AlfalfaGEDB | MsG0480022799.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022799.01

KEGG: K00609
GO: GO:0004070 GO:0006207 GO:0006520 GO:0016597 GO:0016743
PFAM: PF00185 PF02729

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022799.01.T01	XP_003608512.2	85.037	401	21	3	1	372	1	391	0	650

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022799.01.T01	Q43087	79.8	401	36	4	1	372	1	385	0	636

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022799.01.T01	A0A1S2YH05	80.549	401	39	3	1	372	1	391	0.0	650

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048462.01	MsG0480022799.01	0.804082	2.562494e-49	1.309224e-46
MsG0080048618.01	MsG0480022799.01	0.802796	4.733478e-49	2.340020e-46
MsG0080048856.01	MsG0480022799.01	0.804394	2.205960e-49	1.136093e-46
MsG0180000091.01	MsG0480022799.01	0.803502	3.380726e-49	1.701770e-46
MsG0180000335.01	MsG0480022799.01	0.810791	9.671551e-51	5.885137e-48
MsG0180000470.01	MsG0480022799.01	0.823655	1.232306e-53	1.067698e-50
MsG0180000777.01	MsG0480022799.01	0.814186	1.751132e-51	1.167006e-48
MsG0180001063.01	MsG0480022799.01	0.828425	9.054892e-55	8.997078e-52
MsG0180002377.01	MsG0480022799.01	0.816498	5.360218e-52	3.804275e-49
MsG0180003669.01	MsG0480022799.01	0.801238	9.896421e-49	4.702404e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022799.01.T01	MTR_4g096900	85.037	401	21	3	1	372	1	391	0.0	650
MsG0480022799.01.T01	MTR_4g096900	74.687	399	11	3	1	372	1	336	0.0	542
MsG0480022799.01.T01	MTR_5g093570	65.185	405	87	6	1	372	1	384	4.54e-174	489
MsG0480022799.01.T01	MTR_5g093570	61.672	287	72	6	1	270	1	266	1.37e-102	304

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022799.01.T01	AT3G20330	60.741	405	111	4	1	372	1	390	9.50e-164	464
MsG0480022799.01.T01	AT3G20330	60.741	405	111	4	1	372	1	390	9.50e-164	464

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Find 74 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACTATTTGACATCAGA+AGG	0.528017	4:+76787428	MsG0480022799.01.T01:CDS
AAGCGTTTCTCCTTTAGCCG+CGG	0.623568	4:-76786194	None:intergenic
AAGCTTGATGGTATTAAAGT+TGG	0.388302	4:+76787054	MsG0480022799.01.T01:CDS
AAGTTCTGATTTAGTGGAAG+TGG	0.483767	4:+76787466	MsG0480022799.01.T01:CDS
AATGGATTCTATCTCTTTGC+CGG	0.348065	4:-76785907	None:intergenic
ACCTGTGTCAGATGTTGTCC+AGG	0.477489	4:-76786429	None:intergenic
ACTTCGTCAAGTCTTGGAAG+AGG	0.562949	4:-76787635	None:intergenic
AGAAGAGCTGCAGCAATTGC+TGG	0.326750	4:+76786378	MsG0480022799.01.T01:CDS
AGACCTAGCCAATGGGCGGA+CGG	0.635788	4:+76787086	MsG0480022799.01.T01:CDS
AGAGAGATTGGAAAGCTTGA+TGG	0.470401	4:+76787042	MsG0480022799.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACTATTTGACATCAGA+AGG	+	Chr4:76787428-76787447	MsG0480022799.01.T01:CDS	30.0%
AATTCTATCCTTGAAACTTC+TGG	-	Chr4:76785201-76785220	None:intergenic	30.0%
AGATACAATAAGAACAGTTG+AGG	+	Chr4:76786308-76786327	MsG0480022799.01.T01:intron	30.0%
AGTTGTAAATCACGTAAACT+CGG	-	Chr4:76787717-76787736	None:intergenic	30.0%
CGTATTCAAAAAGAACGATT+TGG	+	Chr4:76787518-76787537	MsG0480022799.01.T01:CDS	30.0%
GACAATGTGTTTAAAAGTGA+GGG	-	Chr4:76785638-76785657	None:intergenic	30.0%
GATACAATAAGAACAGTTGA+GGG	+	Chr4:76786309-76786328	MsG0480022799.01.T01:intron	30.0%
GCATGAAAAATCTTGAATCA+TGG	+	Chr4:76785119-76785138	MsG0480022799.01.T01:intron	30.0%
GTTTACGTGATTTACAACTT+TGG	+	Chr4:76787718-76787737	MsG0480022799.01.T01:intron	30.0%
GTTTATGTATAGTTCGTATC+AGG	+	Chr4:76785073-76785092	MsG0480022799.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	76784620	76788105	76784620	ID=MsG0480022799.01;Name=MsG0480022799.01
Chr4	mRNA	76784620	76788105	76784620	ID=MsG0480022799.01.T01;Parent=MsG0480022799.01;Name=MsG0480022799.01.T01;_AED=0.42;_eAED=0.43;_QI=201\|0.6\|0.66\|1\|0.8\|0.66\|6\|241\|372
Chr4	exon	76784620	76784803	76784620	ID=MsG0480022799.01.T01:exon:19823;Parent=MsG0480022799.01.T01
Chr4	exon	76785693	76786220	76785693	ID=MsG0480022799.01.T01:exon:19824;Parent=MsG0480022799.01.T01
Chr4	exon	76786310	76786449	76786310	ID=MsG0480022799.01.T01:exon:19825;Parent=MsG0480022799.01.T01
Chr4	exon	76786985	76787107	76786985	ID=MsG0480022799.01.T01:exon:19826;Parent=MsG0480022799.01.T01
Chr4	exon	76787419	76787655	76787419	ID=MsG0480022799.01.T01:exon:19827;Parent=MsG0480022799.01.T01
Chr4	exon	76787757	76788105	76787757	ID=MsG0480022799.01.T01:exon:19828;Parent=MsG0480022799.01.T01
Chr4	five_prime_UTR	76784620	76784803	76784620	ID=MsG0480022799.01.T01:five_prime_utr;Parent=MsG0480022799.01.T01
Chr4	five_prime_UTR	76785693	76785709	76785693	ID=MsG0480022799.01.T01:five_prime_utr;Parent=MsG0480022799.01.T01
Chr4	CDS	76785710	76786220	76785710	ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4	CDS	76786310	76786449	76786310	ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4	CDS	76786985	76787107	76786985	ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4	CDS	76787419	76787655	76787419	ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4	CDS	76787757	76787864	76787757	ID=MsG0480022799.01.T01:cds;Parent=MsG0480022799.01.T01
Chr4	three_prime_UTR	76787865	76788105	76787865	ID=MsG0480022799.01.T01:three_prime_utr;Parent=MsG0480022799.01.T01

Gene Sequence

>MsG0480022799.01.T01

ATGGCTGCTTCATCTTCACTCTTCTCCTGCTCAATGCACATGGAGTTGTTTTCTCCGAAGATATCAAAATGCTCTATAGATTTTGTATGCTATCATAGCAAAATCTCCTATATGGAACCTATAAAATCAACATGCTATCCTATTTCTAGATTTTTATGTGCAAGCAATTTGTCAAAATGGGACAAAGTGAAAAAATTCCGGCAAAGAGATAGAATCCATTGCTTTTCAGAGGGGCAGAAATTTCAACTTGATGATGTTATTGAAGCTCAACAGTTTGATACAGATATTCTCAACGCCATTTTTAAAGTTGCGCGCGATATGGAGAATATTGAGAGAAATTCTCCTGAAAGCCAGATTTTAGAGGGTTATCTTATGTCTACCTTATTTTATGAGCCCTCTACTAGAACTAGACTTTCGTTTGAGTCTGCTATGAGAAGAGTGGGTGGAGAGGTTTTAACAACGGAAAATGCTAGAGAATTTTCGTCCGCGGCTAAAGGAGAAACGCTTGAAGATACAATAAGAACAGTTGAGGGTTACTCTGACTTAATTGTGCTTCGACACTTTGAAAGTGGTGCTGCCAGAAGAGCTGCAGCAATTGCTGGCGTTCCAATAGTCAATGCGGGGGATGGTCCTGGACAACATCTGACACAGCTTGAACTTGTATTTTTGAACACTACTCAGGCACTTTTGGATGTCTATACAATTGAAAGAGAGATTGGAAAGCTTGATGGTATTAAAGTTGGGCTTGTTGGAGACCTAGCCAATGGGCGGACGGACGATATAAAAGACTATTTGACATCAGAAGGAGTGGATTGGGAAGAAAGTTCTGATTTAGTGGAAGTGGCCTCGGAGTGTGACGTGGTTTATCATACTCGTATTCAAAAAGAACGATTTGGAGAAAGACTCGACCTTTATGAAAAAGCTAGAGGCAAGTATATTGTGAATCAGAATATTCTCAAGGCGATGCAAAGACATGCCGTGGTTATGCACCCTCTTCCAAGACTTGACGAAATCACTGTGGATGTTGACGCTGATGCAAGGGCTGCTTACTTTAGGCAAGCCAAATATGGTTTATATATTCGGATGGCTATTTTGAAACTCTTGCTTGTTGGGTGGTAA

Protein sequence

>MsG0480022799.01.T01

MAASSSLFSCSMHMELFSPKISKCSIDFVCYHSKISYMEPIKSTCYPISRFLCASNLSKWDKVKKFRQRDRIHCFSEGQKFQLDDVIEAQQFDTDILNAIFKVARDMENIERNSPESQILEGYLMSTLFYEPSTRTRLSFESAMRRVGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDLIVLRHFESGAARRAAAIAGVPIVNAGDGPGQHLTQLELVFLNTTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTDDIKDYLTSEGVDWEESSDLVEVASECDVVYHTRIQKERFGERLDLYEKARGKYIVNQNILKAMQRHAVVMHPLPRLDEITVDVDADARAAYFRQAKYGLYIRMAILKLLLVGW*