AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382400 MtrunA17_Chr4g0061301 96.139 518 11 4 1 511 1 516 0.0 1009
Msa1382400 MtrunA17_Chr3g0086331 38.322 441 188 16 1 395 27 429 8.48e-62 210
Msa1382400 MtrunA17_Chr3g0086331 33.333 159 66 4 386 512 341 491 1.35e-16 82.4
Msa1382400 MtrunA17_Chr4g0012791 38.889 162 74 5 343 483 224 381 7.31e-25 107
Msa1382400 MtrunA17_Chr4g0012791 25.707 389 205 13 4 368 6 334 1.70e-15 79.0
Msa1382400 MtrunA17_Chr7g0231181 37.278 169 63 4 329 492 218 348 1.06e-24 105
Msa1382400 MtrunA17_Chr4g0012691 39.355 155 53 6 343 482 217 345 6.60e-22 97.4
Msa1382400 MtrunA17_Chr5g0448611 46.903 113 47 5 345 452 129 233 2.77e-19 88.2
Msa1382400 MtrunA17_Chr5g0425411 45.045 111 36 5 345 452 118 206 6.74e-18 83.2
Msa1382400 MtrunA17_Chr1g0197281 35.897 156 77 7 346 485 156 304 1.75e-15 78.2
Msa1382400 MtrunA17_Chr4g0027991 38.462 156 77 4 346 485 113 265 6.28e-15 75.5
Msa1382400 MtrunA17_Chr1g0152661 40.000 145 52 7 346 484 81 196 2.15e-14 72.8
Msa1382400 MtrunA17_Chr2g0320311 34.682 173 68 6 346 489 129 285 2.32e-14 73.9
Msa1382400 MtrunA17_Chr1g0180311 33.333 186 88 8 328 486 94 270 6.39e-13 69.7
Msa1382400 MtrunA17_Chr4g0043071 50.000 58 27 1 430 485 441 498 2.20e-12 69.3
Msa1382400 MtrunA17_Chr1g0207451 41.509 106 26 4 347 452 84 153 2.65e-12 67.0
Msa1382400 MtrunA17_Chr4g0056091 36.923 130 55 5 384 488 181 308 3.29e-12 67.8
Msa1382400 MtrunA17_Chr3g0134711 34.028 144 57 5 347 481 87 201 7.00e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382400 AT2G45120.1 45.087 173 52 7 323 489 173 308 5.54e-30 120
Msa1382400 AT3G60580.1 44.218 147 44 6 343 486 170 281 9.77e-25 104
Msa1382400 AT1G02030.1 43.151 146 42 4 342 486 155 260 1.05e-21 95.1
Msa1382400 AT4G35280.1 39.865 148 49 4 345 489 161 271 1.76e-21 95.1
Msa1382400 AT2G17180.1 39.583 144 54 6 345 487 147 258 5.49e-18 84.7
Msa1382400 AT1G02040.1 38.514 148 76 4 346 487 150 288 7.55e-17 82.0
Msa1382400 AT2G28200.1 37.736 159 63 5 346 481 115 260 8.63e-16 78.2
Msa1382400 AT1G26610.1 55.385 65 27 2 422 485 392 455 4.22e-15 78.2
Msa1382400 AT5G03510.1 34.568 162 70 6 344 485 116 261 2.54e-14 73.9
Msa1382400 AT5G04390.1 43.119 109 50 5 346 452 153 251 1.02e-13 73.2
Msa1382400 AT3G19580.1 36.478 159 59 5 341 484 101 232 3.48e-13 70.5
Msa1382400 AT3G19580.2 36.478 159 59 5 341 484 101 232 3.48e-13 70.5
Msa1382400 AT5G67450.1 42.991 107 44 3 346 452 97 186 6.01e-13 69.3
Msa1382400 AT3G49930.1 34.559 136 53 4 346 481 94 193 2.94e-12 66.6
Msa1382400 AT5G56200.1 37.584 149 69 6 327 469 317 447 3.11e-12 69.3
Msa1382400 AT3G10470.1 37.383 107 62 2 346 452 182 283 2.06e-11 66.2

Find 64 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCTCCATGTCTTCTT+TGG 0.075353 tig0020515:+32618 None:intergenic
AGGGAAAAGTTTAGAGATTT+TGG 0.115530 tig0020515:-32076 Msa1382400:CDS
CCCTTTGAACTTCAAATTCT+TGG 0.126081 tig0020515:+32095 None:intergenic
CATTGAATATGTTCAAAATA+TGG 0.176266 tig0020515:-31617 Msa1382400:CDS
GAAGATTCAGAAGTTGAAAA+TGG 0.193847 tig0020515:-31958 Msa1382400:CDS
TGAGTGTCCAATTTGCTTTA+AGG 0.196640 tig0020515:-31551 Msa1382400:CDS
ATGCCCTTTAATCTTCTTCT+TGG 0.204703 tig0020515:+31576 None:intergenic
TTTCCTTGTGGTAGATCTTT+AGG 0.228997 tig0020515:-32783 Msa1382400:CDS
CTACAAGTGCCTCTTGATTA+TGG 0.245683 tig0020515:+31332 None:intergenic
ATGAGCTTGCTTTCAGTTGT+TGG 0.246397 tig0020515:+31655 None:intergenic
CACTCTTGGCAAGCTTTGTT+TGG 0.254693 tig0020515:-32528 Msa1382400:CDS
TCTTTCTCCATGTCTTCTTT+GGG 0.291035 tig0020515:+32619 None:intergenic
AGAAAGAGTTTCTAACAGTT+TGG 0.300359 tig0020515:-32481 Msa1382400:CDS
GATTCCAAGAAGAAGATTAA+AGG 0.330354 tig0020515:-31580 Msa1382400:CDS
GAGAACAAGAAGTGCGAGTT+AGG 0.355844 tig0020515:-32129 Msa1382400:CDS
GGAACAAGTTCCACAGATTA+GGG 0.363512 tig0020515:-31446 Msa1382400:CDS
TTTCAATCTGGTCAAGCCTT+AGG 0.371292 tig0020515:-31526 Msa1382400:CDS
TTTCATTCTTATCAAGCTCT+TGG 0.373280 tig0020515:-31778 Msa1382400:CDS
AGGAACAAGTTCCACAGATT+AGG 0.383607 tig0020515:-31447 Msa1382400:CDS
TATCAAAGTCAGCTACTATA+AGG 0.397815 tig0020515:-31903 Msa1382400:CDS
ATTCCAAGAAGAAGATTAAA+GGG 0.409460 tig0020515:-31579 Msa1382400:CDS
GGATTCAAGATGATCAAAAC+TGG 0.409796 tig0020515:-32042 Msa1382400:CDS
ATTGAATATGTTCAAAATAT+GGG 0.416959 tig0020515:-31616 Msa1382400:CDS
CCAAGAATTTGAAGTTCAAA+GGG 0.426487 tig0020515:-32095 Msa1382400:CDS
GTTTGGAGGATCAAGATTCA+TGG 0.428070 tig0020515:-32464 Msa1382400:CDS
AAGATTCAGAAGTTGAAAAT+GGG 0.428326 tig0020515:-31957 Msa1382400:CDS
TCCAAGAATTTGAAGTTCAA+AGG 0.432409 tig0020515:-32096 Msa1382400:CDS
CATAATCAAGAGGCACTTGT+AGG 0.439216 tig0020515:-31331 Msa1382400:CDS
AAACTGGAGTTTGCATCAAA+GGG 0.452059 tig0020515:-32026 Msa1382400:CDS
AGCTTCTTCTTCTGTTTCTG+AGG 0.456439 tig0020515:-32334 Msa1382400:CDS
AAAACTGGAGTTTGCATCAA+AGG 0.462834 tig0020515:-32027 Msa1382400:CDS
GGTTCTGAAGCTGCAACTAA+TGG 0.470954 tig0020515:-32663 Msa1382400:CDS
AATGGGAAAAGCAGAGTCAA+TGG 0.477352 tig0020515:-31940 Msa1382400:CDS
CTTTCTTCCTCAGTAGCAGC+AGG 0.478387 tig0020515:+31403 None:intergenic
TGGACATAAAAGATCTCATA+TGG 0.479948 tig0020515:-31503 Msa1382400:CDS
CATTCTTATCAAGCTCTTGG+AGG 0.487098 tig0020515:-31775 Msa1382400:CDS
AGATCTCATATGGTTGCTAC+TGG 0.491040 tig0020515:-31493 Msa1382400:CDS
AAGAGTTTCTAACAGTTTGG+AGG 0.513244 tig0020515:-32478 Msa1382400:CDS
AGACCTTGGTGGATAGTTGA+AGG 0.528869 tig0020515:-31358 Msa1382400:CDS
TAATCTTCCTGCTGCTACTG+AGG 0.529053 tig0020515:-31410 Msa1382400:CDS
GCTTGATTATCTGTCTACAT+TGG 0.549776 tig0020515:-31980 Msa1382400:CDS
TTAGTAGAGATGTTAGTCCT+TGG 0.555862 tig0020515:-32269 Msa1382400:CDS
GACAAATTCTGCAAAGAGTG+TGG 0.556631 tig0020515:-32561 Msa1382400:CDS
CTGATTCTAACAGACCTTGG+TGG 0.557324 tig0020515:-31369 Msa1382400:CDS
CAATCTGGTCAAGCCTTAGG+TGG 0.558498 tig0020515:-31523 Msa1382400:CDS
GCTGCAACTAATGGTAGCTA+TGG 0.563432 tig0020515:-32654 Msa1382400:CDS
GAGAGAACCCAAAGAAGACA+TGG 0.571762 tig0020515:-32626 Msa1382400:CDS
CCTTGTGGTAGATCTTTAGG+AGG 0.573424 tig0020515:-32780 Msa1382400:CDS
GTAAACAGAATTATTATCAG+AGG 0.576383 tig0020515:+32218 None:intergenic
CAAGAGGCACTTGTAGGGTA+CGG 0.590543 tig0020515:-31325 Msa1382400:CDS
ATGCTGATTCTAACAGACCT+TGG 0.596589 tig0020515:-31372 Msa1382400:CDS
TCAAGAAAGTCCCTAATCTG+TGG 0.600941 tig0020515:+31436 None:intergenic
ATAATCAAGAGGCACTTGTA+GGG 0.602596 tig0020515:-31330 Msa1382400:CDS
TGAGAGTAGAGTTGTACTTG+AGG 0.630352 tig0020515:-31467 Msa1382400:CDS
AGATAATGAAGACCACTCCA+AGG 0.644754 tig0020515:+32252 None:intergenic
TCATGATCATGATCATGATG+AGG 0.648539 tig0020515:+31865 None:intergenic
GATCTTTAGGAGGTCACATG+AGG 0.656622 tig0020515:-32770 Msa1382400:CDS
TGAAGGCAACCATAATCAAG+AGG 0.657701 tig0020515:-31341 Msa1382400:CDS
CCTCCTAAAGATCTACCACA+AGG 0.657873 tig0020515:+32780 None:intergenic
AACAAGAACAAGGTACAACA+TGG 0.663025 tig0020515:-32370 Msa1382400:CDS
AGAGATGTTAGTCCTTGGAG+TGG 0.673173 tig0020515:-32264 Msa1382400:CDS
GATCAAAGAGAACAAGAACA+AGG 0.701444 tig0020515:-32380 Msa1382400:CDS
TGTAGCAAAAGCTTTCCTTG+TGG 0.721402 tig0020515:-32795 Msa1382400:CDS
TTGCCTTCAACTATCCACCA+AGG 0.733273 tig0020515:+31355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATATGTTCAAAATAT+GGG - tig0020515:32533-32552 Msa1382400:CDS 15.0%
!! ATTGAATATGTTCAAAATAT+GGG - tig0020515:32533-32552 Msa1382400:CDS 15.0%
!!! TTTGATCTTTTCTTTCTATT+TGG + tig0020515:31756-31775 None:intergenic 20.0%
!!! ATCAAGAATTTTAATAAGAG+AGG - tig0020515:32317-32336 Msa1382400:CDS 20.0%
!! CATTGAATATGTTCAAAATA+TGG - tig0020515:32532-32551 Msa1382400:CDS 20.0%
!!! TTTGATCTTTTCTTTCTATT+TGG + tig0020515:31756-31775 None:intergenic 20.0%
!!! ATCAAGAATTTTAATAAGAG+AGG - tig0020515:32317-32336 Msa1382400:CDS 20.0%
!! CATTGAATATGTTCAAAATA+TGG - tig0020515:32532-32551 Msa1382400:CDS 20.0%
! ACAAAAAAGAATGATAGCAT+TGG - tig0020515:31465-31484 Msa1382400:CDS 25.0%
! GTAAACAGAATTATTATCAG+AGG + tig0020515:31934-31953 None:intergenic 25.0%
! AAGATTCAGAAGTTGAAAAT+GGG - tig0020515:32192-32211 Msa1382400:CDS 25.0%
! CTAGTCATAAAAAGAACAAA+GGG - tig0020515:32405-32424 Msa1382400:CDS 25.0%
! ATTCCAAGAAGAAGATTAAA+GGG - tig0020515:32570-32589 Msa1382400:CDS 25.0%
! TGAAAAACCTTAAAGCAAAT+TGG + tig0020515:32608-32627 None:intergenic 25.0%
! ACAAAAAAGAATGATAGCAT+TGG - tig0020515:31465-31484 Msa1382400:CDS 25.0%
! GTAAACAGAATTATTATCAG+AGG + tig0020515:31934-31953 None:intergenic 25.0%
! AAGATTCAGAAGTTGAAAAT+GGG - tig0020515:32192-32211 Msa1382400:CDS 25.0%
! CTAGTCATAAAAAGAACAAA+GGG - tig0020515:32405-32424 Msa1382400:CDS 25.0%
! ATTCCAAGAAGAAGATTAAA+GGG - tig0020515:32570-32589 Msa1382400:CDS 25.0%
! TGAAAAACCTTAAAGCAAAT+TGG + tig0020515:32608-32627 None:intergenic 25.0%
AGAAAGAGTTTCTAACAGTT+TGG - tig0020515:31668-31687 Msa1382400:CDS 30.0%
! TCCAAGAATTTGAAGTTCAA+AGG - tig0020515:32053-32072 Msa1382400:CDS 30.0%
! CCAAGAATTTGAAGTTCAAA+GGG - tig0020515:32054-32073 Msa1382400:CDS 30.0%
! AGGGAAAAGTTTAGAGATTT+TGG - tig0020515:32073-32092 Msa1382400:CDS 30.0%
! ATAATCAAGCTCAGATTTTG+TGG + tig0020515:32159-32178 None:intergenic 30.0%
GAAGATTCAGAAGTTGAAAA+TGG - tig0020515:32191-32210 Msa1382400:CDS 30.0%
TATCAAAGTCAGCTACTATA+AGG - tig0020515:32246-32265 Msa1382400:CDS 30.0%
TTTCATTCTTATCAAGCTCT+TGG - tig0020515:32371-32390 Msa1382400:CDS 30.0%
GCTAGTCATAAAAAGAACAA+AGG - tig0020515:32404-32423 Msa1382400:CDS 30.0%
GATTCCAAGAAGAAGATTAA+AGG - tig0020515:32569-32588 Msa1382400:CDS 30.0%
!!! TGCTTTAAGGTTTTTCAATC+TGG - tig0020515:32611-32630 Msa1382400:CDS 30.0%
TGGACATAAAAGATCTCATA+TGG - tig0020515:32646-32665 Msa1382400:CDS 30.0%
AGAAAGAGTTTCTAACAGTT+TGG - tig0020515:31668-31687 Msa1382400:CDS 30.0%
! TCCAAGAATTTGAAGTTCAA+AGG - tig0020515:32053-32072 Msa1382400:CDS 30.0%
! CCAAGAATTTGAAGTTCAAA+GGG - tig0020515:32054-32073 Msa1382400:CDS 30.0%
! AGGGAAAAGTTTAGAGATTT+TGG - tig0020515:32073-32092 Msa1382400:CDS 30.0%
! ATAATCAAGCTCAGATTTTG+TGG + tig0020515:32159-32178 None:intergenic 30.0%
GAAGATTCAGAAGTTGAAAA+TGG - tig0020515:32191-32210 Msa1382400:CDS 30.0%
TATCAAAGTCAGCTACTATA+AGG - tig0020515:32246-32265 Msa1382400:CDS 30.0%
TTTCATTCTTATCAAGCTCT+TGG - tig0020515:32371-32390 Msa1382400:CDS 30.0%
GCTAGTCATAAAAAGAACAA+AGG - tig0020515:32404-32423 Msa1382400:CDS 30.0%
GATTCCAAGAAGAAGATTAA+AGG - tig0020515:32569-32588 Msa1382400:CDS 30.0%
!!! TGCTTTAAGGTTTTTCAATC+TGG - tig0020515:32611-32630 Msa1382400:CDS 30.0%
TGGACATAAAAGATCTCATA+TGG - tig0020515:32646-32665 Msa1382400:CDS 30.0%
TTTCCTTGTGGTAGATCTTT+AGG - tig0020515:31366-31385 Msa1382400:CDS 35.0%
TCTTTCTCCATGTCTTCTTT+GGG + tig0020515:31533-31552 None:intergenic 35.0%
! GTGGAAAATGTTTTCACTCT+TGG - tig0020515:31607-31626 Msa1382400:CDS 35.0%
AAGAGTTTCTAACAGTTTGG+AGG - tig0020515:31671-31690 Msa1382400:CDS 35.0%
GATCAAAGAGAACAAGAACA+AGG - tig0020515:31769-31788 Msa1382400:CDS 35.0%
AACAAGAACAAGGTACAACA+TGG - tig0020515:31779-31798 Msa1382400:CDS 35.0%
TTAGTAGAGATGTTAGTCCT+TGG - tig0020515:31880-31899 Msa1382400:CDS 35.0%
CCCTTTGAACTTCAAATTCT+TGG + tig0020515:32057-32076 None:intergenic 35.0%
! GAGATTTTGGATGCTGAAAA+AGG - tig0020515:32086-32105 Msa1382400:CDS 35.0%
GGATTCAAGATGATCAAAAC+TGG - tig0020515:32107-32126 Msa1382400:CDS 35.0%
AAAACTGGAGTTTGCATCAA+AGG - tig0020515:32122-32141 Msa1382400:CDS 35.0%
AAACTGGAGTTTGCATCAAA+GGG - tig0020515:32123-32142 Msa1382400:CDS 35.0%
GCTTGATTATCTGTCTACAT+TGG - tig0020515:32169-32188 Msa1382400:CDS 35.0%
TCATGATCATGATCATGATG+AGG + tig0020515:32287-32306 None:intergenic 35.0%
ATGCCCTTTAATCTTCTTCT+TGG + tig0020515:32576-32595 None:intergenic 35.0%
! TGAGTGTCCAATTTGCTTTA+AGG - tig0020515:32598-32617 Msa1382400:CDS 35.0%
! AGATCTTTTATGTCCACCTA+AGG + tig0020515:32642-32661 None:intergenic 35.0%
!! ATAATCAAGAGGCACTTGTA+GGG - tig0020515:32819-32838 Msa1382400:CDS 35.0%
TTTCCTTGTGGTAGATCTTT+AGG - tig0020515:31366-31385 Msa1382400:CDS 35.0%
TCTTTCTCCATGTCTTCTTT+GGG + tig0020515:31533-31552 None:intergenic 35.0%
! GTGGAAAATGTTTTCACTCT+TGG - tig0020515:31607-31626 Msa1382400:CDS 35.0%
AAGAGTTTCTAACAGTTTGG+AGG - tig0020515:31671-31690 Msa1382400:CDS 35.0%
GATCAAAGAGAACAAGAACA+AGG - tig0020515:31769-31788 Msa1382400:CDS 35.0%
AACAAGAACAAGGTACAACA+TGG - tig0020515:31779-31798 Msa1382400:CDS 35.0%
TTAGTAGAGATGTTAGTCCT+TGG - tig0020515:31880-31899 Msa1382400:CDS 35.0%
CCCTTTGAACTTCAAATTCT+TGG + tig0020515:32057-32076 None:intergenic 35.0%
! GAGATTTTGGATGCTGAAAA+AGG - tig0020515:32086-32105 Msa1382400:CDS 35.0%
GGATTCAAGATGATCAAAAC+TGG - tig0020515:32107-32126 Msa1382400:CDS 35.0%
AAAACTGGAGTTTGCATCAA+AGG - tig0020515:32122-32141 Msa1382400:CDS 35.0%
AAACTGGAGTTTGCATCAAA+GGG - tig0020515:32123-32142 Msa1382400:CDS 35.0%
GCTTGATTATCTGTCTACAT+TGG - tig0020515:32169-32188 Msa1382400:CDS 35.0%
TCATGATCATGATCATGATG+AGG + tig0020515:32287-32306 None:intergenic 35.0%
ATGCCCTTTAATCTTCTTCT+TGG + tig0020515:32576-32595 None:intergenic 35.0%
! TGAGTGTCCAATTTGCTTTA+AGG - tig0020515:32598-32617 Msa1382400:CDS 35.0%
! AGATCTTTTATGTCCACCTA+AGG + tig0020515:32642-32661 None:intergenic 35.0%
!! ATAATCAAGAGGCACTTGTA+GGG - tig0020515:32819-32838 Msa1382400:CDS 35.0%
TGTAGCAAAAGCTTTCCTTG+TGG - tig0020515:31354-31373 Msa1382400:CDS 40.0%
CTCTTTCTCCATGTCTTCTT+TGG + tig0020515:31534-31553 None:intergenic 40.0%
GACAAATTCTGCAAAGAGTG+TGG - tig0020515:31588-31607 Msa1382400:CDS 40.0%
GTTTGGAGGATCAAGATTCA+TGG - tig0020515:31685-31704 Msa1382400:CDS 40.0%
!! AGCTTCTTCTTCTGTTTCTG+AGG - tig0020515:31815-31834 Msa1382400:CDS 40.0%
AGATAATGAAGACCACTCCA+AGG + tig0020515:31900-31919 None:intergenic 40.0%
AATGGGAAAAGCAGAGTCAA+TGG - tig0020515:32209-32228 Msa1382400:CDS 40.0%
CATTCTTATCAAGCTCTTGG+AGG - tig0020515:32374-32393 Msa1382400:CDS 40.0%
! ATGAGCTTGCTTTCAGTTGT+TGG + tig0020515:32497-32516 None:intergenic 40.0%
TTTCAATCTGGTCAAGCCTT+AGG - tig0020515:32623-32642 Msa1382400:CDS 40.0%
AGATCTCATATGGTTGCTAC+TGG - tig0020515:32656-32675 Msa1382400:CDS 40.0%
TGAGAGTAGAGTTGTACTTG+AGG - tig0020515:32682-32701 Msa1382400:CDS 40.0%
AGGAACAAGTTCCACAGATT+AGG - tig0020515:32702-32721 Msa1382400:CDS 40.0%
GGAACAAGTTCCACAGATTA+GGG - tig0020515:32703-32722 Msa1382400:CDS 40.0%
TCAAGAAAGTCCCTAATCTG+TGG + tig0020515:32716-32735 None:intergenic 40.0%
!! ATGCTGATTCTAACAGACCT+TGG - tig0020515:32777-32796 Msa1382400:CDS 40.0%
TGAAGGCAACCATAATCAAG+AGG - tig0020515:32808-32827 Msa1382400:CDS 40.0%
CTACAAGTGCCTCTTGATTA+TGG + tig0020515:32820-32839 None:intergenic 40.0%
!! CATAATCAAGAGGCACTTGT+AGG - tig0020515:32818-32837 Msa1382400:CDS 40.0%
TGTAGCAAAAGCTTTCCTTG+TGG - tig0020515:31354-31373 Msa1382400:CDS 40.0%
CTCTTTCTCCATGTCTTCTT+TGG + tig0020515:31534-31553 None:intergenic 40.0%
GACAAATTCTGCAAAGAGTG+TGG - tig0020515:31588-31607 Msa1382400:CDS 40.0%
GTTTGGAGGATCAAGATTCA+TGG - tig0020515:31685-31704 Msa1382400:CDS 40.0%
!! AGCTTCTTCTTCTGTTTCTG+AGG - tig0020515:31815-31834 Msa1382400:CDS 40.0%
AGATAATGAAGACCACTCCA+AGG + tig0020515:31900-31919 None:intergenic 40.0%
AATGGGAAAAGCAGAGTCAA+TGG - tig0020515:32209-32228 Msa1382400:CDS 40.0%
CATTCTTATCAAGCTCTTGG+AGG - tig0020515:32374-32393 Msa1382400:CDS 40.0%
! ATGAGCTTGCTTTCAGTTGT+TGG + tig0020515:32497-32516 None:intergenic 40.0%
TTTCAATCTGGTCAAGCCTT+AGG - tig0020515:32623-32642 Msa1382400:CDS 40.0%
AGATCTCATATGGTTGCTAC+TGG - tig0020515:32656-32675 Msa1382400:CDS 40.0%
TGAGAGTAGAGTTGTACTTG+AGG - tig0020515:32682-32701 Msa1382400:CDS 40.0%
AGGAACAAGTTCCACAGATT+AGG - tig0020515:32702-32721 Msa1382400:CDS 40.0%
GGAACAAGTTCCACAGATTA+GGG - tig0020515:32703-32722 Msa1382400:CDS 40.0%
TCAAGAAAGTCCCTAATCTG+TGG + tig0020515:32716-32735 None:intergenic 40.0%
!! ATGCTGATTCTAACAGACCT+TGG - tig0020515:32777-32796 Msa1382400:CDS 40.0%
TGAAGGCAACCATAATCAAG+AGG - tig0020515:32808-32827 Msa1382400:CDS 40.0%
CTACAAGTGCCTCTTGATTA+TGG + tig0020515:32820-32839 None:intergenic 40.0%
!! CATAATCAAGAGGCACTTGT+AGG - tig0020515:32818-32837 Msa1382400:CDS 40.0%
CCTCCTAAAGATCTACCACA+AGG + tig0020515:31372-31391 None:intergenic 45.0%
CCTTGTGGTAGATCTTTAGG+AGG - tig0020515:31369-31388 Msa1382400:CDS 45.0%
! GATCTTTAGGAGGTCACATG+AGG - tig0020515:31379-31398 Msa1382400:CDS 45.0%
!! GGTTCTGAAGCTGCAACTAA+TGG - tig0020515:31486-31505 Msa1382400:CDS 45.0%
GCTGCAACTAATGGTAGCTA+TGG - tig0020515:31495-31514 Msa1382400:CDS 45.0%
GAGAGAACCCAAAGAAGACA+TGG - tig0020515:31523-31542 Msa1382400:CDS 45.0%
!! CACTCTTGGCAAGCTTTGTT+TGG - tig0020515:31621-31640 Msa1382400:CDS 45.0%
AGAGATGTTAGTCCTTGGAG+TGG - tig0020515:31885-31904 Msa1382400:CDS 45.0%
! GAGAACAAGAAGTGCGAGTT+AGG - tig0020515:32020-32039 Msa1382400:CDS 45.0%
TAATCTTCCTGCTGCTACTG+AGG - tig0020515:32739-32758 Msa1382400:CDS 45.0%
CTGATTCTAACAGACCTTGG+TGG - tig0020515:32780-32799 Msa1382400:CDS 45.0%
! AGACCTTGGTGGATAGTTGA+AGG - tig0020515:32791-32810 Msa1382400:CDS 45.0%
TTGCCTTCAACTATCCACCA+AGG + tig0020515:32797-32816 None:intergenic 45.0%
CCTCCTAAAGATCTACCACA+AGG + tig0020515:31372-31391 None:intergenic 45.0%
CCTTGTGGTAGATCTTTAGG+AGG - tig0020515:31369-31388 Msa1382400:CDS 45.0%
! GATCTTTAGGAGGTCACATG+AGG - tig0020515:31379-31398 Msa1382400:CDS 45.0%
!! GGTTCTGAAGCTGCAACTAA+TGG - tig0020515:31486-31505 Msa1382400:CDS 45.0%
GCTGCAACTAATGGTAGCTA+TGG - tig0020515:31495-31514 Msa1382400:CDS 45.0%
GAGAGAACCCAAAGAAGACA+TGG - tig0020515:31523-31542 Msa1382400:CDS 45.0%
!! CACTCTTGGCAAGCTTTGTT+TGG - tig0020515:31621-31640 Msa1382400:CDS 45.0%
AGAGATGTTAGTCCTTGGAG+TGG - tig0020515:31885-31904 Msa1382400:CDS 45.0%
! GAGAACAAGAAGTGCGAGTT+AGG - tig0020515:32020-32039 Msa1382400:CDS 45.0%
TAATCTTCCTGCTGCTACTG+AGG - tig0020515:32739-32758 Msa1382400:CDS 45.0%
CTGATTCTAACAGACCTTGG+TGG - tig0020515:32780-32799 Msa1382400:CDS 45.0%
! AGACCTTGGTGGATAGTTGA+AGG - tig0020515:32791-32810 Msa1382400:CDS 45.0%
TTGCCTTCAACTATCCACCA+AGG + tig0020515:32797-32816 None:intergenic 45.0%
CAATCTGGTCAAGCCTTAGG+TGG - tig0020515:32626-32645 Msa1382400:CDS 50.0%
CTTTCTTCCTCAGTAGCAGC+AGG + tig0020515:32749-32768 None:intergenic 50.0%
!! CAAGAGGCACTTGTAGGGTA+CGG - tig0020515:32824-32843 Msa1382400:CDS 50.0%
CAATCTGGTCAAGCCTTAGG+TGG - tig0020515:32626-32645 Msa1382400:CDS 50.0%
CTTTCTTCCTCAGTAGCAGC+AGG + tig0020515:32749-32768 None:intergenic 50.0%
!! CAAGAGGCACTTGTAGGGTA+CGG - tig0020515:32824-32843 Msa1382400:CDS 50.0%
Chromosome Type Strat End Strand Name
tig0020515 gene 31309 32862 31309 ID=Msa1382400;Name=Msa1382400
tig0020515 mRNA 31309 32862 31309 ID=Msa1382400-mRNA-1;Parent=Msa1382400;Name=Msa1382400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|517
tig0020515 exon 31309 32862 31309 ID=Msa1382400-mRNA-1:exon:8123;Parent=Msa1382400-mRNA-1
tig0020515 CDS 31309 32862 31309 ID=Msa1382400-mRNA-1:cds;Parent=Msa1382400-mRNA-1
Gene Sequence

>Msa1382400

ATGGAAGAAGATCAAATTCAAGAATTCAAACATGCTTGCAAATTCTGTAGCAAAAGCTTTCCTTGTGGTAGATCTTTAGGAGGTCACATGAGGTCTCATATCAACAATTTATCAGCTGAAAAAACAGAACACAAAGAAAAGCAGCTTATATCTTCAACAAAAAAGAATGATAGCATTGGTTCTGAAGCTGCAACTAATGGTAGCTATGGTCTAAGAGAGAACCCAAAGAAGACATGGAGAAAGAGAATTGCAGATTCAAGTGAAGATAGTTATGTGTATGACAAATTCTGCAAAGAGTGTGGAAAATGTTTTCACTCTTGGCAAGCTTTGTTTGGTCACATGAAGTGTCATTCAGAGAAAGAAAGAGTTTCTAACAGTTTGGAGGATCAAGATTCATGGACTAATAATGCTAAAGATGATCAATCAGACAATGAAATCACTGCTCCAAATAGAAAGAAAAGATCAAAGAGAACAAGAACAAGGTACAACATGGTAGCAGCTGCAACAGCTTCTTCTTCTGTTTCTGAGGTTGAACATGAGCAAGAAGAAGTTGCTATGAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTCTTCATTATCTCGCTGCTGAATCCTCTGATAATAATTCTGTTTACTTTGAAGCTCGATCTTCAGTTCGAACTAATCTTGTTACTAAATTTGATGCTAATATGAAGCAAAGTGAGAACAAGAAGTGCGAGTTAGGCAATTCTGTTTCCAAGAATTTGAAGTTCAAAGGGAAAAGTTTAGAGATTTTGGATGCTGAAAAAGGATTCAAGATGATCAAAACTGGAGTTTGCATCAAAGGGTTTCTCAAATCCACAAAATCTGAGCTTGATTATCTGTCTACATTGGAAGATTCAGAAGTTGAAAATGGGAAAAGCAGAGTCAATGGAACAGAATCAGTTCTATCAAAGTCAGCTACTATAAGGAGTTCTGTGAACAAGCCTCATCATGATCATGATCATGAAGATGAATTTATCAAGAATTTTAATAAGAGAGGAAAGTTTGAGTGTACTACTTGTAACAAAATCTTTCATTCTTATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAAAAGAACAAAGGGTGTTTTGCTTCTAAGATTGAGAGCAGTGAAAACAGCATTGAATTTGAAACTGATCTCTCTCATGAACCAACAACTGAAAGCAAGCTCATGAAGATAAGTGATAACATTGAATATGTTCAAAATATGGGAGAAACAGTTAGAGATTCCAAGAAGAAGATTAAAGGGCATCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCCTTAGGTGGACATAAAAGATCTCATATGGTTGCTACTGGTTCTGAGAGTAGAGTTGTACTTGAGGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGTAATAGTCATGCTGATTCTAACAGACCTTGGTGGATAGTTGAAGGCAACCATAATCAAGAGGCACTTGTAGGGTACGGACTCATATCTAGCTAA

Protein sequence

>Msa1382400

MEEDQIQEFKHACKFCSKSFPCGRSLGGHMRSHINNLSAEKTEHKEKQLISSTKKNDSIGSEAATNGSYGLRENPKKTWRKRIADSSEDSYVYDKFCKECGKCFHSWQALFGHMKCHSEKERVSNSLEDQDSWTNNAKDDQSDNEITAPNRKKRSKRTRTRYNMVAAATASSSVSEVEHEQEEVAMSLIMLSRDVSPWSGLHYLAAESSDNNSVYFEARSSVRTNLVTKFDANMKQSENKKCELGNSVSKNLKFKGKSLEILDAEKGFKMIKTGVCIKGFLKSTKSELDYLSTLEDSEVENGKSRVNGTESVLSKSATIRSSVNKPHHDHDHEDEFIKNFNKRGKFECTTCNKIFHSYQALGGHRASHKKNKGCFASKIESSENSIEFETDLSHEPTTESKLMKISDNIEYVQNMGETVRDSKKKIKGHHECPICFKVFQSGQALGGHKRSHMVATGSESRVVLEEQVPQIRDFLDLNLPAATEEESNSHADSNRPWWIVEGNHNQEALVGYGLISS*