AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022837.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022837.01.T01 MTR_4g094785 95.169 207 5 2 1 202 34 240 5.51e-141 393
MsG0480022837.01.T01 MTR_8g091410 53.077 130 56 2 74 199 76 204 2.55e-40 137
MsG0480022837.01.T01 MTR_8g012380 49.485 97 42 2 103 199 46 135 1.01e-23 92.4
MsG0480022837.01.T01 MTR_5g008680 42.857 126 60 5 77 199 381 497 4.43e-21 90.5
MsG0480022837.01.T01 MTR_8g080980 43.617 94 46 2 107 200 56 142 5.49e-17 79.0
MsG0480022837.01.T01 MTR_7g053470 42.553 94 47 2 107 200 52 138 1.10e-16 77.8
MsG0480022837.01.T01 MTR_8g012340 43.617 94 46 2 107 200 58 144 2.02e-16 77.4
MsG0480022837.01.T01 MTR_1g061850 39.370 127 60 5 82 200 125 242 2.71e-16 75.1
MsG0480022837.01.T01 MTR_4g068190 37.097 124 67 3 78 198 103 218 7.36e-15 70.9
MsG0480022837.01.T01 MTR_2g009390 35.849 106 58 3 99 200 11 110 1.47e-12 62.0
MsG0480022837.01.T01 MTR_5g080300 36.559 93 51 3 109 200 34 119 1.67e-12 63.5
MsG0480022837.01.T01 MTR_4g032680 42.574 101 47 5 101 199 776 867 3.29e-12 65.1
MsG0480022837.01.T01 MTR_4g032680 42.574 101 47 5 101 199 776 867 3.29e-12 65.1
MsG0480022837.01.T01 MTR_4g032680 42.574 101 47 5 101 199 667 758 4.18e-12 64.7
MsG0480022837.01.T01 MTR_4g032680 42.574 101 47 5 101 199 567 658 4.67e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022837.01.T01 AT5G45680 57.870 216 69 6 1 202 1 208 7.07e-79 234
MsG0480022837.01.T01 AT4G39710 45.062 162 76 4 50 199 48 208 1.88e-40 137
MsG0480022837.01.T01 AT4G39710 45.062 162 76 4 50 199 48 208 1.88e-40 137
MsG0480022837.01.T01 AT4G39710 55.696 79 35 0 82 160 87 165 1.28e-27 103
MsG0480022837.01.T01 AT5G48580 48.980 98 43 2 103 200 48 138 4.33e-24 93.6
MsG0480022837.01.T01 AT5G05420 49.505 101 41 4 101 200 50 141 8.11e-24 92.4
MsG0480022837.01.T01 AT3G25220 48.980 98 43 2 103 200 48 138 2.75e-23 91.3
MsG0480022837.01.T01 AT4G25340 39.850 133 69 5 71 200 351 475 1.79e-22 94.4
MsG0480022837.01.T01 AT5G48570 36.429 140 68 6 71 200 23 151 1.96e-17 80.1
MsG0480022837.01.T01 AT2G43560 39.370 127 64 4 78 199 97 215 1.59e-16 75.1
MsG0480022837.01.T01 AT2G43560 39.370 127 64 4 78 199 41 159 2.29e-16 73.6
MsG0480022837.01.T01 AT3G10060 38.095 126 61 5 83 200 99 215 1.33e-15 72.8
MsG0480022837.01.T01 AT3G25230 40.426 94 49 2 107 200 57 143 7.47e-15 72.8
MsG0480022837.01.T01 AT3G25230 40.426 94 49 2 107 200 57 143 1.05e-14 72.4
MsG0480022837.01.T01 AT3G60370 38.202 89 49 1 87 175 118 200 1.09e-11 62.4
MsG0480022837.01.T01 AT3G60370 38.202 89 49 1 87 175 147 229 1.46e-11 62.4
MsG0480022837.01.T01 AT5G64350 34.906 106 59 3 99 200 11 110 1.58e-11 59.3

Find 73 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAACTTGTAAATTAAA+AGG 0.154515 4:-77345971 None:intergenic
TTGAAGCTTCCTCCAGAATT+TGG 0.175545 4:+77344859 MsG0480022837.01.T01:CDS
ATAGGCCTCTCCTTGAGTTT+TGG 0.272868 4:+77343851 MsG0480022837.01.T01:CDS
TCTTATTGTGATAAAATTGT+AGG 0.291291 4:+77343965 MsG0480022837.01.T01:CDS
CCTTGAATTTCCTTGGAGAT+TGG 0.296112 4:+77345924 MsG0480022837.01.T01:three_prime_UTR
AACTCATTTCCACTGAATTC+AGG 0.301778 4:-77343676 None:intergenic
GCTCTAGATCACATTGATAA+AGG 0.301927 4:+77346032 MsG0480022837.01.T01:three_prime_UTR
CTATGGTCCTCAGGCTGTTA+AGG 0.309962 4:+77343988 MsG0480022837.01.T01:CDS
CTTGAGCCATATCCAAATTC+TGG 0.313714 4:-77344871 None:intergenic
TGTTAAGGGACAACTTATTA+AGG 0.315282 4:+77344003 MsG0480022837.01.T01:CDS
GGAATTCCTCCTATGCTTAC+AGG 0.339705 4:+77344739 MsG0480022837.01.T01:CDS
CTTCCTCCAGAATTTGGATA+TGG 0.340666 4:+77344865 MsG0480022837.01.T01:CDS
TTTCCACTGAATTCAGGATA+TGG 0.346588 4:-77343670 None:intergenic
GCTGTTGCAGTAGGTATTAT+TGG 0.348854 4:-77343896 None:intergenic
AGGCAAGTCCCAACTGAATA+TGG 0.354350 4:-77343707 None:intergenic
AGAACATGTTGTTAGTGAAT+TGG 0.362479 4:-77343762 None:intergenic
GGCACATTATGTGGGGAGAT+TGG 0.379326 4:+77344277 MsG0480022837.01.T01:intron
TTACCTTCCTTGAATTTCCT+TGG 0.390463 4:+77345917 MsG0480022837.01.T01:three_prime_UTR
ATCAAACTTGTAAATTAAAA+GGG 0.396485 4:-77345970 None:intergenic
GAATTAACTGTAGCTCCTTC+AGG 0.411871 4:+77343938 MsG0480022837.01.T01:CDS
TCGAATAAGAGTACCGCATC+GGG 0.420967 4:-77345846 None:intergenic
CTGGTGGTTGTTGTTGGACT+TGG 0.423685 4:-77343787 None:intergenic
TTAATGTTAGGCACATTATG+TGG 0.439371 4:+77344268 MsG0480022837.01.T01:intron
ACCACCAGTTCTTGTACAAA+AGG 0.466640 4:+77343802 MsG0480022837.01.T01:CDS
TGTGATAAAATTGTAGGCTA+TGG 0.467135 4:+77343971 MsG0480022837.01.T01:CDS
CAAGAACTGGTGGTTGTTGT+TGG 0.468643 4:-77343793 None:intergenic
CTGAAAAGAAGAGAAGCAAT+AGG 0.473925 4:+77343833 MsG0480022837.01.T01:CDS
TATGGTCCTCAGGCTGTTAA+GGG 0.475010 4:+77343989 MsG0480022837.01.T01:CDS
CCAATCTCCAAGGAAATTCA+AGG 0.485040 4:-77345924 None:intergenic
CACTAGCACCATATTCAGTT+GGG 0.486666 4:+77343699 MsG0480022837.01.T01:CDS
AATTGTAGGCTATGGTCCTC+AGG 0.493523 4:+77343979 MsG0480022837.01.T01:CDS
CTTACATTTCGTGTTGGTGT+TGG 0.498679 4:+77344344 MsG0480022837.01.T01:CDS
GGGGAAAATAATAGTAATCT+CGG 0.499779 4:-77345949 None:intergenic
TCACTAGCACCATATTCAGT+TGG 0.504892 4:+77343698 MsG0480022837.01.T01:CDS
GGATATGGCTCAAGAGGAGC+TGG 0.513862 4:+77344880 MsG0480022837.01.T01:CDS
TCATATAGGTTATCAAAGGA+TGG 0.519848 4:+77344692 MsG0480022837.01.T01:intron
GTTATCAAAGGATGGGATGT+AGG 0.520177 4:+77344700 MsG0480022837.01.T01:CDS
TCAAACTTGTAAATTAAAAG+GGG 0.520191 4:-77345969 None:intergenic
CAGGTACCTGTAAGCATAGG+AGG 0.528701 4:-77344745 None:intergenic
CTGAATTCAGGATATGGCCA+TGG 0.535653 4:-77343664 None:intergenic
TAATGTTAGGCACATTATGT+GGG 0.541025 4:+77344269 MsG0480022837.01.T01:intron
GGAAGGTAATTTGACTGCCA+TGG 0.544498 4:-77345903 None:intergenic
ACACCAACACGAAATGTAAG+TGG 0.551590 4:-77344341 None:intergenic
TGAATTCAGGATATGGCCAT+GGG 0.557547 4:-77343663 None:intergenic
GCTTCAGCTGCTGTTGCAGT+AGG 0.562444 4:-77343905 None:intergenic
GAATTTGGATATGGCTCAAG+AGG 0.566038 4:+77344874 MsG0480022837.01.T01:CDS
ATTTCGTGTTGGTGTTGGAG+AGG 0.570960 4:+77344349 MsG0480022837.01.T01:CDS
TTTGGGGCTGCAAGGAGGTG+AGG 0.573241 4:-77343727 None:intergenic
AAGCCACTTACATTTCGTGT+TGG 0.577359 4:+77344338 MsG0480022837.01.T01:CDS
CATATAGGTTATCAAAGGAT+GGG 0.577493 4:+77344693 MsG0480022837.01.T01:intron
TATGTGGGGAGATTGGAGAA+TGG 0.578143 4:+77344284 MsG0480022837.01.T01:CDS
ATGTTGTTAGTGAATTGGAA+TGG 0.592486 4:-77343757 None:intergenic
TCACAATAAGAAAGGCCTGA+AGG 0.595988 4:-77343953 None:intergenic
TGAATCATATAGGTTATCAA+AGG 0.598952 4:+77344688 MsG0480022837.01.T01:intron
AGTATCATCAACTTCCACAT+TGG 0.600616 4:+77346096 MsG0480022837.01.T01:three_prime_UTR
AAACAGGTACCTGTAAGCAT+AGG 0.604775 4:-77344748 None:intergenic
GTCGAATAAGAGTACCGCAT+CGG 0.605120 4:-77345847 None:intergenic
AAGCATGATTTACAACTCCA+TGG 0.608035 4:+77345886 MsG0480022837.01.T01:exon
AATAAGAGTACCGCATCGGG+AGG 0.612454 4:-77345843 None:intergenic
ATGTAGAAGACCAAAACTCA+AGG 0.618115 4:-77343861 None:intergenic
TGGCCATATCCTGAATTCAG+TGG 0.622610 4:+77343667 MsG0480022837.01.T01:five_prime_UTR
TTCGACAGCAGCTACAATCG+TGG 0.627562 4:+77344314 MsG0480022837.01.T01:CDS
TCTCCAAGGAAATTCAAGGA+AGG 0.641691 4:-77345920 None:intergenic
AATGTTAGGCACATTATGTG+GGG 0.643650 4:+77344270 MsG0480022837.01.T01:intron
GGAGCTACAGTTAATTCACA+TGG 0.644123 4:-77343932 None:intergenic
GAGCCATATCCAAATTCTGG+AGG 0.647151 4:-77344868 None:intergenic
AATAATCAAGTCATCCAATG+TGG 0.649424 4:-77346110 None:intergenic
GAAGACCAAAACTCAAGGAG+AGG 0.650327 4:-77343856 None:intergenic
ATGTGTCATTCCTCCCGATG+CGG 0.653625 4:+77345833 MsG0480022837.01.T01:CDS
AGTTGTCCCTTAACAGCCTG+AGG 0.654589 4:-77343995 None:intergenic
AATCTCGGCTCCAATCTCCA+AGG 0.671361 4:-77345934 None:intergenic
CAAACTTGTAAATTAAAAGG+GGG 0.675261 4:-77345968 None:intergenic
GAATTCAGGATATGGCCATG+GGG 0.748796 4:-77343662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATGATAAAAGTAAAA+TGG + Chr4:77344081-77344100 MsG0480022837.01.T01:intron 10.0%
!! ATATTATTCATGAATCATAT+AGG + Chr4:77344678-77344697 MsG0480022837.01.T01:intron 15.0%
!! ATCAAACTTGTAAATTAAAA+GGG - Chr4:77345973-77345992 None:intergenic 15.0%
!! TATAATGATAGCATATTAAA+AGG - Chr4:77344947-77344966 None:intergenic 15.0%
!! TATCAAATTTGATCTTTATA+TGG - Chr4:77344980-77344999 None:intergenic 15.0%
!!! AGGAAAATGAATAATTTTTA+GGG + Chr4:77345244-77345263 MsG0480022837.01.T01:intron 15.0%
!!! GTAAATTCTATTTTGTTTTA+TGG + Chr4:77344782-77344801 MsG0480022837.01.T01:intron 15.0%
!! CATCAAACTTGTAAATTAAA+AGG - Chr4:77345974-77345993 None:intergenic 20.0%
!! CTTGATTATAATAGAGAAAT+TGG + Chr4:77345378-77345397 MsG0480022837.01.T01:intron 20.0%
!! GTTAATAAACCAAAAAGTAA+AGG + Chr4:77344558-77344577 MsG0480022837.01.T01:intron 20.0%
!! TATAATGGTCAAATTAAACA+CGG - Chr4:77344248-77344267 None:intergenic 20.0%
!! TCAAACTTGTAAATTAAAAG+GGG - Chr4:77345972-77345991 None:intergenic 20.0%
!! TCTTATTGTGATAAAATTGT+AGG + Chr4:77343965-77343984 MsG0480022837.01.T01:CDS 20.0%
!! TTGACCATTATATTAATGTT+AGG + Chr4:77344256-77344275 MsG0480022837.01.T01:intron 20.0%
!!! AAGATCAAATTTGATAACTT+TGG + Chr4:77344984-77345003 MsG0480022837.01.T01:intron 20.0%
!!! AATATACAAAACTTGATGAT+AGG + Chr4:77345131-77345150 MsG0480022837.01.T01:intron 20.0%
!!! ATATACAAAACTTGATGATA+GGG + Chr4:77345132-77345151 MsG0480022837.01.T01:intron 20.0%
!!! ATTTTTTATTCTATGTTAGG+AGG + Chr4:77344826-77344845 MsG0480022837.01.T01:intron 20.0%
!!! CAATTTTATCACAATAAGAA+AGG - Chr4:77343964-77343983 None:intergenic 20.0%
!!! CTATTTTTTGAAATAATTGC+CGG + Chr4:77345663-77345682 MsG0480022837.01.T01:intron 20.0%
!!! CTTTTAATTTACAAGTTTGA+TGG + Chr4:77345972-77345991 MsG0480022837.01.T01:three_prime_UTR 20.0%
!!! GACATTTTTTATTCTATGTT+AGG + Chr4:77344823-77344842 MsG0480022837.01.T01:intron 20.0%
!!! GAGGAAAATGAATAATTTTT+AGG + Chr4:77345243-77345262 MsG0480022837.01.T01:intron 20.0%
! AAAATTGGAAGTTCATTATG+AGG + Chr4:77345224-77345243 MsG0480022837.01.T01:intron 25.0%
! ACTAACTAACTTCATTTCAT+CGG - Chr4:77344145-77344164 None:intergenic 25.0%
! ATAATGGTCAAATTAAACAC+GGG - Chr4:77344247-77344266 None:intergenic 25.0%
! CAAACTTGTAAATTAAAAGG+GGG - Chr4:77345971-77345990 None:intergenic 25.0%
! GAAAAATTGATGCAGAAATA+AGG - Chr4:77345773-77345792 None:intergenic 25.0%
! GTGTTGTGTCAATAATTTAT+AGG + Chr4:77345712-77345731 MsG0480022837.01.T01:intron 25.0%
! TGAATCATATAGGTTATCAA+AGG + Chr4:77344688-77344707 MsG0480022837.01.T01:intron 25.0%
! TGGATTAAGTTCTTAAAGAA+AGG + Chr4:77345407-77345426 MsG0480022837.01.T01:intron 25.0%
! TGTAACAAGTAACAACTTAT+AGG - Chr4:77344630-77344649 None:intergenic 25.0%
! TGTGCCTAACATTAATATAA+TGG - Chr4:77344263-77344282 None:intergenic 25.0%
! TTCATGAATAATATTGAGCA+TGG - Chr4:77344672-77344691 None:intergenic 25.0%
!! AATTGGAATGGTTAAGTTTT+TGG - Chr4:77343748-77343767 None:intergenic 25.0%
!! ATTGGAATGGTTAAGTTTTT+GGG - Chr4:77343747-77343766 None:intergenic 25.0%
!! CCTTAAAATCTTTTATATCG+CGG + Chr4:77344488-77344507 MsG0480022837.01.T01:intron 25.0%
!! TATAACTGACTTTGTATAGA+AGG + Chr4:77344056-77344075 MsG0480022837.01.T01:intron 25.0%
!! TTCTTTAAGAACTTAATCCA+AGG - Chr4:77345407-77345426 None:intergenic 25.0%
AACCAGGTATAAATTCACAT+TGG - Chr4:77345800-77345819 None:intergenic 30.0%
AATAATCAAGTCATCCAATG+TGG - Chr4:77346113-77346132 None:intergenic 30.0%
AATACTTAACAAGTACATCC+AGG - Chr4:77345339-77345358 None:intergenic 30.0%
AATAGAGAAATTGGAATCCT+TGG + Chr4:77345387-77345406 MsG0480022837.01.T01:intron 30.0%
AGAACATGTTGTTAGTGAAT+TGG - Chr4:77343765-77343784 None:intergenic 30.0%
AGGTATCATAATTCTATCCA+TGG + Chr4:77344369-77344388 MsG0480022837.01.T01:intron 30.0%
ATGACATATCTCTTTAAACC+TGG + Chr4:77345318-77345337 MsG0480022837.01.T01:intron 30.0%
ATGTTGTTAGTGAATTGGAA+TGG - Chr4:77343760-77343779 None:intergenic 30.0%
CAAAAATGTAAATTCACAGC+TGG - Chr4:77346013-77346032 None:intergenic 30.0%
CATATAGGTTATCAAAGGAT+GGG + Chr4:77344693-77344712 MsG0480022837.01.T01:intron 30.0%
CTCACGTTCTTTATGATTAA+AGG - Chr4:77345473-77345492 None:intergenic 30.0%
CTGTTAACTGCAGTAAAAAA+TGG - Chr4:77344530-77344549 None:intergenic 30.0%
GGCAGAATAAGAAAGAAAAT+TGG + Chr4:77345209-77345228 MsG0480022837.01.T01:intron 30.0%
GGGGAAAATAATAGTAATCT+CGG - Chr4:77345952-77345971 None:intergenic 30.0%
GTGACAACAAATGACAAAAA+TGG - Chr4:77344032-77344051 None:intergenic 30.0%
TAATGTTAGGCACATTATGT+GGG + Chr4:77344269-77344288 MsG0480022837.01.T01:intron 30.0%
TCATATAGGTTATCAAAGGA+TGG + Chr4:77344692-77344711 MsG0480022837.01.T01:intron 30.0%
TGTGATAAAATTGTAGGCTA+TGG + Chr4:77343971-77343990 MsG0480022837.01.T01:CDS 30.0%
TGTTAAGGGACAACTTATTA+AGG + Chr4:77344003-77344022 MsG0480022837.01.T01:CDS 30.0%
TTAATGTTAGGCACATTATG+TGG + Chr4:77344268-77344287 MsG0480022837.01.T01:intron 30.0%
TTGAATGTAATCATGTGTGT+AGG - Chr4:77345638-77345657 None:intergenic 30.0%
TTGTTGAAGTGGTTCTTATA+AGG + Chr4:77345019-77345038 MsG0480022837.01.T01:intron 30.0%
TTTACAGTGACTGAAAAAAC+AGG - Chr4:77344767-77344786 None:intergenic 30.0%
! CCGCGATATAAAAGATTTTA+AGG - Chr4:77344491-77344510 None:intergenic 30.0%
! GTAACGACAATTTAAAACCA+TGG - Chr4:77344389-77344408 None:intergenic 30.0%
! TATTTTGCACTTTGTTGAAG+TGG + Chr4:77345008-77345027 MsG0480022837.01.T01:intron 30.0%
! TTGGAATGGTTAAGTTTTTG+GGG - Chr4:77343746-77343765 None:intergenic 30.0%
!! AGAACTGATTAAATTTGCTG+TGG + Chr4:77345163-77345182 MsG0480022837.01.T01:intron 30.0%
!! ATTAAATTTGCTGTGGCATA+AGG + Chr4:77345170-77345189 MsG0480022837.01.T01:intron 30.0%
!! CTCATAAGACCTTTACTTTT+TGG - Chr4:77344570-77344589 None:intergenic 30.0%
AACTCATTTCCACTGAATTC+AGG - Chr4:77343679-77343698 None:intergenic 35.0%
AAGCATGATTTACAACTCCA+TGG + Chr4:77345886-77345905 MsG0480022837.01.T01:exon 35.0%
AAGGCAATGTATAACTCTTC+AGG - Chr4:77345754-77345773 None:intergenic 35.0%
AATGTTAGGCACATTATGTG+GGG + Chr4:77344270-77344289 MsG0480022837.01.T01:intron 35.0%
AGCCAATGTGAATTTATACC+TGG + Chr4:77345795-77345814 MsG0480022837.01.T01:intron 35.0%
AGGATGAAGTAATGGTTACT+TGG + Chr4:77345087-77345106 MsG0480022837.01.T01:intron 35.0%
AGTATCATCAACTTCCACAT+TGG + Chr4:77346096-77346115 MsG0480022837.01.T01:three_prime_UTR 35.0%
ATGTAGAAGACCAAAACTCA+AGG - Chr4:77343864-77343883 None:intergenic 35.0%
CAAATTAAACACGGGACAAA+GGG - Chr4:77344239-77344258 None:intergenic 35.0%
CTGAAAAGAAGAGAAGCAAT+AGG + Chr4:77343833-77343852 MsG0480022837.01.T01:CDS 35.0%
GGTTCTTATAAGGATCATGT+TGG + Chr4:77345029-77345048 MsG0480022837.01.T01:intron 35.0%
TCAAATTAAACACGGGACAA+AGG - Chr4:77344240-77344259 None:intergenic 35.0%
TTACCTTCCTTGAATTTCCT+TGG + Chr4:77345917-77345936 MsG0480022837.01.T01:three_prime_UTR 35.0%
TTTCCACTGAATTCAGGATA+TGG - Chr4:77343673-77343692 None:intergenic 35.0%
! AGGTCTTATGAGATGTTGAT+TGG + Chr4:77344578-77344597 MsG0480022837.01.T01:intron 35.0%
! GCTCTAGATCACATTGATAA+AGG + Chr4:77346032-77346051 MsG0480022837.01.T01:three_prime_UTR 35.0%
! TTCTCCTTTTGTACAAGAAC+TGG - Chr4:77343809-77343828 None:intergenic 35.0%
!!! GAAATAATTGCCGGTTTTGA+CGG + Chr4:77345672-77345691 MsG0480022837.01.T01:intron 35.0%
!!! TTTATACCTGGTTTTGATGC+AGG + Chr4:77345807-77345826 MsG0480022837.01.T01:intron 35.0%
AAACAGGTACCTGTAAGCAT+AGG - Chr4:77344751-77344770 None:intergenic 40.0%
AACCAAGCAAAGTGTGTTGA+TGG + Chr4:77345560-77345579 MsG0480022837.01.T01:intron 40.0%
AAGCCACTTACATTTCGTGT+TGG + Chr4:77344338-77344357 MsG0480022837.01.T01:CDS 40.0%
ACACCAACACGAAATGTAAG+TGG - Chr4:77344344-77344363 None:intergenic 40.0%
ACCACCAGTTCTTGTACAAA+AGG + Chr4:77343802-77343821 MsG0480022837.01.T01:CDS 40.0%
ACCATTACTTCATCCTAGAG+TGG - Chr4:77345083-77345102 None:intergenic 40.0%
ATCCATCAACACACTTTGCT+TGG - Chr4:77345565-77345584 None:intergenic 40.0%
CACTAGCACCATATTCAGTT+GGG + Chr4:77343699-77343718 MsG0480022837.01.T01:CDS 40.0%
CCAATCTCCAAGGAAATTCA+AGG - Chr4:77345927-77345946 None:intergenic 40.0%
CCTTGAATTTCCTTGGAGAT+TGG + Chr4:77345924-77345943 MsG0480022837.01.T01:three_prime_UTR 40.0%
CTTCCTCCAGAATTTGGATA+TGG + Chr4:77344865-77344884 MsG0480022837.01.T01:CDS 40.0%
CTTGAGCCATATCCAAATTC+TGG - Chr4:77344874-77344893 None:intergenic 40.0%
GAATTAACTGTAGCTCCTTC+AGG + Chr4:77343938-77343957 MsG0480022837.01.T01:CDS 40.0%
GAATTTGGATATGGCTCAAG+AGG + Chr4:77344874-77344893 MsG0480022837.01.T01:CDS 40.0%
GCTGTTGCAGTAGGTATTAT+TGG - Chr4:77343899-77343918 None:intergenic 40.0%
GGAGCTACAGTTAATTCACA+TGG - Chr4:77343935-77343954 None:intergenic 40.0%
GTTATCAAAGGATGGGATGT+AGG + Chr4:77344700-77344719 MsG0480022837.01.T01:CDS 40.0%
TAAGGATGAAGAGTAGGAAG+TGG + Chr4:77345188-77345207 MsG0480022837.01.T01:intron 40.0%
TCACAATAAGAAAGGCCTGA+AGG - Chr4:77343956-77343975 None:intergenic 40.0%
TCACTAGCACCATATTCAGT+TGG + Chr4:77343698-77343717 MsG0480022837.01.T01:CDS 40.0%
TCTCCAAGGAAATTCAAGGA+AGG - Chr4:77345923-77345942 None:intergenic 40.0%
TGAATTCAGGATATGGCCAT+GGG - Chr4:77343666-77343685 None:intergenic 40.0%
TGATATGGATCCGTCAAAAC+CGG - Chr4:77345685-77345704 None:intergenic 40.0%
TTGAAGCTTCCTCCAGAATT+TGG + Chr4:77344859-77344878 MsG0480022837.01.T01:CDS 40.0%
! CTTACATTTCGTGTTGGTGT+TGG + Chr4:77344344-77344363 MsG0480022837.01.T01:CDS 40.0%
! TCCTTTTGTACAAGAACTGG+TGG - Chr4:77343806-77343825 None:intergenic 40.0%
! TTTTATATCGCGGCTGCAAT+AGG + Chr4:77344498-77344517 MsG0480022837.01.T01:intron 40.0%
!!! TCATGTTGGCCTTTTGTCTT+CGG + Chr4:77345043-77345062 MsG0480022837.01.T01:intron 40.0%
AAGCGCAATTTCGACTGCAT+TGG - Chr4:77344443-77344462 None:intergenic 45.0%
AATTGTAGGCTATGGTCCTC+AGG + Chr4:77343979-77343998 MsG0480022837.01.T01:CDS 45.0%
AGGCAAGTCCCAACTGAATA+TGG - Chr4:77343710-77343729 None:intergenic 45.0%
CAAGAACTGGTGGTTGTTGT+TGG - Chr4:77343796-77343815 None:intergenic 45.0%
CATGAACCTGCATCAAAACC+AGG - Chr4:77345816-77345835 None:intergenic 45.0%
CATGTCAAGTAGCTACTAGC+TGG - Chr4:77345301-77345320 None:intergenic 45.0%
CTGAATTCAGGATATGGCCA+TGG - Chr4:77343667-77343686 None:intergenic 45.0%
GAAGACCAAAACTCAAGGAG+AGG - Chr4:77343859-77343878 None:intergenic 45.0%
GAATTCAGGATATGGCCATG+GGG - Chr4:77343665-77343684 None:intergenic 45.0%
GAGCCATATCCAAATTCTGG+AGG - Chr4:77344871-77344890 None:intergenic 45.0%
GGAAGGTAATTTGACTGCCA+TGG - Chr4:77345906-77345925 None:intergenic 45.0%
GGAATTCCTCCTATGCTTAC+AGG + Chr4:77344739-77344758 MsG0480022837.01.T01:CDS 45.0%
GTGGCATAAGGATGAAGAGT+AGG + Chr4:77345182-77345201 MsG0480022837.01.T01:intron 45.0%
TAGCACCAACCGAAGACAAA+AGG - Chr4:77345055-77345074 None:intergenic 45.0%
TATGGTCCTCAGGCTGTTAA+GGG + Chr4:77343989-77344008 MsG0480022837.01.T01:CDS 45.0%
TATGTGGGGAGATTGGAGAA+TGG + Chr4:77344284-77344303 MsG0480022837.01.T01:CDS 45.0%
TCAAGAGGAGCTGGTTGTAA+AGG + Chr4:77344889-77344908 MsG0480022837.01.T01:intron 45.0%
TGGCCATATCCTGAATTCAG+TGG + Chr4:77343667-77343686 MsG0480022837.01.T01:five_prime_UTR 45.0%
! ATAGGCCTCTCCTTGAGTTT+TGG + Chr4:77343851-77343870 MsG0480022837.01.T01:CDS 45.0%
! CATGTGTGTAGGTGTCATGT+CGG - Chr4:77345627-77345646 None:intergenic 45.0%
! CATTGGACGCATTTTCTCTC+TGG - Chr4:77344426-77344445 None:intergenic 45.0%
! GGATGGGATGTAGGCATTTT+AGG + Chr4:77344709-77344728 MsG0480022837.01.T01:CDS 45.0%
! TGGGATGTAGGCATTTTAGG+AGG + Chr4:77344712-77344731 MsG0480022837.01.T01:CDS 45.0%
!! ATTTCGTGTTGGTGTTGGAG+AGG + Chr4:77344349-77344368 MsG0480022837.01.T01:CDS 45.0%
!! GCCACTCTAGGATGAAGTAA+TGG + Chr4:77345079-77345098 MsG0480022837.01.T01:intron 45.0%
!! GTAGGCATTTTAGGAGGTGA+TGG + Chr4:77344718-77344737 MsG0480022837.01.T01:CDS 45.0%
!! GTCGAATAAGAGTACCGCAT+CGG - Chr4:77345850-77345869 None:intergenic 45.0%
!! TCGAATAAGAGTACCGCATC+GGG - Chr4:77345849-77345868 None:intergenic 45.0%
!! TGTCTTCGGTTGGTGCTAAT+AGG + Chr4:77345057-77345076 MsG0480022837.01.T01:intron 45.0%
!!! GTTAAGTTTTTGGGGCTGCA+AGG - Chr4:77343738-77343757 None:intergenic 45.0%
AATCTCGGCTCCAATCTCCA+AGG - Chr4:77345937-77345956 None:intergenic 50.0%
AGAGGAGCTGGTTGTAAAGG+AGG + Chr4:77344892-77344911 MsG0480022837.01.T01:intron 50.0%
AGTTGTCCCTTAACAGCCTG+AGG - Chr4:77343998-77344017 None:intergenic 50.0%
CACAACACACGACGCTGATA+TGG - Chr4:77345700-77345719 None:intergenic 50.0%
CAGGTACCTGTAAGCATAGG+AGG - Chr4:77344748-77344767 None:intergenic 50.0%
CTATGGTCCTCAGGCTGTTA+AGG + Chr4:77343988-77344007 MsG0480022837.01.T01:CDS 50.0%
GGCACATTATGTGGGGAGAT+TGG + Chr4:77344277-77344296 MsG0480022837.01.T01:intron 50.0%
TCGAAATTGCGCTTGTGACG+CGG + Chr4:77344449-77344468 MsG0480022837.01.T01:intron 50.0%
TTCGACAGCAGCTACAATCG+TGG + Chr4:77344314-77344333 MsG0480022837.01.T01:CDS 50.0%
! ATGGCCATGGGGTCTGTTTT+TGG - Chr4:77343654-77343673 None:intergenic 50.0%
! ATGTGTCATTCCTCCCGATG+CGG + Chr4:77345833-77345852 MsG0480022837.01.T01:CDS 50.0%
! CTGGTGGTTGTTGTTGGACT+TGG - Chr4:77343790-77343809 None:intergenic 50.0%
! TGGTGCTAATAGGCCACTCT+AGG + Chr4:77345067-77345086 MsG0480022837.01.T01:intron 50.0%
!! AATAAGAGTACCGCATCGGG+AGG - Chr4:77345846-77345865 None:intergenic 50.0%
!! TGGCCATGGGGTCTGTTTTT+GGG - Chr4:77343653-77343672 None:intergenic 50.0%
!!! AAGTTTTTGGGGCTGCAAGG+AGG - Chr4:77343735-77343754 None:intergenic 50.0%
!!! GTTGGCCTTTTGTCTTCGGT+TGG + Chr4:77345047-77345066 MsG0480022837.01.T01:intron 50.0%
GCTTCAGCTGCTGTTGCAGT+AGG - Chr4:77343908-77343927 None:intergenic 55.0%
GGATATGGCTCAAGAGGAGC+TGG + Chr4:77344880-77344899 MsG0480022837.01.T01:CDS 55.0%
! TTTGGGGCTGCAAGGAGGTG+AGG - Chr4:77343730-77343749 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 77343649 77346196 77343649 ID=MsG0480022837.01;Name=MsG0480022837.01
Chr4 mRNA 77343649 77346196 77343649 ID=MsG0480022837.01.T01;Parent=MsG0480022837.01;Name=MsG0480022837.01.T01;_AED=0.32;_eAED=0.32;_QI=43|0.75|0.8|1|1|1|5|303|202
Chr4 exon 77343649 77344024 77343649 ID=MsG0480022837.01.T01:exon:11010;Parent=MsG0480022837.01.T01
Chr4 exon 77344278 77344370 77344278 ID=MsG0480022837.01.T01:exon:11011;Parent=MsG0480022837.01.T01
Chr4 exon 77344700 77344760 77344700 ID=MsG0480022837.01.T01:exon:11012;Parent=MsG0480022837.01.T01
Chr4 exon 77344845 77344901 77344845 ID=MsG0480022837.01.T01:exon:11013;Parent=MsG0480022837.01.T01
Chr4 exon 77345829 77346196 77345829 ID=MsG0480022837.01.T01:exon:11014;Parent=MsG0480022837.01.T01
Chr4 five_prime_UTR 77343649 77343691 77343649 ID=MsG0480022837.01.T01:five_prime_utr;Parent=MsG0480022837.01.T01
Chr4 CDS 77343692 77344024 77343692 ID=MsG0480022837.01.T01:cds;Parent=MsG0480022837.01.T01
Chr4 CDS 77344278 77344370 77344278 ID=MsG0480022837.01.T01:cds;Parent=MsG0480022837.01.T01
Chr4 CDS 77344700 77344760 77344700 ID=MsG0480022837.01.T01:cds;Parent=MsG0480022837.01.T01
Chr4 CDS 77344845 77344901 77344845 ID=MsG0480022837.01.T01:cds;Parent=MsG0480022837.01.T01
Chr4 CDS 77345829 77345893 77345829 ID=MsG0480022837.01.T01:cds;Parent=MsG0480022837.01.T01
Chr4 three_prime_UTR 77345894 77346196 77345894 ID=MsG0480022837.01.T01:three_prime_utr;Parent=MsG0480022837.01.T01
Gene Sequence

>MsG0480022837.01.T01

ATGAGTTCACTAGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCCAATTCACTAACAACATGTTCTGTCCAAGTCCAACAACAACCACCAGTTCTTGTACAAAAGGAGAATCAACTGAAAAGAAGAGAAGCAATAGGCCTCTCCTTGAGTTTTGGTCTTCTACATTCTTTATTGCAACCAATAATACCTACTGCAACAGCAGCTGAAGCAGTTCCATGTGAATTAACTGTAGCTCCTTCAGGCCTTTCTTATTGTGATAAAATTGTAGGCTATGGTCCTCAGGCTGTTAAGGGACAACTTATTAAGGCACATTATGTGGGGAGATTGGAGAATGGAAAAGTTTTCGACAGCAGCTACAATCGTGGCAAGCCACTTACATTTCGTGTTGGTGTTGGAGAGGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGGTGATGGAATTCCTCCTATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTCATGTGTCATTCCTCCCGATGCGGTACTCTTATTCGACGTAGAGTTTGTCAGCAAAGCATGA

Protein sequence

>MsG0480022837.01.T01

MSSLAPYSVGTCLTSLQPQKLNHSNSLTTCSVQVQQQPPVLVQKENQLKRREAIGLSLSFGLLHSLLQPIIPTATAAEAVPCELTVAPSGLSYCDKIVGYGPQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDVGILGGDGIPPMLTGGKRTLKLPPEFGYGSRGAGSCVIPPDAVLLFDVEFVSKA*