AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022799.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022799.01.T01 MTR_4g096900 85.037 401 21 3 1 372 1 391 0.0 650
MsG0480022799.01.T01 MTR_4g096900 74.687 399 11 3 1 372 1 336 0.0 542
MsG0480022799.01.T01 MTR_5g093570 65.185 405 87 6 1 372 1 384 4.54e-174 489
MsG0480022799.01.T01 MTR_5g093570 61.672 287 72 6 1 270 1 266 1.37e-102 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022799.01.T01 AT3G20330 60.741 405 111 4 1 372 1 390 9.50e-164 464
MsG0480022799.01.T01 AT3G20330 60.741 405 111 4 1 372 1 390 9.50e-164 464

Find 74 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCTAAAATCTGGCTTTC+AGG 0.121468 4:-76786052 None:intergenic
GTGCAAGCAATTTGTCAAAA+TGG 0.150202 4:+76785867 MsG0480022799.01.T01:CDS
CCGAATATATAAACCATATT+TGG 0.195568 4:-76787806 None:intergenic
ATACTTTCTAATCTTATAAT+AGG 0.217570 4:+76787973 MsG0480022799.01.T01:three_prime_UTR
CTTAATTATTACTATCAAAA+AGG 0.247468 4:-76784680 None:intergenic
CCAAATATGGTTTATATATT+CGG 0.263369 4:+76787806 MsG0480022799.01.T01:CDS
GAACACTACTCAGGCACTTT+TGG 0.269298 4:+76787002 MsG0480022799.01.T01:CDS
AGCAATTGCTGCAGCTCTTC+TGG 0.272850 4:-76786376 None:intergenic
TACTTTAGGCAAGCCAAATA+TGG 0.291184 4:+76787793 MsG0480022799.01.T01:CDS
TCATAGCAAAATCTCCTATA+TGG 0.296582 4:+76785802 MsG0480022799.01.T01:CDS
AGAAGAGCTGCAGCAATTGC+TGG 0.326750 4:+76786378 MsG0480022799.01.T01:CDS
AATGGATTCTATCTCTTTGC+CGG 0.348065 4:-76785907 None:intergenic
AGTAGAGGGCTCATAAAATA+AGG 0.365049 4:-76786089 None:intergenic
ATGCAAGGGCTGCTTACTTT+AGG 0.367672 4:+76787779 MsG0480022799.01.T01:CDS
TCAGGTTTGAACTGCAAAAC+TGG 0.382327 4:-76784759 None:intergenic
GGAAGAAAGTTCTGATTTAG+TGG 0.385877 4:+76787460 MsG0480022799.01.T01:CDS
AAGCTTGATGGTATTAAAGT+TGG 0.388302 4:+76787054 MsG0480022799.01.T01:CDS
AGGGTTGGTTTCTTCTTCAA+TGG 0.398343 4:+76785691 MsG0480022799.01.T01:intron
TATACAATTGAAAGAGAGAT+TGG 0.400447 4:+76787030 MsG0480022799.01.T01:CDS
GGTATTAAAGTTGGGCTTGT+TGG 0.405372 4:+76787063 MsG0480022799.01.T01:CDS
TGCAAGCAATTTGTCAAAAT+GGG 0.420727 4:+76785868 MsG0480022799.01.T01:CDS
TAAGATAACCCTCTAAAATC+TGG 0.421989 4:-76786060 None:intergenic
GACATCAGAAGGAGTGGATT+GGG 0.425793 4:+76787439 MsG0480022799.01.T01:CDS
AGCTTGATGGTATTAAAGTT+GGG 0.431447 4:+76787055 MsG0480022799.01.T01:CDS
GTTTCAGTGGCAGTGCAGTC+AGG 0.456748 4:-76784777 None:intergenic
ATGCTTACTTCGTCAAGTCT+TGG 0.461945 4:-76787641 None:intergenic
AGAGAGATTGGAAAGCTTGA+TGG 0.470401 4:+76787042 MsG0480022799.01.T01:CDS
GCTAAAGGAGAAACGCTTGA+AGG 0.475394 4:+76786199 MsG0480022799.01.T01:CDS
ACCTGTGTCAGATGTTGTCC+AGG 0.477489 4:-76786429 None:intergenic
AAGTTCTGATTTAGTGGAAG+TGG 0.483767 4:+76787466 MsG0480022799.01.T01:CDS
CGAAAGTCTAGTTCTAGTAG+AGG 0.483999 4:-76786104 None:intergenic
CAACTCCATGTGCATTGAGC+AGG 0.484567 4:-76785735 None:intergenic
TGATTTAGTGGAAGTGGCCT+CGG 0.485909 4:+76787472 MsG0480022799.01.T01:CDS
TGACATCAGAAGGAGTGGAT+TGG 0.493820 4:+76787438 MsG0480022799.01.T01:CDS
GGCGTTCCAATAGTCAATGC+GGG 0.494144 4:+76786399 MsG0480022799.01.T01:CDS
TGATCGAACCGTCCGCCCAT+TGG 0.513888 4:-76787094 None:intergenic
CTTGTTGGAGACCTAGCCAA+TGG 0.523709 4:+76787078 MsG0480022799.01.T01:CDS
CTGCACTGCCACTGAAACAC+AGG 0.525690 4:+76784782 MsG0480022799.01.T01:five_prime_UTR
ATGTGACAACCAAAAGCAAA+AGG 0.527464 4:-76787919 None:intergenic
AAAGACTATTTGACATCAGA+AGG 0.528017 4:+76787428 MsG0480022799.01.T01:CDS
CTTCTCCTGCTCAATGCACA+TGG 0.528967 4:+76785730 MsG0480022799.01.T01:CDS
GAACCGTCCGCCCATTGGCT+AGG 0.531689 4:-76787089 None:intergenic
TGGATGTTGACGCTGATGCA+AGG 0.535900 4:+76787764 MsG0480022799.01.T01:CDS
ATCAAATTATAAGTATAAGA+AGG 0.537090 4:-76784632 None:intergenic
TTGTTGGAGACCTAGCCAAT+GGG 0.551661 4:+76787079 MsG0480022799.01.T01:CDS
CTATTTGACATCAGAAGGAG+TGG 0.562247 4:+76787433 MsG0480022799.01.T01:CDS
ACTTCGTCAAGTCTTGGAAG+AGG 0.562949 4:-76787635 None:intergenic
GATACAATAAGAACAGTTGA+GGG 0.568220 4:+76786309 MsG0480022799.01.T01:intron
TCTGCCCCTCTGAAAAGCAA+TGG 0.569434 4:-76785925 None:intergenic
ATATGGTTTATATATTCGGA+TGG 0.577869 4:+76787810 MsG0480022799.01.T01:CDS
GTGCTTCGACACTTTGAAAG+TGG 0.579532 4:+76786348 MsG0480022799.01.T01:CDS
CTTCGTCAAGTCTTGGAAGA+GGG 0.584979 4:-76787634 None:intergenic
AGATACAATAAGAACAGTTG+AGG 0.586714 4:+76786308 MsG0480022799.01.T01:intron
GGCGATGCAAAGACATGCCG+TGG 0.595306 4:+76787604 MsG0480022799.01.T01:CDS
GAGTCTGCTATGAGAAGAGT+GGG 0.608843 4:+76786130 MsG0480022799.01.T01:CDS
GGATGTTGACGCTGATGCAA+GGG 0.612635 4:+76787765 MsG0480022799.01.T01:CDS
TGTGAATCAGAATATTCTCA+AGG 0.617585 4:+76787583 MsG0480022799.01.T01:CDS
TTGGTGTACCTGTGTTTCAG+TGG 0.618005 4:-76784790 None:intergenic
TGAAACTCTTGCTTGTTGGG+TGG 0.621861 4:+76787839 MsG0480022799.01.T01:CDS
AAGCGTTTCTCCTTTAGCCG+CGG 0.623568 4:-76786194 None:intergenic
GCGTTCCAATAGTCAATGCG+GGG 0.634493 4:+76786400 MsG0480022799.01.T01:CDS
AGACCTAGCCAATGGGCGGA+CGG 0.635788 4:+76787086 MsG0480022799.01.T01:CDS
TGGCGTTCCAATAGTCAATG+CGG 0.643059 4:+76786398 MsG0480022799.01.T01:CDS
GAAAGTCTAGTTCTAGTAGA+GGG 0.643557 4:-76786103 None:intergenic
TGAGTCTGCTATGAGAAGAG+TGG 0.656261 4:+76786129 MsG0480022799.01.T01:CDS
TGGAAGAGGGTGCATAACCA+CGG 0.659443 4:-76787621 None:intergenic
TATGAGAAGAGTGGGTGGAG+AGG 0.661810 4:+76786138 MsG0480022799.01.T01:CDS
TTGGAGACCTAGCCAATGGG+CGG 0.679245 4:+76787082 MsG0480022799.01.T01:CDS
TCCTGGACAACATCTGACAC+AGG 0.683622 4:+76786428 MsG0480022799.01.T01:CDS
CGTTCCAATAGTCAATGCGG+GGG 0.688550 4:+76786401 MsG0480022799.01.T01:CDS
TCTGCTATGAGAAGAGTGGG+TGG 0.689707 4:+76786133 MsG0480022799.01.T01:CDS
ATAAACCACGTCACACTCCG+AGG 0.690679 4:-76787489 None:intergenic
AGTGGCCTCGGAGTGTGACG+TGG 0.692222 4:+76787484 MsG0480022799.01.T01:CDS
TGACAACCAAAAGCAAAAGG+AGG 0.701165 4:-76787916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGATTGAATAAAATGT+AGG + Chr4:76786542-76786561 MsG0480022799.01.T01:intron 15.0%
!! ATACTTTCTAATCTTATAAT+AGG + Chr4:76787973-76787992 MsG0480022799.01.T01:three_prime_UTR 15.0%
!! ATCAAATTATAAGTATAAGA+AGG - Chr4:76784635-76784654 None:intergenic 15.0%
!! CTAATGATATTTACATTTAT+AGG + Chr4:76787397-76787416 MsG0480022799.01.T01:intron 15.0%
!! CTTAATTATTACTATCAAAA+AGG - Chr4:76784683-76784702 None:intergenic 15.0%
!! TTATTAATAGCTTATTAAAG+TGG - Chr4:76786841-76786860 None:intergenic 15.0%
!!! TGAAATTTTCATCAAATTTT+GGG - Chr4:76786708-76786727 None:intergenic 15.0%
!!! TTGAAATTTTCATCAAATTT+TGG - Chr4:76786709-76786728 None:intergenic 15.0%
!! AACATCAAACTTGAAATTAA+GGG - Chr4:76786249-76786268 None:intergenic 20.0%
!! ACAAAAAAGACAAGTATTAA+AGG - Chr4:76787945-76787964 None:intergenic 20.0%
!! AGATATTATAATCCAAAACA+CGG - Chr4:76786496-76786515 None:intergenic 20.0%
!! ATGTTAGTCGTAAATAATTA+TGG + Chr4:76786903-76786922 MsG0480022799.01.T01:intron 20.0%
!! CCAAATATGGTTTATATATT+CGG + Chr4:76787806-76787825 MsG0480022799.01.T01:CDS 20.0%
!! CCACAATAGAAATAAATATT+TGG + Chr4:76784864-76784883 MsG0480022799.01.T01:intron 20.0%
!! GTAAATAATTATGGGATAAA+GGG + Chr4:76786912-76786931 MsG0480022799.01.T01:intron 20.0%
!! TATTACTATCAAAAAGGAAA+GGG - Chr4:76784677-76784696 None:intergenic 20.0%
!! TCATGACAAAAATACTTATA+TGG - Chr4:76785010-76785029 None:intergenic 20.0%
!! TGTTAGTCGTAAATAATTAT+GGG + Chr4:76786904-76786923 MsG0480022799.01.T01:intron 20.0%
!! TTATTACTATCAAAAAGGAA+AGG - Chr4:76784678-76784697 None:intergenic 20.0%
!!! AAGATTAATTTGAGATTAAG+TGG + Chr4:76787281-76787300 MsG0480022799.01.T01:intron 20.0%
!!! CCAAATATTTATTTCTATTG+TGG - Chr4:76784867-76784886 None:intergenic 20.0%
!!! CTTTTAATATTTGCATTTCA+TGG - Chr4:76786766-76786785 None:intergenic 20.0%
!!! TACTAATACTATTTTGTCAT+GGG + Chr4:76784838-76784857 MsG0480022799.01.T01:intron 20.0%
!!! TGTTTTGGATTATAATATCT+TGG + Chr4:76786496-76786515 MsG0480022799.01.T01:intron 20.0%
!!! TTACTAATACTATTTTGTCA+TGG + Chr4:76784837-76784856 MsG0480022799.01.T01:intron 20.0%
!!! TTCTTTAAAGAATTTCATTG+TGG + Chr4:76786276-76786295 MsG0480022799.01.T01:intron 20.0%
! ATATGGTTTATATATTCGGA+TGG + Chr4:76787810-76787829 MsG0480022799.01.T01:CDS 25.0%
! ATTACTATCAAAAAGGAAAG+GGG - Chr4:76784676-76784695 None:intergenic 25.0%
! CAACATCAAACTTGAAATTA+AGG - Chr4:76786250-76786269 None:intergenic 25.0%
! CCGAATATATAAACCATATT+TGG - Chr4:76787809-76787828 None:intergenic 25.0%
! CGTAAATAATTATGGGATAA+AGG + Chr4:76786911-76786930 MsG0480022799.01.T01:intron 25.0%
! CTTATATGGTCAAAATCATT+TGG - Chr4:76784996-76785015 None:intergenic 25.0%
! GATATTATAATCCAAAACAC+GGG - Chr4:76786495-76786514 None:intergenic 25.0%
! GCACATAAAAATCTAGAAAT+AGG - Chr4:76785851-76785870 None:intergenic 25.0%
! TAACACAAGTATATACATTC+TGG + Chr4:76786660-76786679 MsG0480022799.01.T01:intron 25.0%
! TAATAGCTTATTAAAGTGGA+TGG - Chr4:76786837-76786856 None:intergenic 25.0%
! TATACAATTGAAAGAGAGAT+TGG + Chr4:76787030-76787049 MsG0480022799.01.T01:CDS 25.0%
! TTCAAAAACATCAAACATGA+GGG + Chr4:76786724-76786743 MsG0480022799.01.T01:intron 25.0%
! TTGCATTGAAAAGATAGATT+TGG - Chr4:76784812-76784831 None:intergenic 25.0%
! TTTCAAAAACATCAAACATG+AGG + Chr4:76786723-76786742 MsG0480022799.01.T01:intron 25.0%
!! AATTTTCATCAAATTTTGGG+TGG - Chr4:76786705-76786724 None:intergenic 25.0%
!! ATAGTAAGATTGTTTTCAAC+AGG + Chr4:76788086-76788105 MsG0480022799.01.T01:three_prime_UTR 25.0%
!! TAAATCTTTTTACAAACTGC+AGG - Chr4:76788022-76788041 None:intergenic 25.0%
!! TATGTTTGAGATTTATGAGT+AGG + Chr4:76787229-76787248 MsG0480022799.01.T01:intron 25.0%
!! TGATTTTATAGGTTCCATAT+AGG - Chr4:76785819-76785838 None:intergenic 25.0%
!!! AAATGGTAATGTGTGTTTTT+TGG + Chr4:76785172-76785191 MsG0480022799.01.T01:intron 25.0%
!!! ATAGAGCATTTTGATATCTT+CGG - Chr4:76785767-76785786 None:intergenic 25.0%
!!! CAACTAGAAGTTTTGAAAAA+TGG - Chr4:76786616-76786635 None:intergenic 25.0%
AAAGACTATTTGACATCAGA+AGG + Chr4:76787428-76787447 MsG0480022799.01.T01:CDS 30.0%
AATTCTATCCTTGAAACTTC+TGG - Chr4:76785201-76785220 None:intergenic 30.0%
AGATACAATAAGAACAGTTG+AGG + Chr4:76786308-76786327 MsG0480022799.01.T01:intron 30.0%
AGTTGTAAATCACGTAAACT+CGG - Chr4:76787717-76787736 None:intergenic 30.0%
CGTATTCAAAAAGAACGATT+TGG + Chr4:76787518-76787537 MsG0480022799.01.T01:CDS 30.0%
GACAATGTGTTTAAAAGTGA+GGG - Chr4:76785638-76785657 None:intergenic 30.0%
GATACAATAAGAACAGTTGA+GGG + Chr4:76786309-76786328 MsG0480022799.01.T01:intron 30.0%
GCATGAAAAATCTTGAATCA+TGG + Chr4:76785119-76785138 MsG0480022799.01.T01:intron 30.0%
GTTTACGTGATTTACAACTT+TGG + Chr4:76787718-76787737 MsG0480022799.01.T01:intron 30.0%
GTTTATGTATAGTTCGTATC+AGG + Chr4:76785073-76785092 MsG0480022799.01.T01:intron 30.0%
TAGGTCATAAATTGTTTGGA+GGG + Chr4:76785274-76785293 MsG0480022799.01.T01:intron 30.0%
TCATAGCAAAATCTCCTATA+TGG + Chr4:76785802-76785821 MsG0480022799.01.T01:CDS 30.0%
TGACAATGTGTTTAAAAGTG+AGG - Chr4:76785639-76785658 None:intergenic 30.0%
TGCAAGCAATTTGTCAAAAT+GGG + Chr4:76785868-76785887 MsG0480022799.01.T01:CDS 30.0%
TGTCTAGGTCATAAATTGTT+TGG + Chr4:76785270-76785289 MsG0480022799.01.T01:intron 30.0%
TGTGAATCAGAATATTCTCA+AGG + Chr4:76787583-76787602 MsG0480022799.01.T01:CDS 30.0%
TGTGGTAAAAATGAAGGTAA+TGG + Chr4:76787178-76787197 MsG0480022799.01.T01:intron 30.0%
! AAATGGTGTCAAAGTAAAAC+TGG - Chr4:76785535-76785554 None:intergenic 30.0%
! AAGCTTGATGGTATTAAAGT+TGG + Chr4:76787054-76787073 MsG0480022799.01.T01:CDS 30.0%
! ACAAGTTCAAGCTAACATTT+TGG - Chr4:76786976-76786995 None:intergenic 30.0%
! AGCTTGATGGTATTAAAGTT+GGG + Chr4:76787055-76787074 MsG0480022799.01.T01:CDS 30.0%
! CAAAACTTCTAGTTGTATCA+CGG + Chr4:76786621-76786640 MsG0480022799.01.T01:intron 30.0%
! CACAATTTCTAAAAAGGGAA+AGG - Chr4:76785567-76785586 None:intergenic 30.0%
! CCAACCACAATTTCTAAAAA+GGG - Chr4:76785572-76785591 None:intergenic 30.0%
! TAATACTATTTTGTCATGGG+TGG + Chr4:76784841-76784860 MsG0480022799.01.T01:intron 30.0%
! TAGGTTTTACAATGAGAAAG+AGG + Chr4:76787992-76788011 MsG0480022799.01.T01:three_prime_UTR 30.0%
! TTCTTGCTTTATTGATGTCT+AGG + Chr4:76785255-76785274 MsG0480022799.01.T01:intron 30.0%
!! CCTTTTTAGAAATTGTGGTT+GGG + Chr4:76785570-76785589 MsG0480022799.01.T01:intron 30.0%
!! CTTTCCCTTTTTAGAAATTG+TGG + Chr4:76785565-76785584 MsG0480022799.01.T01:intron 30.0%
!! TAAGATAACCCTCTAAAATC+TGG - Chr4:76786063-76786082 None:intergenic 30.0%
!! TCACTTTTAAACACATTGTC+AGG + Chr4:76785638-76785657 MsG0480022799.01.T01:intron 30.0%
!! TGTATTTTTGAACACTACTC+AGG + Chr4:76786993-76787012 MsG0480022799.01.T01:CDS 30.0%
!!! ATTTTGAAACTCTTGCTTGT+TGG + Chr4:76787835-76787854 MsG0480022799.01.T01:CDS 30.0%
!!! GGATAGCATGTTGATTTTAT+AGG - Chr4:76785830-76785849 None:intergenic 30.0%
!!! GTATTGTTGTGGTTTTAGAA+TGG + Chr4:76785147-76785166 MsG0480022799.01.T01:intron 30.0%
!!! TTTTGAAACTCTTGCTTGTT+GGG + Chr4:76787836-76787855 MsG0480022799.01.T01:CDS 30.0%
AGTAGAGGGCTCATAAAATA+AGG - Chr4:76786092-76786111 None:intergenic 35.0%
ATGTGACAACCAAAAGCAAA+AGG - Chr4:76787922-76787941 None:intergenic 35.0%
CATGAGGGAGATCAAAATAA+AGG + Chr4:76786739-76786758 MsG0480022799.01.T01:intron 35.0%
CTAGGTCATAAATTGTTTGG+AGG + Chr4:76785273-76785292 MsG0480022799.01.T01:intron 35.0%
GACCTTTATGAAAAAGCTAG+AGG + Chr4:76787551-76787570 MsG0480022799.01.T01:CDS 35.0%
GGGAAAGGAAAGTTTCAAAA+TGG - Chr4:76785552-76785571 None:intergenic 35.0%
GGGACAAAGTGAAAAAATTC+CGG + Chr4:76785888-76785907 MsG0480022799.01.T01:CDS 35.0%
GTCATGATTGTGACCAAATA+TGG + Chr4:76785023-76785042 MsG0480022799.01.T01:intron 35.0%
GTGCAAGCAATTTGTCAAAA+TGG + Chr4:76785867-76785886 MsG0480022799.01.T01:CDS 35.0%
TACTTTAGGCAAGCCAAATA+TGG + Chr4:76787793-76787812 MsG0480022799.01.T01:CDS 35.0%
TCCAGATGTGGTAAAAATGA+AGG + Chr4:76787172-76787191 MsG0480022799.01.T01:intron 35.0%
TGTATAGTTCGTATCAGGAT+CGG + Chr4:76785078-76785097 MsG0480022799.01.T01:intron 35.0%
TTGAGATTTATGAGTAGGCT+TGG + Chr4:76787234-76787253 MsG0480022799.01.T01:intron 35.0%
! AAGTTCTGATTTAGTGGAAG+TGG + Chr4:76787466-76787485 MsG0480022799.01.T01:CDS 35.0%
! AATGGATTCTATCTCTTTGC+CGG - Chr4:76785910-76785929 None:intergenic 35.0%
! ATTGTACCTCCTTTTGCTTT+TGG + Chr4:76787910-76787929 MsG0480022799.01.T01:three_prime_UTR 35.0%
! CCCAACCACAATTTCTAAAA+AGG - Chr4:76785573-76785592 None:intergenic 35.0%
! CTGCAAGATGAAACTGATTT+AGG + Chr4:76786570-76786589 MsG0480022799.01.T01:intron 35.0%
! GCATTAGAGCATTCAAGTAA+AGG - Chr4:76785423-76785442 None:intergenic 35.0%
! GGAAGAAAGTTCTGATTTAG+TGG + Chr4:76787460-76787479 MsG0480022799.01.T01:CDS 35.0%
! TCATGGTTTGAGTATTGTTG+TGG + Chr4:76785136-76785155 MsG0480022799.01.T01:intron 35.0%
!! ACCTTCATTTTTACCACATC+TGG - Chr4:76787176-76787195 None:intergenic 35.0%
!! ACTGGAAAGCATTCAAGTAA+AGG - Chr4:76785517-76785536 None:intergenic 35.0%
!! AGAATCCATTGCTTTTCAGA+GGG + Chr4:76785920-76785939 MsG0480022799.01.T01:CDS 35.0%
!! CCCTTTTTAGAAATTGTGGT+TGG + Chr4:76785569-76785588 MsG0480022799.01.T01:intron 35.0%
!! GAAAGTCTAGTTCTAGTAGA+GGG - Chr4:76786106-76786125 None:intergenic 35.0%
!! GCATTTTGAAGATGAATTGC+AGG - Chr4:76787869-76787888 None:intergenic 35.0%
!! TAGAATCCATTGCTTTTCAG+AGG + Chr4:76785919-76785938 MsG0480022799.01.T01:CDS 35.0%
!! TTATTTTGTCTCTCCAGATG+TGG + Chr4:76787160-76787179 MsG0480022799.01.T01:intron 35.0%
!!! TATTTTGATGCAGATCACTG+TGG + Chr4:76787744-76787763 MsG0480022799.01.T01:intron 35.0%
!!! TGCCTCTAGCTTTTTCATAA+AGG - Chr4:76787556-76787575 None:intergenic 35.0%
AAACATTTGACCAAGCGCAA+AGG - Chr4:76786883-76786902 None:intergenic 40.0%
AATCCAAAACACGGGAACTT+TGG - Chr4:76786487-76786506 None:intergenic 40.0%
ACTTTGCAAGCAAGTCAAGT+AGG - Chr4:76787124-76787143 None:intergenic 40.0%
AGAGAGATTGGAAAGCTTGA+TGG + Chr4:76787042-76787061 MsG0480022799.01.T01:CDS 40.0%
ATAACACAACCCCACAAAAC+CGG + Chr4:76785594-76785613 MsG0480022799.01.T01:intron 40.0%
ATGCTTACTTCGTCAAGTCT+TGG - Chr4:76787644-76787663 None:intergenic 40.0%
CTATTTGACATCAGAAGGAG+TGG + Chr4:76787433-76787452 MsG0480022799.01.T01:CDS 40.0%
CTGATGCAGAGACAATTTGT+GGG + Chr4:76785223-76785242 MsG0480022799.01.T01:intron 40.0%
GGCTTTCTCAAACTCATTTG+TGG + Chr4:76785295-76785314 MsG0480022799.01.T01:intron 40.0%
GGTATTAAAGTTGGGCTTGT+TGG + Chr4:76787063-76787082 MsG0480022799.01.T01:CDS 40.0%
GTATCAGGATCGGACAAAAT+TGG + Chr4:76785088-76785107 MsG0480022799.01.T01:intron 40.0%
TCACGCAGTTACTCCATATT+TGG - Chr4:76785039-76785058 None:intergenic 40.0%
TCAGGTTTGAACTGCAAAAC+TGG - Chr4:76784762-76784781 None:intergenic 40.0%
TCTGATGCAGAGACAATTTG+TGG + Chr4:76785222-76785241 MsG0480022799.01.T01:intron 40.0%
TGACAACCAAAAGCAAAAGG+AGG - Chr4:76787919-76787938 None:intergenic 40.0%
TGTGCGTTAGCGATACAAAT+GGG - Chr4:76787363-76787382 None:intergenic 40.0%
TTGTGCGTTAGCGATACAAA+TGG - Chr4:76787364-76787383 None:intergenic 40.0%
TTTGGTTGCCAGAAGTTTCA+AGG + Chr4:76785190-76785209 MsG0480022799.01.T01:intron 40.0%
! ATCGCGCGCAACTTTAAAAA+TGG - Chr4:76786008-76786027 None:intergenic 40.0%
! CAAAGGATGAATGAGGGTAT+TGG - Chr4:76786866-76786885 None:intergenic 40.0%
! CCTGAAAGCCAGATTTTAGA+GGG + Chr4:76786052-76786071 MsG0480022799.01.T01:CDS 40.0%
! TCAAATGTTGTGACTTGTGC+AGG + Chr4:76787670-76787689 MsG0480022799.01.T01:intron 40.0%
! TCCTGAAAGCCAGATTTTAG+AGG + Chr4:76786051-76786070 MsG0480022799.01.T01:CDS 40.0%
!! AGGGTTGGTTTCTTCTTCAA+TGG + Chr4:76785691-76785710 MsG0480022799.01.T01:intron 40.0%
!! CGAAAGTCTAGTTCTAGTAG+AGG - Chr4:76786107-76786126 None:intergenic 40.0%
!! GAATCCATTGCTTTTCAGAG+GGG + Chr4:76785921-76785940 MsG0480022799.01.T01:CDS 40.0%
!! GCTTGGTGTGAGAAAAGAAT+TGG + Chr4:76787251-76787270 MsG0480022799.01.T01:intron 40.0%
!! TGACTTGCTTGCAAAGTACA+AGG + Chr4:76787127-76787146 MsG0480022799.01.T01:intron 40.0%
!! TTGTTTCTGCTATGCTTGCT+TGG + Chr4:76786801-76786820 MsG0480022799.01.T01:intron 40.0%
!!! GTGGTTTTAGAATGGCGAAA+TGG + Chr4:76785155-76785174 MsG0480022799.01.T01:intron 40.0%
!!! TTTTAAAGTTGCGCGCGATA+TGG + Chr4:76786009-76786028 MsG0480022799.01.T01:CDS 40.0%
ACTTCGTCAAGTCTTGGAAG+AGG - Chr4:76787638-76787657 None:intergenic 45.0%
ATGCAAGGGCTGCTTACTTT+AGG + Chr4:76787779-76787798 MsG0480022799.01.T01:CDS 45.0%
CAAGCGCAAAGGATGAATGA+GGG - Chr4:76786872-76786891 None:intergenic 45.0%
CGTTAGCGATACAAATGGGA+AGG - Chr4:76787359-76787378 None:intergenic 45.0%
CTTCGTCAAGTCTTGGAAGA+GGG - Chr4:76787637-76787656 None:intergenic 45.0%
GAGTCTGCTATGAGAAGAGT+GGG + Chr4:76786130-76786149 MsG0480022799.01.T01:CDS 45.0%
GCTAAAGGAGAAACGCTTGA+AGG + Chr4:76786199-76786218 MsG0480022799.01.T01:CDS 45.0%
GGTTGCAGTAGAATCCAACA+TGG - Chr4:76786466-76786485 None:intergenic 45.0%
GTATCGCTAACGCACAACAT+TGG + Chr4:76787367-76787386 MsG0480022799.01.T01:intron 45.0%
TGACATCAGAAGGAGTGGAT+TGG + Chr4:76787438-76787457 MsG0480022799.01.T01:CDS 45.0%
TGAGTCTGCTATGAGAAGAG+TGG + Chr4:76786129-76786148 MsG0480022799.01.T01:CDS 45.0%
TGATTTAGTGGAAGTGGCCT+CGG + Chr4:76787472-76787491 MsG0480022799.01.T01:CDS 45.0%
TGGCGTTCCAATAGTCAATG+CGG + Chr4:76786398-76786417 MsG0480022799.01.T01:CDS 45.0%
TTGGTGTACCTGTGTTTCAG+TGG - Chr4:76784793-76784812 None:intergenic 45.0%
TTGTTGGAGACCTAGCCAAT+GGG + Chr4:76787079-76787098 MsG0480022799.01.T01:CDS 45.0%
! CAACCAAAGTTCCCGTGTTT+TGG + Chr4:76786481-76786500 MsG0480022799.01.T01:intron 45.0%
! GAACACTACTCAGGCACTTT+TGG + Chr4:76787002-76787021 MsG0480022799.01.T01:CDS 45.0%
! GACATCAGAAGGAGTGGATT+GGG + Chr4:76787439-76787458 MsG0480022799.01.T01:CDS 45.0%
! GTGCTTCGACACTTTGAAAG+TGG + Chr4:76786348-76786367 MsG0480022799.01.T01:CDS 45.0%
! TGAAACTCTTGCTTGTTGGG+TGG + Chr4:76787839-76787858 MsG0480022799.01.T01:CDS 45.0%
! TGCTAGAGAATTTTCGTCCG+CGG + Chr4:76786177-76786196 MsG0480022799.01.T01:CDS 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - Chr4:76785670-76785689 None:intergenic 45.0%
!! CCCTCTAAAATCTGGCTTTC+AGG - Chr4:76786055-76786074 None:intergenic 45.0%
!! GGGTGGAGAGGTTTTAACAA+CGG + Chr4:76786150-76786169 MsG0480022799.01.T01:CDS 45.0%
!!! TAAAATAATTAAATGTATTT+TGG + Chr4:76784946-76784965 MsG0480022799.01.T01:intron 5.0%
AAGCGTTTCTCCTTTAGCCG+CGG - Chr4:76786197-76786216 None:intergenic 50.0%
ACCGATGTGGGACTCTTAAC+AGG + Chr4:76785671-76785690 MsG0480022799.01.T01:intron 50.0%
ACCTGTGTCAGATGTTGTCC+AGG - Chr4:76786432-76786451 None:intergenic 50.0%
AGAAGAGCTGCAGCAATTGC+TGG + Chr4:76786378-76786397 MsG0480022799.01.T01:CDS 50.0%
AGCAATTGCTGCAGCTCTTC+TGG - Chr4:76786379-76786398 None:intergenic 50.0%
ATAAACCACGTCACACTCCG+AGG - Chr4:76787492-76787511 None:intergenic 50.0%
CAACTCCATGTGCATTGAGC+AGG - Chr4:76785738-76785757 None:intergenic 50.0%
CCAAGCGCAAAGGATGAATG+AGG - Chr4:76786873-76786892 None:intergenic 50.0%
CCCTGTTAAGAGTCCCACAT+CGG - Chr4:76785675-76785694 None:intergenic 50.0%
CCGATGTGGGACTCTTAACA+GGG + Chr4:76785672-76785691 MsG0480022799.01.T01:intron 50.0%
CCTCATTCATCCTTTGCGCT+TGG + Chr4:76786870-76786889 MsG0480022799.01.T01:intron 50.0%
CGTTCCAATAGTCAATGCGG+GGG + Chr4:76786401-76786420 MsG0480022799.01.T01:CDS 50.0%
CTTCTCCTGCTCAATGCACA+TGG + Chr4:76785730-76785749 MsG0480022799.01.T01:CDS 50.0%
CTTGTTGGAGACCTAGCCAA+TGG + Chr4:76787078-76787097 MsG0480022799.01.T01:CDS 50.0%
GCGTTCCAATAGTCAATGCG+GGG + Chr4:76786400-76786419 MsG0480022799.01.T01:CDS 50.0%
GGACAACATCTGACACAGGT+AGG + Chr4:76786432-76786451 MsG0480022799.01.T01:intron 50.0%
GGATCGGACAAAATTGGCGA+CGG + Chr4:76785094-76785113 MsG0480022799.01.T01:intron 50.0%
GGATGTTGACGCTGATGCAA+GGG + Chr4:76787765-76787784 MsG0480022799.01.T01:CDS 50.0%
GGCGTTCCAATAGTCAATGC+GGG + Chr4:76786399-76786418 MsG0480022799.01.T01:CDS 50.0%
GGTAGGCATGCATTCCATGT+TGG + Chr4:76786449-76786468 MsG0480022799.01.T01:intron 50.0%
TATGAGAAGAGTGGGTGGAG+AGG + Chr4:76786138-76786157 MsG0480022799.01.T01:CDS 50.0%
TCCTGGACAACATCTGACAC+AGG + Chr4:76786428-76786447 MsG0480022799.01.T01:CDS 50.0%
TCTGCTATGAGAAGAGTGGG+TGG + Chr4:76786133-76786152 MsG0480022799.01.T01:CDS 50.0%
TGGATGTTGACGCTGATGCA+AGG + Chr4:76787764-76787783 MsG0480022799.01.T01:CDS 50.0%
TGTGGGACTCTTAACAGGGT+TGG + Chr4:76785676-76785695 MsG0480022799.01.T01:intron 50.0%
! GAATTTTCGTCCGCGGCTAA+AGG + Chr4:76786184-76786203 MsG0480022799.01.T01:CDS 50.0%
! TCTGCCCCTCTGAAAAGCAA+TGG - Chr4:76785928-76785947 None:intergenic 50.0%
! TGGAAGAGGGTGCATAACCA+CGG - Chr4:76787624-76787643 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - Chr4:76785607-76785626 None:intergenic 50.0%
AGGCCATCTCCTAACCGATG+TGG + Chr4:76785658-76785677 MsG0480022799.01.T01:intron 55.0%
CCAATAGTCAATGCGGGGGA+TGG + Chr4:76786405-76786424 MsG0480022799.01.T01:CDS 55.0%
CTGCACTGCCACTGAAACAC+AGG + Chr4:76784782-76784801 MsG0480022799.01.T01:five_prime_UTR 55.0%
GCAATCCTCACCTCACAAGC+CGG - Chr4:76785616-76785635 None:intergenic 55.0%
GGCCATCTCCTAACCGATGT+GGG + Chr4:76785659-76785678 MsG0480022799.01.T01:intron 55.0%
GTTTCAGTGGCAGTGCAGTC+AGG - Chr4:76784780-76784799 None:intergenic 55.0%
TTGGAGACCTAGCCAATGGG+CGG + Chr4:76787082-76787101 MsG0480022799.01.T01:CDS 55.0%
! GTCCCACATCGGTTAGGAGA+TGG - Chr4:76785664-76785683 None:intergenic 55.0%
! TGACTTGTGCAGGTCTCGCT+AGG + Chr4:76787680-76787699 MsG0480022799.01.T01:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + Chr4:76785608-76785627 MsG0480022799.01.T01:intron 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - Chr4:76785608-76785627 None:intergenic 55.0%
!! CCATCCCCCGCATTGACTAT+TGG - Chr4:76786408-76786427 None:intergenic 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - Chr4:76785606-76785625 None:intergenic 55.0%
AGACCTAGCCAATGGGCGGA+CGG + Chr4:76787086-76787105 MsG0480022799.01.T01:CDS 60.0%
GGCGATGCAAAGACATGCCG+TGG + Chr4:76787604-76787623 MsG0480022799.01.T01:CDS 60.0%
TGATCGAACCGTCCGCCCAT+TGG - Chr4:76787097-76787116 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + Chr4:76785603-76785622 MsG0480022799.01.T01:intron 60.0%
AGTGGCCTCGGAGTGTGACG+TGG + Chr4:76787484-76787503 MsG0480022799.01.T01:CDS 65.0%
GTCAATGCGGGGGATGGTCC+TGG + Chr4:76786411-76786430 MsG0480022799.01.T01:CDS 65.0%
TGGGCGGACGGTTCGATCAC+TGG + Chr4:76787098-76787117 MsG0480022799.01.T01:intron 65.0%
! GAACCGTCCGCCCATTGGCT+AGG - Chr4:76787092-76787111 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76784620 76788105 76784620 ID=MsG0480022799.01;Name=MsG0480022799.01
Chr4 mRNA 76784620 76788105 76784620 ID=MsG0480022799.01.T01;Parent=MsG0480022799.01;Name=MsG0480022799.01.T01;_AED=0.42;_eAED=0.43;_QI=201|0.6|0.66|1|0.8|0.66|6|241|372
Chr4 exon 76784620 76784803 76784620 ID=MsG0480022799.01.T01:exon:19823;Parent=MsG0480022799.01.T01
Chr4 exon 76785693 76786220 76785693 ID=MsG0480022799.01.T01:exon:19824;Parent=MsG0480022799.01.T01
Chr4 exon 76786310 76786449 76786310 ID=MsG0480022799.01.T01:exon:19825;Parent=MsG0480022799.01.T01
Chr4 exon 76786985 76787107 76786985 ID=MsG0480022799.01.T01:exon:19826;Parent=MsG0480022799.01.T01
Chr4 exon 76787419 76787655 76787419 ID=MsG0480022799.01.T01:exon:19827;Parent=MsG0480022799.01.T01
Chr4 exon 76787757 76788105 76787757 ID=MsG0480022799.01.T01:exon:19828;Parent=MsG0480022799.01.T01
Chr4 five_prime_UTR 76784620 76784803 76784620 ID=MsG0480022799.01.T01:five_prime_utr;Parent=MsG0480022799.01.T01
Chr4 five_prime_UTR 76785693 76785709 76785693 ID=MsG0480022799.01.T01:five_prime_utr;Parent=MsG0480022799.01.T01
Chr4 CDS 76785710 76786220 76785710 ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4 CDS 76786310 76786449 76786310 ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4 CDS 76786985 76787107 76786985 ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4 CDS 76787419 76787655 76787419 ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4 CDS 76787757 76787864 76787757 ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4 three_prime_UTR 76787865 76788105 76787865 ID=MsG0480022799.01.T01:three_prime_utr;Parent=MsG0480022799.01.T01
Gene Sequence

>MsG0480022799.01.T01

ATGGCTGCTTCATCTTCACTCTTCTCCTGCTCAATGCACATGGAGTTGTTTTCTCCGAAGATATCAAAATGCTCTATAGATTTTGTATGCTATCATAGCAAAATCTCCTATATGGAACCTATAAAATCAACATGCTATCCTATTTCTAGATTTTTATGTGCAAGCAATTTGTCAAAATGGGACAAAGTGAAAAAATTCCGGCAAAGAGATAGAATCCATTGCTTTTCAGAGGGGCAGAAATTTCAACTTGATGATGTTATTGAAGCTCAACAGTTTGATACAGATATTCTCAACGCCATTTTTAAAGTTGCGCGCGATATGGAGAATATTGAGAGAAATTCTCCTGAAAGCCAGATTTTAGAGGGTTATCTTATGTCTACCTTATTTTATGAGCCCTCTACTAGAACTAGACTTTCGTTTGAGTCTGCTATGAGAAGAGTGGGTGGAGAGGTTTTAACAACGGAAAATGCTAGAGAATTTTCGTCCGCGGCTAAAGGAGAAACGCTTGAAGATACAATAAGAACAGTTGAGGGTTACTCTGACTTAATTGTGCTTCGACACTTTGAAAGTGGTGCTGCCAGAAGAGCTGCAGCAATTGCTGGCGTTCCAATAGTCAATGCGGGGGATGGTCCTGGACAACATCTGACACAGCTTGAACTTGTATTTTTGAACACTACTCAGGCACTTTTGGATGTCTATACAATTGAAAGAGAGATTGGAAAGCTTGATGGTATTAAAGTTGGGCTTGTTGGAGACCTAGCCAATGGGCGGACGGACGATATAAAAGACTATTTGACATCAGAAGGAGTGGATTGGGAAGAAAGTTCTGATTTAGTGGAAGTGGCCTCGGAGTGTGACGTGGTTTATCATACTCGTATTCAAAAAGAACGATTTGGAGAAAGACTCGACCTTTATGAAAAAGCTAGAGGCAAGTATATTGTGAATCAGAATATTCTCAAGGCGATGCAAAGACATGCCGTGGTTATGCACCCTCTTCCAAGACTTGACGAAATCACTGTGGATGTTGACGCTGATGCAAGGGCTGCTTACTTTAGGCAAGCCAAATATGGTTTATATATTCGGATGGCTATTTTGAAACTCTTGCTTGTTGGGTGGTAA

Protein sequence

>MsG0480022799.01.T01

MAASSSLFSCSMHMELFSPKISKCSIDFVCYHSKISYMEPIKSTCYPISRFLCASNLSKWDKVKKFRQRDRIHCFSEGQKFQLDDVIEAQQFDTDILNAIFKVARDMENIERNSPESQILEGYLMSTLFYEPSTRTRLSFESAMRRVGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDLIVLRHFESGAARRAAAIAGVPIVNAGDGPGQHLTQLELVFLNTTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTDDIKDYLTSEGVDWEESSDLVEVASECDVVYHTRIQKERFGERLDLYEKARGKYIVNQNILKAMQRHAVVMHPLPRLDEITVDVDADARAAYFRQAKYGLYIRMAILKLLLVGW*