AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047578.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047578.01.T01 MTR_4g130530 95.865 266 11 0 1 266 1 266 0.0 499
MsG0880047578.01.T01 MTR_4g130530 95.045 222 11 0 1 222 1 222 5.21e-148 413
MsG0880047578.01.T01 MTR_4g130530 95.152 165 8 0 1 165 1 165 1.62e-104 301
MsG0880047578.01.T01 MTR_7g017820 96.970 33 1 0 188 220 4 36 8.34e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047578.01.T01 AT2G24060 55.556 270 98 4 1 254 1 264 1.61e-89 268
MsG0880047578.01.T01 AT4G30690 55.970 268 105 5 1 263 14 273 3.16e-87 261
MsG0880047578.01.T01 AT4G30690 49.254 268 95 5 1 263 14 245 2.31e-72 222
MsG0880047578.01.T01 AT1G34360 34.783 115 71 2 82 194 23 135 4.52e-11 63.2
MsG0880047578.01.T01 AT1G34360 34.783 115 71 2 82 194 89 201 4.56e-11 63.2
MsG0880047578.01.T01 AT1G34360 33.913 115 72 2 82 194 89 201 4.63e-11 63.2

Find 82 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCTGCAGCTTTCTT+TGG 0.214808 8:+88275156 None:intergenic
GGATTTGAAGGAGCTCAAAA+TGG 0.307470 8:-88276600 MsG0880047578.01.T01:CDS
ATAGAGGCAGCCTTGTCTAT+TGG 0.330859 8:-88274968 MsG0880047578.01.T01:three_prime_UTR
TTGTTAGAATAATGAATTAC+AGG 0.335848 8:-88278026 MsG0880047578.01.T01:intron
TATTGATCAGAGTCAGAATA+TGG 0.349868 8:-88278543 MsG0880047578.01.T01:CDS
TTAGAATACGTACCTAAGTT+TGG 0.359504 8:+88278663 None:intergenic
CACTAGAAGTTTAATTATAG+AGG 0.365740 8:-88274984 MsG0880047578.01.T01:three_prime_UTR
TGAAGATGCTGAACTTGATT+TGG 0.377323 8:-88278483 MsG0880047578.01.T01:intron
TCATCGTCAGCATCTTTGTT+AGG 0.382465 8:+88278703 None:intergenic
GCGGTTAACGGAATCCCTTC+AGG 0.395158 8:+88274935 None:intergenic
TGCGAGGCTTTGAGTTTAAC+GGG 0.413405 8:+88278874 None:intergenic
ATGCGAGGCTTTGAGTTTAA+CGG 0.431987 8:+88278873 None:intergenic
CACCGTAACGAACGGTTGCG+TGG 0.437086 8:+88278779 None:intergenic
TAATTCATTATTCTAACAAC+AGG 0.442385 8:+88278030 None:intergenic
AAGGTCATAGTAAACCTTAA+AGG 0.442796 8:-88275649 MsG0880047578.01.T01:CDS
CTCTTCAATAATGTATTCAT+AGG 0.449508 8:-88274911 MsG0880047578.01.T01:three_prime_UTR
ACTGCATAAGATTATCATCC+TGG 0.451475 8:+88274862 None:intergenic
AACGGGAACGACGGTGGTGG+TGG 0.470380 8:+88278891 None:intergenic
TAATGGATACAGATTCTCTA+AGG 0.471684 8:+88274712 None:intergenic
GTGTAAACCAACGCCATGGC+TGG 0.473725 8:-88278919 MsG0880047578.01.T01:exon
CGTCCTTCCGCCTACGGTGG+CGG 0.475627 8:-88278748 MsG0880047578.01.T01:CDS
GATTTGAAGGAGCTCAAAAT+GGG 0.476048 8:-88276599 MsG0880047578.01.T01:CDS
GCTTTCTTTGGTGTTTCTTG+AGG 0.476083 8:+88275168 None:intergenic
TGGAGTAGTATCTCTTGATC+AGG 0.480101 8:-88278519 MsG0880047578.01.T01:CDS
AACCTCCGTCCTTCCGCCTA+CGG 0.484697 8:-88278754 MsG0880047578.01.T01:CDS
AGGGAGAAGATTGAAAATTG+AGG 0.492839 8:+88278818 None:intergenic
GTGGGAAGGAAGAGTGAATG+AGG 0.494919 8:+88278798 None:intergenic
AGCTAGTCGGATGGATTTGA+AGG 0.496946 8:-88276612 MsG0880047578.01.T01:CDS
GGGAGAAGATTGAAAATTGA+GGG 0.497096 8:+88278819 None:intergenic
GAAATAGGTCGAATACCGTT+AGG 0.499801 8:-88278568 MsG0880047578.01.T01:intron
GCGTTGGTTTACACTTTCCA+CGG 0.503109 8:+88278928 None:intergenic
GATTGAAAATTGAGGGAATG+AGG 0.509324 8:+88278826 None:intergenic
TTATTGAAGAGAGCGGTTAA+CGG 0.525796 8:+88274923 None:intergenic
CCTTCCGCCTACGGTGGCGG+TGG 0.531353 8:-88278745 MsG0880047578.01.T01:CDS
TGGGAAGGAAGAGTGAATGA+GGG 0.537972 8:+88278799 None:intergenic
GATCAGCAGAAGAAAAGTGC+TGG 0.542127 8:-88276737 MsG0880047578.01.T01:intron
CAACTGATATTGCTCTGTTG+TGG 0.543060 8:-88275063 MsG0880047578.01.T01:three_prime_UTR
CGCCACCGTAGGCGGAAGGA+CGG 0.545325 8:+88278749 None:intergenic
TCGTCAGCATCTTTGTTAGG+AGG 0.545365 8:+88278706 None:intergenic
TCCCACGCAACCGTTCGTTA+CGG 0.549673 8:-88278781 MsG0880047578.01.T01:CDS
CATAGTTGAAAACTTCCATA+CGG 0.554407 8:-88275113 MsG0880047578.01.T01:exon
AGCTGCAGAAGATGAAGTCT+CGG 0.558494 8:-88275148 MsG0880047578.01.T01:CDS
TCAGCATCTTTGTTAGGAGG+AGG 0.559988 8:+88278709 None:intergenic
CTCTCGACCTCTCCAAACTT+AGG 0.560626 8:-88278675 MsG0880047578.01.T01:intron
TAACGAACGGTTGCGTGGGA+AGG 0.567710 8:+88278784 None:intergenic
TTCATTATTCTAACAACAGG+AGG 0.568824 8:+88278033 None:intergenic
GATCAGAGTCAGAATATGGT+TGG 0.572223 8:-88278539 MsG0880047578.01.T01:CDS
ATTGGAACGCTAAAGCCTGA+AGG 0.572980 8:-88274950 MsG0880047578.01.T01:three_prime_UTR
GAAGTTGCCACCGCCACCGT+AGG 0.573642 8:+88278738 None:intergenic
CTGCATAAGATTATCATCCT+GGG 0.575164 8:+88274863 None:intergenic
ACCGTAACGAACGGTTGCGT+GGG 0.576730 8:+88278780 None:intergenic
TCATTTGCAGCTTGCAACAG+AGG 0.582038 8:-88275259 MsG0880047578.01.T01:intron
CTCCGTCCTTCCGCCTACGG+TGG 0.582540 8:-88278751 MsG0880047578.01.T01:CDS
GTTGCCACCGCCACCGTAGG+CGG 0.587312 8:+88278741 None:intergenic
CTTTAGCGTTCCAATAGACA+AGG 0.590736 8:+88274958 None:intergenic
ATAGTTGAAAACTTCCATAC+GGG 0.590817 8:-88275112 MsG0880047578.01.T01:exon
GGTAATGCCAGCCATGGCGT+TGG 0.603488 8:+88278912 None:intergenic
TTGGAACGCTAAAGCCTGAA+GGG 0.603709 8:-88274949 MsG0880047578.01.T01:three_prime_UTR
GAGTTTAACGGGAACGACGG+TGG 0.603870 8:+88278885 None:intergenic
CCACCGCCACCGTAGGCGGA+AGG 0.608125 8:+88278745 None:intergenic
CACCGTAGGCGGAAGGACGG+AGG 0.610477 8:+88278752 None:intergenic
TTTAACGGGAACGACGGTGG+TGG 0.617395 8:+88278888 None:intergenic
TTTGCAGCTTGCAACAGAGG+AGG 0.620672 8:-88275256 MsG0880047578.01.T01:intron
TACGGGATTCTAGTTGTCGA+AGG 0.622537 8:-88275095 MsG0880047578.01.T01:three_prime_UTR
GGTGGTGGTAATGCCAGCCA+TGG 0.622734 8:+88278906 None:intergenic
TCTTGATCAGGCAATTCGAA+TGG 0.623560 8:-88278507 MsG0880047578.01.T01:CDS
TCGACAACTAGAATCCCGTA+TGG 0.629069 8:+88275098 None:intergenic
ACAGAGCAATATCAGTTGCA+AGG 0.629380 8:+88275068 None:intergenic
ATTCATAGGACAACAGCACA+AGG 0.645953 8:-88274897 MsG0880047578.01.T01:three_prime_UTR
ACACTTACTAGAACATGCAT+CGG 0.651186 8:-88278958 MsG0880047578.01.T01:five_prime_UTR
GAAAGTGTAAACCAACGCCA+TGG 0.651302 8:-88278923 MsG0880047578.01.T01:exon
ACTCTGATCAATAAGCCTAA+CGG 0.652818 8:+88278553 None:intergenic
TTTATTAGAGAATAGATGCG+AGG 0.654922 8:+88278858 None:intergenic
GAGGTTAACACCGTAACGAA+CGG 0.655700 8:+88278771 None:intergenic
GAATACATTATTGAAGAGAG+CGG 0.659540 8:+88274916 None:intergenic
TTTGAGTTTAACGGGAACGA+CGG 0.669820 8:+88278882 None:intergenic
CTGTACGTTTGAAAGCTGCA+CGG 0.670288 8:-88275791 MsG0880047578.01.T01:CDS
GTAGGTAATAGTATCTGCAG+AGG 0.675285 8:-88278061 MsG0880047578.01.T01:intron
ATACGTACCTAAGTTTGGAG+AGG 0.687696 8:+88278668 None:intergenic
CATGCATCGGAGTTGAACCG+TGG 0.702183 8:-88278945 MsG0880047578.01.T01:five_prime_UTR
ACAAGGCTGATCGATCACCC+AGG 0.702899 8:-88274880 MsG0880047578.01.T01:three_prime_UTR
ATTTGAAGGAGCTCAAAATG+GGG 0.714952 8:-88276598 MsG0880047578.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTAAATGATATAA+AGG + Chr8:88276999-88277018 None:intergenic 10.0%
!!! AATCATCAATATTTTTATAA+GGG - Chr8:88277234-88277253 MsG0880047578.01.T01:intron 10.0%
!!! AATGATTATATTATATGTTT+TGG - Chr8:88276022-88276041 MsG0880047578.01.T01:intron 10.0%
!!! TAATCATCAATATTTTTATA+AGG - Chr8:88277233-88277252 MsG0880047578.01.T01:intron 10.0%
!!! TTTTATTTTTATAAGTCTTT+AGG - Chr8:88276393-88276412 MsG0880047578.01.T01:intron 10.0%
!! AAAAATTAACAAGTAAAGAT+AGG + Chr8:88277342-88277361 None:intergenic 15.0%
!! TACTGTAAATATTAATTAGA+TGG + Chr8:88276493-88276512 None:intergenic 15.0%
!! TGTAAAAGAAGAAAAATATA+AGG + Chr8:88276888-88276907 None:intergenic 15.0%
!! TGTAAAGTTTAATATATTTC+AGG + Chr8:88275696-88275715 None:intergenic 15.0%
!! TTAGATATAAATTTCTACTT+AGG + Chr8:88278391-88278410 None:intergenic 15.0%
!!! ATATCTTATTTTATTATCAC+CGG - Chr8:88278350-88278369 MsG0880047578.01.T01:intron 15.0%
!!! ATTTACAATTTTACAGAATT+CGG - Chr8:88277006-88277025 MsG0880047578.01.T01:intron 15.0%
!! AAAAATGAAATGAAATTCGA+AGG + Chr8:88278868-88278887 None:intergenic 20.0%
!! AACAAGATATAAATGATGAA+AGG + Chr8:88277532-88277551 None:intergenic 20.0%
!! AAGTTTAATATATTTCAGGA+CGG + Chr8:88275692-88275711 None:intergenic 20.0%
!! ACAAAAATTCGAAATAGAAA+TGG + Chr8:88275066-88275085 None:intergenic 20.0%
!! ACCATCTTAATCTTAAAAAA+CGG + Chr8:88276429-88276448 None:intergenic 20.0%
!! TAATTCATTATTCTAACAAC+AGG + Chr8:88275653-88275672 None:intergenic 20.0%
!! TATACCAATGTTATGAAAAT+TGG + Chr8:88276110-88276129 None:intergenic 20.0%
!! TATAGTATAAAAAAAACCAG+TGG - Chr8:88275786-88275805 MsG0880047578.01.T01:CDS 20.0%
!! TTGTTAGAATAATGAATTAC+AGG - Chr8:88275654-88275673 MsG0880047578.01.T01:CDS 20.0%
!!! TCATTCCAATTTTGTTTTTT+CGG - Chr8:88276655-88276674 MsG0880047578.01.T01:intron 20.0%
!!! TGTGATTTTGTTTTTTGTTT+TGG - Chr8:88277828-88277847 MsG0880047578.01.T01:intron 20.0%
!!! TTACTTTCGATTTTTGAAAT+AGG - Chr8:88275097-88275116 MsG0880047578.01.T01:three_prime_UTR 20.0%
! AAATTTATATCTAAACCACG+CGG - Chr8:88278397-88278416 MsG0880047578.01.T01:intron 25.0%
! AATTCGAAATAGAAATGGAA+TGG + Chr8:88275061-88275080 None:intergenic 25.0%
! ATATCTGAATTCTTGTTCTT+TGG - Chr8:88277169-88277188 MsG0880047578.01.T01:intron 25.0%
! CACTAGAAGTTTAATTATAG+AGG - Chr8:88278696-88278715 MsG0880047578.01.T01:CDS 25.0%
! CTCTTCAATAATGTATTCAT+AGG - Chr8:88278769-88278788 MsG0880047578.01.T01:CDS 25.0%
! GATAGACAATTATCCAAATT+TGG - Chr8:88276219-88276238 MsG0880047578.01.T01:intron 25.0%
! TAAAGCATAAACATTGTCTT+GGG - Chr8:88277696-88277715 MsG0880047578.01.T01:intron 25.0%
! TAAGATTAAGATGGTGTATT+TGG - Chr8:88276434-88276453 MsG0880047578.01.T01:intron 25.0%
! TAATGAATGTGCAATCAATT+AGG - Chr8:88277558-88277577 MsG0880047578.01.T01:intron 25.0%
! TGTCTTGAATGTTGTTAATT+TGG - Chr8:88276606-88276625 MsG0880047578.01.T01:CDS 25.0%
! TTAAAGCATAAACATTGTCT+TGG - Chr8:88277695-88277714 MsG0880047578.01.T01:intron 25.0%
! TTCATAACATTGGTATAAAG+TGG - Chr8:88276113-88276132 MsG0880047578.01.T01:intron 25.0%
! TTTCATGAAACAACATGTTT+GGG + Chr8:88276740-88276759 None:intergenic 25.0%
!! AAATGGATAGCTCAATTTTT+AGG - Chr8:88276366-88276385 MsG0880047578.01.T01:intron 25.0%
!! AATGGATAGCTCAATTTTTA+GGG - Chr8:88276367-88276386 MsG0880047578.01.T01:intron 25.0%
!! ATCTTTTTAATGTAGCTAGT+CGG - Chr8:88277055-88277074 MsG0880047578.01.T01:intron 25.0%
!! CTATTTCGAATGTTCATTTT+TGG - Chr8:88276158-88276177 MsG0880047578.01.T01:intron 25.0%
!! TTGAATGTTGTTAATTTGGA+TGG - Chr8:88276610-88276629 MsG0880047578.01.T01:CDS 25.0%
!! TTTTCTATGAAACATGAGAA+AGG + Chr8:88277134-88277153 None:intergenic 25.0%
!!! ATTCCAATTTTGTTTTTTCG+GGG - Chr8:88276657-88276676 MsG0880047578.01.T01:intron 25.0%
!!! CATTCCAATTTTGTTTTTTC+GGG - Chr8:88276656-88276675 MsG0880047578.01.T01:intron 25.0%
!!! GCTGTTTTAATAAGATATCT+TGG - Chr8:88275372-88275391 MsG0880047578.01.T01:intron 25.0%
!!! TAGGCAATAATTTTTTTCTC+CGG + Chr8:88278372-88278391 None:intergenic 25.0%
!!! TTATGAAGATGTTTTTGTCA+CGG + Chr8:88278460-88278479 None:intergenic 25.0%
AAAATAAGATATCAGCAGAG+TGG + Chr8:88278342-88278361 None:intergenic 30.0%
AAAATGGGGTAATATCCTAA+AGG - Chr8:88277096-88277115 MsG0880047578.01.T01:intron 30.0%
AAGGTCATAGTAAACCTTAA+AGG - Chr8:88278031-88278050 MsG0880047578.01.T01:CDS 30.0%
AAGTGTAAGTATCTCTTATC+TGG + Chr8:88274708-88274727 None:intergenic 30.0%
AATTGATCCATAACCAAGAA+TGG + Chr8:88277213-88277232 None:intergenic 30.0%
AATTTATATCTAAACCACGC+GGG - Chr8:88278398-88278417 MsG0880047578.01.T01:intron 30.0%
AGTGTAAGTATCTCTTATCT+GGG + Chr8:88274707-88274726 None:intergenic 30.0%
ATAAGAGCAAGAAAAAAGAC+AGG + Chr8:88276536-88276555 None:intergenic 30.0%
ATAGTTGAAAACTTCCATAC+GGG - Chr8:88278568-88278587 MsG0880047578.01.T01:intron 30.0%
ATTGATCCATAACCAAGAAT+GGG + Chr8:88277212-88277231 None:intergenic 30.0%
CAATGTTATGAAAATTGGAC+CGG + Chr8:88276105-88276124 None:intergenic 30.0%
CATAAGTAATATGTGCTCAA+AGG + Chr8:88275552-88275571 None:intergenic 30.0%
CATAGTTGAAAACTTCCATA+CGG - Chr8:88278567-88278586 MsG0880047578.01.T01:intron 30.0%
CTTTCATGAAACAACATGTT+TGG + Chr8:88276741-88276760 None:intergenic 30.0%
GAAATAGAAATGGAATGGAA+TGG + Chr8:88275056-88275075 None:intergenic 30.0%
GAATACATTATTGAAGAGAG+CGG + Chr8:88278767-88278786 None:intergenic 30.0%
GGTTCATAAAAAGTAAACTC+TGG + Chr8:88277762-88277781 None:intergenic 30.0%
TAAAAAAAACCAGTGGTTGA+TGG - Chr8:88275793-88275812 MsG0880047578.01.T01:CDS 30.0%
TACTGCTCAAAGATAAACAT+AGG - Chr8:88277489-88277508 MsG0880047578.01.T01:intron 30.0%
TATGTTTATCTTTGAGCAGT+AGG + Chr8:88277490-88277509 None:intergenic 30.0%
TATTGATCAGAGTCAGAATA+TGG - Chr8:88275137-88275156 MsG0880047578.01.T01:CDS 30.0%
TCAAAGATAAACATAGGAAG+TGG - Chr8:88277495-88277514 MsG0880047578.01.T01:intron 30.0%
TCTATCATATAGGCATGATT+TGG - Chr8:88275243-88275262 MsG0880047578.01.T01:CDS 30.0%
TTAGAATACGTACCTAAGTT+TGG + Chr8:88275020-88275039 None:intergenic 30.0%
TTATTGCCGTACATTCTTAT+GGG - Chr8:88277284-88277303 MsG0880047578.01.T01:intron 30.0%
TTCAAGTGTATTCAGATCTT+TGG - Chr8:88277991-88278010 MsG0880047578.01.T01:intron 30.0%
TTCATTATTCTAACAACAGG+AGG + Chr8:88275650-88275669 None:intergenic 30.0%
TTGACTCAGTTCTATCATAT+AGG - Chr8:88275233-88275252 MsG0880047578.01.T01:CDS 30.0%
TTGTGTTAAGTGAAAGTCAA+AGG + Chr8:88276772-88276791 None:intergenic 30.0%
TTTATTAGAGAATAGATGCG+AGG + Chr8:88274825-88274844 None:intergenic 30.0%
! ATGTTGTTAATTTGGATGGT+AGG - Chr8:88276614-88276633 MsG0880047578.01.T01:intron 30.0%
! CTGGTAAGCATTGTATTTAT+TGG - Chr8:88276962-88276981 MsG0880047578.01.T01:intron 30.0%
! TAATGGATACAGATTCTCTA+AGG + Chr8:88278971-88278990 None:intergenic 30.0%
!! ATTCTTTTTCACGACCTTTA+AGG + Chr8:88278048-88278067 None:intergenic 30.0%
!! ATTTTTGAATGATGGTGACA+AGG - Chr8:88277914-88277933 MsG0880047578.01.T01:intron 30.0%
!! GTTCCAATTTTAATGTGACA+GGG - Chr8:88276284-88276303 MsG0880047578.01.T01:intron 30.0%
!! TAAAAAGTAAACTCTGGAAC+TGG + Chr8:88277756-88277775 None:intergenic 30.0%
!! TGAACTGATTTGAAAGAGTT+GGG + Chr8:88275493-88275512 None:intergenic 30.0%
!! TGTTCCAATTTTAATGTGAC+AGG - Chr8:88276283-88276302 MsG0880047578.01.T01:intron 30.0%
!! TTCCAATTTTAATGTGACAG+GGG - Chr8:88276285-88276304 MsG0880047578.01.T01:intron 30.0%
!!! GCCGTTTTTTAAGATTAAGA+TGG - Chr8:88276425-88276444 MsG0880047578.01.T01:intron 30.0%
!!! GTTTTGGTTTGTTAGTTTTG+TGG - Chr8:88276038-88276057 MsG0880047578.01.T01:intron 30.0%
!!! TTCTGCACTTCAGTTTTATT+TGG + Chr8:88278491-88278510 None:intergenic 30.0%
AACATGAGAAAGGATGATCT+AGG + Chr8:88277124-88277143 None:intergenic 35.0%
AAGGTCGTGAAAAAGAATTC+AGG - Chr8:88278050-88278069 MsG0880047578.01.T01:CDS 35.0%
AAGTTGTGTGTGTGTAAGTA+TGG + Chr8:88275745-88275764 None:intergenic 35.0%
AATATGTGCTCAAAGGTCAA+TGG + Chr8:88275545-88275564 None:intergenic 35.0%
AATCAGAAGAATCTCTTGGT+GGG - Chr8:88276790-88276809 MsG0880047578.01.T01:intron 35.0%
AATCAGATTTGACCCATTCT+TGG - Chr8:88277197-88277216 MsG0880047578.01.T01:intron 35.0%
AATCAGTTCAGTCATTGAAC+CGG - Chr8:88275839-88275858 MsG0880047578.01.T01:intron 35.0%
AATTGCTAGTACTACAGCAT+AGG + Chr8:88278199-88278218 None:intergenic 35.0%
ACACAATCAGAAGAATCTCT+TGG - Chr8:88276786-88276805 MsG0880047578.01.T01:intron 35.0%
ACACTTACTAGAACATGCAT+CGG - Chr8:88274722-88274741 MsG0880047578.01.T01:three_prime_UTR 35.0%
ACTAAAGTTGAACCACTGAA+CGG + Chr8:88275881-88275900 None:intergenic 35.0%
ACTCTGATCAATAAGCCTAA+CGG + Chr8:88275130-88275149 None:intergenic 35.0%
ACTGCATAAGATTATCATCC+TGG + Chr8:88278821-88278840 None:intergenic 35.0%
ACTTGTGGCTACTTAATGAT+TGG + Chr8:88276187-88276206 None:intergenic 35.0%
AGAATGGGTCAAATCTGATT+AGG + Chr8:88277197-88277216 None:intergenic 35.0%
AGCATTTGTACCAACAAAGA+AGG - Chr8:88278172-88278191 MsG0880047578.01.T01:intron 35.0%
AGGATTAAACAAACTCCTCT+TGG + Chr8:88277470-88277489 None:intergenic 35.0%
AGGGAGAAGATTGAAAATTG+AGG + Chr8:88274865-88274884 None:intergenic 35.0%
ATCATTAAGTAGCCACAAGT+TGG - Chr8:88276187-88276206 MsG0880047578.01.T01:intron 35.0%
ATGACATGACACAATTGCAT+AGG - Chr8:88275569-88275588 MsG0880047578.01.T01:intron 35.0%
ATGTGCAATCAATTAGGACA+AGG - Chr8:88277564-88277583 MsG0880047578.01.T01:intron 35.0%
ATTTGAAGGAGCTCAAAATG+GGG - Chr8:88277082-88277101 MsG0880047578.01.T01:intron 35.0%
ATTTGACCCATTCTTGGTTA+TGG - Chr8:88277203-88277222 MsG0880047578.01.T01:intron 35.0%
CTGCATAAGATTATCATCCT+GGG + Chr8:88278820-88278839 None:intergenic 35.0%
GAAACGCTATACACCAAATT+TGG + Chr8:88276235-88276254 None:intergenic 35.0%
GATTGAAAATTGAGGGAATG+AGG + Chr8:88274857-88274876 None:intergenic 35.0%
GATTTGAAGGAGCTCAAAAT+GGG - Chr8:88277081-88277100 MsG0880047578.01.T01:intron 35.0%
GGGAGAAGATTGAAAATTGA+GGG + Chr8:88274864-88274883 None:intergenic 35.0%
GTAAACCCCATAAGAATGTA+CGG + Chr8:88277293-88277312 None:intergenic 35.0%
GTTATTGCCGTACATTCTTA+TGG - Chr8:88277283-88277302 MsG0880047578.01.T01:intron 35.0%
TAAATATCTGCAGCGTGAAA+TGG - Chr8:88276349-88276368 MsG0880047578.01.T01:intron 35.0%
TATTGCCGTACATTCTTATG+GGG - Chr8:88277285-88277304 MsG0880047578.01.T01:intron 35.0%
TGAAGATGCTGAACTTGATT+TGG - Chr8:88275197-88275216 MsG0880047578.01.T01:CDS 35.0%
TGCAGATACTATTACCTACA+GGG + Chr8:88275618-88275637 None:intergenic 35.0%
TGCTTCTTGGTTATGAACTT+GGG - Chr8:88277424-88277443 MsG0880047578.01.T01:intron 35.0%
TGGTATAAAGTGGTCATGTA+AGG - Chr8:88276123-88276142 MsG0880047578.01.T01:intron 35.0%
TTACTCTATGTTCTCTTGGA+AGG - Chr8:88277309-88277328 MsG0880047578.01.T01:intron 35.0%
TTATGAACTTGGGTTCAGTT+AGG - Chr8:88277434-88277453 MsG0880047578.01.T01:intron 35.0%
TTATTGAAGAGAGCGGTTAA+CGG + Chr8:88278760-88278779 None:intergenic 35.0%
TTGCTTCTTGGTTATGAACT+TGG - Chr8:88277423-88277442 MsG0880047578.01.T01:intron 35.0%
! AATGAGTATTGCGAATGCAA+GGG - Chr8:88275430-88275449 MsG0880047578.01.T01:intron 35.0%
! ATTGTTCACAACTTGCTTCT+TGG - Chr8:88277411-88277430 MsG0880047578.01.T01:intron 35.0%
! CGGTCCAATTTTCATAACAT+TGG - Chr8:88276103-88276122 MsG0880047578.01.T01:intron 35.0%
! GCACGGAAATTTTTGAATGA+TGG - Chr8:88277906-88277925 MsG0880047578.01.T01:intron 35.0%
! TAATGAGTATTGCGAATGCA+AGG - Chr8:88275429-88275448 MsG0880047578.01.T01:intron 35.0%
! TGCATTTAGAGCAGTTTGTT+TGG - Chr8:88277587-88277606 MsG0880047578.01.T01:intron 35.0%
! TGCTGCTTAACGATAAACAT+GGG - Chr8:88277613-88277632 MsG0880047578.01.T01:intron 35.0%
! TTGCTGCTTAACGATAAACA+TGG - Chr8:88277612-88277631 MsG0880047578.01.T01:intron 35.0%
! TTTTAATGTAGCTAGTCGGA+TGG - Chr8:88277059-88277078 MsG0880047578.01.T01:intron 35.0%
!! ATAAGGAACACTGACTTTCA+AGG + Chr8:88276871-88276890 None:intergenic 35.0%
!! GGATTGATTGAGCTATTTCT+AGG - Chr8:88275451-88275470 MsG0880047578.01.T01:intron 35.0%
!! GTGAACTGATTTGAAAGAGT+TGG + Chr8:88275494-88275513 None:intergenic 35.0%
!!! AATTTTGTTTTTTCGGGGTG+GGG - Chr8:88276662-88276681 MsG0880047578.01.T01:intron 35.0%
!!! CAATTTTGTTTTTTCGGGGT+GGG - Chr8:88276661-88276680 MsG0880047578.01.T01:intron 35.0%
ACAGAGCAATATCAGTTGCA+AGG + Chr8:88278615-88278634 None:intergenic 40.0%
ACATAGGAAGTGGCAAATGT+CGG - Chr8:88277505-88277524 MsG0880047578.01.T01:intron 40.0%
ATACGTACCTAAGTTTGGAG+AGG + Chr8:88275015-88275034 None:intergenic 40.0%
ATCAGAAGAATCTCTTGGTG+GGG - Chr8:88276791-88276810 MsG0880047578.01.T01:intron 40.0%
ATCGTCCTATAACCAACTTG+TGG + Chr8:88276202-88276221 None:intergenic 40.0%
ATCTTTGGATCAATTGCTGC+AGG - Chr8:88278006-88278025 MsG0880047578.01.T01:intron 40.0%
ATTCATAGGACAACAGCACA+AGG - Chr8:88278783-88278802 MsG0880047578.01.T01:CDS 40.0%
CAACTGATATTGCTCTGTTG+TGG - Chr8:88278617-88278636 MsG0880047578.01.T01:intron 40.0%
CAATCAGAAGAATCTCTTGG+TGG - Chr8:88276789-88276808 MsG0880047578.01.T01:intron 40.0%
CCACCCCGAAAAAACAAAAT+TGG + Chr8:88276663-88276682 None:intergenic 40.0%
CGGTGAATAAGTGTCTTAAC+CGG + Chr8:88275861-88275880 None:intergenic 40.0%
CTACAACTCAAAACTAACGC+TGG + Chr8:88277783-88277802 None:intergenic 40.0%
CTCCCCTGTCACATTAAAAT+TGG + Chr8:88276290-88276309 None:intergenic 40.0%
CTGCAGATACTATTACCTAC+AGG + Chr8:88275619-88275638 None:intergenic 40.0%
CTTTAGCGTTCCAATAGACA+AGG + Chr8:88278725-88278744 None:intergenic 40.0%
GAAATAGGTCGAATACCGTT+AGG - Chr8:88275112-88275131 MsG0880047578.01.T01:exon 40.0%
GATCAGAGTCAGAATATGGT+TGG - Chr8:88275141-88275160 MsG0880047578.01.T01:CDS 40.0%
GCAGATACTATTACCTACAG+GGG + Chr8:88275617-88275636 None:intergenic 40.0%
GGATTTGAAGGAGCTCAAAA+TGG - Chr8:88277080-88277099 MsG0880047578.01.T01:intron 40.0%
GGGTTTACTCTATGTTCTCT+TGG - Chr8:88277305-88277324 MsG0880047578.01.T01:intron 40.0%
GTAGGTAATAGTATCTGCAG+AGG - Chr8:88275619-88275638 MsG0880047578.01.T01:CDS 40.0%
GTGCTTTACAGATACTCTCT+TGG - Chr8:88278231-88278250 MsG0880047578.01.T01:intron 40.0%
TCAACCAGAACATAGCAAAG+CGG + Chr8:88278134-88278153 None:intergenic 40.0%
TCATCGTCAGCATCTTTGTT+AGG + Chr8:88274980-88274999 None:intergenic 40.0%
TCATCTTCTGCAGCTTTCTT+TGG + Chr8:88278527-88278546 None:intergenic 40.0%
TCTTGATCAGGCAATTCGAA+TGG - Chr8:88275173-88275192 MsG0880047578.01.T01:CDS 40.0%
TGCTTAACGATAAACATGGG+AGG - Chr8:88277616-88277635 MsG0880047578.01.T01:intron 40.0%
TGGAGTAGTATCTCTTGATC+AGG - Chr8:88275161-88275180 MsG0880047578.01.T01:CDS 40.0%
TTTGTAATGCCATCAACCAC+TGG + Chr8:88275805-88275824 None:intergenic 40.0%
! AGACGTTTTCAGAACGATGT+TGG - Chr8:88278094-88278113 MsG0880047578.01.T01:intron 40.0%
! GACGTTTTCAGAACGATGTT+GGG - Chr8:88278095-88278114 MsG0880047578.01.T01:intron 40.0%
! TTTGAGTTTAACGGGAACGA+CGG + Chr8:88274801-88274820 None:intergenic 40.0%
! TTTTCAGAACGATGTTGGGA+AGG - Chr8:88278099-88278118 MsG0880047578.01.T01:intron 40.0%
!! AGTAGCCACAAGTTGGTTAT+AGG - Chr8:88276194-88276213 MsG0880047578.01.T01:intron 40.0%
!! ATGCGAGGCTTTGAGTTTAA+CGG + Chr8:88274810-88274829 None:intergenic 40.0%
!! GCTTTCTTTGGTGTTTCTTG+AGG + Chr8:88278515-88278534 None:intergenic 40.0%
!!! CCAATTTTGTTTTTTCGGGG+TGG - Chr8:88276660-88276679 MsG0880047578.01.T01:intron 40.0%
AGCTGCAGAAGATGAAGTCT+CGG - Chr8:88278532-88278551 MsG0880047578.01.T01:CDS 45.0%
AGGATGATCTAGGCTCCTTT+AGG + Chr8:88277114-88277133 None:intergenic 45.0%
ATTGGAACGCTAAAGCCTGA+AGG - Chr8:88278730-88278749 MsG0880047578.01.T01:CDS 45.0%
CAGCATAGGACCTTCTTTGT+TGG + Chr8:88278185-88278204 None:intergenic 45.0%
CATAGGAAGTGGCAAATGTC+GGG - Chr8:88277506-88277525 MsG0880047578.01.T01:intron 45.0%
CTCACTTGCATACTTACTCG+TGG - Chr8:88276844-88276863 MsG0880047578.01.T01:intron 45.0%
CTGTACGTTTGAAAGCTGCA+CGG - Chr8:88277889-88277908 MsG0880047578.01.T01:intron 45.0%
GAACACCAAGTAGCTGCATA+AGG + Chr8:88276268-88276287 None:intergenic 45.0%
GACACTTATTCACCGTTCAG+TGG - Chr8:88275866-88275885 MsG0880047578.01.T01:intron 45.0%
GAGGTTAACACCGTAACGAA+CGG + Chr8:88274912-88274931 None:intergenic 45.0%
GAGTAAGTATGCAAGTGAGC+AGG + Chr8:88276843-88276862 None:intergenic 45.0%
GGATCAATTGCTGCAGGTTA+AGG - Chr8:88278012-88278031 MsG0880047578.01.T01:intron 45.0%
GTTATGAAAATTGGACCGGC+TGG + Chr8:88276101-88276120 None:intergenic 45.0%
TCAGCATCTTTGTTAGGAGG+AGG + Chr8:88274974-88274993 None:intergenic 45.0%
TCATTTGCAGCTTGCAACAG+AGG - Chr8:88278421-88278440 MsG0880047578.01.T01:intron 45.0%
TCGACAACTAGAATCCCGTA+TGG + Chr8:88278585-88278604 None:intergenic 45.0%
TCGTCAGCATCTTTGTTAGG+AGG + Chr8:88274977-88274996 None:intergenic 45.0%
TGGGAAGGAAGAGTGAATGA+GGG + Chr8:88274884-88274903 None:intergenic 45.0%
TTAGGAAACGACACACCAAG+AGG - Chr8:88277452-88277471 MsG0880047578.01.T01:intron 45.0%
TTGATTAGACTCCTCCTGAC+TGG - Chr8:88276067-88276086 MsG0880047578.01.T01:intron 45.0%
TTGGAACGCTAAAGCCTGAA+GGG - Chr8:88278731-88278750 MsG0880047578.01.T01:CDS 45.0%
TTTAATGTGACAGGGGAGAG+TGG - Chr8:88276292-88276311 MsG0880047578.01.T01:intron 45.0%
! AGCTAGTCGGATGGATTTGA+AGG - Chr8:88277068-88277087 MsG0880047578.01.T01:intron 45.0%
! ATAGAGGCAGCCTTGTCTAT+TGG - Chr8:88278712-88278731 MsG0880047578.01.T01:CDS 45.0%
! GAAAGTGTAAACCAACGCCA+TGG - Chr8:88274757-88274776 MsG0880047578.01.T01:three_prime_UTR 45.0%
! GATCAGCAGAAGAAAAGTGC+TGG - Chr8:88276943-88276962 MsG0880047578.01.T01:intron 45.0%
! GGTAGTAAAGGTGGGAGTAT+CGG - Chr8:88276313-88276332 MsG0880047578.01.T01:intron 45.0%
! TACGGGATTCTAGTTGTCGA+AGG - Chr8:88278585-88278604 MsG0880047578.01.T01:intron 45.0%
!! AAAATTGGACCGGCTGGTTT+GGG + Chr8:88276095-88276114 None:intergenic 45.0%
!! GCGTTGGTTTACACTTTCCA+CGG + Chr8:88274755-88274774 None:intergenic 45.0%
!! TCTAGCCTTATGCAGCTACT+TGG - Chr8:88276260-88276279 MsG0880047578.01.T01:intron 45.0%
!! TGCGAGGCTTTGAGTTTAAC+GGG + Chr8:88274809-88274828 None:intergenic 45.0%
ACAGGGGAGAGTGGTAGTAA+AGG - Chr8:88276301-88276320 MsG0880047578.01.T01:intron 50.0%
CTCTCGACCTCTCCAAACTT+AGG - Chr8:88275005-88275024 MsG0880047578.01.T01:three_prime_UTR 50.0%
GGGAGAGTGGTAGTAAAGGT+GGG - Chr8:88276305-88276324 MsG0880047578.01.T01:intron 50.0%
GTGGGAAGGAAGAGTGAATG+AGG + Chr8:88274885-88274904 None:intergenic 50.0%
TACCTACAGGGGAAAGAGAG+TGG + Chr8:88275606-88275625 None:intergenic 50.0%
TTCCACTCTCTTTCCCCTGT+AGG - Chr8:88275601-88275620 MsG0880047578.01.T01:CDS 50.0%
TTTGCAGCTTGCAACAGAGG+AGG - Chr8:88278424-88278443 MsG0880047578.01.T01:intron 50.0%
! GAAAATTGGACCGGCTGGTT+TGG + Chr8:88276096-88276115 None:intergenic 50.0%
!! GATGCCGCTTTGCTATGTTC+TGG - Chr8:88278127-88278146 MsG0880047578.01.T01:intron 50.0%
ACAAGGCTGATCGATCACCC+AGG - Chr8:88278800-88278819 MsG0880047578.01.T01:CDS 55.0%
ACCGTAACGAACGGTTGCGT+GGG + Chr8:88274903-88274922 None:intergenic 55.0%
CATGCATCGGAGTTGAACCG+TGG - Chr8:88274735-88274754 MsG0880047578.01.T01:three_prime_UTR 55.0%
GAGTTTAACGGGAACGACGG+TGG + Chr8:88274798-88274817 None:intergenic 55.0%
GCGGTTAACGGAATCCCTTC+AGG + Chr8:88278748-88278767 None:intergenic 55.0%
GGGGAGAGTGGTAGTAAAGG+TGG - Chr8:88276304-88276323 MsG0880047578.01.T01:intron 55.0%
GTGTAAACCAACGCCATGGC+TGG - Chr8:88274761-88274780 MsG0880047578.01.T01:three_prime_UTR 55.0%
TAACGAACGGTTGCGTGGGA+AGG + Chr8:88274899-88274918 None:intergenic 55.0%
TCCCACGCAACCGTTCGTTA+CGG - Chr8:88274899-88274918 MsG0880047578.01.T01:three_prime_UTR 55.0%
TTTAACGGGAACGACGGTGG+TGG + Chr8:88274795-88274814 None:intergenic 55.0%
AACCTCCGTCCTTCCGCCTA+CGG - Chr8:88274926-88274945 MsG0880047578.01.T01:three_prime_UTR 60.0%
CAAGCTGCAAATGACCCGCG+TGG + Chr8:88278415-88278434 None:intergenic 60.0%
CACCGTAACGAACGGTTGCG+TGG + Chr8:88274904-88274923 None:intergenic 60.0%
GGTAATGCCAGCCATGGCGT+TGG + Chr8:88274771-88274790 None:intergenic 60.0%
! GGTGGTGGTAATGCCAGCCA+TGG + Chr8:88274777-88274796 None:intergenic 60.0%
! TGACTGGCTCCCAAACCAGC+CGG - Chr8:88276083-88276102 MsG0880047578.01.T01:intron 60.0%
! TGGTTTGGGAGCCAGTCAGG+AGG + Chr8:88276081-88276100 None:intergenic 60.0%
GAAGTTGCCACCGCCACCGT+AGG + Chr8:88274945-88274964 None:intergenic 65.0%
! AACGGGAACGACGGTGGTGG+TGG + Chr8:88274792-88274811 None:intergenic 65.0%
!! GGCTGGTTTGGGAGCCAGTC+AGG + Chr8:88276084-88276103 None:intergenic 65.0%
CACCGTAGGCGGAAGGACGG+AGG + Chr8:88274931-88274950 None:intergenic 70.0%
CGCCACCGTAGGCGGAAGGA+CGG + Chr8:88274934-88274953 None:intergenic 70.0%
CGTCCTTCCGCCTACGGTGG+CGG - Chr8:88274932-88274951 MsG0880047578.01.T01:three_prime_UTR 70.0%
CTCCGTCCTTCCGCCTACGG+TGG - Chr8:88274929-88274948 MsG0880047578.01.T01:three_prime_UTR 70.0%
GTTGCCACCGCCACCGTAGG+CGG + Chr8:88274942-88274961 None:intergenic 70.0%
CCACCGCCACCGTAGGCGGA+AGG + Chr8:88274938-88274957 None:intergenic 75.0%
! CCTTCCGCCTACGGTGGCGG+TGG - Chr8:88274935-88274954 MsG0880047578.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 88274707 88278995 88274707 ID=MsG0880047578.01;Name=MsG0880047578.01
Chr8 mRNA 88274707 88278995 88274707 ID=MsG0880047578.01.T01;Parent=MsG0880047578.01;Name=MsG0880047578.01.T01;_AED=0.49;_eAED=0.49;_QI=69|1|1|1|0.57|0.75|8|424|266
Chr8 exon 88274707 88275271 88274707 ID=MsG0880047578.01.T01:exon:34863;Parent=MsG0880047578.01.T01
Chr8 exon 88275582 88275674 88275582 ID=MsG0880047578.01.T01:exon:34862;Parent=MsG0880047578.01.T01
Chr8 exon 88275767 88275839 88275767 ID=MsG0880047578.01.T01:exon:34861;Parent=MsG0880047578.01.T01
Chr8 exon 88276599 88276632 88276599 ID=MsG0880047578.01.T01:exon:34860;Parent=MsG0880047578.01.T01
Chr8 exon 88276738 88276793 88276738 ID=MsG0880047578.01.T01:exon:34859;Parent=MsG0880047578.01.T01
Chr8 exon 88278027 88278079 88278027 ID=MsG0880047578.01.T01:exon:34858;Parent=MsG0880047578.01.T01
Chr8 exon 88278484 88278583 88278484 ID=MsG0880047578.01.T01:exon:34857;Parent=MsG0880047578.01.T01
Chr8 exon 88278676 88278995 88278676 ID=MsG0880047578.01.T01:exon:34856;Parent=MsG0880047578.01.T01
Chr8 five_prime_UTR 88278927 88278995 88278927 ID=MsG0880047578.01.T01:five_prime_utr;Parent=MsG0880047578.01.T01
Chr8 CDS 88278676 88278926 88278676 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88278484 88278583 88278484 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88278027 88278079 88278027 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88276738 88276793 88276738 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88276599 88276632 88276599 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88275767 88275839 88275767 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88275582 88275674 88275582 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 CDS 88275131 88275271 88275131 ID=MsG0880047578.01.T01:cds;Parent=MsG0880047578.01.T01
Chr8 three_prime_UTR 88274707 88275130 88274707 ID=MsG0880047578.01.T01:three_prime_utr;Parent=MsG0880047578.01.T01
Gene Sequence

>MsG0880047578.01.T01

ATGGCTGGCATTACCACCACCACCGTCGTTCCCGTTAAACTCAAAGCCTCGCATCTATTCTCTAATAAACTATCTATTCCTCATTCCCTCAATTTTCAATCTTCTCCCTCATTCACTCTTCCTTCCCACGCAACCGTTCGTTACGGTGTTAACCTCCGTCCTTCCGCCTACGGTGGCGGTGGCAACTTCAGAAGACCTCCTCCTAACAAAGATGCTGACGATGAACAAGCTCTCGACCTCTCCAAACTTAGGTCGAATACCGTTAGGCTTATTGATCAGAGTCAGAATATGGTTGGAGTAGTATCTCTTGATCAGGCAATTCGAATGGCTGAAGATGCTGAACTTGATTTGGTAATAGTATCTGCAGAGGCAGATCCTCCTGTTGTTAGAATAATGAATTACAGTAAATATAGATATGAACTGCAGAAGAAGAAAAGAGATCAGCAGAAGAAAAGTGCTGCTAGTCGGATGGATTTGAAGGAGCTCAAAATGGGATACAACATAGATCAACATGATTATTCTGTACGTTTGAAAGCTGCACGGAAATTTTTGAATGATGGTGACAAGGTTAAGGTCATAGTAAACCTTAAAGGTCGTGAAAAAGAATTCAGGAATAATGCTATTGAGCTTATTAGACGTTTTCAGAACGATGTTGGGAAGCTTGCAACAGAGGAGGCTAAAAACTTCCGTGACAAAAACATCTTCATAACTTTGATTCCAAATAAAACTGAAGTGCAGAAACCTCAAGAAACACCAAAGAAAGCTGCAGAAGATGAAGTCTCGGTCAGTGTCGAAGCATAG

Protein sequence

>MsG0880047578.01.T01

MAGITTTTVVPVKLKASHLFSNKLSIPHSLNFQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRPPPNKDADDEQALDLSKLRSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPKKAAEDEVSVSVEA*