AlfalfaGEDB | MsG0380017566.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017566.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017566.01.T01	XP_003603567.1	78.4	125	13	2	31	149	1	117	2.06E-54	177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017566.01.T01	G7J2U9	78.400	125	13	2	31	149	1	117	9.84e-55	177

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0380017566.01	-0.824864	6.405566e-54	5.744195e-51
MsG0080047967.01	MsG0380017566.01	0.841467	4.669612e-58	6.868038e-55
MsG0080048036.01	MsG0380017566.01	-0.820262	7.528489e-53	5.927861e-50
MsG0080048059.01	MsG0380017566.01	0.916163	2.478849e-85	6.725424e-81
MsG0080048202.01	MsG0380017566.01	-0.807609	4.649631e-50	2.601191e-47
MsG0080048560.01	MsG0380017566.01	0.829022	6.494121e-55	6.565261e-52
MsG0080048595.01	MsG0380017566.01	-0.822280	2.577758e-53	2.147947e-50
MsG0080048611.01	MsG0380017566.01	0.807707	4.431524e-50	2.485584e-47
MsG0080048694.01	MsG0380017566.01	0.827941	1.184495e-54	1.160411e-51
MsG0080048695.01	MsG0380017566.01	0.828786	7.406869e-55	7.436727e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017566.01.T01	MTR_3g109170	78.400	125	13	2	31	149	1	117	2.50e-58	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017566.01.T01	AT2G24395	56.122	98	41	2	49	146	32	127	6.51e-33	113

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Find 38 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTGCAATGGAAAAGGA+TGG	0.665276	3:-97944647	MsG0380017566.01.T01:CDS
AAGGACATCGACGGTAGATA+CGG	0.523630	3:+97944571	None:intergenic
ACGCATGCATGTGATTGTGA+GGG	0.722659	3:+97944304	None:intergenic
ACGGTAGATACGGTTGTTAG+GGG	0.651272	3:+97944581	None:intergenic
ACTGGTCGATCCATCGTGGG+AGG	0.649205	3:-97944853	MsG0380017566.01.T01:CDS
ATAGGAGAATCATTGAAATC+AGG	0.441700	3:+97944373	None:intergenic
ATCATGTGCAAACCTTGCAA+TGG	0.569752	3:-97944657	MsG0380017566.01.T01:CDS
ATTGAATTGAATTAATTAAT+AGG	0.255490	3:+97944355	None:intergenic
CACGCATGCATGTGATTGTG+AGG	0.632978	3:+97944303	None:intergenic
CATCACGATAAAGTGTGTGA+AGG	0.657024	3:-97944724	MsG0380017566.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGGAGAATCATTGAAATC+AGG	+	Chr3:97944701-97944720	None:intergenic	30.0%
GTATTCTACTCTACATACAT+TGG	+	Chr3:97944842-97944861	None:intergenic	30.0%
GTCTGTAACTGGAAATTGAA+GGG	+	Chr3:97944293-97944312	None:intergenic	35.0%
TCAAGTGAGCAGTTAAATGA+AGG	+	Chr3:97944868-97944887	None:intergenic	35.0%
TGTCTGTAACTGGAAATTGA+AGG	+	Chr3:97944294-97944313	None:intergenic	35.0%
AACCTTGCAATGGAAAAGGA+TGG	-	Chr3:97944424-97944443	MsG0380017566.01.T01:CDS	40.0%
ATCATGTGCAAACCTTGCAA+TGG	-	Chr3:97944414-97944433	MsG0380017566.01.T01:CDS	40.0%
CATCACGATAAAGTGTGTGA+AGG	-	Chr3:97944347-97944366	MsG0380017566.01.T01:exon	40.0%
GATAAGGAGGAGAAGAAATG+AGG	-	Chr3:97944167-97944186	MsG0380017566.01.T01:three_prime_UTR	40.0%
GTAACTGGAAATTGAAGGGA+GGG	+	Chr3:97944289-97944308	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	97944165	97944928	97944165	ID=MsG0380017566.01;Name=MsG0380017566.01
Chr3	mRNA	97944165	97944928	97944165	ID=MsG0380017566.01.T01;Parent=MsG0380017566.01;Name=MsG0380017566.01.T01;_AED=0.39;_eAED=0.46;_QI=0\|1\|0.5\|1\|0\|0\|2\|201\|149
Chr3	exon	97944165	97944446	97944165	ID=MsG0380017566.01.T01:exon:25851;Parent=MsG0380017566.01.T01
Chr3	exon	97944560	97944928	97944560	ID=MsG0380017566.01.T01:exon:25850;Parent=MsG0380017566.01.T01
Chr3	CDS	97944560	97944928	97944560	ID=MsG0380017566.01.T01:cds;Parent=MsG0380017566.01.T01
Chr3	CDS	97944366	97944446	97944366	ID=MsG0380017566.01.T01:cds;Parent=MsG0380017566.01.T01
Chr3	three_prime_UTR	97944165	97944365	97944165	ID=MsG0380017566.01.T01:three_prime_utr;Parent=MsG0380017566.01.T01

Gene Sequence

>MsG0380017566.01.T01

ATGATAAGGAGGAGAAGAAATGAGGAAGAACATCATGTCTTCTCGTTCACTCAACTGGTCGATCCATCGTGGGAGGAGAGAAGAGGATTAATGGCTGTTGCATTAACACCGTTTATTCTCACCCTCCCTTCAATTTCCAGTTACAGACACAGTCGTAGGCTTGGTATTGTTCATATTCGCAGCATCACGATAAAGTGTGTGAAGGTGAATACAGATACAGATACAGATACTGAATCATCAGCAACAAATATCATGTGCAAACCTTGCAATGGAAAAGGATGGTTGGTATGTGACTTTTGTGAAGGCCAAAAAACTAATGTCAAAGCCCCTAACAACCGTATCTACCGTCGATGTCCTTCCTGCAAAGCCGTTGGATATGTGTTGTGTTCAAACTGCAAGGTCTTCAAATGTGTCACTTTTCCTGATTTCAATGATTCTCCTATTAATTAA

Protein sequence

>MsG0380017566.01.T01

MIRRRRNEEEHHVFSFTQLVDPSWEERRGLMAVALTPFILTLPSISSYRHSRRLGIVHIRSITIKCVKVNTDTDTDTESSATNIMCKPCNGKGWLVCDFCEGQKTNVKAPNNRIYRRCPSCKAVGYVLCSNCKVFKCVTFPDFNDSPIN*