Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401790 | PNX59383.1 | 63.462 | 52 | 19 | 0 | 19 | 70 | 18 | 69 | 2.49e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401790 | A0A2K3JZ89 | 63.462 | 52 | 19 | 0 | 19 | 70 | 18 | 69 | 1.19e-11 | 65.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188830 | Msa0401790 | 0.807007 | 6.237180e-50 | -8.615850e-47 |
| Msa0210450 | Msa0401790 | 0.801037 | 1.087587e-48 | -8.615850e-47 |
| Msa0217400 | Msa0401790 | 0.806595 | 7.623080e-50 | -8.615850e-47 |
| Msa0220580 | Msa0401790 | 0.801718 | 7.889514e-49 | -8.615850e-47 |
| Msa0223260 | Msa0401790 | 0.802697 | 4.960756e-49 | -8.615850e-47 |
| Msa0226890 | Msa0401790 | 0.815378 | 9.533195e-52 | -8.615850e-47 |
| Msa0373930 | Msa0401790 | 0.806958 | 6.388372e-50 | -8.615850e-47 |
| Msa0376590 | Msa0401790 | 0.813411 | 2.594368e-51 | -8.615850e-47 |
| Msa0379640 | Msa0401790 | 0.804303 | 2.305102e-49 | -8.615850e-47 |
| Msa0389340 | Msa0401790 | 0.812576 | 3.955061e-51 | -8.615850e-47 |
| Msa0401790 | Msa0426360 | 0.814626 | 1.399865e-51 | -8.615850e-47 |
| Msa0401790 | Msa0426400 | 0.805439 | 1.334152e-49 | -8.615850e-47 |
| Msa0401790 | Msa0431690 | 0.829901 | 3.970457e-55 | -8.615850e-47 |
| Msa0401790 | Msa0437990 | 0.812592 | 3.924121e-51 | -8.615850e-47 |
| Msa0401790 | Msa0442850 | 0.801947 | 7.078817e-49 | -8.615850e-47 |
| Msa0401790 | Msa0466390 | 0.800776 | 1.229921e-48 | -8.615850e-47 |
| Msa0401790 | Msa0473240 | 0.800506 | 1.395844e-48 | -8.615850e-47 |
| Msa0401790 | Msa0484780 | 0.828139 | 1.061491e-54 | -8.615850e-47 |
| Msa0401790 | Msa0516370 | 0.809809 | 1.574863e-50 | -8.615850e-47 |
| Msa0401790 | Msa0536220 | 0.809943 | 1.473706e-50 | -8.615850e-47 |
| Msa0401790 | Msa0555020 | 0.810336 | 1.212436e-50 | -8.615850e-47 |
| Msa0401790 | Msa0558690 | 0.828816 | 7.285057e-55 | -8.615850e-47 |
| Msa0401790 | Msa0585230 | 0.806546 | 7.805915e-50 | -8.615850e-47 |
| Msa0401790 | Msa0657610 | 0.804333 | 2.271557e-49 | -8.615850e-47 |
| Msa0401790 | Msa0657970 | 0.811474 | 6.874840e-51 | -8.615850e-47 |
| Msa0401790 | Msa0658570 | 0.821180 | 4.630309e-53 | -8.615850e-47 |
| Msa0401790 | Msa0663240 | 0.810115 | 1.352951e-50 | -8.615850e-47 |
| Msa0401790 | Msa0669440 | 0.823143 | 1.622930e-53 | -8.615850e-47 |
| Msa0401790 | Msa0688480 | 0.805489 | 1.302176e-49 | -8.615850e-47 |
| Msa0401790 | Msa0692230 | 0.807954 | 3.927026e-50 | -8.615850e-47 |
| Msa0401790 | Msa0693380 | 0.830669 | 2.577759e-55 | -8.615850e-47 |
| Msa0401790 | Msa0766630 | 0.803380 | 3.583308e-49 | -8.615850e-47 |
| Msa0401790 | Msa0777850 | 0.811917 | 5.507495e-51 | -8.615850e-47 |
| Msa0401790 | Msa0828540 | 0.800180 | 1.626251e-48 | -8.615850e-47 |
| Msa0401790 | Msa0844900 | 0.802530 | 5.370182e-49 | -8.615850e-47 |
| Msa0401790 | Msa0897880 | 0.808472 | 3.045816e-50 | -8.615850e-47 |
| Msa0401790 | Msa0907070 | 0.828766 | 7.491759e-55 | -8.615850e-47 |
| Msa0401790 | Msa0909120 | 0.800096 | 1.691621e-48 | -8.615850e-47 |
| Msa0401790 | Msa0942200 | 0.806823 | 6.823226e-50 | -8.615850e-47 |
| Msa0401790 | Msa0954550 | 0.806402 | 8.372028e-50 | -8.615850e-47 |
| Msa0401790 | Msa0969520 | 0.805803 | 1.118776e-49 | -8.615850e-47 |
| Msa0401790 | Msa0975220 | 0.805908 | 1.063355e-49 | -8.615850e-47 |
| Msa0401790 | Msa1014540 | 0.807659 | 4.536028e-50 | -8.615850e-47 |
| Msa0401790 | Msa1015790 | 0.800566 | 1.357369e-48 | -8.615850e-47 |
| Msa0401790 | Msa1027290 | 0.810563 | 1.083350e-50 | -8.615850e-47 |
| Msa0401790 | Msa1059570 | 0.824934 | 6.168529e-54 | -8.615850e-47 |
| Msa0401790 | Msa1075220 | -0.814135 | 1.796993e-51 | -8.615850e-47 |
| Msa0401790 | Msa1079180 | 0.806499 | 7.987613e-50 | -8.615850e-47 |
| Msa0401790 | Msa1082500 | 0.827466 | 1.540548e-54 | -8.615850e-47 |
| Msa0401790 | Msa1084260 | 0.801318 | 9.529150e-49 | -8.615850e-47 |
| Msa0401790 | Msa1085300 | 0.808388 | 3.173411e-50 | -8.615850e-47 |
| Msa0401790 | Msa1090260 | 0.802062 | 6.703456e-49 | -8.615850e-47 |
| Msa0401790 | Msa1116130 | -0.808061 | 3.726736e-50 | -8.615850e-47 |
| Msa0401790 | Msa1139000 | -0.800416 | 1.456492e-48 | -8.615850e-47 |
| Msa0401790 | Msa1162550 | -0.816227 | 6.164368e-52 | -8.615850e-47 |
| Msa0401790 | Msa1170730 | 0.809708 | 1.655907e-50 | -8.615850e-47 |
| Msa0401790 | Msa1186060 | 0.805014 | 1.637766e-49 | -8.615850e-47 |
| Msa0401790 | Msa1203250 | 0.802195 | 6.295691e-49 | -8.615850e-47 |
| Msa0401790 | Msa1229600 | 0.801585 | 8.400598e-49 | -8.615850e-47 |
| Msa0401790 | Msa1233500 | 0.803887 | 2.813373e-49 | -8.615850e-47 |
| Msa0401790 | Msa1242220 | 0.804877 | 1.749399e-49 | -8.615850e-47 |
| Msa0401790 | Msa1247250 | 0.814016 | 1.909330e-51 | -8.615850e-47 |
| Msa0401790 | Msa1271300 | 0.817960 | 2.514819e-52 | -8.615850e-47 |
| Msa0401790 | Msa1279210 | 0.801136 | 1.038235e-48 | -8.615850e-47 |
| Msa0401790 | Msa1283860 | 0.826869 | 2.140941e-54 | -8.615850e-47 |
| Msa0401790 | Msa1288420 | 0.807949 | 3.936278e-50 | -8.615850e-47 |
| Msa0401790 | Msa1306850 | 0.811780 | 5.900098e-51 | -8.615850e-47 |
| Msa0401790 | Msa1314340 | 0.818277 | 2.131547e-52 | -8.615850e-47 |
| Msa0401790 | Msa1322890 | 0.822059 | 2.900759e-53 | -8.615850e-47 |
| Msa0401790 | Msa1324780 | 0.833872 | 4.154869e-56 | -8.615850e-47 |
| Msa0401790 | Msa1336490 | 0.810482 | 1.127631e-50 | -8.615850e-47 |
| Msa0401790 | Msa1351620 | 0.806820 | 6.833008e-50 | -8.615850e-47 |
| Msa0401790 | Msa1357530 | 0.816082 | 6.641360e-52 | -8.615850e-47 |
| Msa0401790 | Msa1362880 | 0.806851 | 6.731078e-50 | -8.615850e-47 |
| Msa0401790 | Msa1372760 | 0.818178 | 2.244650e-52 | -8.615850e-47 |
| Msa0401790 | Msa1376890 | 0.816472 | 5.434797e-52 | -8.615850e-47 |
| Msa0401790 | Msa1384350 | 0.814607 | 1.413628e-51 | -8.615850e-47 |
| Msa0401790 | Msa1390050 | 0.819539 | 1.101437e-52 | -8.615850e-47 |
| Msa0401790 | Msa1392260 | 0.812258 | 4.641974e-51 | -8.615850e-47 |
| Msa0401790 | Msa1393410 | 0.800633 | 1.314887e-48 | -8.615850e-47 |
| Msa0401790 | Msa1411020 | 0.821987 | 3.014466e-53 | -8.615850e-47 |
| Msa0401790 | Msa1420490 | 0.803212 | 3.883444e-49 | -8.615850e-47 |
| Msa0401790 | Msa1423390 | 0.801441 | 8.989337e-49 | -8.615850e-47 |
| Msa0401790 | Msa1424290 | 0.820921 | 5.312415e-53 | -8.615850e-47 |
| Msa0401790 | Msa1429900 | 0.811248 | 7.699709e-51 | -8.615850e-47 |
| Msa0401790 | Msa1434350 | 0.818203 | 2.215316e-52 | -8.615850e-47 |
| Msa0401790 | Msa1439320 | 0.821462 | 3.986715e-53 | -8.615850e-47 |
| Msa0401790 | Msa1440370 | 0.802495 | 5.459636e-49 | -8.615850e-47 |
| Msa0401790 | Msa1440810 | 0.806748 | 7.075798e-50 | -8.615850e-47 |
| Msa0401790 | Msa1451620 | -0.801646 | 8.161560e-49 | -8.615850e-47 |
| Msa0401790 | Msa1454120 | 0.802257 | 6.112462e-49 | -8.615850e-47 |
| Msa0401790 | Msa1454860 | 0.806268 | 8.932711e-50 | -8.615850e-47 |
| Msa0243100 | Msa0401790 | 0.809818 | 1.567983e-50 | -8.615850e-47 |
| Msa0258760 | Msa0401790 | 0.820685 | 6.018375e-53 | -8.615850e-47 |
| Msa0265380 | Msa0401790 | 0.808943 | 2.415373e-50 | -8.615850e-47 |
| Msa0270100 | Msa0401790 | 0.810123 | 1.347609e-50 | -8.615850e-47 |
| Msa0287650 | Msa0401790 | 0.801243 | 9.871230e-49 | -8.615850e-47 |
| Msa0288100 | Msa0401790 | 0.800779 | 1.228057e-48 | -8.615850e-47 |
| Msa0323080 | Msa0401790 | 0.812699 | 3.718127e-51 | -8.615850e-47 |
| Msa0323620 | Msa0401790 | 0.817272 | 3.594062e-52 | -8.615850e-47 |
| Msa0338110 | Msa0401790 | 0.809646 | 1.707216e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401790 | MtrunA17_Chr5g0399151 | 77.273 | 44 | 10 | 0 | 27 | 70 | 267 | 310 | 1.23e-14 | 67.0 |
| Msa0401790 | MtrunA17_Chr4g0072141 | 84.375 | 32 | 5 | 0 | 1 | 32 | 98 | 129 | 2.28e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGATCTAAAGGCTTAA+AGG | 0.218793 | 3_2:+28652275 | Msa0401790:intron |
| ATCTAAAGGCTTAAAGGCTT+TGG | 0.275121 | 3_2:+28652281 | Msa0401790:intron |
| TTTATTATTAATGCTGGTTC+TGG | 0.287893 | 3_2:+28651879 | Msa0401790:CDS |
| ATGATAAGAGCTTACGCTTT+GGG | 0.347397 | 3_2:-28652333 | None:intergenic |
| AAAATCAAATATCATGCAAA+TGG | 0.367440 | 3_2:+28651566 | Msa0401790:CDS |
| TCTTCTGAGACTATTTCAAT+AGG | 0.407520 | 3_2:-28651602 | None:intergenic |
| AAATCAAATATCATGCAAAT+GGG | 0.412981 | 3_2:+28651567 | Msa0401790:CDS |
| AAATTCTTTATTATTAATGC+TGG | 0.441394 | 3_2:+28651873 | Msa0401790:CDS |
| AATGATAAGAGCTTACGCTT+TGG | 0.453757 | 3_2:-28652334 | None:intergenic |
| TGTATCAACCTCTAGCTGAC+AGG | 0.505962 | 3_2:+28652035 | Msa0401790:intron |
| TTGCTACCGTGCGTTCACTT+AGG | 0.512623 | 3_2:-28651935 | None:intergenic |
| GTTCTGGCTTTATGATGTTG+CGG | 0.558128 | 3_2:+28651895 | Msa0401790:CDS |
| GATGTTGCGGAAAGCGGTGA+AGG | 0.561562 | 3_2:+28651908 | Msa0401790:CDS |
| ATGGTTCACGAACTCACAAA+GGG | 0.580731 | 3_2:+28651536 | Msa0401790:CDS |
| GGCATTCCTAAGTGAACGCA+CGG | 0.591999 | 3_2:+28651929 | Msa0401790:CDS |
| TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 3_2:+28652307 | Msa0401790:CDS |
| CTTTATGATGTTGCGGAAAG+CGG | 0.613550 | 3_2:+28651902 | Msa0401790:CDS |
| AATCAAATATCATGCAAATG+GGG | 0.623882 | 3_2:+28651568 | Msa0401790:CDS |
| TATGGTTCACGAACTCACAA+AGG | 0.632329 | 3_2:+28651535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCAACTTCAATA+GGG | - | chr3_2:28651827-28651846 | None:intergenic | 15.0% |
| !! | AAATTCTTTATTATTAATGC+TGG | + | chr3_2:28651873-28651892 | Msa0401790:CDS | 15.0% |
| !!! | AATTTTAATCAACTTCAATA+GGG | - | chr3_2:28651827-28651846 | None:intergenic | 15.0% |
| !! | AAATTCTTTATTATTAATGC+TGG | + | chr3_2:28651873-28651892 | Msa0401790:CDS | 15.0% |
| !! | AAAATCAAATATCATGCAAA+TGG | + | chr3_2:28651566-28651585 | Msa0401790:CDS | 20.0% |
| !! | AAATCAAATATCATGCAAAT+GGG | + | chr3_2:28651567-28651586 | Msa0401790:CDS | 20.0% |
| !!! | GAATTTTAATCAACTTCAAT+AGG | - | chr3_2:28651828-28651847 | None:intergenic | 20.0% |
| !! | AAAATCAAATATCATGCAAA+TGG | + | chr3_2:28651566-28651585 | Msa0401790:CDS | 20.0% |
| !! | AAATCAAATATCATGCAAAT+GGG | + | chr3_2:28651567-28651586 | Msa0401790:CDS | 20.0% |
| !!! | GAATTTTAATCAACTTCAAT+AGG | - | chr3_2:28651828-28651847 | None:intergenic | 20.0% |
| ! | AATCAAATATCATGCAAATG+GGG | + | chr3_2:28651568-28651587 | Msa0401790:CDS | 25.0% |
| !!! | TTTATTATTAATGCTGGTTC+TGG | + | chr3_2:28651879-28651898 | Msa0401790:CDS | 25.0% |
| !! | ATACAAAATTCGTTTTACCT+AGG | - | chr3_2:28652144-28652163 | None:intergenic | 25.0% |
| ! | AGTAACATATTCATCAGAAA+AGG | - | chr3_2:28652211-28652230 | None:intergenic | 25.0% |
| ! | AATGAAACTCTTAGATCTAA+AGG | + | chr3_2:28652267-28652286 | Msa0401790:intron | 25.0% |
| ! | AATCAAATATCATGCAAATG+GGG | + | chr3_2:28651568-28651587 | Msa0401790:CDS | 25.0% |
| !!! | TTTATTATTAATGCTGGTTC+TGG | + | chr3_2:28651879-28651898 | Msa0401790:CDS | 25.0% |
| !! | ATACAAAATTCGTTTTACCT+AGG | - | chr3_2:28652144-28652163 | None:intergenic | 25.0% |
| ! | AGTAACATATTCATCAGAAA+AGG | - | chr3_2:28652211-28652230 | None:intergenic | 25.0% |
| ! | AATGAAACTCTTAGATCTAA+AGG | + | chr3_2:28652267-28652286 | Msa0401790:intron | 25.0% |
| !! | TCTTCTGAGACTATTTCAAT+AGG | - | chr3_2:28651605-28651624 | None:intergenic | 30.0% |
| TGATAGCAATTATTATCCTG+AGG | + | chr3_2:28651626-28651645 | Msa0401790:intron | 30.0% | |
| CTTAATCACACATTAATAGC+AGG | - | chr3_2:28651700-28651719 | None:intergenic | 30.0% | |
| CAACAAAATATAGTTGTGCA+AGG | - | chr3_2:28652017-28652036 | None:intergenic | 30.0% | |
| AGTTGCTACTGAAAAAATCA+TGG | - | chr3_2:28652175-28652194 | None:intergenic | 30.0% | |
| !!! | GATTTTTTCAGTAGCAACTT+AGG | + | chr3_2:28652176-28652195 | Msa0401790:intron | 30.0% |
| TCACAAATAGATCTGATTGT+AGG | - | chr3_2:28652235-28652254 | None:intergenic | 30.0% | |
| TCTTAGATCTAAAGGCTTAA+AGG | + | chr3_2:28652275-28652294 | Msa0401790:intron | 30.0% | |
| !! | TCTTCTGAGACTATTTCAAT+AGG | - | chr3_2:28651605-28651624 | None:intergenic | 30.0% |
| TGATAGCAATTATTATCCTG+AGG | + | chr3_2:28651626-28651645 | Msa0401790:intron | 30.0% | |
| CTTAATCACACATTAATAGC+AGG | - | chr3_2:28651700-28651719 | None:intergenic | 30.0% | |
| CAACAAAATATAGTTGTGCA+AGG | - | chr3_2:28652017-28652036 | None:intergenic | 30.0% | |
| AGTTGCTACTGAAAAAATCA+TGG | - | chr3_2:28652175-28652194 | None:intergenic | 30.0% | |
| !!! | GATTTTTTCAGTAGCAACTT+AGG | + | chr3_2:28652176-28652195 | Msa0401790:intron | 30.0% |
| TCACAAATAGATCTGATTGT+AGG | - | chr3_2:28652235-28652254 | None:intergenic | 30.0% | |
| TCTTAGATCTAAAGGCTTAA+AGG | + | chr3_2:28652275-28652294 | Msa0401790:intron | 30.0% | |
| !! | TGATCAACAAAAAGTACCTC+AGG | - | chr3_2:28651645-28651664 | None:intergenic | 35.0% |
| CGGTAGCAAAAATTCAAGTA+CGG | + | chr3_2:28651949-28651968 | Msa0401790:intron | 35.0% | |
| AAAACCTGAAACAGGAATGT+TGG | - | chr3_2:28652081-28652100 | None:intergenic | 35.0% | |
| ! | TTATCTCAATGTGTTGCTAG+AGG | + | chr3_2:28652110-28652129 | Msa0401790:intron | 35.0% |
| ATCTAAAGGCTTAAAGGCTT+TGG | + | chr3_2:28652281-28652300 | Msa0401790:intron | 35.0% | |
| !! | TGATCAACAAAAAGTACCTC+AGG | - | chr3_2:28651645-28651664 | None:intergenic | 35.0% |
| CGGTAGCAAAAATTCAAGTA+CGG | + | chr3_2:28651949-28651968 | Msa0401790:intron | 35.0% | |
| AAAACCTGAAACAGGAATGT+TGG | - | chr3_2:28652081-28652100 | None:intergenic | 35.0% | |
| ! | TTATCTCAATGTGTTGCTAG+AGG | + | chr3_2:28652110-28652129 | Msa0401790:intron | 35.0% |
| ATCTAAAGGCTTAAAGGCTT+TGG | + | chr3_2:28652281-28652300 | Msa0401790:intron | 35.0% | |
| ATGGTTCACGAACTCACAAA+GGG | + | chr3_2:28651536-28651555 | Msa0401790:CDS | 40.0% | |
| !! | GTTCTGGCTTTATGATGTTG+CGG | + | chr3_2:28651895-28651914 | Msa0401790:CDS | 40.0% |
| CTTTATGATGTTGCGGAAAG+CGG | + | chr3_2:28651902-28651921 | Msa0401790:CDS | 40.0% | |
| ATCTCCAACATTCCTGTTTC+AGG | + | chr3_2:28652074-28652093 | Msa0401790:intron | 40.0% | |
| TAGAACGCAAAACCTGAAAC+AGG | - | chr3_2:28652089-28652108 | None:intergenic | 40.0% | |
| ATGGTTCACGAACTCACAAA+GGG | + | chr3_2:28651536-28651555 | Msa0401790:CDS | 40.0% | |
| !! | GTTCTGGCTTTATGATGTTG+CGG | + | chr3_2:28651895-28651914 | Msa0401790:CDS | 40.0% |
| CTTTATGATGTTGCGGAAAG+CGG | + | chr3_2:28651902-28651921 | Msa0401790:CDS | 40.0% | |
| ATCTCCAACATTCCTGTTTC+AGG | + | chr3_2:28652074-28652093 | Msa0401790:intron | 40.0% | |
| TAGAACGCAAAACCTGAAAC+AGG | - | chr3_2:28652089-28652108 | None:intergenic | 40.0% | |
| TGTATCAACCTCTAGCTGAC+AGG | + | chr3_2:28652035-28652054 | Msa0401790:intron | 45.0% | |
| AACACAAACCTGTCAGCTAG+AGG | - | chr3_2:28652046-28652065 | None:intergenic | 45.0% | |
| TGCTAGAGGCTATTGATCCT+AGG | + | chr3_2:28652124-28652143 | Msa0401790:intron | 45.0% | |
| TGTTGAGTTTGCAACTGCAG+AGG | + | chr3_2:28652307-28652326 | Msa0401790:CDS | 45.0% | |
| TGTATCAACCTCTAGCTGAC+AGG | + | chr3_2:28652035-28652054 | Msa0401790:intron | 45.0% | |
| AACACAAACCTGTCAGCTAG+AGG | - | chr3_2:28652046-28652065 | None:intergenic | 45.0% | |
| TGCTAGAGGCTATTGATCCT+AGG | + | chr3_2:28652124-28652143 | Msa0401790:intron | 45.0% | |
| TGTTGAGTTTGCAACTGCAG+AGG | + | chr3_2:28652307-28652326 | Msa0401790:CDS | 45.0% | |
| GGCATTCCTAAGTGAACGCA+CGG | + | chr3_2:28651929-28651948 | Msa0401790:CDS | 50.0% | |
| TTGCTACCGTGCGTTCACTT+AGG | - | chr3_2:28651938-28651957 | None:intergenic | 50.0% | |
| GGCATTCCTAAGTGAACGCA+CGG | + | chr3_2:28651929-28651948 | Msa0401790:CDS | 50.0% | |
| TTGCTACCGTGCGTTCACTT+AGG | - | chr3_2:28651938-28651957 | None:intergenic | 50.0% | |
| GATGTTGCGGAAAGCGGTGA+AGG | + | chr3_2:28651908-28651927 | Msa0401790:CDS | 55.0% | |
| GATGTTGCGGAAAGCGGTGA+AGG | + | chr3_2:28651908-28651927 | Msa0401790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 28651536 | 28652344 | 28651536 | ID=Msa0401790;Name=Msa0401790 |
| chr3_2 | mRNA | 28651536 | 28652344 | 28651536 | ID=Msa0401790-mRNA-1;Parent=Msa0401790;Name=Msa0401790-mRNA-1;_AED=0.59;_eAED=0.77;_QI=0|0|0|1|0|0.5|4|0|80 |
| chr3_2 | exon | 28651536 | 28651613 | 28651536 | ID=Msa0401790-mRNA-1:exon:5834;Parent=Msa0401790-mRNA-1 |
| chr3_2 | exon | 28651864 | 28651965 | 28651864 | ID=Msa0401790-mRNA-1:exon:5835;Parent=Msa0401790-mRNA-1 |
| chr3_2 | exon | 28652050 | 28652056 | 28652050 | ID=Msa0401790-mRNA-1:exon:5836;Parent=Msa0401790-mRNA-1 |
| chr3_2 | exon | 28652289 | 28652344 | 28652289 | ID=Msa0401790-mRNA-1:exon:5837;Parent=Msa0401790-mRNA-1 |
| chr3_2 | CDS | 28651536 | 28651613 | 28651536 | ID=Msa0401790-mRNA-1:cds;Parent=Msa0401790-mRNA-1 |
| chr3_2 | CDS | 28651864 | 28651965 | 28651864 | ID=Msa0401790-mRNA-1:cds;Parent=Msa0401790-mRNA-1 |
| chr3_2 | CDS | 28652050 | 28652056 | 28652050 | ID=Msa0401790-mRNA-1:cds;Parent=Msa0401790-mRNA-1 |
| chr3_2 | CDS | 28652289 | 28652344 | 28652289 | ID=Msa0401790-mRNA-1:cds;Parent=Msa0401790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
