr8:2418691-2418710 None:intergenic 15.0%
!! TGAATACATTATTATCAAAA+AGG - Chr8:2421234-2421253 None:intergenic 15.0%
!! TTAAATGAATTAATCAATGT+CGG + Chr8:2420913-2420932 MsG0880042009.01.T01:intron 15.0%
!!! GATTGTGAATATAATTTTTT+GGG + Chr8:2418839-2418858 MsG0880042009.01.T01:intron 15.0%
!!! GTATTAACTTTTTTTTCATT+TGG + Chr8:2417652-2417671 MsG0880042009.01.T01:CDS 15.0%
!!! TACTACTATGAATTTTTTTT+AGG - Chr8:2417262-2417281 None:intergenic 15.0%
!!! TATGATTTTTGGTTATTTTT+TGG + Chr8:2417812-2417831 MsG0880042009.01.T01:intron 15.0%
!!! TATTTATTTTTTTGGTTACA+TGG - Chr8:2417303-2417322 None:intergenic 15.0%
!!! TGATTGTGAATATAATTTTT+TGG + Chr8:2418838-2418857 MsG0880042009.01.T01:intron 15.0%
!!! TTATGGTATTCTTTTTATTT+TGG - Chr8:2415219-2415238 None:intergenic 15.0%
!!! TTTTGATAATAATGTATTCA+TGG + Chr8:2421234-2421253 MsG0880042009.01.T01:three_prime_UTR 15.0%
!! AAAAATAACAAATAAGGTGT+TGG + Chr8:2415751-2415770 MsG0880042009.01.T01:intron 20.0%
!! AAATAAAGGAAAATAGTTAG+TGG + Chr8:2420707-2420726 MsG0880042009.01.T01:intron 20.0%
!! ACTTCGTTAAAATGAATAAA+AGG - Chr8:2417634-2417653 None:intergenic 20.0%
!! ATATGAGTGTTAACATAATA+GGG + Chr8:2417048-2417067 MsG0880042009.01.T01:intron 20.0%
!! ATTAATGTTAAAAAGAGAGA+AGG - Chr8:2421504-2421523 None:intergenic 20.0%
!! ATTCAAAACTAATGTAACAA+AGG + Chr8:2416942-2416961 MsG0880042009.01.T01:intron 20.0%
!! CAAATATAGAAACAATGTAT+CGG - Chr8:2418629-2418648 None:intergenic 20.0%
!! CTTCGTTAAAATGAATAAAA+GGG - Chr8:2417633-2417652 None:intergenic 20.0%
!! TAGTTCAAATGATGAAATAA+AGG + Chr8:2420693-2420712 MsG0880042009.01.T01:intron 20.0%
!! TGGATAATAAACCTAAAAAA+GGG + Chr8:2417397-2417416 MsG0880042009.01.T01:intron 20.0%
!! TTAACATTAATCAAAATCCT+TGG + Chr8:2421513-2421532 MsG0880042009.01.T01:three_prime_UTR 20.0%
!! TTAATGTTAAAAAGAGAGAA+GGG - Chr8:2421503-2421522 None:intergenic 20.0%
!! TTACTAATTAATTAGTTGTG+AGG + Chr8:2419893-2419912 MsG0880042009.01.T01:intron 20.0%
!! TTATAAAGTACACTGTAATA+CGG - Chr8:2415473-2415492 None:intergenic 20.0%
!! TTGTTTATTTACTATGAAAG+AGG + Chr8:2419072-2419091 MsG0880042009.01.T01:CDS 20.0%
!! TTTGTAATATGAGATATTTC+AGG + Chr8:2420060-2420079 MsG0880042009.01.T01:intron 20.0%
!!! AATCATAATTATTCTTTTGC+AGG + Chr8:2420812-2420831 MsG0880042009.01.T01:intron 20.0%
!!! AATCATTATGGTAATTTGTT+GGG + Chr8:2420144-2420163 MsG0880042009.01.T01:intron 20.0%
!!! AATTCTAATTTGTAACTCAA+CGG + Chr8:2421057-2421076 MsG0880042009.01.T01:intron 20.0%
!!! AATTTTTTTGGATAAGATTG+TGG - Chr8:2417901-2417920 None:intergenic 20.0%
!!! TAAGGGAATATTTCTTTTTT+TGG - Chr8:2418551-2418570 None:intergenic 20.0%
!!! TATGTCAATTTTTTTGTTAC+AGG + Chr8:2416720-2416739 MsG0880042009.01.T01:intron 20.0%
!!! TGAATCTTTATTGTTTTTTC+CGG - Chr8:2416927-2416946 None:intergenic 20.0%
!!! TTGTTTTTGCATATGATTTT+TGG + Chr8:2417801-2417820 MsG0880042009.01.T01:intron 20.0%
! AACAATGTGATCAGTTTAAA+AGG - Chr8:2416049-2416068 None:intergenic 25.0%
! AATGAACTGTTATCAATCAT+TGG + Chr8:2421275-2421294 MsG0880042009.01.T01:three_prime_UTR 25.0%
! AATTGAATGCACAAAGTTTA+AGG - Chr8:2418569-2418588 None:intergenic 25.0%
! AGACATTAGTTCAATCATTA+TGG + Chr8:2420132-2420151 MsG0880042009.01.T01:intron 25.0%
! AGTAAGTATACATATTGCAT+AGG + Chr8:2418930-2418949 MsG0880042009.01.T01:intron 25.0%
! AGTAGAAGAAGAATTATACT+TGG - Chr8:2417584-2417603 None:intergenic 25.0%
! AGTGGTTATTCAATTTAATG+AGG + Chr8:2416157-2416176 MsG0880042009.01.T01:intron 25.0%
! ATAAAAAGGCAATAAGTCTT+TGG - Chr8:2416904-2416923 None:intergenic 25.0%
! ATATTGTAATCCACTTTCTT+GGG - Chr8:2416457-2416476 None:intergenic 25.0%
! ATTATATTCACAATCATGCA+TGG - Chr8:2418834-2418853 None:intergenic 25.0%
! ATTATGTTAACACTCATATC+AGG - Chr8:2417047-2417066 None:intergenic 25.0%
! ATTGAATGCACAAAGTTTAA+GGG - Chr8:2418568-2418587 None:intergenic 25.0%
! CAGAAAATGAAAAGAGAAAT+TGG - Chr8:2417754-2417773 None:intergenic 25.0%
! GATATGAGTGTTAACATAAT+AGG + Chr8:2417047-2417066 MsG0880042009.01.T01:intron 25.0%
! GTAGAAGAAGAATTATACTT+GGG - Chr8:2417583-2417602 None:intergenic 25.0%
! GTGAATGTGATTTAACTATT+TGG + Chr8:2418728-2418747 MsG0880042009.01.T01:intron 25.0%
! GTGATATGATAAAATCAGAT+CGG - Chr8:2415892-2415911 None:intergenic 25.0%
! GTGGATAATAAACCTAAAAA+AGG + Chr8:2417396-2417415 MsG0880042009.01.T01:intron 25.0%
! TAAATTACCGATATTCAATG+TGG + Chr8:2419361-2419380 MsG0880042009.01.T01:intron 25.0%
! TAATGCAATTGCTAAGAAAT+GGG + Chr8:2417711-2417730 MsG0880042009.01.T01:CDS 25.0%
! TATGAACAAGTTCATAACTT+GGG - Chr8:2420422-2420441 None:intergenic 25.0%
! TATGAATGAGATTGGAAATA+AGG + Chr8:2415153-2415172 MsG0880042009.01.T01:CDS 25.0%
! TGTAATTGGCACTTATAAAT+TGG + Chr8:2418807-2418826 MsG0880042009.01.T01:intron 25.0%
! TTAATGCAATTGCTAAGAAA+TGG + Chr8:2417710-2417729 MsG0880042009.01.T01:CDS 25.0%
! TTACTAAGAAAATTGCTCTA+TGG + Chr8:2415589-2415608 MsG0880042009.01.T01:intron 25.0%
! TTATCTCTTATCCATTATCA+TGG + Chr8:2417481-2417500 MsG0880042009.01.T01:CDS 25.0%
! TTATGAACAAGTTCATAACT+TGG - Chr8:2420423-2420442 None:intergenic 25.0%
! TTATGTTAACACTCATATCA+GGG - Chr8:2417046-2417065 None:intergenic 25.0%
! TTATTTGTACAGTATCTATC+TGG + Chr8:2420356-2420375 MsG0880042009.01.T01:intron 25.0%
! TTCAGATGTAAAACAACATA+AGG - Chr8:2418958-2418977 None:intergenic 25.0%
! TTTCCAATCTCATTCATATA+CGG - Chr8:2415151-2415170 None:intergenic 25.0%
!! AAAGTACAACAACTTTTGTA+CGG + Chr8:2415496-2415515 MsG0880042009.01.T01:intron 25.0%
!! ACTTTTAGCAATGAAAGTTT+AGG + Chr8:2419713-2419732 MsG0880042009.01.T01:CDS 25.0%
!! CAATCATTATGGTAATTTGT+TGG + Chr8:2420143-2420162 MsG0880042009.01.T01:intron 25.0%
!! CAATTTCTCTTTTCATTTTC+TGG + Chr8:2417752-2417771 MsG0880042009.01.T01:intron 25.0%
!! GTCTAAACTTGATAATATAG+AGG + Chr8:2420602-2420621 MsG0880042009.01.T01:intron 25.0%
!! TTAAGTTGCTATTGTAAACT+GGG - Chr8:2419344-2419363 None:intergenic 25.0%
!! TTACAAAATGTTCGTTCTTT+TGG - Chr8:2415331-2415350 None:intergenic 25.0%
!! TTGTGTCTAAAGAAATTTTC+AGG + Chr8:2420465-2420484 MsG0880042009.01.T01:intron 25.0%
!! TTTCCTTTTGTATTTGTTTC+AGG + Chr8:2418997-2419016 MsG0880042009.01.T01:intron 25.0%
!! TTTTAGTGATATTGGATATG+AGG + Chr8:2416682-2416701 MsG0880042009.01.T01:intron 25.0%
!!! ACTTTGAAATAAGATGATGT+TGG + Chr8:2416384-2416403 MsG0880042009.01.T01:intron 25.0%
!!! ATAACACAATTTTGAAGAAG+CGG - Chr8:2420314-2420333 None:intergenic 25.0%
!!! ATTGTTTTTTCCGGATAAAA+AGG - Chr8:2416918-2416937 None:intergenic 25.0%
!!! ATTTTTTAAGAACCACATTC+GGG + Chr8:2420512-2420531 MsG0880042009.01.T01:intron 25.0%
!!! CATTTTTTAAGAACCACATT+CGG + Chr8:2420511-2420530 MsG0880042009.01.T01:intron 25.0%
!!! CGATACATTGTTTCTATATT+TGG + Chr8:2418627-2418646 MsG0880042009.01.T01:intron 25.0%
!!! CTATATTCAATTTGGTCTTA+TGG - Chr8:2415075-2415094 None:intergenic 25.0%
!!! TATTGGTCTAATTGTTTTTC+AGG + Chr8:2421107-2421126 MsG0880042009.01.T01:intron 25.0%
!!! TCTGGTTTTTTGTTTTTGAA+AGG + Chr8:2417770-2417789 MsG0880042009.01.T01:intron 25.0%
!!! TTTAAGTTGCTATTGTAAAC+TGG - Chr8:2419345-2419364 None:intergenic 25.0%
AAAACTAAGCTGTATCACAT+TGG + Chr8:2418247-2418266 MsG0880042009.01.T01:intron 30.0%
AAACTGATCACATTGTTGTA+TGG + Chr8:2416052-2416071 MsG0880042009.01.T01:intron 30.0%
AAATTTGAGCGATATCTTGT+GGG + Chr8:2418904-2418923 MsG0880042009.01.T01:CDS 30.0%
AACACATCAAATTCATGACA+CGG - Chr8:2418205-2418224 None:intergenic 30.0%
AACCAACATGATCAGATATT+AGG - Chr8:2415832-2415851 None:intergenic 30.0%
AACCTCATAAGCATTTATGT+CGG - Chr8:2420847-2420866 None:intergenic 30.0%
AATGAAAGTTTAGGTGTGTT+GGG + Chr8:2419722-2419741 MsG0880042009.01.T01:CDS 30.0%
ACTACCCTAAGTTATATGTA+TGG - Chr8:2418493-2418512 None:intergenic 30.0%
ACTCATTAATCAAATGACCA+TGG + Chr8:2420553-2420572 MsG0880042009.01.T01:intron 30.0%
AGAAATTGGAATAACCTTAG+AGG - Chr8:2417740-2417759 None:intergenic 30.0%
ATCCTAATATCTGATCATGT+TGG + Chr8:2415827-2415846 MsG0880042009.01.T01:intron 30.0%
ATTCCGTATATGAATGAGAT+TGG + Chr8:2415145-2415164 MsG0880042009.01.T01:CDS 30.0%
ATTCTTTGTTGACATTCCTT+GGG + Chr8:2421308-2421327 MsG0880042009.01.T01:three_prime_UTR 30.0%
ATTTCATTACCAATAACTCC+AGG - Chr8:2419300-2419319 None:intergenic 30.0%
CAAAACTAATGTAACAAAGG+AGG + Chr8:2416945-2416964 MsG0880042009.01.T01:intron 30.0%
CAAAGTGATAATAGAAACCA+TGG - Chr8:2420573-2420592 None:intergenic 30.0%
CAATGAGGATATATCAGATT+AGG - Chr8:2418280-2418299 None:intergenic 30.0%
CACACTTAAATATGATGAGA+AGG + Chr8:2419870-2419889 MsG0880042009.01.T01:intron 30.0%
CATATTGTAATCCACTTTCT+TGG - Chr8:2416458-2416477 None:intergenic 30.0%
GAAATTGGAATAACCTTAGA+GGG - Chr8:2417739-2417758 None:intergenic 30.0%
GATACGATTAGGTACAAAAA+TGG + Chr8:2415186-2415205 MsG0880042009.01.T01:intron 30.0%
GATGCCATACATATAACTTA+GGG + Chr8:2418486-2418505 MsG0880042009.01.T01:intron 30.0%
GTATTCATGGCAAATGTATT+AGG + Chr8:2421247-2421266 MsG0880042009.01.T01:three_prime_UTR 30.0%
GTGTAATTAAGACATCGTAT+GGG + Chr8:2416094-2416113 MsG0880042009.01.T01:intron 30.0%
GTTGAAATAGTGATACGATT+AGG + Chr8:2415175-2415194 MsG0880042009.01.T01:intron 30.0%
TAAATTTGAGCGATATCTTG+TGG + Chr8:2418903-2418922 MsG0880042009.01.T01:CDS 30.0%
TACTCATAAGTCATGTAAGA+AGG + Chr8:2418415-2418434 MsG0880042009.01.T01:intron 30.0%
TATAATAAGTATCCCGAATG+TGG - Chr8:2420527-2420546 None:intergenic 30.0%
TATGATAAAATCAGATCGGA+TGG - Chr8:2415888-2415907 None:intergenic 30.0%
TATTCTTTGTTGACATTCCT+TGG + Chr8:2421307-2421326 MsG0880042009.01.T01:three_prime_UTR 30.0%
TGACATAAATCCTAATCACA+AGG + Chr8:2419253-2419272 MsG0880042009.01.T01:intron 30.0%
TGATGCCATACATATAACTT+AGG + Chr8:2418485-2418504 MsG0880042009.01.T01:intron 30.0%
TGCAGTTATCTCGATAATAA+GGG - Chr8:2418357-2418376 None:intergenic 30.0%
TGCTTGCCATTGTAAAATTA+GGG - Chr8:2419222-2419241 None:intergenic 30.0%
TGTCATGAATTTGATGTGTT+TGG + Chr8:2418205-2418224 MsG0880042009.01.T01:intron 30.0%
TGTGTAATTAAGACATCGTA+TGG + Chr8:2416093-2416112 MsG0880042009.01.T01:intron 30.0%
TTGCAGTTATCTCGATAATA+AGG - Chr8:2418358-2418377 None:intergenic 30.0%
TTGCTTGCCATTGTAAAATT+AGG - Chr8:2419223-2419242 None:intergenic 30.0%
TTTCATTACCAATAACTCCA+GGG - Chr8:2419299-2419318 None:intergenic 30.0%
! AATGTGATGCAACATTTTTG+AGG + Chr8:2420085-2420104 MsG0880042009.01.T01:intron 30.0%
! AGACTTATTGCCTTTTTATC+CGG + Chr8:2416905-2416924 MsG0880042009.01.T01:intron 30.0%
! ATCTGAAGAACAACTTTTGT+GGG + Chr8:2420949-2420968 MsG0880042009.01.T01:intron 30.0%
! ATGTAAGAAGGTATAGACTA+GGG + Chr8:2418427-2418446 MsG0880042009.01.T01:intron 30.0%
! CATTAAATCAAGTGACTTGT+TGG + Chr8:2421161-2421180 MsG0880042009.01.T01:CDS 30.0%
! GAATGTTGGATTTGTTTGTA+GGG + Chr8:2418142-2418161 MsG0880042009.01.T01:intron 30.0%
! TATCTGAAGAACAACTTTTG+TGG + Chr8:2420948-2420967 MsG0880042009.01.T01:intron 30.0%
! TCAAATTTAACAGCTGACTT+GGG - Chr8:2418892-2418911 None:intergenic 30.0%
! TGAATGTTGGATTTGTTTGT+AGG + Chr8:2418141-2418160 MsG0880042009.01.T01:intron 30.0%
!! AAAGAATGGATTGGAATTTG+GGG - Chr8:2417443-2417462 None:intergenic 30.0%
!! AACTTTTTGAGAAGAGGAAT+TGG - Chr8:2415640-2415659 None:intergenic 30.0%
!! AATTTTGAAGAAGCGGATAA+GGG - Chr8:2420307-2420326 None:intergenic 30.0%
!! ACAAAGAATGGATTGGAATT+TGG - Chr8:2417445-2417464 None:intergenic 30.0%
!! ATTTTGCTATAATGTCCGTA+AGG + Chr8:2418779-2418798 MsG0880042009.01.T01:intron 30.0%
!! CAAAGAATGGATTGGAATTT+GGG - Chr8:2417444-2417463 None:intergenic 30.0%
!! CTTGTTATTGTTCCAATGTT+TGG + Chr8:2418071-2418090 MsG0880042009.01.T01:intron 30.0%
!! TAACACAACTTTTTGAGAAG+AGG - Chr8:2415646-2415665 None:intergenic 30.0%
!! TTGTAACTTTTTGTTTGTCG+CGG + Chr8:2415851-2415870 MsG0880042009.01.T01:intron 30.0%
!!! AATTGTTTTTCAGGTGGATT+TGG + Chr8:2421116-2421135 MsG0880042009.01.T01:intron 30.0%
!!! ATTGTTTTTCAGGTGGATTT+GGG + Chr8:2421117-2421136 MsG0880042009.01.T01:intron 30.0%
!!! CTGCTTTTTTCAATATTGCT+GGG + Chr8:2421361-2421380 MsG0880042009.01.T01:three_prime_UTR 30.0%
!!! GTGTTGTTAAACCCTTTTTT+AGG - Chr8:2417411-2417430 None:intergenic 30.0%
!!! TCTGCTTTTTTCAATATTGC+TGG + Chr8:2421360-2421379 MsG0880042009.01.T01:three_prime_UTR 30.0%
!!! TGTTATTTTGCAACTCTGTT+TGG + Chr8:2420328-2420347 MsG0880042009.01.T01:intron 30.0%
!!! TTGGTTATTTTTTGGATTGC+AGG + Chr8:2417820-2417839 MsG0880042009.01.T01:intron 30.0%
!!! TTTTTTGGTTACATGGTAGA+AGG - Chr8:2417296-2417315 None:intergenic 30.0%
AAAATCATACGAGCACTAAG+TGG + Chr8:2420176-2420195 MsG0880042009.01.T01:intron 35.0%
AAATGTGGAAGCCATGATAA+TGG - Chr8:2417495-2417514 None:intergenic 35.0%
AACAAGTTCATAACTTGGGA+AGG - Chr8:2420418-2420437 None:intergenic 35.0%
ACAAACAACAAACGATTCTC+TGG + Chr8:2415444-2415463 MsG0880042009.01.T01:intron 35.0%
ACCAACAGATTTGGGAATAT+TGG - Chr8:2419569-2419588 None:intergenic 35.0%
ACCAATATTCCCAAATCTGT+TGG + Chr8:2419565-2419584 MsG0880042009.01.T01:intron 35.0%
AGCTTCAACTTGAACTTCAA+TGG - Chr8:2415384-2415403 None:intergenic 35.0%
AGTGACGAAATGATACCTTT+AGG + Chr8:2421464-2421483 MsG0880042009.01.T01:three_prime_UTR 35.0%
ATATTCAATGTGGTCTATGG+CGG + Chr8:2419371-2419390 MsG0880042009.01.T01:intron 35.0%
ATGTCAAGATTGAAGACAAG+CGG - Chr8:2417365-2417384 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG - Chr8:2418528-2418547 None:intergenic 35.0%
CAATATGAACCTACAGATCA+AGG + Chr8:2416471-2416490 MsG0880042009.01.T01:intron 35.0%
CAATGAAAGTTTAGGTGTGT+TGG + Chr8:2419721-2419740 MsG0880042009.01.T01:CDS 35.0%
CCATAGACCACATTGAATAT+CGG - Chr8:2419371-2419390 None:intergenic 35.0%
CCTCAAAACATAACCTCTTT+CGG - Chr8:2416287-2416306 None:intergenic 35.0%
CTAGGATAAGTTCAAACTGT+AGG + Chr8:2418117-2418136 MsG0880042009.01.T01:intron 35.0%
CTCAAATTTAACAGCTGACT+TGG - Chr8:2418893-2418912 None:intergenic 35.0%
CTGAACAACAAAGAATGGAT+TGG - Chr8:2417452-2417471 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + Chr8:2418650-2418669 MsG0880042009.01.T01:intron 35.0%
CTTGTTTGAACCTTGTGATT+AGG - Chr8:2419266-2419285 None:intergenic 35.0%
GATAGCAAGATCTAACAACT+TGG + Chr8:2420205-2420224 MsG0880042009.01.T01:intron 35.0%
GCAGTCTTGAAATAATCACT+AGG + Chr8:2418099-2418118 MsG0880042009.01.T01:intron 35.0%
GCCAATTACAGAATACCTTA+CGG - Chr8:2418797-2418816 None:intergenic 35.0%
GGACCTGAAACAAATACAAA+AGG - Chr8:2419003-2419022 None:intergenic 35.0%
GTGAACTGAACAACAAAGAA+TGG - Chr8:2417457-2417476 None:intergenic 35.0%
GTTCAAAAGCTACAAACCAA+CGG + Chr8:2416544-2416563 MsG0880042009.01.T01:intron 35.0%
TAAAGTACACTGTAATACGG+CGG - Chr8:2415470-2415489 None:intergenic 35.0%
TAACCGTTATTTGACGTCAA+AGG - Chr8:2416021-2416040 None:intergenic 35.0%
TCACTTATTTGCATTCCATG+CGG + Chr8:2420636-2420655 MsG0880042009.01.T01:intron 35.0%
TCAGCAGTGTTGTCAAATAT+CGG - Chr8:2419537-2419556 None:intergenic 35.0%
TCCACAAGTTAAGAACTATG+TGG - Chr8:2420383-2420402 None:intergenic 35.0%
TCTAATCTAATCAGCCCAAA+AGG - Chr8:2419675-2419694 None:intergenic 35.0%
TCTCCTTTGACGTCAAATAA+CGG + Chr8:2416015-2416034 MsG0880042009.01.T01:intron 35.0%
TCTCGATAATAAGGGAACAT+CGG - Chr8:2418349-2418368 None:intergenic 35.0%
TGAAAGAGGTGAAGTAGAAA+AGG + Chr8:2419086-2419105 MsG0880042009.01.T01:intron 35.0%
TGATCACATTGTTGTATGGA+TGG + Chr8:2416056-2416075 MsG0880042009.01.T01:intron 35.0%
TGCTATTGTAAACTGGGAAT+TGG - Chr8:2419338-2419357 None:intergenic 35.0%
TTCTTTGTTGACATTCCTTG+GGG + Chr8:2421309-2421328 MsG0880042009.01.T01:three_prime_UTR 35.0%
TTTCTTAACATGTGCCCTAA+GGG - Chr8:2418527-2418546 None:intergenic 35.0%
TTTGAAGAGGAACTCTTTGA+AGG + Chr8:2417687-2417706 MsG0880042009.01.T01:CDS 35.0%
! AACTTGGAAGTCTCTTTTGT+TGG + Chr8:2420221-2420240 MsG0880042009.01.T01:intron 35.0%
! ACTTGGAAGTCTCTTTTGTT+GGG + Chr8:2420222-2420241 MsG0880042009.01.T01:intron 35.0%
! ACTTTTGTACGGATAGCTTT+AGG + Chr8:2415507-2415526 MsG0880042009.01.T01:intron 35.0%
! AGCTTTTACATTTTCAGCCT+CGG - Chr8:2419038-2419057 None:intergenic 35.0%
! AGGACACCCTAATTTTACAA+TGG + Chr8:2419213-2419232 MsG0880042009.01.T01:intron 35.0%
! CATGTAAGAAGGTATAGACT+AGG + Chr8:2418426-2418445 MsG0880042009.01.T01:intron 35.0%
! CTTGACATTTTGTGACTTTG+TGG + Chr8:2417377-2417396 MsG0880042009.01.T01:intron 35.0%
! GATTTGTTTGTAGGGATCAT+TGG + Chr8:2418150-2418169 MsG0880042009.01.T01:intron 35.0%
! GTATTTGAGCAAGTGCTATT+TGG + Chr8:2420974-2420993 MsG0880042009.01.T01:intron 35.0%
! TAAACTGGGAATTGGAGTTT+TGG - Chr8:2419330-2419349 None:intergenic 35.0%
! TAGTTGACTCAGATTCTGAA+AGG + Chr8:2419193-2419212 MsG0880042009.01.T01:intron 35.0%
! TCCACATAGTTCTTAACTTG+TGG + Chr8:2420379-2420398 MsG0880042009.01.T01:intron 35.0%
! TCCGTAAGGTATTCTGTAAT+TGG + Chr8:2418793-2418812 MsG0880042009.01.T01:intron 35.0%
! TGTTAGATCTTGCTATCACA+AGG - Chr8:2420202-2420221 None:intergenic 35.0%
! TTGTTTCAGGTCCTAAATGT+TGG + Chr8:2419010-2419029 MsG0880042009.01.T01:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - Chr8:2418667-2418686 None:intergenic 35.0%
!! AGGGTAGTTCTGATTCAAAA+TGG - Chr8:2417027-2417046 None:intergenic 35.0%
!! CAATTTTGAAGAAGCGGATA+AGG - Chr8:2420308-2420327 None:intergenic 35.0%
!! CGATAGTCATTTTGAGAAAG+AGG - Chr8:2415806-2415825 None:intergenic 35.0%
!! GTTGTTTTGTCAGTGAAAAC+AGG + Chr8:2418319-2418338 MsG0880042009.01.T01:intron 35.0%
!! TTTGTTGTTTGTTGCAGCAT+TGG - Chr8:2415429-2415448 None:intergenic 35.0%
!! TTTTGAGAAGAGGAATTGGT+GGG - Chr8:2415636-2415655 None:intergenic 35.0%
!! TTTTTGAGAAGAGGAATTGG+TGG - Chr8:2415637-2415656 None:intergenic 35.0%
!!! GGTATGTTTCAGTTTTGAAG+AGG + Chr8:2417674-2417693 MsG0880042009.01.T01:CDS 35.0%
!!! TGGTCTAATTGTTTTTCAGG+TGG + Chr8:2421110-2421129 MsG0880042009.01.T01:intron 35.0%
!!! TTGTTTTTCAGGTGGATTTG+GGG + Chr8:2421118-2421137 MsG0880042009.01.T01:intron 35.0%
!!! TTTTGAGGTTGATGATGTTG+TGG + Chr8:2416299-2416318 MsG0880042009.01.T01:intron 35.0%
!!! TTTTGAGGTTGTGGATATTG+TGG + Chr8:2416203-2416222 MsG0880042009.01.T01:intron 35.0%
AAACAAGTAACCATGAACCC+TGG + Chr8:2419279-2419298 MsG0880042009.01.T01:intron 40.0%
AACCTCAAAACGTAACATCC+AGG - Chr8:2416193-2416212 None:intergenic 40.0%
AATCTAATCAGCCCAAAAGG+TGG - Chr8:2419672-2419691 None:intergenic 40.0%
ACACAAATTCGTCTGCTGAA+GGG - Chr8:2420451-2420470 None:intergenic 40.0%
ACCTCAAAACGTAACATCCA+GGG - Chr8:2416192-2416211 None:intergenic 40.0%
ACGAAATGATACCTTTAGGC+TGG + Chr8:2421468-2421487 MsG0880042009.01.T01:three_prime_UTR 40.0%
ACTAAGCTGTATCACATTGG+TGG + Chr8:2418250-2418269 MsG0880042009.01.T01:intron 40.0%
AGACCTTTGGACTTAAACGT+TGG + Chr8:2419632-2419651 MsG0880042009.01.T01:intron 40.0%
AGGTATCATTTCGTCACTGA+AGG - Chr8:2421462-2421481 None:intergenic 40.0%
ATATCTGCTGAAATTGGGCA+TGG + Chr8:2419474-2419493 MsG0880042009.01.T01:intron 40.0%
ATCTAATCAGCCCAAAAGGT+GGG - Chr8:2419671-2419690 None:intergenic 40.0%
ATGCCCAATTTCAGCAGATA+TGG - Chr8:2419475-2419494 None:intergenic 40.0%
CAAAGGTCTTCTGTTTGAGA+GGG - Chr8:2419621-2419640 None:intergenic 40.0%
CAAGCTGATGACATTCAATG+AGG - Chr8:2418295-2418314 None:intergenic 40.0%
CACCGACATAAATGCTTATG+AGG + Chr8:2420842-2420861 MsG0880042009.01.T01:CDS 40.0%
CACTTATTTGCATTCCATGC+GGG + Chr8:2420637-2420656 MsG0880042009.01.T01:intron 40.0%
CCGATATTCAATGTGGTCTA+TGG + Chr8:2419368-2419387 MsG0880042009.01.T01:intron 40.0%
CTCATTGAATGTCATCAGCT+TGG + Chr8:2418293-2418312 MsG0880042009.01.T01:intron 40.0%
CTGCCATATCTGCTGAAATT+GGG + Chr8:2419469-2419488 MsG0880042009.01.T01:intron 40.0%
GAATTATACTTGGGAGTCTC+TGG - Chr8:2417574-2417593 None:intergenic 40.0%
GAGCTTCAACCAACAGATTT+GGG - Chr8:2419577-2419596 None:intergenic 40.0%
GAGGCTGAAAATGTAAAAGC+TGG + Chr8:2419037-2419056 MsG0880042009.01.T01:CDS 40.0%
GCAAAATCAAAAACTCCCCA+AGG - Chr8:2421327-2421346 None:intergenic 40.0%
GCTTCTAAACTTGTGCCTTA+AGG + Chr8:2418649-2418668 MsG0880042009.01.T01:intron 40.0%
GGCGAAGTGATTAAAGAGTT+AGG - Chr8:2415363-2415382 None:intergenic 40.0%
GTATGGATGGTAAAAAAGCG+TGG + Chr8:2416069-2416088 MsG0880042009.01.T01:intron 40.0%
GTTCGTGGATATACGTGATT+TGG + Chr8:2415556-2415575 MsG0880042009.01.T01:intron 40.0%
GTTGTCGCTGCAGTTATTTA+TGG - Chr8:2415236-2415255 None:intergenic 40.0%
GTTGTGGATATTGTGGAAGA+AGG + Chr8:2416210-2416229 MsG0880042009.01.T01:intron 40.0%
TAAGAAATGGGAACCCTCTA+AGG + Chr8:2417723-2417742 MsG0880042009.01.T01:CDS 40.0%
TAGGGTTCTTATTCGTCTTG+AGG + Chr8:2417859-2417878 MsG0880042009.01.T01:CDS 40.0%
TCAAACTGTAGGCTGAATGT+TGG + Chr8:2418128-2418147 MsG0880042009.01.T01:intron 40.0%
TCAAGAACATCCCAAGAAAG+TGG + Chr8:2416444-2416463 MsG0880042009.01.T01:intron 40.0%
TCGTGTTCTGATAGAGGAAA+TGG + Chr8:2416338-2416357 MsG0880042009.01.T01:intron 40.0%
TGACACGGTACAACATCAAA+CGG - Chr8:2418190-2418209 None:intergenic 40.0%
TGAGCTTCAACCAACAGATT+TGG - Chr8:2419578-2419597 None:intergenic 40.0%
TGTCAAGATTGAAGACAAGC+GGG - Chr8:2417364-2417383 None:intergenic 40.0%
TGTCCAACGTTTAAGTCCAA+AGG - Chr8:2419638-2419657 None:intergenic 40.0%
TGTTGGTATGGTGAGAAATG+TGG - Chr8:2417510-2417529 None:intergenic 40.0%
TTTGAGAAGAGGAATTGGTG+GGG - Chr8:2415635-2415654 None:intergenic 40.0%
! AGATATCAGTGGGGGTTTTT+GGG - Chr8:2419507-2419526 None:intergenic 40.0%
! CCGAAAGAGGTTATGTTTTG+AGG + Chr8:2416284-2416303 MsG0880042009.01.T01:intron 40.0%
! CTTGGAAGTCTCTTTTGTTG+GGG + Chr8:2420223-2420242 MsG0880042009.01.T01:intron 40.0%
! CTTTTCTCAAGAAAGCAGTG+TGG - Chr8:2421026-2421045 None:intergenic 40.0%
! TGTTGGTTGAAGCTCATAGA+TGG + Chr8:2419582-2419601 MsG0880042009.01.T01:intron 40.0%
!! ACTTTTTGTTTGTCGCGGAT+TGG + Chr8:2415856-2415875 MsG0880042009.01.T01:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG + Chr8:2418510-2418529 MsG0880042009.01.T01:intron 40.0%
!! CTTTTTGTTTGTCGCGGATT+GGG + Chr8:2415857-2415876 MsG0880042009.01.T01:intron 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG + Chr8:2418509-2418528 MsG0880042009.01.T01:intron 40.0%
!! TTGTACGGATAGCTTTAGGT+CGG + Chr8:2415511-2415530 MsG0880042009.01.T01:intron 40.0%
!!! ATACGTGCACCTCTTTTTTC+TGG - Chr8:2416572-2416591 None:intergenic 40.0%
!!! GATGTTACGTTTTGAGGTTG+TGG + Chr8:2416194-2416213 MsG0880042009.01.T01:intron 40.0%
!!! TTTTTTGGGCAGAAAACTGC+TGG + Chr8:2418853-2418872 MsG0880042009.01.T01:intron 40.0%
AAGGAAGGGAGTTGTTGGTA+TGG - Chr8:2417522-2417541 None:intergenic 45.0%
ACCAATAACTCCAGGGTTCA+TGG - Chr8:2419292-2419311 None:intergenic 45.0%
ACCATGAACCCTGGAGTTAT+TGG + Chr8:2419288-2419307 MsG0880042009.01.T01:intron 45.0%
AGACTGCAGACACCAAACAT+TGG - Chr8:2418086-2418105 None:intergenic 45.0%
AGATGGTCGTGTTCTGATAG+AGG + Chr8:2416332-2416351 MsG0880042009.01.T01:intron 45.0%
ATAAGAACCCTATCAGCCTG+AGG - Chr8:2417851-2417870 None:intergenic 45.0%
CCAAAGGTCTTCTGTTTGAG+AGG - Chr8:2419622-2419641 None:intergenic 45.0%
CCAATTTCAGCAGATATGGC+AGG - Chr8:2419471-2419490 None:intergenic 45.0%
CCTAAGCTGCTCATAACACA+CGG + Chr8:2419922-2419941 MsG0880042009.01.T01:intron 45.0%
CCTCAAAACGTAACATCCAG+GGG - Chr8:2416191-2416210 None:intergenic 45.0%
CCTCTCAAACAGAAGACCTT+TGG + Chr8:2419619-2419638 MsG0880042009.01.T01:intron 45.0%
CCTGCCATATCTGCTGAAAT+TGG + Chr8:2419468-2419487 MsG0880042009.01.T01:intron 45.0%
CTGCTCTTTGTCTCACAAAG+CGG - Chr8:2421208-2421227 None:intergenic 45.0%
GACACAAATTCGTCTGCTGA+AGG - Chr8:2420452-2420471 None:intergenic 45.0%
GACGCCGTCATTTCAGATTA+CGG + Chr8:2419437-2419456 MsG0880042009.01.T01:intron 45.0%
GCATTTGCTCCTTGATCTGT+AGG - Chr8:2416483-2416502 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - Chr8:2419531-2419550 None:intergenic 45.0%
GTTGTGGAAGGTCATTCAGA+TGG + Chr8:2416315-2416334 MsG0880042009.01.T01:intron 45.0%
TAAACGTTGGACAATGCCAC+TGG + Chr8:2419645-2419664 MsG0880042009.01.T01:intron 45.0%
TAATGAGGCAAACAATCCCC+TGG + Chr8:2416172-2416191 MsG0880042009.01.T01:intron 45.0%
TACACGTTCGTTGAGCCTTA+AGG - Chr8:2419777-2419796 None:intergenic 45.0%
TATACTTGGGAGTCTCTGGT+TGG - Chr8:2417570-2417589 None:intergenic 45.0%
TCTCAAGAAAGCAGTGTGGT+TGG - Chr8:2421022-2421041 None:intergenic 45.0%
TCTCTGGTTGGAGAAAGAAG+CGG - Chr8:2417558-2417577 None:intergenic 45.0%
TGATACCTTTAGGCTGGAGT+TGG + Chr8:2421474-2421493 MsG0880042009.01.T01:three_prime_UTR 45.0%
TTGTGAAGGAAGGGAGTTGT+TGG - Chr8:2417527-2417546 None:intergenic 45.0%
TTGTTGGGGTGAGGATTCAT+TGG + Chr8:2420237-2420256 MsG0880042009.01.T01:intron 45.0%
! AAGTCTCTTTTGTTGGGGTG+AGG + Chr8:2420228-2420247 MsG0880042009.01.T01:intron 45.0%
! CAGATATCAGTGGGGGTTTT+TGG - Chr8:2419508-2419527 None:intergenic 45.0%
! GTGGGGTTTTTGTGAAGGAA+GGG - Chr8:2417536-2417555 None:intergenic 45.0%
! TCCGCCGTAATCTGAAATGA+CGG - Chr8:2419444-2419463 None:intergenic 45.0%
!! GAGGTTGATGATGTTGTGGA+AGG + Chr8:2416303-2416322 MsG0880042009.01.T01:intron 45.0%
!! GGGGCTTGTTAGCAATCAAA+GGG - Chr8:2415616-2415635 None:intergenic 45.0%
!! GTTCGTTCTTTTGGCTGCAT+TGG - Chr8:2415322-2415341 None:intergenic 45.0%
!! TGGGGCTTGTTAGCAATCAA+AGG - Chr8:2415617-2415636 None:intergenic 45.0%
!! TGTACGGATAGCTTTAGGTC+GGG + Chr8:2415512-2415531 MsG0880042009.01.T01:intron 45.0%
!! ATATTAAAAAATAACAAATA+AGG + Chr8:2415745-2415764 MsG0880042009.01.T01:intron 5.0%
!! CATTAATAAATAATAAATAT+TGG + Chr8:2421090-2421109 MsG0880042009.01.T01:intron 5.0%
!! TAAAAATAAAAAACATAATA+CGG + Chr8:2417082-2417101 MsG0880042009.01.T01:intron 5.0%
!! TTATGATTATAATTTAAATA+TGG - Chr8:2420800-2420819 None:intergenic 5.0%
!!! AAAAAAAAAACTAATTTTTT+TGG - Chr8:2417913-2417932 None:intergenic 5.0%
!!! AAGATAATTTTAATTTTTTT+GGG - Chr8:2417182-2417201 None:intergenic 5.0%
!!! GATTTTTTTTAATTTTTTTT+AGG - Chr8:2417231-2417250 None:intergenic 5.0%
!!! GTTTTTTTTTTTTTTTAATT+TGG + Chr8:2417922-2417941 MsG0880042009.01.T01:intron 5.0%
!!! TAAGATAATTTTAATTTTTT+TGG - Chr8:2417183-2417202 None:intergenic 5.0%
!!! TTTTTTTTAATTTTTTTTAG+GGG - Chr8:2417229-2417248 None:intergenic 5.0%
AGTTTAGGTGTGTTGGGCTC+CGG + Chr8:2419728-2419747 MsG0880042009.01.T01:CDS 50.0%
ATAACTGCAGCGACAACCTC+AGG + Chr8:2415239-2415258 MsG0880042009.01.T01:intron 50.0%
CCAACGGCACCAGAAAAAAG+AGG + Chr8:2416560-2416579 MsG0880042009.01.T01:intron 50.0%
CCGTGTGTTATGAGCAGCTT+AGG - Chr8:2419925-2419944 None:intergenic 50.0%
CTCTAACCCCTATACTCCTG+AGG - Chr8:2415258-2415277 None:intergenic 50.0%
GCCGTCATTTCAGATTACGG+CGG + Chr8:2419440-2419459 MsG0880042009.01.T01:intron 50.0%
GCGATAACAGTCACCGAAAG+AGG + Chr8:2416271-2416290 MsG0880042009.01.T01:intron 50.0%
GGCTCAACGAACGTGTACAA+CGG + Chr8:2419780-2419799 MsG0880042009.01.T01:intron 50.0%
GGTTTCCAACTCCAGCCTAA+AGG - Chr8:2421482-2421501 None:intergenic 50.0%
GTGCTTCTTAGATCGTGGGT+GGG + Chr8:2415534-2415553 MsG0880042009.01.T01:intron 50.0%
TCGGGTGCTTCTTAGATCGT+GGG + Chr8:2415530-2415549 MsG0880042009.01.T01:intron 50.0%
TCTGCTGAAATTGGGCATGG+CGG + Chr8:2419477-2419496 MsG0880042009.01.T01:intron 50.0%
TGGTTGGAGAAAGAAGCGGT+GGG - Chr8:2417554-2417573 None:intergenic 50.0%
TTGTTGGCCGTCGTTGAGTA+GGG + Chr8:2421177-2421196 MsG0880042009.01.T01:CDS 50.0%
TTTGCATTCCATGCGGGTAG+TGG + Chr8:2420643-2420662 MsG0880042009.01.T01:intron 50.0%
TTTGGGCAGAAAACTGCTGG+TGG + Chr8:2418856-2418875 MsG0880042009.01.T01:intron 50.0%
! AAGCGGTGGGGTTTTTGTGA+AGG - Chr8:2417541-2417560 None:intergenic 50.0%
! AGCGACAACCTCAGGAGTAT+AGG + Chr8:2415247-2415266 MsG0880042009.01.T01:intron 50.0%
! CCCCTGGATGTTACGTTTTG+AGG + Chr8:2416188-2416207 MsG0880042009.01.T01:intron 50.0%
! CGACAACCTCAGGAGTATAG+GGG + Chr8:2415249-2415268 MsG0880042009.01.T01:intron 50.0%
! GCGACAACCTCAGGAGTATA+GGG + Chr8:2415248-2415267 MsG0880042009.01.T01:intron 50.0%
! GGTGGGGTTTTTGTGAAGGA+AGG - Chr8:2417537-2417556 None:intergenic 50.0%
!!! CCTCTTTTTTCTGGTGCCGT+TGG - Chr8:2416563-2416582 None:intergenic 50.0%
ACCCCCACTGATATCTGCCA+TGG + Chr8:2419511-2419530 MsG0880042009.01.T01:intron 55.0%
AGGTTGTGCCTCAGGCTGAT+AGG + Chr8:2417840-2417859 MsG0880042009.01.T01:intron 55.0%
ATGTGGTCTATGGCGGTCCA+TGG + Chr8:2419378-2419397 MsG0880042009.01.T01:intron 55.0%
CAGCCTCGGCACCAACATTT+AGG - Chr8:2419024-2419043 None:intergenic 55.0%
CGGCCATGGCAGATATCAGT+GGG - Chr8:2419517-2419536 None:intergenic 55.0%
CTGGTTGGAGAAAGAAGCGG+TGG - Chr8:2417555-2417574 None:intergenic 55.0%
CTTGTTGGCCGTCGTTGAGT+AGG + Chr8:2421176-2421195 MsG0880042009.01.T01:CDS 55.0%
GAAGACAAGCGGGTGTGAGA+AGG - Chr8:2417354-2417373 None:intergenic 55.0%
GACCAAAGAGTCCTCACGCT+GGG + Chr8:2419818-2419837 MsG0880042009.01.T01:intron 55.0%
GCCATGGCAGATATCAGTGG+GGG - Chr8:2419515-2419534 None:intergenic 55.0%
GCTGCAGTTCCACATTTCCG+CGG + Chr8:2415401-2415420 MsG0880042009.01.T01:intron 55.0%
GGCCAAACCCTACTCAACGA+CGG - Chr8:2421187-2421206 None:intergenic 55.0%
GGCCATGGCAGATATCAGTG+GGG - Chr8:2419516-2419535 None:intergenic 55.0%
GGTGCTTCTTAGATCGTGGG+TGG + Chr8:2415533-2415552 MsG0880042009.01.T01:intron 55.0%
GGTTGGAGAAAGAAGCGGTG+GGG - Chr8:2417553-2417572 None:intergenic 55.0%
GGTTGTGCCTCAGGCTGATA+GGG + Chr8:2417841-2417860 MsG0880042009.01.T01:intron 55.0%
GTCGGGTGCTTCTTAGATCG+TGG + Chr8:2415529-2415548 MsG0880042009.01.T01:intron 55.0%
TCGGCCATGGCAGATATCAG+TGG - Chr8:2419518-2419537 None:intergenic 55.0%
TGACCAAAGAGTCCTCACGC+TGG + Chr8:2419817-2419836 MsG0880042009.01.T01:intron 55.0%
TGGATTGCAGGTTGTGCCTC+AGG + Chr8:2417832-2417851 MsG0880042009.01.T01:intron 55.0%
! AATGCCACTGGCCCACCTTT+TGG + Chr8:2419657-2419676 MsG0880042009.01.T01:intron 55.0%
! ATGCCACTGGCCCACCTTTT+GGG + Chr8:2419658-2419677 MsG0880042009.01.T01:intron 55.0%
! TTAGATCGTGGGTGGGTTCG+TGG + Chr8:2415541-2415560 MsG0880042009.01.T01:intron 55.0%
!! GGTCCTAAATGTTGGTGCCG+AGG + Chr8:2419018-2419037 MsG0880042009.01.T01:intron 55.0%
AAGAGTCCTCACGCTGGGAG+CGG + Chr8:2419823-2419842 MsG0880042009.01.T01:intron 60.0%
ACAAAGCGACCGGCATGGCA+GGG - Chr8:2419417-2419436 None:intergenic 60.0%
CAGGGTCAAGGCAGGCCTTA+AGG + Chr8:2419759-2419778 MsG0880042009.01.T01:CDS 60.0%
CTCCCAGCGTGAGGACTCTT+TGG - Chr8:2419823-2419842 None:intergenic 60.0%
CTTAAGGCCTGCCTTGACCC+TGG - Chr8:2419761-2419780 None:intergenic 60.0%
GGCCGTCGTTGAGTAGGGTT+TGG + Chr8:2421182-2421201 MsG0880042009.01.T01:exon 60.0%
TATATCCCGCTCCCAGCGTG+AGG - Chr8:2419832-2419851 None:intergenic 60.0%
TGACGGCGTCACAAAGCGAC+CGG - Chr8:2419427-2419446 None:intergenic 60.0%
TTAGGTGTGTTGGGCTCCGG+AGG + Chr8:2419731-2419750 MsG0880042009.01.T01:CDS 60.0%
! ATGCGGGTAGTGGTGTGCAG+GGG + Chr8:2420653-2420672 MsG0880042009.01.T01:intron 60.0%
! CATGCGGGTAGTGGTGTGCA+GGG + Chr8:2420652-2420671 MsG0880042009.01.T01:intron 60.0%
! CATGGCAGGGTCTTGGCTCT+CGG - Chr8:2419404-2419423 None:intergenic 60.0%
!! TTGTTGCAGCATTGGCGCCG+CGG - Chr8:2415421-2415440 None:intergenic 60.0%
AGAGTCCTCACGCTGGGAGC+GGG + Chr8:2419824-2419843 MsG0880042009.01.T01:intron 65.0%
AGGCTCACCAGGGTCAAGGC+AGG + Chr8:2419751-2419770 MsG0880042009.01.T01:CDS 65.0%
CACAAAGCGACCGGCATGGC+AGG - Chr8:2419418-2419437 None:intergenic 65.0%
CAGCCCAAAAGGTGGGCCAG+TGG - Chr8:2419664-2419683 None:intergenic 65.0%
CCTGCACACCACTACCCGCA+TGG - Chr8:2420654-2420673 None:intergenic 65.0%
CCTTGACCCTGGTGAGCCTC+CGG - Chr8:2419750-2419769 None:intergenic 65.0%
GAGCCAAGACCCTGCCATGC+CGG + Chr8:2419405-2419424 MsG0880042009.01.T01:intron 65.0%
GCGTCACAAAGCGACCGGCA+TGG - Chr8:2419422-2419441 None:intergenic 65.0%
! AGGGTCTTGGCTCTCGGCCA+TGG - Chr8:2419398-2419417 None:intergenic 65.0%
! CCATGCGGGTAGTGGTGTGC+AGG + Chr8:2420651-2420670 MsG0880042009.01.T01:intron 65.0%
! GCATTGGCGCCGCGGAAATG+TGG - Chr8:2415413-2415432 None:intergenic 65.0%
CCGGAGGCTCACCAGGGTCA+AGG + Chr8:2419747-2419766 MsG0880042009.01.T01:CDS 70.0%
CGACCGGCATGGCAGGGTCT+TGG - Chr8:2419411-2419430 None:intergenic 70.0%
TGGGCTCCGGAGGCTCACCA+GGG + Chr8:2419741-2419760 MsG0880042009.01.T01:CDS 70.0%
TTGGGCTCCGGAGGCTCACC+AGG + Chr8:2419740-2419759 MsG0880042009.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 2415067 2421550 2415067 ID=MsG0880042009.01;Name=MsG0880042009.01
Chr8 mRNA 2415067 2421550 2415067 ID=MsG0880042009.01.T01;Parent=MsG0880042009.01;Name=MsG0880042009.01.T01;_AED=0.40;_eAED=0.61;_QI=0|0.57|0.5|1|0.42|0.25|8|353|258
Chr8 exon 2415067 2415174 2415067 ID=MsG0880042009.01.T01:exon:1813;Parent=MsG0880042009.01.T01
Chr8 exon 2417472 2417744 2417472 ID=MsG0880042009.01.T01:exon:1814;Parent=MsG0880042009.01.T01
Chr8 exon 2417842 2417892 2417842 ID=MsG0880042009.01.T01:exon:1815;Parent=MsG0880042009.01.T01
Chr8 exon 2418865 2418930 2418865 ID=MsG0880042009.01.T01:exon:1816;Parent=MsG0880042009.01.T01
Chr8 exon 2419019 2419093 2419019 ID=MsG0880042009.01.T01:exon:1817;Parent=MsG0880042009.01.T01
Chr8 exon 2419689 2419793 2419689 ID=MsG0880042009.01.T01:exon:1818;Parent=MsG0880042009.01.T01
Chr8 exon 2420834 2420863 2420834 ID=MsG0880042009.01.T01:exon:1819;Parent=MsG0880042009.01.T01
Chr8 exon 2421129 2421550 2421129 ID=MsG0880042009.01.T01:exon:1820;Parent=MsG0880042009.01.T01
Chr8 CDS 2415067 2415174 2415067 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2417472 2417744 2417472 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2417842 2417892 2417842 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2418865 2418930 2418865 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2419019 2419093 2419019 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2419689 2419793 2419689 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2420834 2420863 2420834 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 CDS 2421129 2421197 2421129 ID=MsG0880042009.01.T01:cds;Parent=MsG0880042009.01.T01
Chr8 three_prime_UTR 2421198 2421550 2421198 ID=MsG0880042009.01.T01:three_prime_utr;Parent=MsG0880042009.01.T01
Gene Sequence

>MsG0880042009.01.T01

ATGAGCCATAAGACCAAATTGAATATAGAAATGTTTGGTGAAATGATTGTCAATGCTGCGAAAGAAACAGCACATGCAATTCCGTATATGAATGAGATTGGAAATAAGTTCACTCTTTTATCTCTTATCCATTATCATGGCTTCCACATTTCTCACCATACCAACAACTCCCTTCCTTCACAAAAACCCCACCGCTTCTTTCTCCAACCAGAGACTCCCAAGTATAATTCTTCTTCTACTCATCAAAAAATTCAGTTTTTTGTTGACCCTTTTATTCATTTTAACGAAGTATTAACTTTTTTTTCATTTGGGTATGTTTCAGTTTTGAAGAGGAACTCTTTGAAGGTTAATGCAATTGCTAAGAAATGGGAACCCTCTAAGGTTGTGCCTCAGGCTGATAGGGTTCTTATTCGTCTTGAGGAGTTATCAGACAAAACTGCTGGTGGAATTTTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAGTCCTAAATGTTGGTGCCGAGGCTGAAAATGTAAAAGCTGGCTCGAAGGTATGTTGTTTATTTACTATGAAAGAGATTAGAGTCAACTTATTGACTACTACTTTTAGCAATGAAAGTTTAGGTGTGTTGGGCTCCGGAGGCTCACCAGGGTCAAGGCAGGCCTTAAGGCTCAACGAACGTGTACTATTCACCGACATAAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCATTAAATCAAGTGACTTGTTGGCCGTCGTTGAGTAG

Protein sequence

>MsG0880042009.01.T01

MSHKTKLNIEMFGEMIVNAAKETAHAIPYMNEIGNKFTLLSLIHYHGFHISHHTNNSLPSQKPHRFFLQPETPKYNSSSTHQKIQFFVDPFIHFNEVLTFFSFGYVSVLKRNSLKVNAIAKKWEPSKVVPQADRVLIRLEELSDKTAGGILLPKSAVKFERYLVGEVLNVGAEAENVKAGSKVCCLFTMKEIRVNLLTTTFSNESLGVLGSGGSPGSRQALRLNERVLFTDINAYEVDLGTDAKHCFIKSSDLLAVVE*