Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084400 | XP_013469426.1 | 100.000 | 230 | 0 | 0 | 1 | 230 | 1 | 230 | 3.53e-169 | 475 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084400 | sp|Q9C835|CP21D_ARATH | 59.657 | 233 | 88 | 3 | 1 | 227 | 1 | 233 | 1.62e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084400 | B7FHA8 | 100.000 | 230 | 0 | 0 | 1 | 230 | 1 | 230 | 1.69e-169 | 475 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0084400 | 0.821210 | 4.556746e-53 | -8.615850e-47 |
| Msa0010500 | Msa0084400 | 0.801582 | 8.411360e-49 | -8.615850e-47 |
| Msa0036540 | Msa0084400 | 0.850110 | 2.099254e-60 | -8.615850e-47 |
| Msa0080730 | Msa0084400 | 0.826116 | 3.237120e-54 | -8.615850e-47 |
| Msa0084400 | Msa0119440 | 0.812317 | 4.505542e-51 | -8.615850e-47 |
| Msa0084400 | Msa0119900 | 0.800589 | 1.342667e-48 | -8.615850e-47 |
| Msa0084400 | Msa0126840 | 0.814918 | 1.206276e-51 | -8.615850e-47 |
| Msa0084400 | Msa0126880 | 0.821521 | 3.863032e-53 | -8.615850e-47 |
| Msa0084400 | Msa0174000 | 0.809831 | 1.557948e-50 | -8.615850e-47 |
| Msa0084400 | Msa0192640 | 0.807700 | 4.447455e-50 | -8.615850e-47 |
| Msa0084400 | Msa0229360 | 0.818566 | 1.833059e-52 | -8.615850e-47 |
| Msa0084400 | Msa0244980 | 0.802215 | 6.236122e-49 | -8.615850e-47 |
| Msa0084400 | Msa0245580 | 0.847933 | 8.449566e-60 | -8.615850e-47 |
| Msa0084400 | Msa0296790 | 0.814694 | 1.352486e-51 | -8.615850e-47 |
| Msa0084400 | Msa0296920 | 0.801051 | 1.080447e-48 | -8.615850e-47 |
| Msa0084400 | Msa0300350 | 0.804304 | 2.303243e-49 | -8.615850e-47 |
| Msa0084400 | Msa0320590 | 0.803542 | 3.316601e-49 | -8.615850e-47 |
| Msa0084400 | Msa0321690 | 0.806002 | 1.016226e-49 | -8.615850e-47 |
| Msa0084400 | Msa0382370 | 0.806535 | 7.847971e-50 | -8.615850e-47 |
| Msa0084400 | Msa0384670 | 0.805103 | 1.569082e-49 | -8.615850e-47 |
| Msa0084400 | Msa0385500 | 0.817842 | 2.673286e-52 | -8.615850e-47 |
| Msa0084400 | Msa0434570 | 0.803235 | 3.840268e-49 | -8.615850e-47 |
| Msa0084400 | Msa0434770 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
| Msa0084400 | Msa0443390 | 0.800123 | 1.670528e-48 | -8.615850e-47 |
| Msa0084400 | Msa0478580 | 0.818288 | 2.119275e-52 | -8.615850e-47 |
| Msa0084400 | Msa0482940 | 0.814866 | 1.238504e-51 | -8.615850e-47 |
| Msa0084400 | Msa0511770 | 0.829389 | 5.291463e-55 | -8.615850e-47 |
| Msa0084400 | Msa0547160 | 0.800323 | 1.520931e-48 | -8.615850e-47 |
| Msa0084400 | Msa0603570 | 0.808201 | 3.479089e-50 | -8.615850e-47 |
| Msa0084400 | Msa0615580 | 0.806643 | 7.445547e-50 | -8.615850e-47 |
| Msa0084400 | Msa0615680 | 0.800570 | 1.354898e-48 | -8.615850e-47 |
| Msa0084400 | Msa0619860 | 0.802658 | 5.053200e-49 | -8.615850e-47 |
| Msa0084400 | Msa0640940 | 0.800104 | 1.685370e-48 | -8.615850e-47 |
| Msa0084400 | Msa0659790 | 0.839201 | 1.825440e-57 | -8.615850e-47 |
| Msa0084400 | Msa0669720 | 0.818204 | 2.214779e-52 | -8.615850e-47 |
| Msa0084400 | Msa0679360 | 0.800489 | 1.406853e-48 | -8.615850e-47 |
| Msa0084400 | Msa0743530 | 0.801702 | 7.947802e-49 | -8.615850e-47 |
| Msa0084400 | Msa0746170 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa0084400 | Msa0746210 | 0.811385 | 7.188975e-51 | -8.615850e-47 |
| Msa0084400 | Msa0818770 | 0.818177 | 2.245583e-52 | -8.615850e-47 |
| Msa0084400 | Msa0822170 | 0.804845 | 1.776763e-49 | -8.615850e-47 |
| Msa0084400 | Msa0826150 | 0.800007 | 1.763632e-48 | -8.615850e-47 |
| Msa0084400 | Msa0833190 | -0.823287 | 1.502445e-53 | -8.615850e-47 |
| Msa0084400 | Msa0855110 | 0.806283 | 8.868825e-50 | -8.615850e-47 |
| Msa0084400 | Msa0903780 | 0.801247 | 9.854231e-49 | -8.615850e-47 |
| Msa0084400 | Msa0913240 | 0.811587 | 6.499622e-51 | -8.615850e-47 |
| Msa0084400 | Msa0944200 | 0.830929 | 2.226089e-55 | -8.615850e-47 |
| Msa0084400 | Msa0944610 | 0.824792 | 6.662199e-54 | -8.615850e-47 |
| Msa0084400 | Msa0974950 | 0.804507 | 2.089690e-49 | -8.615850e-47 |
| Msa0084400 | Msa1039810 | 0.811048 | 8.505249e-51 | -8.615850e-47 |
| Msa0084400 | Msa1070390 | 0.808382 | 3.182755e-50 | -8.615850e-47 |
| Msa0084400 | Msa1096070 | 0.824491 | 7.843493e-54 | -8.615850e-47 |
| Msa0084400 | Msa1125790 | -0.812833 | 3.474002e-51 | -8.615850e-47 |
| Msa0084400 | Msa1165780 | 0.844609 | 6.798038e-59 | -8.615850e-47 |
| Msa0084400 | Msa1206650 | 0.837133 | 6.220188e-57 | -8.615850e-47 |
| Msa0084400 | Msa1226610 | 0.801956 | 7.050064e-49 | -8.615850e-47 |
| Msa0084400 | Msa1234620 | 0.806450 | 8.176313e-50 | -8.615850e-47 |
| Msa0084400 | Msa1276970 | 0.886146 | 4.406515e-72 | -8.615850e-47 |
| Msa0084400 | Msa1303580 | 0.812032 | 5.198043e-51 | -8.615850e-47 |
| Msa0084400 | Msa1307180 | 0.825379 | 4.841173e-54 | -8.615850e-47 |
| Msa0084400 | Msa1316360 | 0.818107 | 2.329605e-52 | -8.615850e-47 |
| Msa0084400 | Msa1351540 | 0.816365 | 5.743429e-52 | -8.615850e-47 |
| Msa0084400 | Msa1352890 | 0.821550 | 3.803966e-53 | -8.615850e-47 |
| Msa0084400 | Msa1370590 | 0.814565 | 1.444023e-51 | -8.615850e-47 |
| Msa0084400 | Msa1384100 | 0.814898 | 1.218753e-51 | -8.615850e-47 |
| Msa0084400 | Msa1395730 | 0.840994 | 6.218850e-58 | -8.615850e-47 |
| Msa0084400 | Msa1421900 | 0.805887 | 1.074440e-49 | -8.615850e-47 |
| Msa0084400 | Msa1422810 | 0.803044 | 4.206028e-49 | -8.615850e-47 |
| Msa0084400 | Msa1444120 | 0.818325 | 2.079581e-52 | -8.615850e-47 |
| Msa0084400 | Msa1447180 | 0.803644 | 3.158876e-49 | -8.615850e-47 |
| Msa0084400 | Msa1454450 | 0.813638 | 2.313169e-51 | -8.615850e-47 |
| Msa0084400 | Msa1458090 | 0.815755 | 7.856390e-52 | -8.615850e-47 |
| Msa0084400 | Msa1459960 | 0.816990 | 4.157682e-52 | -8.615850e-47 |
| Msa0084400 | Msa1462470 | 0.831602 | 1.521234e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084400 | MtrunA17_Chr1g0199071 | 100.000 | 230 | 0 | 0 | 1 | 230 | 1 | 230 | 3.25e-173 | 475 |
| Msa0084400 | MtrunA17_Chr1g0163031 | 72.926 | 229 | 60 | 2 | 1 | 228 | 1 | 228 | 7.14e-121 | 343 |
| Msa0084400 | MtrunA17_Chr2g0321111 | 35.976 | 164 | 99 | 2 | 71 | 228 | 453 | 616 | 4.15e-27 | 108 |
| Msa0084400 | MtrunA17_Chr7g0266721 | 33.113 | 151 | 95 | 2 | 83 | 227 | 13 | 163 | 7.81e-23 | 90.9 |
| Msa0084400 | MtrunA17_Chr8g0351571 | 33.775 | 151 | 92 | 3 | 83 | 226 | 4 | 153 | 9.41e-19 | 80.1 |
| Msa0084400 | MtrunA17_Chr5g0401141 | 34.641 | 153 | 92 | 3 | 80 | 225 | 345 | 496 | 4.23e-18 | 82.8 |
| Msa0084400 | MtrunA17_Chr4g0045321 | 36.129 | 155 | 80 | 7 | 88 | 224 | 17 | 170 | 6.90e-17 | 78.6 |
| Msa0084400 | MtrunA17_Chr7g0270991 | 34.437 | 151 | 82 | 6 | 87 | 224 | 108 | 254 | 3.01e-16 | 75.5 |
| Msa0084400 | MtrunA17_Chr4g0038431 | 35.220 | 159 | 77 | 6 | 82 | 219 | 11 | 164 | 4.11e-15 | 70.9 |
| Msa0084400 | MtrunA17_Chr1g0213971 | 35.811 | 148 | 72 | 7 | 89 | 219 | 94 | 235 | 2.10e-14 | 70.1 |
| Msa0084400 | MtrunA17_Chr8g0374621 | 33.758 | 157 | 81 | 7 | 88 | 224 | 17 | 170 | 3.39e-14 | 70.9 |
| Msa0084400 | MtrunA17_Chr3g0145501 | 35.897 | 156 | 66 | 7 | 89 | 219 | 26 | 172 | 5.54e-14 | 68.2 |
| Msa0084400 | MtrunA17_Chr3g0104751 | 32.237 | 152 | 84 | 7 | 89 | 223 | 48 | 197 | 4.24e-13 | 65.9 |
| Msa0084400 | MtrunA17_Chr8g0353571 | 33.333 | 156 | 87 | 7 | 85 | 224 | 28 | 182 | 7.84e-13 | 64.7 |
| Msa0084400 | MtrunA17_Chr2g0288371 | 27.922 | 154 | 101 | 3 | 80 | 224 | 13 | 165 | 6.53e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084400 | AT3G66654.4 | 59.657 | 233 | 88 | 3 | 1 | 227 | 1 | 233 | 1.64e-90 | 266 |
| Msa0084400 | AT3G66654.2 | 59.657 | 233 | 88 | 3 | 1 | 227 | 1 | 233 | 1.64e-90 | 266 |
| Msa0084400 | AT3G66654.3 | 59.657 | 233 | 88 | 3 | 1 | 227 | 1 | 233 | 1.64e-90 | 266 |
| Msa0084400 | AT3G66654.1 | 59.657 | 233 | 88 | 3 | 1 | 227 | 1 | 233 | 1.64e-90 | 266 |
| Msa0084400 | AT3G66654.5 | 59.657 | 233 | 88 | 3 | 1 | 227 | 1 | 233 | 1.64e-90 | 266 |
| Msa0084400 | AT2G47320.1 | 54.348 | 230 | 101 | 3 | 1 | 228 | 1 | 228 | 2.89e-79 | 238 |
| Msa0084400 | AT3G44600.1 | 36.000 | 175 | 101 | 3 | 60 | 228 | 461 | 630 | 3.69e-27 | 109 |
| Msa0084400 | AT2G36130.1 | 31.333 | 150 | 97 | 2 | 79 | 222 | 9 | 158 | 2.57e-21 | 87.4 |
| Msa0084400 | AT1G01940.1 | 32.667 | 150 | 95 | 2 | 83 | 226 | 4 | 153 | 3.97e-19 | 81.3 |
| Msa0084400 | AT5G67530.1 | 33.766 | 154 | 94 | 4 | 80 | 226 | 344 | 496 | 1.96e-18 | 84.0 |
| Msa0084400 | AT5G13120.1 | 35.762 | 151 | 76 | 6 | 89 | 224 | 107 | 251 | 5.21e-16 | 75.1 |
| Msa0084400 | AT5G13120.2 | 35.762 | 151 | 76 | 6 | 89 | 224 | 103 | 247 | 5.30e-16 | 75.1 |
| Msa0084400 | AT2G16600.1 | 35.374 | 147 | 77 | 6 | 87 | 216 | 17 | 162 | 1.58e-15 | 72.0 |
| Msa0084400 | AT2G15790.1 | 35.484 | 155 | 81 | 7 | 88 | 224 | 17 | 170 | 2.91e-15 | 74.3 |
| Msa0084400 | AT4G34870.1 | 35.135 | 148 | 80 | 5 | 86 | 217 | 15 | 162 | 1.79e-14 | 69.3 |
| Msa0084400 | AT2G29960.2 | 33.775 | 151 | 77 | 7 | 87 | 223 | 44 | 185 | 4.62e-13 | 65.9 |
| Msa0084400 | AT4G33060.1 | 28.966 | 145 | 93 | 3 | 80 | 215 | 13 | 156 | 1.06e-12 | 67.0 |
| Msa0084400 | AT3G56070.1 | 31.034 | 145 | 70 | 7 | 89 | 210 | 18 | 155 | 3.78e-11 | 60.5 |
| Msa0084400 | AT3G56070.2 | 31.034 | 145 | 70 | 7 | 89 | 210 | 18 | 155 | 3.78e-11 | 60.5 |
Find 80 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTACAAAACTGGCCATTT+TGG | 0.166485 | 1_2:+63796387 | None:intergenic |
| TATGATAGGATTAGGTTAAA+TGG | 0.203431 | 1_2:-63800761 | Msa0084400:intron |
| TTGTAGGTTGAAAATAGTTT+TGG | 0.284508 | 1_2:-63799327 | Msa0084400:intron |
| TGATTTGTCTGCAGTCAAAA+AGG | 0.285296 | 1_2:-63797792 | Msa0084400:intron |
| TACACTCCTAAAATAACTAT+TGG | 0.286009 | 1_2:-63796867 | Msa0084400:CDS |
| AATGAGAAGCTTATTGTGTT+TGG | 0.290264 | 1_2:-63797463 | Msa0084400:CDS |
| AGTTTGCTTATAACCTGTTT+TGG | 0.308387 | 1_2:-63796772 | Msa0084400:three_prime_UTR |
| CTACGCTTTGATTCTTGTCT+TGG | 0.316133 | 1_2:-63800656 | Msa0084400:CDS |
| TATTAAGCACTATGTGATTC+AGG | 0.332742 | 1_2:-63797739 | Msa0084400:CDS |
| TTGACGAATTTATTGACTTA+TGG | 0.343573 | 1_2:-63799059 | Msa0084400:intron |
| ATAAATTCGTCAACAGCTTC+AGG | 0.351785 | 1_2:+63799069 | None:intergenic |
| CATACAGACATTGGTCTAAC+AGG | 0.351889 | 1_2:-63800612 | Msa0084400:intron |
| TTTCGTGTAGTTGGAGGCTT+TGG | 0.353668 | 1_2:+63801310 | None:intergenic |
| AATTTAGCAGTGAGCCAAAA+TGG | 0.353974 | 1_2:-63796401 | Msa0084400:three_prime_UTR |
| TCATCCCTGTACAAAAGATT+TGG | 0.360099 | 1_2:+63796741 | None:intergenic |
| TTTGTGTATGCTTGTAAGAT+TGG | 0.373698 | 1_2:-63796538 | Msa0084400:three_prime_UTR |
| TAAAGAGAATATTACAAAAC+TGG | 0.381114 | 1_2:+63796378 | None:intergenic |
| AATGAGAAATTTCGTGTAGT+TGG | 0.381441 | 1_2:+63801301 | None:intergenic |
| CAAGGGAGAGGATGTTGTTC+AGG | 0.390816 | 1_2:-63797431 | Msa0084400:intron |
| AAAGAATAAGAAAACCTTGC+AGG | 0.393868 | 1_2:+63797663 | None:intergenic |
| TAGGTCTTAAATACATCTAA+AGG | 0.399050 | 1_2:-63799126 | Msa0084400:CDS |
| TTTGTTGGTGTGTTTGCCCT+TGG | 0.409985 | 1_2:+63797528 | None:intergenic |
| GCTTTGATTCTTGTCTTGGT+TGG | 0.410038 | 1_2:-63800652 | Msa0084400:CDS |
| ACACTCCTAAAATAACTATT+GGG | 0.416681 | 1_2:-63796866 | Msa0084400:CDS |
| ATAAGCTTCTCATTTAGATC+TGG | 0.424089 | 1_2:+63797472 | None:intergenic |
| TTTGGCCGGAGCACCAAAAC+AGG | 0.432282 | 1_2:+63796759 | None:intergenic |
| AAAGAGAGGAGTGAAGTAGA+AGG | 0.455307 | 1_2:+63801171 | None:intergenic |
| CAACATCAAGGCTCAAAAGC+TGG | 0.462158 | 1_2:+63796684 | None:intergenic |
| TGACGACAATGTTGGAAAAC+TGG | 0.466885 | 1_2:-63801334 | None:intergenic |
| AAGGCACAGGAGCAGCTGAT+TGG | 0.470138 | 1_2:-63797704 | Msa0084400:CDS |
| GCAGGGGATGGTCAAGGCAC+AGG | 0.470569 | 1_2:-63797717 | Msa0084400:CDS |
| GAAAAGATCAAATCCTTTGT+TGG | 0.478754 | 1_2:+63797513 | None:intergenic |
| TTCTCATTTAGATCTGGAAT+CGG | 0.478846 | 1_2:+63797478 | None:intergenic |
| GAGAAATTTCGTGTAGTTGG+AGG | 0.480954 | 1_2:+63801304 | None:intergenic |
| AGGTCTTAAATACATCTAAA+GGG | 0.486599 | 1_2:-63799125 | Msa0084400:CDS |
| CTCTGTTACAACAAAGCAAA+AGG | 0.489993 | 1_2:-63800720 | Msa0084400:CDS |
| GCAGCTGATTGGAACTTAAG+AGG | 0.490971 | 1_2:-63797693 | Msa0084400:CDS |
| AAAGGAAGAAGGGACCTTCT+CGG | 0.493022 | 1_2:-63800702 | Msa0084400:CDS |
| TTAGTTATGAACAGTGATGC+AGG | 0.496818 | 1_2:-63796650 | Msa0084400:three_prime_UTR |
| AATTATAAAGTAACAGAAAG+AGG | 0.499364 | 1_2:+63796604 | None:intergenic |
| GTAGAAGGTGGTGCAGTGAA+TGG | 0.511310 | 1_2:+63801186 | None:intergenic |
| CAACCCAGGTGAACTTCTAA+AGG | 0.512996 | 1_2:+63796714 | None:intergenic |
| ACAACAAAGCAAAAGGAAGA+AGG | 0.520495 | 1_2:-63800713 | Msa0084400:CDS |
| AATGTCTGTATGTAGCCAAA+AGG | 0.524194 | 1_2:+63800623 | None:intergenic |
| AAGCACTATGTGATTCAGGC+AGG | 0.525167 | 1_2:-63797735 | Msa0084400:CDS |
| TCGAAGAAATCTGAGCTACC+TGG | 0.535071 | 1_2:-63799300 | Msa0084400:CDS |
| CTTTGTTGTAACAGAGCCTG+AGG | 0.536853 | 1_2:+63800727 | None:intergenic |
| AATGGCTAGGATCAAACCTC+AGG | 0.537124 | 1_2:-63800743 | Msa0084400:CDS |
| AAACATGAAGCATTCATGCT+TGG | 0.537837 | 1_2:-63797556 | Msa0084400:CDS |
| ATGAAACTTACAGCATATCC+AGG | 0.544358 | 1_2:+63799282 | None:intergenic |
| GAGAGGAGTGAAGTAGAAGG+TGG | 0.549838 | 1_2:+63801174 | None:intergenic |
| ATTCCAGGAAATCGAAGAAG+TGG | 0.550139 | 1_2:-63796904 | Msa0084400:intron |
| GCACTATGTGATTCAGGCAG+GGG | 0.552477 | 1_2:-63797733 | Msa0084400:CDS |
| CCTCTCTTTCAACATCTCGC+AGG | 0.553170 | 1_2:-63801157 | Msa0084400:intron |
| CCCTGTACAAAAGATTTGGC+CGG | 0.555331 | 1_2:+63796745 | None:intergenic |
| GTGTTTGGACAAGTCGTCAA+GGG | 0.558972 | 1_2:-63797448 | Msa0084400:CDS |
| TGGACAAGTCGTCAAGGGAG+AGG | 0.559232 | 1_2:-63797443 | Msa0084400:CDS |
| CTCTCAAACAGAAGGTCTGA+AGG | 0.559435 | 1_2:-63796830 | Msa0084400:exon |
| TAGGATTAGGTTAAATGGCT+AGG | 0.565103 | 1_2:-63800756 | Msa0084400:exon |
| CCTGCGAGATGTTGAAAGAG+AGG | 0.567408 | 1_2:+63801157 | None:intergenic |
| ATTCATGCTTGGAACATCCA+AGG | 0.573047 | 1_2:-63797545 | Msa0084400:CDS |
| ATTCAGGCAGGGGATGGTCA+AGG | 0.591509 | 1_2:-63797723 | Msa0084400:CDS |
| TGAACCTTTAGAAGTTCACC+TGG | 0.596242 | 1_2:-63796718 | Msa0084400:three_prime_UTR |
| TATGTGATTCAGGCAGGGGA+TGG | 0.596403 | 1_2:-63797729 | Msa0084400:CDS |
| CAACAAAGCAAAAGGAAGAA+GGG | 0.596730 | 1_2:-63800712 | Msa0084400:CDS |
| TTCATGCTTGGAACATCCAA+GGG | 0.601739 | 1_2:-63797544 | Msa0084400:CDS |
| GGTGCAGTGAATGGATCGTA+CGG | 0.601780 | 1_2:+63801195 | None:intergenic |
| TATAATAGTAGAACTGTACA+AGG | 0.602132 | 1_2:-63799100 | Msa0084400:CDS |
| AGCACTATGTGATTCAGGCA+GGG | 0.602224 | 1_2:-63797734 | Msa0084400:CDS |
| AAATAACTTGTCAGTCTCTG+AGG | 0.605740 | 1_2:-63799567 | Msa0084400:CDS |
| AAGGGCAAACACACCAACAA+AGG | 0.607399 | 1_2:-63797526 | Msa0084400:CDS |
| TGTGTTTGGACAAGTCGTCA+AGG | 0.618995 | 1_2:-63797449 | Msa0084400:CDS |
| AAGCTGGATCGAAGCAACCC+AGG | 0.622309 | 1_2:+63796700 | None:intergenic |
| TGATGTGACTCTCAAACAGA+AGG | 0.625289 | 1_2:-63796838 | Msa0084400:CDS |
| TAAGAGGAAAGCAACCTGCA+AGG | 0.628079 | 1_2:-63797677 | Msa0084400:intron |
| CTAGCCGCGCTAATCCGAGA+AGG | 0.659399 | 1_2:+63800688 | None:intergenic |
| TAACTTGTCAGTCTCTGAGG+AGG | 0.678198 | 1_2:-63799564 | Msa0084400:intron |
| GAACCTTTAGAAGTTCACCT+GGG | 0.688093 | 1_2:-63796717 | Msa0084400:three_prime_UTR |
| GGGACCTTCTCGGATTAGCG+CGG | 0.730312 | 1_2:-63800692 | Msa0084400:CDS |
| GCAGTGAATGGATCGTACGG+CGG | 0.736862 | 1_2:+63801198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTAATTGAAATTATTATA+TGG | - | chr1_2:63798505-63798524 | Msa0084400:intron | 10.0% |
| !!! | TTATATTGATTGAAAATAAA+TGG | + | chr1_2:63800444-63800463 | None:intergenic | 10.0% |
| !! | TAATTAATAGAATCCAAAAA+TGG | + | chr1_2:63796603-63796622 | None:intergenic | 15.0% |
| !! | AATTTCAAACTTTATGTTAA+TGG | - | chr1_2:63796762-63796781 | Msa0084400:three_prime_UTR | 15.0% |
| !! | ATTTCAAACTTTATGTTAAT+GGG | - | chr1_2:63796763-63796782 | Msa0084400:three_prime_UTR | 15.0% |
| !! | TGATCAAAAAAATAAAGATT+TGG | - | chr1_2:63796794-63796813 | Msa0084400:three_prime_UTR | 15.0% |
| !!! | AGAGAAAATATTTTTTATGT+TGG | - | chr1_2:63797580-63797599 | Msa0084400:intron | 15.0% |
| !!! | TTTTATGTTGGAAAATAAAA+AGG | - | chr1_2:63797592-63797611 | Msa0084400:intron | 15.0% |
| !! | TTTATGTTGGAAAATAAAAA+GGG | - | chr1_2:63797593-63797612 | Msa0084400:intron | 15.0% |
| !! | AAAAATGCTAAAAAATTCAA+TGG | + | chr1_2:63797919-63797938 | None:intergenic | 15.0% |
| !! | ATTGAAAATAAATGGAAAAA+TGG | + | chr1_2:63800436-63800455 | None:intergenic | 15.0% |
| !!! | TTTTCAATCAATATAAATCA+AGG | - | chr1_2:63800448-63800467 | Msa0084400:intron | 15.0% |
| !! | TATCACTTTATATGTAATTA+TGG | - | chr1_2:63800506-63800525 | Msa0084400:intron | 15.0% |
| !! | TTTAGTAATGAATACAATAA+CGG | - | chr1_2:63800543-63800562 | Msa0084400:intron | 15.0% |
| !! | AAGTTAATTAAGAACGAAAA+AGG | + | chr1_2:63796649-63796668 | None:intergenic | 20.0% |
| !! | AATAAAGATTTGGATGATAT+TGG | - | chr1_2:63796804-63796823 | Msa0084400:three_prime_UTR | 20.0% |
| !!! | TTTTGATTCAGTAGAATTTT+TGG | - | chr1_2:63796867-63796886 | Msa0084400:CDS | 20.0% |
| !!! | ATTTTGGTTTATTAACTAAC+TGG | - | chr1_2:63796903-63796922 | Msa0084400:intron | 20.0% |
| !!! | TTTTGGTTTATTAACTAACT+GGG | - | chr1_2:63796904-63796923 | Msa0084400:intron | 20.0% |
| !!! | TGAAATGCTTGATAATTTTT+GGG | - | chr1_2:63797262-63797281 | Msa0084400:intron | 20.0% |
| !!! | TTTTATTTATAAATTGGCCA+TGG | + | chr1_2:63797734-63797753 | None:intergenic | 20.0% |
| !! | GCCAATTTATAAATAAAACA+CGG | - | chr1_2:63797736-63797755 | Msa0084400:CDS | 20.0% |
| !!! | ACCGTGTTTTATTTATAAAT+TGG | + | chr1_2:63797740-63797759 | None:intergenic | 20.0% |
| !!! | CTTTAAAATCATATAACTGA+TGG | + | chr1_2:63797968-63797987 | None:intergenic | 20.0% |
| !!! | CAGTTATATGATTTTAAAGA+AGG | - | chr1_2:63797969-63797988 | Msa0084400:intron | 20.0% |
| !!! | TCTATTTTTCTCATACAAAT+AGG | - | chr1_2:63798019-63798038 | Msa0084400:intron | 20.0% |
| !! | ACCTATAATAATGAAGAAAT+AGG | + | chr1_2:63798551-63798570 | None:intergenic | 20.0% |
| !!! | TTCCAACAAAGTTTTTAATA+TGG | - | chr1_2:63798669-63798688 | Msa0084400:intron | 20.0% |
| !! | TTCCATATTAAAAACTTTGT+TGG | + | chr1_2:63798674-63798693 | None:intergenic | 20.0% |
| !! | ATATATTTCAGCTAAGATTA+TGG | + | chr1_2:63798856-63798875 | None:intergenic | 20.0% |
| !!! | ATCTTAGCTGAAATATATTT+TGG | - | chr1_2:63798858-63798877 | Msa0084400:intron | 20.0% |
| !!! | AGTCCTCTTTTTTTTTTTTT+TGG | - | chr1_2:63798902-63798921 | Msa0084400:intron | 20.0% |
| !! | TCACCAAAAAAAAAAAAAAG+AGG | + | chr1_2:63798908-63798927 | None:intergenic | 20.0% |
| !! | TTAGTATAAGTAAGAATACT+AGG | - | chr1_2:63799350-63799369 | Msa0084400:intron | 20.0% |
| !! | ATTTGTGCTATATATAAGAT+TGG | + | chr1_2:63799376-63799395 | None:intergenic | 20.0% |
| !! | AGTGATAAATCAACAAAAAT+TGG | + | chr1_2:63800493-63800512 | None:intergenic | 20.0% |
| !!! | AATTTTGACATCTGTATAAA+TGG | - | chr1_2:63800595-63800614 | Msa0084400:intron | 20.0% |
| !! | AATCAAGAGTTTCAATATTA+AGG | - | chr1_2:63800740-63800759 | Msa0084400:CDS | 20.0% |
| !! | AATTATAAAGTAACAGAAAG+AGG | + | chr1_2:63801091-63801110 | None:intergenic | 20.0% |
| !!! | CACATCTTCTTTTTTTATTT+TGG | - | chr1_2:63801183-63801202 | Msa0084400:five_prime_UTR | 20.0% |
| !! | TAAAGAGAATATTACAAAAC+TGG | + | chr1_2:63801317-63801336 | None:intergenic | 20.0% |
| !! | AAGTTGAGATTTTTACAAAG+AGG | + | chr1_2:63796457-63796476 | None:intergenic | 25.0% |
| !! | CAAAACCTTTATTCCATTTT+TGG | - | chr1_2:63796587-63796606 | Msa0084400:three_prime_UTR | 25.0% |
| ! | AGAATCCAAAAATGGAATAA+AGG | + | chr1_2:63796595-63796614 | None:intergenic | 25.0% |
| ! | TATGATAGGATTAGGTTAAA+TGG | - | chr1_2:63796931-63796950 | Msa0084400:intron | 25.0% |
| !!! | TAAATTGAGCTTTATTGCTT+TGG | - | chr1_2:63797218-63797237 | Msa0084400:intron | 25.0% |
| !!! | CTGAAATGCTTGATAATTTT+TGG | - | chr1_2:63797261-63797280 | Msa0084400:intron | 25.0% |
| ! | AGTGATAGAGAGATAATATA+GGG | - | chr1_2:63797531-63797550 | Msa0084400:CDS | 25.0% |
| !! | ATATTCGATTTTCTGTATTC+TGG | - | chr1_2:63797625-63797644 | Msa0084400:intron | 25.0% |
| !!! | TTTGTTTTGCTAAAAAACAG+AGG | + | chr1_2:63797787-63797806 | None:intergenic | 25.0% |
| !!! | ATTTTAAAGAAGGCTGTTAT+TGG | - | chr1_2:63797979-63797998 | Msa0084400:intron | 25.0% |
| ! | AAAGTAAGAAATGAATGGTT+AGG | + | chr1_2:63798075-63798094 | None:intergenic | 25.0% |
| ! | CAGTTAAAGTAAGAAATGAA+TGG | + | chr1_2:63798080-63798099 | None:intergenic | 25.0% |
| !! | TTCTTACTTTAACTGTTTTC+AGG | - | chr1_2:63798085-63798104 | Msa0084400:intron | 25.0% |
| !!! | TTGTAGGTTGAAAATAGTTT+TGG | - | chr1_2:63798365-63798384 | Msa0084400:intron | 25.0% |
| !!! | TGTAGGTTGAAAATAGTTTT+GGG | - | chr1_2:63798366-63798385 | Msa0084400:intron | 25.0% |
| ! | TTCTTCAATGAAGTTTAGAA+TGG | - | chr1_2:63798481-63798500 | Msa0084400:intron | 25.0% |
| !! | TGGAATTTTATCTTATTACC+TGG | - | chr1_2:63798525-63798544 | Msa0084400:intron | 25.0% |
| !! | GCCTATTTCTTCATTATTAT+AGG | - | chr1_2:63798547-63798566 | Msa0084400:intron | 25.0% |
| ! | TAGGTCTTAAATACATCTAA+AGG | - | chr1_2:63798566-63798585 | Msa0084400:intron | 25.0% |
| ! | AGGTCTTAAATACATCTAAA+GGG | - | chr1_2:63798567-63798586 | Msa0084400:intron | 25.0% |
| ! | TATAATAGTAGAACTGTACA+AGG | - | chr1_2:63798592-63798611 | Msa0084400:intron | 25.0% |
| !!! | TTGACGAATTTATTGACTTA+TGG | - | chr1_2:63798633-63798652 | Msa0084400:intron | 25.0% |
| !!! | GTTATTTTGTGATAGACAAT+AGG | - | chr1_2:63798762-63798781 | Msa0084400:intron | 25.0% |
| !! | AAGTGCTGTAAATATTACTT+GGG | + | chr1_2:63798821-63798840 | None:intergenic | 25.0% |
| !!! | AAAGTGCTGTAAATATTACT+TGG | + | chr1_2:63798822-63798841 | None:intergenic | 25.0% |
| !! | GTTGTTATTGATATGGAATA+TGG | + | chr1_2:63798949-63798968 | None:intergenic | 25.0% |
| !! | GTGAAATGTTGTTATTGATA+TGG | + | chr1_2:63798956-63798975 | None:intergenic | 25.0% |
| !! | TCATATCTTGTTTCTTTGTT+AGG | - | chr1_2:63798977-63798996 | Msa0084400:intron | 25.0% |
| ! | CAAATTTCCTTTGTCATATA+AGG | - | chr1_2:63799249-63799268 | Msa0084400:intron | 25.0% |
| ! | GATGTATAAAACATGTTACA+CGG | + | chr1_2:63799492-63799511 | None:intergenic | 25.0% |
| !!! | CAAATTTGTACTTTTTGATC+TGG | - | chr1_2:63799529-63799548 | Msa0084400:intron | 25.0% |
| ! | AGTAGTCTGTTCATTATAAA+TGG | - | chr1_2:63799828-63799847 | Msa0084400:intron | 25.0% |
| ! | GTAGTCTGTTCATTATAAAT+GGG | - | chr1_2:63799829-63799848 | Msa0084400:intron | 25.0% |
| ! | TAGAAAATTATACAACTCAC+TGG | + | chr1_2:63800085-63800104 | None:intergenic | 25.0% |
| ! | AATTATGCAAAAAACCTTCA+TGG | + | chr1_2:63800387-63800406 | None:intergenic | 25.0% |
| ! | ACAGATGTCAAAATTAGTAT+GGG | + | chr1_2:63800590-63800609 | None:intergenic | 25.0% |
| ! | TACAGATGTCAAAATTAGTA+TGG | + | chr1_2:63800591-63800610 | None:intergenic | 25.0% |
| ! | TATTTGTGTCTGAGAAATAA+TGG | - | chr1_2:63800692-63800711 | Msa0084400:CDS | 25.0% |
| ! | ATATTACATAACACTATTCC+AGG | - | chr1_2:63800773-63800792 | Msa0084400:intron | 25.0% |
| ! | TACACTCCTAAAATAACTAT+TGG | - | chr1_2:63800825-63800844 | Msa0084400:intron | 25.0% |
| ! | ACACTCCTAAAATAACTATT+GGG | - | chr1_2:63800826-63800845 | Msa0084400:intron | 25.0% |
| !!! | AGTATCCCAATAGTTATTTT+AGG | + | chr1_2:63800834-63800853 | None:intergenic | 25.0% |
| ! | AAAAAGCAAAAACAACATCA+AGG | + | chr1_2:63801023-63801042 | None:intergenic | 25.0% |
| !!! | TCATTTGATTTTTGAGAAGA+AGG | - | chr1_2:63801126-63801145 | Msa0084400:intron | 25.0% |
| !!! | CATTTGATTTTTGAGAAGAA+GGG | - | chr1_2:63801127-63801146 | Msa0084400:intron | 25.0% |
| !!! | ATTTGATTTTTGAGAAGAAG+GGG | - | chr1_2:63801128-63801147 | Msa0084400:intron | 25.0% |
| AATGAGAAATTTCGTGTAGT+TGG | + | chr1_2:63796394-63796413 | None:intergenic | 30.0% | |
| AGTTGTATCCAGTAAGATTA+GGG | + | chr1_2:63796682-63796701 | None:intergenic | 30.0% | |
| AGTTAAGATCCAACAAATTG+GGG | + | chr1_2:63796707-63796726 | None:intergenic | 30.0% | |
| CAGTTAAGATCCAACAAATT+GGG | + | chr1_2:63796708-63796727 | None:intergenic | 30.0% | |
| ACAGTTAAGATCCAACAAAT+TGG | + | chr1_2:63796709-63796728 | None:intergenic | 30.0% | |
| ! | TTTTCGAATCTAGAAACTCA+TGG | + | chr1_2:63796744-63796763 | None:intergenic | 30.0% |
| ACTAACTGGGAATTTATGAT+AGG | - | chr1_2:63796917-63796936 | Msa0084400:intron | 30.0% | |
| TGGGAATTTATGATAGGATT+AGG | - | chr1_2:63796923-63796942 | Msa0084400:intron | 30.0% | |
| !! | TGTCTGAAATCGTATTTTGT+TGG | - | chr1_2:63797310-63797329 | Msa0084400:intron | 30.0% |
| !! | AATCGTATTTTGTTGGCTAA+AGG | - | chr1_2:63797317-63797336 | Msa0084400:intron | 30.0% |
| TGAGAGAGATCAATTGATAT+AGG | + | chr1_2:63797355-63797374 | None:intergenic | 30.0% | |
| GAGTGATAGAGAGATAATAT+AGG | - | chr1_2:63797530-63797549 | Msa0084400:CDS | 30.0% | |
| AAGAAATGAATGGTTAGGTA+AGG | + | chr1_2:63798070-63798089 | None:intergenic | 30.0% | |
| GGCTGAGAAGTAAAAAAAAA+AGG | + | chr1_2:63798178-63798197 | None:intergenic | 30.0% | |
| GATAACATGAAACTACAGAA+GGG | + | chr1_2:63798199-63798218 | None:intergenic | 30.0% | |
| AGATAACATGAAACTACAGA+AGG | + | chr1_2:63798200-63798219 | None:intergenic | 30.0% | |
| ! | GATAAAAGGGAGTATACATT+AGG | + | chr1_2:63798233-63798252 | None:intergenic | 30.0% |
| ! | GTATACTCCCTTTTATCTAA+AGG | - | chr1_2:63798236-63798255 | Msa0084400:intron | 30.0% |
| TAGAAGGCCTTTAGATAAAA+GGG | + | chr1_2:63798246-63798265 | None:intergenic | 30.0% | |
| ATAGAAGGCCTTTAGATAAA+AGG | + | chr1_2:63798247-63798266 | None:intergenic | 30.0% | |
| CTCAAACAACACATAATAGA+AGG | + | chr1_2:63798262-63798281 | None:intergenic | 30.0% | |
| !! | CTCAGACAATTTACTTTTGT+AGG | - | chr1_2:63798349-63798368 | Msa0084400:intron | 30.0% |
| !! | GTAGGTTGAAAATAGTTTTG+GGG | - | chr1_2:63798367-63798386 | Msa0084400:intron | 30.0% |
| GAAAATGAATTATAGCAGTG+TGG | + | chr1_2:63798439-63798458 | None:intergenic | 30.0% | |
| TAATAATGAAGAAATAGGCC+AGG | + | chr1_2:63798546-63798565 | None:intergenic | 30.0% | |
| TTAATATGGAAGCTGCTTAA+TGG | - | chr1_2:63798683-63798702 | Msa0084400:intron | 30.0% | |
| GTAGAAGTTCAATATTTGCT+AGG | - | chr1_2:63798784-63798803 | Msa0084400:intron | 30.0% | |
| TCAGCTAAGATTATGGAAAA+AGG | + | chr1_2:63798849-63798868 | None:intergenic | 30.0% | |
| TATTGATATGGAATATGGAG+AGG | + | chr1_2:63798944-63798963 | None:intergenic | 30.0% | |
| ! | ATCTTGTTTCTTTGTTAGGT+TGG | - | chr1_2:63798981-63799000 | Msa0084400:intron | 30.0% |
| TATCAGATATATGTAGAGCT+TGG | - | chr1_2:63799068-63799087 | Msa0084400:CDS | 30.0% | |
| ! | AGTTAATGCAGCAATTTTCA+AGG | + | chr1_2:63799216-63799235 | None:intergenic | 30.0% |
| ACATTTCTGATTTCGCTTAT+AGG | + | chr1_2:63799424-63799443 | None:intergenic | 30.0% | |
| !! | ATTTGTACTTTTTGATCTGG+AGG | - | chr1_2:63799532-63799551 | Msa0084400:intron | 30.0% |
| ! | AAGTTGTTATTCGTATCAAG+CGG | + | chr1_2:63799741-63799760 | None:intergenic | 30.0% |
| TACGAATAACAACTTCTGTT+TGG | - | chr1_2:63799746-63799765 | Msa0084400:intron | 30.0% | |
| !! | TGTTTGGTAATACAGCTTTT+TGG | - | chr1_2:63799762-63799781 | Msa0084400:intron | 30.0% |
| !! | GTTTGGTAATACAGCTTTTT+GGG | - | chr1_2:63799763-63799782 | Msa0084400:intron | 30.0% |
| TAAATTGATGCCAAAAAACG+TGG | + | chr1_2:63799805-63799824 | None:intergenic | 30.0% | |
| TATTAAGCACTATGTGATTC+AGG | - | chr1_2:63799953-63799972 | Msa0084400:intron | 30.0% | |
| AAAGAATAAGAAAACCTTGC+AGG | + | chr1_2:63800032-63800051 | None:intergenic | 30.0% | |
| ! | GCAAGGTTTTCTTATTCTTT+TGG | - | chr1_2:63800032-63800051 | Msa0084400:intron | 30.0% |
| GAAAAGATCAAATCCTTTGT+TGG | + | chr1_2:63800182-63800201 | None:intergenic | 30.0% | |
| ! | TTCTCATTTAGATCTGGAAT+CGG | + | chr1_2:63800217-63800236 | None:intergenic | 30.0% |
| ATAAGCTTCTCATTTAGATC+TGG | + | chr1_2:63800223-63800242 | None:intergenic | 30.0% | |
| AATGAGAAGCTTATTGTGTT+TGG | - | chr1_2:63800229-63800248 | Msa0084400:intron | 30.0% | |
| AAAGGAGTAACAAAAGGAAA+GGG | + | chr1_2:63800347-63800366 | None:intergenic | 30.0% | |
| AAAAGGAGTAACAAAAGGAA+AGG | + | chr1_2:63800348-63800367 | None:intergenic | 30.0% | |
| AGGATAAAAGGAGTAACAAA+AGG | + | chr1_2:63800353-63800372 | None:intergenic | 30.0% | |
| GCTAAAACAGAAAGGATAAA+AGG | + | chr1_2:63800365-63800384 | None:intergenic | 30.0% | |
| ! | TTGCATAATTTTTCATGTGC+TGG | - | chr1_2:63800397-63800416 | Msa0084400:intron | 30.0% |
| CAGATGTCAAAATTAGTATG+GGG | + | chr1_2:63800589-63800608 | None:intergenic | 30.0% | |
| ATAACTGACATTCAAACAGT+TGG | + | chr1_2:63800666-63800685 | None:intergenic | 30.0% | |
| !! | AGTTTGCTTATAACCTGTTT+TGG | - | chr1_2:63800920-63800939 | Msa0084400:intron | 30.0% |
| !! | TTTGATTTTTGAGAAGAAGG+GGG | - | chr1_2:63801129-63801148 | Msa0084400:intron | 30.0% |
| TTTGTGTATGCTTGTAAGAT+TGG | - | chr1_2:63801154-63801173 | Msa0084400:intron | 30.0% | |
| ! | TATTACAAAACTGGCCATTT+TGG | + | chr1_2:63801308-63801327 | None:intergenic | 30.0% |
| TCTTTATGCCCTAATCTTAC+TGG | - | chr1_2:63796671-63796690 | Msa0084400:three_prime_UTR | 35.0% | |
| CAGTTGTATCCAGTAAGATT+AGG | + | chr1_2:63796683-63796702 | None:intergenic | 35.0% | |
| !! | TGGTTTGTGACTCTTGATTT+TGG | - | chr1_2:63796887-63796906 | Msa0084400:CDS | 35.0% |
| TAGGATTAGGTTAAATGGCT+AGG | - | chr1_2:63796936-63796955 | Msa0084400:intron | 35.0% | |
| CTCTGTTACAACAAAGCAAA+AGG | - | chr1_2:63796972-63796991 | Msa0084400:intron | 35.0% | |
| ACAACAAAGCAAAAGGAAGA+AGG | - | chr1_2:63796979-63796998 | Msa0084400:intron | 35.0% | |
| CAACAAAGCAAAAGGAAGAA+GGG | - | chr1_2:63796980-63796999 | Msa0084400:intron | 35.0% | |
| ! | CTTGGTTGGATTTTTCCTTT+TGG | - | chr1_2:63797054-63797073 | Msa0084400:intron | 35.0% |
| AATGTCTGTATGTAGCCAAA+AGG | + | chr1_2:63797072-63797091 | None:intergenic | 35.0% | |
| !! | TTTTGGCTACATACAGACAT+TGG | - | chr1_2:63797071-63797090 | Msa0084400:intron | 35.0% |
| TTAGTGTGAGAAATGATACG+CGG | - | chr1_2:63797149-63797168 | Msa0084400:intron | 35.0% | |
| !!! | TTTTGGGATGCTATTGCTAT+AGG | - | chr1_2:63797278-63797297 | Msa0084400:intron | 35.0% |
| ATGCTATTGCTATAGGATAG+AGG | - | chr1_2:63797285-63797304 | Msa0084400:intron | 35.0% | |
| !!! | GTAAGTACTCCTGTCTTTTT+TGG | - | chr1_2:63797423-63797442 | Msa0084400:intron | 35.0% |
| GTGAATCAAACACTCTCTAA+TGG | + | chr1_2:63797457-63797476 | None:intergenic | 35.0% | |
| GACAAAAACTTGTCTCATCA+TGG | - | chr1_2:63797647-63797666 | Msa0084400:intron | 35.0% | |
| TTAGTGAGGGACAAGAATTT+CGG | - | chr1_2:63797671-63797690 | Msa0084400:intron | 35.0% | |
| TAAAAAACAGAGGACTGTAC+TGG | + | chr1_2:63797777-63797796 | None:intergenic | 35.0% | |
| ! | TTTGGTTTATGCTCTAGTTC+TGG | - | chr1_2:63797835-63797854 | Msa0084400:intron | 35.0% |
| ! | AAATAACTTGTCAGTCTCTG+AGG | - | chr1_2:63798125-63798144 | Msa0084400:intron | 35.0% |
| ATGAAACTTACAGCATATCC+AGG | + | chr1_2:63798413-63798432 | None:intergenic | 35.0% | |
| ATAAATTCGTCAACAGCTTC+AGG | + | chr1_2:63798626-63798645 | None:intergenic | 35.0% | |
| ! | AGCATCGAGCTAATATCTAT+GGG | + | chr1_2:63799094-63799113 | None:intergenic | 35.0% |
| !! | AAGCATCGAGCTAATATCTA+TGG | + | chr1_2:63799095-63799114 | None:intergenic | 35.0% |
| TGGTTAACTGGACATGATAT+AGG | - | chr1_2:63799136-63799155 | Msa0084400:intron | 35.0% | |
| ATAATCTGCTAGTGTTTGTG+TGG | + | chr1_2:63799167-63799186 | None:intergenic | 35.0% | |
| TTCGACACCTTATATGACAA+AGG | + | chr1_2:63799259-63799278 | None:intergenic | 35.0% | |
| !! | GTCATATAAGGTGTCGAATT+CGG | - | chr1_2:63799261-63799280 | Msa0084400:intron | 35.0% |
| GAGTACTAGGATTATTAGTG+TGG | - | chr1_2:63799287-63799306 | Msa0084400:intron | 35.0% | |
| ATCTCAATCAAGTACAGATG+TGG | + | chr1_2:63799328-63799347 | None:intergenic | 35.0% | |
| ! | TTTTGATCTGGAGGTTACTT+TGG | - | chr1_2:63799541-63799560 | Msa0084400:intron | 35.0% |
| CACTAACATAGCAATTCTAC+TGG | + | chr1_2:63799589-63799608 | None:intergenic | 35.0% | |
| AGACAAATCATAGGTTAGGT+TGG | + | chr1_2:63799890-63799909 | None:intergenic | 35.0% | |
| TTTGACTGCAGACAAATCAT+AGG | + | chr1_2:63799899-63799918 | None:intergenic | 35.0% | |
| ! | TGATTTGTCTGCAGTCAAAA+AGG | - | chr1_2:63799900-63799919 | Msa0084400:intron | 35.0% |
| GATTTGTCTGCAGTCAAAAA+GGG | - | chr1_2:63799901-63799920 | Msa0084400:intron | 35.0% | |
| !!! | TGGTTTTTTACAGTCAATCC+TGG | - | chr1_2:63800052-63800071 | Msa0084400:intron | 35.0% |
| GAATGCTTCATGTTTCATAC+TGG | + | chr1_2:63800131-63800150 | None:intergenic | 35.0% | |
| ! | AAACATGAAGCATTCATGCT+TGG | - | chr1_2:63800136-63800155 | Msa0084400:intron | 35.0% |
| TCATCCCTGTACAAAAGATT+TGG | + | chr1_2:63800954-63800973 | None:intergenic | 35.0% | |
| TTAGTTATGAACAGTGATGC+AGG | - | chr1_2:63801042-63801061 | Msa0084400:intron | 35.0% | |
| !! | TTGATTTTTGAGAAGAAGGG+GGG | - | chr1_2:63801130-63801149 | Msa0084400:intron | 35.0% |
| !!! | ATTTTGGCTCACTGCTAAAT+TGG | + | chr1_2:63801292-63801311 | None:intergenic | 35.0% |
| AATTTAGCAGTGAGCCAAAA+TGG | - | chr1_2:63801291-63801310 | Msa0084400:five_prime_UTR | 35.0% | |
| GAGAAATTTCGTGTAGTTGG+AGG | + | chr1_2:63796391-63796410 | None:intergenic | 40.0% | |
| AAAGAGAGGAGTGAAGTAGA+AGG | + | chr1_2:63796524-63796543 | None:intergenic | 40.0% | |
| TACAACTGTCCCCAATTTGT+TGG | - | chr1_2:63796695-63796714 | Msa0084400:three_prime_UTR | 40.0% | |
| CTACGCTTTGATTCTTGTCT+TGG | - | chr1_2:63797036-63797055 | Msa0084400:intron | 40.0% | |
| GCTTTGATTCTTGTCTTGGT+TGG | - | chr1_2:63797040-63797059 | Msa0084400:intron | 40.0% | |
| ! | CATACAGACATTGGTCTAAC+AGG | - | chr1_2:63797080-63797099 | Msa0084400:intron | 40.0% |
| ! | TGATCTCTCTCAGTCTTTTG+AGG | - | chr1_2:63797363-63797382 | Msa0084400:intron | 40.0% |
| ! | TTTGAGGTGGTAGAACCTTT+AGG | - | chr1_2:63797379-63797398 | Msa0084400:intron | 40.0% |
| TTGAGGTGGTAGAACCTTTA+GGG | - | chr1_2:63797380-63797399 | Msa0084400:intron | 40.0% | |
| !!! | AGTACTCCTGTCTTTTTTGG+TGG | - | chr1_2:63797426-63797445 | Msa0084400:intron | 40.0% |
| GTTCTACCACCAAAAAAGAC+AGG | + | chr1_2:63797435-63797454 | None:intergenic | 40.0% | |
| TGTCTCATCATGGTTTAGTG+AGG | - | chr1_2:63797657-63797676 | Msa0084400:intron | 40.0% | |
| GTCTCATCATGGTTTAGTGA+GGG | - | chr1_2:63797658-63797677 | Msa0084400:intron | 40.0% | |
| ATGGAACTAGACAAAACAGG+TGG | + | chr1_2:63797715-63797734 | None:intergenic | 40.0% | |
| !! | ACCTGTTTTGTCTAGTTCCA+TGG | - | chr1_2:63797714-63797733 | Msa0084400:CDS | 40.0% |
| GTGACATCAGAACAAAGCTA+AGG | + | chr1_2:63797815-63797834 | None:intergenic | 40.0% | |
| ! | GCTTTGTTCTGATGTCACTT+TGG | - | chr1_2:63797817-63797836 | Msa0084400:intron | 40.0% |
| !! | GGCTGTTATTGGTTTGTAAC+AGG | - | chr1_2:63797990-63798009 | Msa0084400:intron | 40.0% |
| ! | AAAGGGAGTATACATTAGGC+AGG | + | chr1_2:63798229-63798248 | None:intergenic | 40.0% |
| ATGGAAGCTGCTTAATGGTT+TGG | - | chr1_2:63798688-63798707 | Msa0084400:intron | 40.0% | |
| TGGAAGCTGCTTAATGGTTT+GGG | - | chr1_2:63798689-63798708 | Msa0084400:intron | 40.0% | |
| ! | GGTTTGGTTAGACTTGATGT+TGG | - | chr1_2:63798710-63798729 | Msa0084400:intron | 40.0% |
| ! | TCGAATTCGGTTAGAGTACT+AGG | - | chr1_2:63799274-63799293 | Msa0084400:intron | 40.0% |
| TATTCGTATCAAGCGGTTGT+TGG | + | chr1_2:63799734-63799753 | None:intergenic | 40.0% | |
| !! | TGGTAATACAGCTTTTTGGG+TGG | - | chr1_2:63799766-63799785 | Msa0084400:intron | 40.0% |
| !!! | GATGTTTCTGCCACGTTTTT+TGG | - | chr1_2:63799792-63799811 | Msa0084400:intron | 40.0% |
| CTGCAGACAAATCATAGGTT+AGG | + | chr1_2:63799894-63799913 | None:intergenic | 40.0% | |
| !! | AGTCAAAAAGGGCACTTCAA+AGG | - | chr1_2:63799912-63799931 | Msa0084400:intron | 40.0% |
| !! | GTCAAAAAGGGCACTTCAAA+GGG | - | chr1_2:63799913-63799932 | Msa0084400:intron | 40.0% |
| ATTCATGCTTGGAACATCCA+AGG | - | chr1_2:63800147-63800166 | Msa0084400:intron | 40.0% | |
| TTCATGCTTGGAACATCCAA+GGG | - | chr1_2:63800148-63800167 | Msa0084400:intron | 40.0% | |
| CCTTCATGGCTAAAACAGAA+AGG | + | chr1_2:63800373-63800392 | None:intergenic | 40.0% | |
| !!! | CCTTTCTGTTTTAGCCATGA+AGG | - | chr1_2:63800370-63800389 | Msa0084400:intron | 40.0% |
| !! | TTTCATGTGCTGGCTGTTTA+TGG | - | chr1_2:63800407-63800426 | Msa0084400:intron | 40.0% |
| ! | TGGAGTTGCTATTCTGTGAT+TGG | - | chr1_2:63800615-63800634 | Msa0084400:CDS | 40.0% |
| !! | CTGTGATTGGTTGACTTGTT+CGG | - | chr1_2:63800628-63800647 | Msa0084400:CDS | 40.0% |
| !! | TGTGATTGGTTGACTTGTTC+GGG | - | chr1_2:63800629-63800648 | Msa0084400:CDS | 40.0% |
| ATTCCAGGAAATCGAAGAAG+TGG | - | chr1_2:63800788-63800807 | Msa0084400:intron | 40.0% | |
| TATCCACTTCTTCGATTTCC+TGG | + | chr1_2:63800794-63800813 | None:intergenic | 40.0% | |
| TGATGTGACTCTCAAACAGA+AGG | - | chr1_2:63800854-63800873 | Msa0084400:intron | 40.0% | |
| !!! | TATAACCTGTTTTGGTGCTC+CGG | - | chr1_2:63800928-63800947 | Msa0084400:intron | 40.0% |
| ! | TGAACCTTTAGAAGTTCACC+TGG | - | chr1_2:63800974-63800993 | Msa0084400:intron | 40.0% |
| ! | GAACCTTTAGAAGTTCACCT+GGG | - | chr1_2:63800975-63800994 | Msa0084400:intron | 40.0% |
| TTTCGTGTAGTTGGAGGCTT+TGG | + | chr1_2:63796385-63796404 | None:intergenic | 45.0% | |
| AATGGCTAGGATCAAACCTC+AGG | - | chr1_2:63796949-63796968 | Msa0084400:intron | 45.0% | |
| ! | CTTTGTTGTAACAGAGCCTG+AGG | + | chr1_2:63796968-63796987 | None:intergenic | 45.0% |
| AAAGGAAGAAGGGACCTTCT+CGG | - | chr1_2:63796990-63797009 | Msa0084400:intron | 45.0% | |
| !! | TCTCTCTCAGTCTTTTGAGG+TGG | - | chr1_2:63797366-63797385 | Msa0084400:intron | 45.0% |
| GTGAATCAAACGCTCCCTAA+AGG | + | chr1_2:63797397-63797416 | None:intergenic | 45.0% | |
| CTAGACAAAACAGGTGGCAA+GGG | + | chr1_2:63797709-63797728 | None:intergenic | 45.0% | |
| ACTAGACAAAACAGGTGGCA+AGG | + | chr1_2:63797710-63797729 | None:intergenic | 45.0% | |
| GCCATGGAACTAGACAAAAC+AGG | + | chr1_2:63797718-63797737 | None:intergenic | 45.0% | |
| !!! | GCTCTAGTTCTGGCAGATTT+TGG | - | chr1_2:63797845-63797864 | Msa0084400:intron | 45.0% |
| ! | TAACTTGTCAGTCTCTGAGG+AGG | - | chr1_2:63798128-63798147 | Msa0084400:intron | 45.0% |
| ! | TGAGTTTTCCCATTGAGACG+AGG | - | chr1_2:63798278-63798297 | Msa0084400:intron | 45.0% |
| CAGAAAGTCCTCGTCTCAAT+GGG | + | chr1_2:63798289-63798308 | None:intergenic | 45.0% | |
| TCGAAGAAATCTGAGCTACC+TGG | - | chr1_2:63798392-63798411 | Msa0084400:intron | 45.0% | |
| ! | GCTGCTTAATGGTTTGGGTT+TGG | - | chr1_2:63798694-63798713 | Msa0084400:intron | 45.0% |
| ! | GCTCGATGCTTTAGTTTCTC+TGG | - | chr1_2:63799104-63799123 | Msa0084400:CDS | 45.0% |
| !! | AGTTTCTCTGGACTAGTGCA+TGG | - | chr1_2:63799116-63799135 | Msa0084400:CDS | 45.0% |
| !! | TGGACTAGTGCATGGTTAAC+TGG | - | chr1_2:63799124-63799143 | Msa0084400:CDS | 45.0% |
| CAAGTACAGATGTGGTACAG+CGG | + | chr1_2:63799320-63799339 | None:intergenic | 45.0% | |
| ! | CCAGAGGGTGTGTTTATTTC+AGG | + | chr1_2:63799684-63799703 | None:intergenic | 45.0% |
| CCTGAAATAAACACACCCTC+TGG | - | chr1_2:63799681-63799700 | Msa0084400:intron | 45.0% | |
| AAGCACTATGTGATTCAGGC+AGG | - | chr1_2:63799957-63799976 | Msa0084400:intron | 45.0% | |
| AGCACTATGTGATTCAGGCA+GGG | - | chr1_2:63799958-63799977 | Msa0084400:intron | 45.0% | |
| GCAGCTGATTGGAACTTAAG+AGG | - | chr1_2:63799999-63800018 | Msa0084400:intron | 45.0% | |
| TAAGAGGAAAGCAACCTGCA+AGG | - | chr1_2:63800015-63800034 | Msa0084400:intron | 45.0% | |
| TTTGTTGGTGTGTTTGCCCT+TGG | + | chr1_2:63800167-63800186 | None:intergenic | 45.0% | |
| AAGGGCAAACACACCAACAA+AGG | - | chr1_2:63800166-63800185 | Msa0084400:intron | 45.0% | |
| TGTGTTTGGACAAGTCGTCA+AGG | - | chr1_2:63800243-63800262 | Msa0084400:intron | 45.0% | |
| GTGTTTGGACAAGTCGTCAA+GGG | - | chr1_2:63800244-63800263 | Msa0084400:intron | 45.0% | |
| CTCTCAAACAGAAGGTCTGA+AGG | - | chr1_2:63800862-63800881 | Msa0084400:intron | 45.0% | |
| ! | TCCGGCCAAATCTTTTGTAC+AGG | - | chr1_2:63800946-63800965 | Msa0084400:intron | 45.0% |
| CCCTGTACAAAAGATTTGGC+CGG | + | chr1_2:63800950-63800969 | None:intergenic | 45.0% | |
| ! | CCGGCCAAATCTTTTGTACA+GGG | - | chr1_2:63800947-63800966 | Msa0084400:intron | 45.0% |
| CAACCCAGGTGAACTTCTAA+AGG | + | chr1_2:63800981-63801000 | None:intergenic | 45.0% | |
| CAACATCAAGGCTCAAAAGC+TGG | + | chr1_2:63801011-63801030 | None:intergenic | 45.0% | |
| GGTGCAGTGAATGGATCGTA+CGG | + | chr1_2:63796500-63796519 | None:intergenic | 50.0% | |
| GTAGAAGGTGGTGCAGTGAA+TGG | + | chr1_2:63796509-63796528 | None:intergenic | 50.0% | |
| GAGAGGAGTGAAGTAGAAGG+TGG | + | chr1_2:63796521-63796540 | None:intergenic | 50.0% | |
| CCTGCGAGATGTTGAAAGAG+AGG | + | chr1_2:63796538-63796557 | None:intergenic | 50.0% | |
| CCTCTCTTTCAACATCTCGC+AGG | - | chr1_2:63796535-63796554 | Msa0084400:three_prime_UTR | 50.0% | |
| CAAAACAGGTGGCAAGGGAT+CGG | + | chr1_2:63797704-63797723 | None:intergenic | 50.0% | |
| GCAGAAAGTCCTCGTCTCAA+TGG | + | chr1_2:63798290-63798309 | None:intergenic | 50.0% | |
| TGAGACGAGGACTTTCTGCA+AGG | - | chr1_2:63798291-63798310 | Msa0084400:intron | 50.0% | |
| GCACTATGTGATTCAGGCAG+GGG | - | chr1_2:63799959-63799978 | Msa0084400:intron | 50.0% | |
| TATGTGATTCAGGCAGGGGA+TGG | - | chr1_2:63799963-63799982 | Msa0084400:intron | 50.0% | |
| CAACTCACTGGATCATCACC+AGG | + | chr1_2:63800073-63800092 | None:intergenic | 50.0% | |
| CAAGGGAGAGGATGTTGTTC+AGG | - | chr1_2:63800261-63800280 | Msa0084400:intron | 50.0% | |
| GCAGTGAATGGATCGTACGG+CGG | + | chr1_2:63796497-63796516 | None:intergenic | 55.0% | |
| TCCGCAAGCGCAACTGTTTG+TGG | - | chr1_2:63799706-63799725 | Msa0084400:intron | 55.0% | |
| CCCACAAACAGTTGCGCTTG+CGG | + | chr1_2:63799710-63799729 | None:intergenic | 55.0% | |
| CCGCAAGCGCAACTGTTTGT+GGG | - | chr1_2:63799707-63799726 | Msa0084400:intron | 55.0% | |
| CGCAAGCGCAACTGTTTGTG+GGG | - | chr1_2:63799708-63799727 | Msa0084400:intron | 55.0% | |
| ATTCAGGCAGGGGATGGTCA+AGG | - | chr1_2:63799969-63799988 | Msa0084400:intron | 55.0% | |
| AAGGCACAGGAGCAGCTGAT+TGG | - | chr1_2:63799988-63800007 | Msa0084400:intron | 55.0% | |
| TGGACAAGTCGTCAAGGGAG+AGG | - | chr1_2:63800249-63800268 | Msa0084400:intron | 55.0% | |
| ! | TTTGGCCGGAGCACCAAAAC+AGG | + | chr1_2:63800936-63800955 | None:intergenic | 55.0% |
| AAGCTGGATCGAAGCAACCC+AGG | + | chr1_2:63800995-63801014 | None:intergenic | 55.0% | |
| !! | GGGACCTTCTCGGATTAGCG+CGG | - | chr1_2:63797000-63797019 | Msa0084400:intron | 60.0% |
| CTAGCCGCGCTAATCCGAGA+AGG | + | chr1_2:63797007-63797026 | None:intergenic | 60.0% | |
| TTGCGCTTGCGGACACCAGA+GGG | + | chr1_2:63799699-63799718 | None:intergenic | 60.0% | |
| GTTGCGCTTGCGGACACCAG+AGG | + | chr1_2:63799700-63799719 | None:intergenic | 65.0% | |
| GCAGGGGATGGTCAAGGCAC+AGG | - | chr1_2:63799975-63799994 | Msa0084400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 63796371 | 63801343 | 63796371 | ID=Msa0084400;Name=Msa0084400 |
| chr1_2 | mRNA | 63796371 | 63801343 | 63796371 | ID=Msa0084400-mRNA-1;Parent=Msa0084400;Name=Msa0084400-mRNA-1;_AED=0.14;_eAED=0.14;_QI=197|1|1|1|0.85|0.75|8|462|230 |
| chr1_2 | exon | 63796371 | 63796919 | 63796371 | ID=Msa0084400-mRNA-1:exon:21443;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63797432 | 63797582 | 63797432 | ID=Msa0084400-mRNA-1:exon:21442;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63797678 | 63797800 | 63797678 | ID=Msa0084400-mRNA-1:exon:21441;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63799060 | 63799145 | 63799060 | ID=Msa0084400-mRNA-1:exon:21440;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63799293 | 63799343 | 63799293 | ID=Msa0084400-mRNA-1:exon:21439;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63799565 | 63799607 | 63799565 | ID=Msa0084400-mRNA-1:exon:21438;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63800613 | 63800775 | 63800613 | ID=Msa0084400-mRNA-1:exon:21437;Parent=Msa0084400-mRNA-1 |
| chr1_2 | exon | 63801158 | 63801343 | 63801158 | ID=Msa0084400-mRNA-1:exon:21436;Parent=Msa0084400-mRNA-1 |
| chr1_2 | five_prime_UTR | 63801158 | 63801343 | 63801158 | ID=Msa0084400-mRNA-1:five_prime_utr;Parent=Msa0084400-mRNA-1 |
| chr1_2 | five_prime_UTR | 63800765 | 63800775 | 63800765 | ID=Msa0084400-mRNA-1:five_prime_utr;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63800613 | 63800764 | 63800613 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63799565 | 63799607 | 63799565 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63799293 | 63799343 | 63799293 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63799060 | 63799145 | 63799060 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63797678 | 63797800 | 63797678 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63797432 | 63797582 | 63797432 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | CDS | 63796833 | 63796919 | 63796833 | ID=Msa0084400-mRNA-1:cds;Parent=Msa0084400-mRNA-1 |
| chr1_2 | three_prime_UTR | 63796371 | 63796832 | 63796371 | ID=Msa0084400-mRNA-1:three_prime_utr;Parent=Msa0084400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
