Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529070 | XP_024630318.1 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 4.52e-173 | 489 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529070 | A0A396I5P8 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 2.16e-173 | 489 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004180 | Msa0529070 | 0.816854 | 4.461151e-52 | -8.615850e-47 |
Msa0042210 | Msa0529070 | 0.832214 | 1.074018e-55 | -8.615850e-47 |
Msa0075080 | Msa0529070 | 0.817616 | 3.006200e-52 | -8.615850e-47 |
Msa0076590 | Msa0529070 | 0.802304 | 5.977771e-49 | -8.615850e-47 |
Msa0102290 | Msa0529070 | 0.801161 | 1.025948e-48 | -8.615850e-47 |
Msa0122930 | Msa0529070 | 0.809132 | 2.200538e-50 | -8.615850e-47 |
Msa0127510 | Msa0529070 | 0.801515 | 8.682092e-49 | -8.615850e-47 |
Msa0162170 | Msa0529070 | 0.822945 | 1.805550e-53 | -8.615850e-47 |
Msa0167570 | Msa0529070 | 0.821565 | 3.772895e-53 | -8.615850e-47 |
Msa0168470 | Msa0529070 | 0.806611 | 7.563014e-50 | -8.615850e-47 |
Msa0185540 | Msa0529070 | 0.804104 | 2.535212e-49 | -8.615850e-47 |
Msa0191180 | Msa0529070 | 0.820710 | 5.941141e-53 | -8.615850e-47 |
Msa0224180 | Msa0529070 | 0.831423 | 1.683675e-55 | -8.615850e-47 |
Msa0238460 | Msa0529070 | 0.806276 | 8.898709e-50 | -8.615850e-47 |
Msa0380470 | Msa0529070 | 0.804094 | 2.547166e-49 | -8.615850e-47 |
Msa0386230 | Msa0529070 | 0.809956 | 1.463926e-50 | -8.615850e-47 |
Msa0390760 | Msa0529070 | 0.831469 | 1.639774e-55 | -8.615850e-47 |
Msa0431550 | Msa0529070 | 0.800534 | 1.377677e-48 | -8.615850e-47 |
Msa0446110 | Msa0529070 | 0.801556 | 8.516620e-49 | -8.615850e-47 |
Msa0476140 | Msa0529070 | 0.810653 | 1.035795e-50 | -8.615850e-47 |
Msa0322480 | Msa0529070 | 0.803265 | 3.786419e-49 | -8.615850e-47 |
Msa0500580 | Msa0529070 | 0.802095 | 6.600018e-49 | -8.615850e-47 |
Msa0506700 | Msa0529070 | 0.810962 | 8.877672e-51 | -8.615850e-47 |
Msa0512930 | Msa0529070 | 0.811124 | 8.191447e-51 | -8.615850e-47 |
Msa0514630 | Msa0529070 | 0.833381 | 5.509474e-56 | -8.615850e-47 |
Msa0529060 | Msa0529070 | 0.988514 | 2.561964e-174 | -8.615850e-47 |
Msa0529070 | Msa0543010 | 0.820578 | 6.369301e-53 | -8.615850e-47 |
Msa0529070 | Msa0597800 | -0.810126 | 1.346024e-50 | -8.615850e-47 |
Msa0529070 | Msa0608720 | 0.801613 | 8.290729e-49 | -8.615850e-47 |
Msa0529070 | Msa0619450 | 0.813136 | 2.981454e-51 | -8.615850e-47 |
Msa0529070 | Msa0619530 | 0.803179 | 3.943983e-49 | -8.615850e-47 |
Msa0529070 | Msa0619960 | 0.819897 | 9.123182e-53 | -8.615850e-47 |
Msa0529070 | Msa0620050 | 0.819638 | 1.045834e-52 | -8.615850e-47 |
Msa0529070 | Msa0624260 | 0.806393 | 8.407866e-50 | -8.615850e-47 |
Msa0529070 | Msa0624360 | 0.803632 | 3.177633e-49 | -8.615850e-47 |
Msa0529070 | Msa0659580 | 0.812679 | 3.755184e-51 | -8.615850e-47 |
Msa0529070 | Msa0673620 | 0.817936 | 2.545687e-52 | -8.615850e-47 |
Msa0529070 | Msa0681100 | 0.809992 | 1.438219e-50 | -8.615850e-47 |
Msa0529070 | Msa0699200 | 0.834279 | 3.285731e-56 | -8.615850e-47 |
Msa0529070 | Msa0708360 | 0.822792 | 1.959386e-53 | -8.615850e-47 |
Msa0529070 | Msa0711860 | 0.813969 | 1.955488e-51 | -8.615850e-47 |
Msa0529070 | Msa0753590 | 0.807051 | 6.104216e-50 | -8.615850e-47 |
Msa0529070 | Msa0784780 | 0.819733 | 9.948478e-53 | -8.615850e-47 |
Msa0529070 | Msa0799150 | 0.828581 | 8.303207e-55 | -8.615850e-47 |
Msa0529070 | Msa0858250 | 0.811340 | 7.354081e-51 | -8.615850e-47 |
Msa0529070 | Msa0967540 | 0.807047 | 6.117346e-50 | -8.615850e-47 |
Msa0529070 | Msa0978540 | 0.806191 | 9.271370e-50 | -8.615850e-47 |
Msa0529070 | Msa0995130 | 0.800082 | 1.702659e-48 | -8.615850e-47 |
Msa0529070 | Msa1047390 | 0.801850 | 7.410874e-49 | -8.615850e-47 |
Msa0529070 | Msa1058550 | 0.814936 | 1.194917e-51 | -8.615850e-47 |
Msa0529070 | Msa1095880 | 0.804408 | 2.191423e-49 | -8.615850e-47 |
Msa0529070 | Msa1128850 | 0.809950 | 1.468824e-50 | -8.615850e-47 |
Msa0529070 | Msa1131300 | 0.817795 | 2.740371e-52 | -8.615850e-47 |
Msa0529070 | Msa1156100 | 0.810621 | 1.052196e-50 | -8.615850e-47 |
Msa0529070 | Msa1190300 | 0.803915 | 2.775639e-49 | -8.615850e-47 |
Msa0529070 | Msa1191270 | -0.808244 | 3.407045e-50 | -8.615850e-47 |
Msa0529070 | Msa1203320 | 0.813216 | 2.863328e-51 | -8.615850e-47 |
Msa0529070 | Msa1222900 | 0.809798 | 1.583455e-50 | -8.615850e-47 |
Msa0529070 | Msa1278120 | 0.816582 | 5.134395e-52 | -8.615850e-47 |
Msa0529070 | Msa1287100 | 0.803054 | 4.186620e-49 | -8.615850e-47 |
Msa0529070 | Msa1325260 | 0.818877 | 1.558329e-52 | -8.615850e-47 |
Msa0529070 | Msa1330080 | 0.804242 | 2.373338e-49 | -8.615850e-47 |
Msa0529070 | Msa1375650 | 0.806602 | 7.595501e-50 | -8.615850e-47 |
Msa0529070 | Msa1462700 | 0.813256 | 2.806459e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529070 | MtrunA17_Chr4g0021461 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 4.16e-177 | 489 |
Msa0529070 | MtrunA17_Chr8g0361751 | 39.796 | 98 | 59 | 0 | 154 | 251 | 219 | 316 | 2.57e-17 | 80.1 |
Msa0529070 | MtrunA17_Chr1g0202351 | 34.021 | 97 | 64 | 0 | 155 | 251 | 210 | 306 | 4.44e-13 | 67.8 |
Msa0529070 | MtrunA17_Chr8g0387651 | 29.932 | 147 | 91 | 2 | 117 | 251 | 190 | 336 | 1.06e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529070 | AT2G20725.1 | 50.820 | 183 | 89 | 1 | 76 | 257 | 119 | 301 | 5.51e-59 | 189 |
Msa0529070 | AT1G14270.4 | 42.000 | 100 | 58 | 0 | 160 | 259 | 113 | 212 | 6.02e-19 | 83.2 |
Msa0529070 | AT1G14270.3 | 42.000 | 100 | 58 | 0 | 160 | 259 | 113 | 212 | 6.02e-19 | 83.2 |
Msa0529070 | AT1G14270.2 | 42.000 | 100 | 58 | 0 | 160 | 259 | 133 | 232 | 9.48e-19 | 83.2 |
Msa0529070 | AT1G14270.1 | 34.228 | 149 | 94 | 1 | 115 | 259 | 190 | 338 | 3.86e-18 | 83.2 |
Msa0529070 | AT5G60750.1 | 32.990 | 97 | 65 | 0 | 155 | 251 | 243 | 339 | 4.54e-12 | 65.5 |
Find 52 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACAGATTACTTGGCTTTA+AGG | 0.139149 | 4_1:+2247795 | Msa0529070:CDS |
CTGCATTGTCACTCCTCTTT+TGG | 0.166860 | 4_1:+2251319 | Msa0529070:CDS |
ATTTGGGTTTATTGCTCTTC+TGG | 0.227639 | 4_1:+2247750 | Msa0529070:CDS |
TTGTCATCAGCTCTGGGATT+TGG | 0.232068 | 4_1:+2247733 | Msa0529070:CDS |
TGTCATCAGCTCTGGGATTT+GGG | 0.270923 | 4_1:+2247734 | Msa0529070:CDS |
TTCCCGTAACACTGAGTAAA+AGG | 0.285731 | 4_1:-2246354 | None:intergenic |
TCCTTGGATGCTCCTATTGC+TGG | 0.317162 | 4_1:+2251486 | Msa0529070:CDS |
CTACTTGCTGACAGATTACT+TGG | 0.328616 | 4_1:+2247787 | Msa0529070:CDS |
AATTTCCCACTCAACTTGAT+AGG | 0.351762 | 4_1:+2246234 | Msa0529070:CDS |
TTTGTACAACTGTTCATCAT+TGG | 0.365425 | 4_1:+2251458 | Msa0529070:CDS |
TACAGCTTGTTGCCACTTCA+TGG | 0.373289 | 4_1:-2251387 | None:intergenic |
TTCAGTGCAATTCACTTCTC+TGG | 0.383677 | 4_1:+2251428 | Msa0529070:CDS |
CAAATTTCCAGTCCAGCAAT+AGG | 0.384377 | 4_1:-2251498 | None:intergenic |
ATATATGTCATGTCAGTAAC+GGG | 0.385237 | 4_1:+2246188 | None:intergenic |
TTCATCATTGGGTGTGTCCT+TGG | 0.388968 | 4_1:+2251470 | Msa0529070:CDS |
AATTATTGAGTGACAGGAAC+TGG | 0.398989 | 4_1:+2247707 | Msa0529070:CDS |
CTCTTGAGATATCACTGTTT+AGG | 0.403202 | 4_1:-2251277 | None:intergenic |
TTGGAAGAAGTTGTTTATAG+AGG | 0.413244 | 4_1:+2251338 | Msa0529070:CDS |
TTGAATGGTAAGAAGAGATA+TGG | 0.430408 | 4_1:-2247599 | None:intergenic |
TTGTACAACTGTTCATCATT+GGG | 0.432716 | 4_1:+2251459 | Msa0529070:CDS |
TTACTCAGTGTTACGGGAAG+AGG | 0.442324 | 4_1:+2246358 | Msa0529070:CDS |
TCTTGAGTTTAATGCGGCTC+TGG | 0.446196 | 4_1:+2247624 | Msa0529070:CDS |
CCAAGAGGTGCCATTGCAAA+AGG | 0.465524 | 4_1:+2246315 | Msa0529070:CDS |
GAAAAGATAAAGAACAAGAT+TGG | 0.486664 | 4_1:-2246411 | None:intergenic |
GGATGCTCCTATTGCTGGAC+TGG | 0.488522 | 4_1:+2251491 | Msa0529070:CDS |
ATTAAACTCAAGAACTTGAA+TGG | 0.494812 | 4_1:-2247614 | None:intergenic |
CATGGCAGAGTGGTGATGTA+TGG | 0.496794 | 4_1:+2246387 | Msa0529070:CDS |
TAAACAACTTCTTCCAAAAG+AGG | 0.497470 | 4_1:-2251332 | None:intergenic |
AGGAGGATCTCCTTCAATGT+TGG | 0.499718 | 4_1:-2251257 | None:intergenic |
ATAACAAATTATTGAGTGAC+AGG | 0.502222 | 4_1:+2247701 | Msa0529070:CDS |
TCCCACTCAACTTGATAGGT+TGG | 0.507603 | 4_1:+2246238 | Msa0529070:CDS |
TTGAGATATCACTGTTTAGG+AGG | 0.536495 | 4_1:-2251274 | None:intergenic |
TATATATGTCATGTCAGTAA+CGG | 0.555577 | 4_1:+2246187 | None:intergenic |
TTGTTGCCACTTCATGGTGG+AGG | 0.558411 | 4_1:-2251381 | None:intergenic |
CAAATAGAAACTCGAAATTG+AGG | 0.559048 | 4_1:+2246291 | Msa0529070:CDS |
TCCAGCAATAGGAGCATCCA+AGG | 0.564400 | 4_1:-2251487 | None:intergenic |
TGTTAGCAATCCAACATTGA+AGG | 0.566242 | 4_1:+2251247 | Msa0529070:CDS |
CACTTTCCTCCACCATGAAG+TGG | 0.568923 | 4_1:+2251375 | Msa0529070:CDS |
AAACTTGAAAATTTATACTG+TGG | 0.587683 | 4_1:-2247670 | None:intergenic |
TTTATACTGTGGTTTAGCCG+TGG | 0.593031 | 4_1:-2247659 | None:intergenic |
TACCAACCTATCAAGTTGAG+TGG | 0.599341 | 4_1:-2246240 | None:intergenic |
CATACATCACCACTCTGCCA+TGG | 0.603331 | 4_1:-2246386 | None:intergenic |
ACCAACCTATCAAGTTGAGT+GGG | 0.612583 | 4_1:-2246239 | None:intergenic |
AGCTTGTTGCCACTTCATGG+TGG | 0.613499 | 4_1:-2251384 | None:intergenic |
GTACAAAGAATGAATAACAA+TGG | 0.630175 | 4_1:-2251528 | None:intergenic |
TCAAGTTCTTGAGTTTAATG+CGG | 0.637510 | 4_1:+2247618 | Msa0529070:CDS |
TCTGGTTGTATTGAAGTCCA+CGG | 0.651123 | 4_1:+2247642 | Msa0529070:CDS |
TACGGGAAGAGGATAGTCCA+TGG | 0.659102 | 4_1:+2246369 | Msa0529070:CDS |
ACTCGAAATTGAGGTCCAAG+AGG | 0.683963 | 4_1:+2246300 | Msa0529070:CDS |
GAGGATAGTCCATGGCAGAG+TGG | 0.688866 | 4_1:+2246377 | Msa0529070:CDS |
ATGTCATGTCAGTAACGGGG+TGG | 0.692719 | 4_1:+2246192 | None:intergenic |
TATATGTCATGTCAGTAACG+GGG | 0.747589 | 4_1:+2246189 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATTACTAACAAAATA+AGG | - | chr4_1:2246547-2246566 | None:intergenic | 10.0% |
!!! | TATTTTGTTAGTAATTTTAT+TGG | + | chr4_1:2246547-2246566 | Msa0529070:intron | 10.0% |
!!! | ATTTTGTTAGTAATTTTATT+GGG | + | chr4_1:2246548-2246567 | Msa0529070:intron | 10.0% |
!!! | TAAAAAAAAATATTTTACAG+GGG | - | chr4_1:2246618-2246637 | None:intergenic | 10.0% |
!!! | TGAAAAAATTAATATTTTAC+AGG | - | chr4_1:2246647-2246666 | None:intergenic | 10.0% |
!!! | AAATCAAAAAAATATTTTAC+AGG | + | chr4_1:2246782-2246801 | Msa0529070:intron | 10.0% |
!!! | AATCAAAAAAATATTTTACA+GGG | + | chr4_1:2246783-2246802 | Msa0529070:intron | 10.0% |
!! | AGAATTAAAAAAATAAATGA+AGG | + | chr4_1:2250035-2250054 | Msa0529070:intron | 10.0% |
!! | GAATTAAAAAAATAAATGAA+GGG | + | chr4_1:2250036-2250055 | Msa0529070:intron | 10.0% |
!!! | TGGAAAAAAAAAACTTTTAT+AGG | + | chr4_1:2246754-2246773 | Msa0529070:intron | 15.0% |
!!! | GGAAAAAAAAAACTTTTATA+GGG | + | chr4_1:2246755-2246774 | Msa0529070:intron | 15.0% |
!!! | ATCAAAAAAATATTTTACAG+GGG | + | chr4_1:2246784-2246803 | Msa0529070:intron | 15.0% |
!! | TATTTAAATTACAAACAGTT+TGG | - | chr4_1:2246938-2246957 | None:intergenic | 15.0% |
!! | TTAAATAAATCTATACGAAA+AGG | - | chr4_1:2247224-2247243 | None:intergenic | 15.0% |
!!! | TAACAAATTTTAGTTGTAAT+TGG | + | chr4_1:2247256-2247275 | Msa0529070:intron | 15.0% |
!! | TATGTTAAATAATCTTCTAA+AGG | - | chr4_1:2247315-2247334 | None:intergenic | 15.0% |
!! | TTAGAAGATTATTTAACATA+AGG | + | chr4_1:2247315-2247334 | Msa0529070:intron | 15.0% |
!! | AAATTTCTATAAGTGATAAT+CGG | - | chr4_1:2247904-2247923 | None:intergenic | 15.0% |
!!! | TAAAGTTAACATTTGTTAAA+GGG | - | chr4_1:2248154-2248173 | None:intergenic | 15.0% |
!! | TTTAACAAATGTTAACTTTA+GGG | + | chr4_1:2248154-2248173 | Msa0529070:intron | 15.0% |
!!! | AGGAATTTTTTTGTTTTATT+AGG | - | chr4_1:2251045-2251064 | None:intergenic | 15.0% |
!! | ATAAAAATAAGTCATGAATA+AGG | - | chr4_1:2251564-2251583 | None:intergenic | 15.0% |
!!! | AGTTTCTATTTGTGTTTTTT+TGG | - | chr4_1:2246283-2246302 | None:intergenic | 20.0% |
!! | AAAATAAGGATAAAGGATAA+AGG | - | chr4_1:2246533-2246552 | None:intergenic | 20.0% |
!! | TACTAACAAAATAAGGATAA+AGG | - | chr4_1:2246540-2246559 | None:intergenic | 20.0% |
!!! | AAAAAAAAACTTTTATAGGG+TGG | + | chr4_1:2246758-2246777 | Msa0529070:intron | 20.0% |
!! | TTCGTATAGATTTATTTAAG+TGG | + | chr4_1:2247225-2247244 | Msa0529070:intron | 20.0% |
!! | AAGATTATTTAACATAAGGT+TGG | + | chr4_1:2247319-2247338 | Msa0529070:intron | 20.0% |
!!! | GAATTGGAATTTTCATTTTA+AGG | + | chr4_1:2247430-2247449 | Msa0529070:intron | 20.0% |
!!! | TTTTATACAACAAGTTTCTA+AGG | + | chr4_1:2247492-2247511 | Msa0529070:intron | 20.0% |
!!! | TGTTAAGATATTTTAACACA+TGG | + | chr4_1:2247552-2247571 | Msa0529070:intron | 20.0% |
!! | AAACTTGAAAATTTATACTG+TGG | - | chr4_1:2247673-2247692 | None:intergenic | 20.0% |
!! | TCACTATATTTACATCTATT+TGG | - | chr4_1:2247962-2247981 | None:intergenic | 20.0% |
!! | AAATAGATGTAAATATAGTG+AGG | + | chr4_1:2247961-2247980 | Msa0529070:intron | 20.0% |
!!! | GAATTTTTATTTTGGTCTAA+AGG | - | chr4_1:2247999-2248018 | None:intergenic | 20.0% |
!!! | CTACACAAGAATTTTTATTT+TGG | - | chr4_1:2248007-2248026 | None:intergenic | 20.0% |
!!! | CTAAAGTTAACATTTGTTAA+AGG | - | chr4_1:2248155-2248174 | None:intergenic | 20.0% |
!! | CTTTAACAAATGTTAACTTT+AGG | + | chr4_1:2248153-2248172 | Msa0529070:intron | 20.0% |
!! | ATGATCACTAAACTATTATT+AGG | + | chr4_1:2250563-2250582 | Msa0529070:intron | 20.0% |
!! | CTTGTTTCATTAAGAAAATA+AGG | - | chr4_1:2250627-2250646 | None:intergenic | 20.0% |
!! | AAAAAAAACACAAAATTCGA+TGG | - | chr4_1:2251185-2251204 | None:intergenic | 20.0% |
!! | ATGGTAAAAGTTACATTAAA+GGG | - | chr4_1:2251210-2251229 | None:intergenic | 20.0% |
!! | TATGGTAAAAGTTACATTAA+AGG | - | chr4_1:2251211-2251230 | None:intergenic | 20.0% |
! | GAAAAGATAAAGAACAAGAT+TGG | - | chr4_1:2246414-2246433 | None:intergenic | 25.0% |
!! | TTTTGTATGATCTATTAGGT+GGG | - | chr4_1:2246675-2246694 | None:intergenic | 25.0% |
!! | TTTTTGTATGATCTATTAGG+TGG | - | chr4_1:2246676-2246695 | None:intergenic | 25.0% |
! | ACCTAATAGATCATACAAAA+AGG | + | chr4_1:2246675-2246694 | Msa0529070:intron | 25.0% |
!! | TCCTTTTTGTATGATCTATT+AGG | - | chr4_1:2246679-2246698 | None:intergenic | 25.0% |
! | ATGGAAATAACCTATATTAC+AGG | + | chr4_1:2246813-2246832 | Msa0529070:intron | 25.0% |
! | TGGAAATAACCTATATTACA+GGG | + | chr4_1:2246814-2246833 | Msa0529070:intron | 25.0% |
! | GTGTATAAAATTAGGGTTAA+CGG | - | chr4_1:2246848-2246867 | None:intergenic | 25.0% |
!!! | CAGTTTGGTGTATAAAATTA+GGG | - | chr4_1:2246855-2246874 | None:intergenic | 25.0% |
!!! | TCAGTTTGGTGTATAAAATT+AGG | - | chr4_1:2246856-2246875 | None:intergenic | 25.0% |
! | AATTACAAACAGTTTGGATT+TGG | - | chr4_1:2246932-2246951 | None:intergenic | 25.0% |
! | TAATTTAAATACGTTCGACA+AGG | + | chr4_1:2246947-2246966 | Msa0529070:intron | 25.0% |
! | GAAAATAGTTCTTCTAAATC+TGG | + | chr4_1:2247072-2247091 | Msa0529070:intron | 25.0% |
! | GTATCCTTATGGAATTAATA+CGG | + | chr4_1:2247282-2247301 | Msa0529070:intron | 25.0% |
! | TCTTATGTTGCAAATATAAC+AGG | + | chr4_1:2247371-2247390 | Msa0529070:intron | 25.0% |
!!! | CTTTCATTTTCTGAAATGAA+AGG | + | chr4_1:2247466-2247485 | Msa0529070:intron | 25.0% |
! | ATTAAACTCAAGAACTTGAA+TGG | - | chr4_1:2247617-2247636 | None:intergenic | 25.0% |
! | ATAACAAATTATTGAGTGAC+AGG | + | chr4_1:2247701-2247720 | Msa0529070:CDS | 25.0% |
!! | CTTATAGAAATTTTGCTACT+AGG | + | chr4_1:2247911-2247930 | Msa0529070:intron | 25.0% |
!! | AGAGGTTTTTGAACATAAAT+AGG | + | chr4_1:2249143-2249162 | Msa0529070:intron | 25.0% |
!!! | GTTTTCTAAGAAAAATGTCA+TGG | - | chr4_1:2249427-2249446 | None:intergenic | 25.0% |
! | ATTGCAGATTCATATAACTA+TGG | + | chr4_1:2249532-2249551 | Msa0529070:intron | 25.0% |
!!! | TTTTCAGGTTATGATTTCTA+TGG | - | chr4_1:2249755-2249774 | None:intergenic | 25.0% |
!! | TCAATGATTTGGAAAATGAA+AGG | + | chr4_1:2249895-2249914 | Msa0529070:intron | 25.0% |
!! | AGTTATTGTTGTTACAAAAG+CGG | + | chr4_1:2250010-2250029 | Msa0529070:intron | 25.0% |
! | TTAGGTATACATTATCAACT+AGG | + | chr4_1:2250097-2250116 | Msa0529070:intron | 25.0% |
! | TCTTTACAATTCAAAGTCAA+AGG | + | chr4_1:2250226-2250245 | Msa0529070:intron | 25.0% |
! | TAACAACACTAGTAATAGAT+TGG | + | chr4_1:2250397-2250416 | Msa0529070:intron | 25.0% |
!!! | ATAGATTACCTTTTGTTGTA+AGG | + | chr4_1:2250592-2250611 | Msa0529070:intron | 25.0% |
! | TGTATTAACAAAATTTCAGG+AGG | - | chr4_1:2251065-2251084 | None:intergenic | 25.0% |
! | TGGTGTATTAACAAAATTTC+AGG | - | chr4_1:2251068-2251087 | None:intergenic | 25.0% |
! | GTACAAAGAATGAATAACAA+TGG | - | chr4_1:2251531-2251550 | None:intergenic | 25.0% |
CAAATAGAAACTCGAAATTG+AGG | + | chr4_1:2246291-2246310 | Msa0529070:CDS | 30.0% | |
! | GTGTTTTATCCCTGTAATAT+AGG | + | chr4_1:2246577-2246596 | Msa0529070:intron | 30.0% |
! | TGGTTTTTGTATGACCTATT+AGG | + | chr4_1:2246724-2246743 | Msa0529070:intron | 30.0% |
! | GGTTTTTGTATGACCTATTA+GGG | + | chr4_1:2246725-2246744 | Msa0529070:intron | 30.0% |
! | GTTTTTGTATGACCTATTAG+GGG | + | chr4_1:2246726-2246745 | Msa0529070:intron | 30.0% |
! | TATTTTACAGGGGATAAACA+TGG | + | chr4_1:2246794-2246813 | Msa0529070:intron | 30.0% |
GGAAATAACCTATATTACAG+GGG | + | chr4_1:2246815-2246834 | Msa0529070:intron | 30.0% | |
ATCATTTGAGTCCATGAATA+TGG | - | chr4_1:2247004-2247023 | None:intergenic | 30.0% | |
TCAAATGTTTAGTAATCGCA+AGG | - | chr4_1:2247186-2247205 | None:intergenic | 30.0% | |
!! | GTAATTGGTTTGTATCCTTA+TGG | + | chr4_1:2247271-2247290 | Msa0529070:intron | 30.0% |
ATCACCGTATTAATTCCATA+AGG | - | chr4_1:2247289-2247308 | None:intergenic | 30.0% | |
TAAATTTGTGCAGTTCTGTA+AGG | + | chr4_1:2247405-2247424 | Msa0529070:intron | 30.0% | |
!! | ATACAACAAGTTTCTAAGGT+AGG | + | chr4_1:2247496-2247515 | Msa0529070:intron | 30.0% |
AAAGTCAAAACAACGTGAAA+AGG | - | chr4_1:2247532-2247551 | None:intergenic | 30.0% | |
!! | TCTTTTTCATTCACAAATGC+AGG | + | chr4_1:2247576-2247595 | Msa0529070:intron | 30.0% |
TTGAATGGTAAGAAGAGATA+TGG | - | chr4_1:2247602-2247621 | None:intergenic | 30.0% | |
TCAAGTTCTTGAGTTTAATG+CGG | + | chr4_1:2247618-2247637 | Msa0529070:CDS | 30.0% | |
ATGATTTCTAACGATATACG+AGG | + | chr4_1:2248446-2248465 | Msa0529070:intron | 30.0% | |
TGATTTCTAACGATATACGA+GGG | + | chr4_1:2248447-2248466 | Msa0529070:intron | 30.0% | |
TCTTTGTAAGAAAGATTCCT+TGG | + | chr4_1:2248601-2248620 | Msa0529070:intron | 30.0% | |
TATACATAGTGAATTGAGAC+TGG | + | chr4_1:2248646-2248665 | Msa0529070:intron | 30.0% | |
ATACATAGTGAATTGAGACT+GGG | + | chr4_1:2248647-2248666 | Msa0529070:intron | 30.0% | |
GTTGAGAAAATGGTATTTGA+TGG | + | chr4_1:2248760-2248779 | Msa0529070:intron | 30.0% | |
!!! | AAACTGGTTTTGAATGAACA+AGG | + | chr4_1:2248872-2248891 | Msa0529070:intron | 30.0% |
!!! | AACTGGTTTTGAATGAACAA+GGG | + | chr4_1:2248873-2248892 | Msa0529070:intron | 30.0% |
TTATGTTCAAAAACCTCTCT+AGG | - | chr4_1:2249141-2249160 | None:intergenic | 30.0% | |
GAACATAAATAGGCTCAAAT+TGG | + | chr4_1:2249153-2249172 | Msa0529070:intron | 30.0% | |
TAAACACCAGATACCATATT+GGG | + | chr4_1:2249847-2249866 | Msa0529070:intron | 30.0% | |
GTGACAACTCTTAACAAAAT+AGG | + | chr4_1:2249957-2249976 | Msa0529070:intron | 30.0% | |
CTCTTAACAAAATAGGAAAG+AGG | + | chr4_1:2249964-2249983 | Msa0529070:intron | 30.0% | |
TGTATTAGAGTAGTTATACC+TGG | - | chr4_1:2250066-2250085 | None:intergenic | 30.0% | |
GTATAACTACTCTAATACAC+TGG | + | chr4_1:2250067-2250086 | Msa0529070:intron | 30.0% | |
TGCTGTGATAAAGAATGATA+TGG | + | chr4_1:2250170-2250189 | Msa0529070:intron | 30.0% | |
TAGTCAAAGTAGAAGAAAGA+TGG | + | chr4_1:2250199-2250218 | Msa0529070:intron | 30.0% | |
AATGATTCAGAACTTTGACA+AGG | - | chr4_1:2250265-2250284 | None:intergenic | 30.0% | |
!! | TCAAAGTTCTGAATCATTCA+TGG | + | chr4_1:2250267-2250286 | Msa0529070:intron | 30.0% |
!! | CAAAGTTCTGAATCATTCAT+GGG | + | chr4_1:2250268-2250287 | Msa0529070:intron | 30.0% |
! | TAGTGTTGTTAAATGTGCTT+TGG | - | chr4_1:2250388-2250407 | None:intergenic | 30.0% |
! | ATTATTTAGGGAGTATGTGA+AGG | - | chr4_1:2250970-2250989 | None:intergenic | 30.0% |
TAAACAACTTCTTCCAAAAG+AGG | - | chr4_1:2251335-2251354 | None:intergenic | 30.0% | |
TTGGAAGAAGTTGTTTATAG+AGG | + | chr4_1:2251338-2251357 | Msa0529070:CDS | 30.0% | |
TTTGTACAACTGTTCATCAT+TGG | + | chr4_1:2251458-2251477 | Msa0529070:CDS | 30.0% | |
TTGTACAACTGTTCATCATT+GGG | + | chr4_1:2251459-2251478 | Msa0529070:CDS | 30.0% | |
AATTTCCCACTCAACTTGAT+AGG | + | chr4_1:2246234-2246253 | Msa0529070:CDS | 35.0% | |
! | CTTGTTCTTTCCTTTTGCAA+TGG | - | chr4_1:2246328-2246347 | None:intergenic | 35.0% |
! | CTTCCTTTTACTCAGTGTTA+CGG | + | chr4_1:2246351-2246370 | Msa0529070:CDS | 35.0% |
! | TTCCTTTTACTCAGTGTTAC+GGG | + | chr4_1:2246352-2246371 | Msa0529070:CDS | 35.0% |
CGGAAATGACCTATATTACA+GGG | - | chr4_1:2246589-2246608 | None:intergenic | 35.0% | |
CCTGTAATATAGGTCATTTC+CGG | + | chr4_1:2246587-2246606 | Msa0529070:intron | 35.0% | |
CTGTAATATAGGTCATTTCC+GGG | + | chr4_1:2246588-2246607 | Msa0529070:intron | 35.0% | |
! | ATATTTTACAGGGGTAAACC+CGG | - | chr4_1:2246609-2246628 | None:intergenic | 35.0% |
! | GTGTTTTACCCCTGTAATAT+AGG | - | chr4_1:2246826-2246845 | None:intergenic | 35.0% |
! | GTCTCTTTTGCTAATCAGTT+TGG | - | chr4_1:2246870-2246889 | None:intergenic | 35.0% |
AACAAACAGCATGAGAGAAA+TGG | + | chr4_1:2246895-2246914 | Msa0529070:intron | 35.0% | |
TTTGAGTCCATGAATATGGA+AGG | - | chr4_1:2247000-2247019 | None:intergenic | 35.0% | |
ACACCTTAAGTGGGAATAAA+TGG | + | chr4_1:2247120-2247139 | Msa0529070:intron | 35.0% | |
CACCTTAAGTGGGAATAAAT+GGG | + | chr4_1:2247121-2247140 | Msa0529070:intron | 35.0% | |
TTCCCATTTATTCCCACTTA+AGG | - | chr4_1:2247126-2247145 | None:intergenic | 35.0% | |
GGGAATAAATGGGAAATATG+AGG | + | chr4_1:2247131-2247150 | Msa0529070:intron | 35.0% | |
ATGTTGCAAATATAACAGGC+TGG | + | chr4_1:2247375-2247394 | Msa0529070:intron | 35.0% | |
AATTATTGAGTGACAGGAAC+TGG | + | chr4_1:2247707-2247726 | Msa0529070:CDS | 35.0% | |
! | ATTTGGGTTTATTGCTCTTC+TGG | + | chr4_1:2247750-2247769 | Msa0529070:CDS | 35.0% |
!! | TGACAGATTACTTGGCTTTA+AGG | + | chr4_1:2247795-2247814 | Msa0529070:CDS | 35.0% |
!!! | CTACTAGGTGTTTTAGAAGT+GGG | + | chr4_1:2247926-2247945 | Msa0529070:intron | 35.0% |
CTATAATTGCCGAACTTTCT+TGG | + | chr4_1:2248103-2248122 | Msa0529070:intron | 35.0% | |
ACCATTCTACCAAGAAAGTT+CGG | - | chr4_1:2248115-2248134 | None:intergenic | 35.0% | |
AGAATGGTACATCAGTTCAT+AGG | + | chr4_1:2248127-2248146 | Msa0529070:intron | 35.0% | |
!! | TGTTAACTTTAGGGTGTGTT+TGG | + | chr4_1:2248163-2248182 | Msa0529070:intron | 35.0% |
TGTGTTTGGATTGAGGATTT+AGG | + | chr4_1:2248177-2248196 | Msa0529070:intron | 35.0% | |
TTTGGATTGAGGATTTAGGA+GGG | + | chr4_1:2248181-2248200 | Msa0529070:intron | 35.0% | |
! | TAAATCCTTAAGGGTGTGTT+TGG | - | chr4_1:2248399-2248418 | None:intergenic | 35.0% |
AACACACCCTTAAGGATTTA+TGG | + | chr4_1:2248399-2248418 | Msa0529070:intron | 35.0% | |
CACACTCCATAAATCCTTAA+GGG | - | chr4_1:2248408-2248427 | None:intergenic | 35.0% | |
CTTAAGGATTTATGGAGTGT+GGG | + | chr4_1:2248407-2248426 | Msa0529070:intron | 35.0% | |
!! | CAAAAGGTTTAAGTTGGATG+TGG | + | chr4_1:2248473-2248492 | Msa0529070:intron | 35.0% |
GTATAAGTGAGAAAACTGTG+AGG | + | chr4_1:2248495-2248514 | Msa0529070:intron | 35.0% | |
ACAAAGCTCTTAGTTGTGAT+AGG | + | chr4_1:2248544-2248563 | Msa0529070:intron | 35.0% | |
TGTAAGAAAGATTCCTTGGT+TGG | + | chr4_1:2248605-2248624 | Msa0529070:intron | 35.0% | |
AATTGCATGTAAACCAACCA+AGG | - | chr4_1:2248621-2248640 | None:intergenic | 35.0% | |
TTGAAGAAGAATGTTCAGAC+TGG | + | chr4_1:2248721-2248740 | Msa0529070:intron | 35.0% | |
GTGTATGACAGTTGAGAAAA+TGG | + | chr4_1:2248750-2248769 | Msa0529070:intron | 35.0% | |
TTCTTTACCTTTCCAAGTCA+AGG | + | chr4_1:2248786-2248805 | Msa0529070:intron | 35.0% | |
TCTTTACCTTTCCAAGTCAA+GGG | + | chr4_1:2248787-2248806 | Msa0529070:intron | 35.0% | |
TCGATTTACGTGTGTATGTT+TGG | + | chr4_1:2248835-2248854 | Msa0529070:intron | 35.0% | |
!!! | ACTGGTTTTGAATGAACAAG+GGG | + | chr4_1:2248874-2248893 | Msa0529070:intron | 35.0% |
ATAACTGAAGCAAACTGTTG+TGG | + | chr4_1:2249013-2249032 | Msa0529070:intron | 35.0% | |
ATTGAGACAGATATGAACCA+GGG | + | chr4_1:2249102-2249121 | Msa0529070:intron | 35.0% | |
CAATTCAAATGAGGTCATGA+TGG | - | chr4_1:2249263-2249282 | None:intergenic | 35.0% | |
CATCATGACCTCATTTGAAT+TGG | + | chr4_1:2249261-2249280 | Msa0529070:intron | 35.0% | |
!! | GAGTAAGAAAGATTAGCTTG+AGG | + | chr4_1:2249325-2249344 | Msa0529070:intron | 35.0% |
TTCTCTCATTAGTTGCTAGT+TGG | - | chr4_1:2249512-2249531 | None:intergenic | 35.0% | |
CATTTGAATGCGATCTTTGA+AGG | - | chr4_1:2249562-2249581 | None:intergenic | 35.0% | |
TTATGCATCTTCACTTACGT+TGG | + | chr4_1:2249696-2249715 | Msa0529070:intron | 35.0% | |
TATGCATCTTCACTTACGTT+GGG | + | chr4_1:2249697-2249716 | Msa0529070:intron | 35.0% | |
! | ATCATAACCTGAAAAGTGTG+TGG | + | chr4_1:2249760-2249779 | Msa0529070:intron | 35.0% |
TTCTACAGAAGTCATTCCTA+AGG | + | chr4_1:2249817-2249836 | Msa0529070:intron | 35.0% | |
!! | TGGTGTTTAGTTTGATCCTT+AGG | - | chr4_1:2249836-2249855 | None:intergenic | 35.0% |
CTAAACACCAGATACCATAT+TGG | + | chr4_1:2249846-2249865 | Msa0529070:intron | 35.0% | |
AGATATCCCAATATGGTATC+TGG | - | chr4_1:2249856-2249875 | None:intergenic | 35.0% | |
AGATACCATATTGGGATATC+TGG | + | chr4_1:2249855-2249874 | Msa0529070:intron | 35.0% | |
ACTGAAAGCTCTCAATGATT+TGG | + | chr4_1:2249884-2249903 | Msa0529070:intron | 35.0% | |
AAATAAATGAAGGGATTGCC+AGG | + | chr4_1:2250045-2250064 | Msa0529070:intron | 35.0% | |
TAATACACTGGCATGCAATT+AGG | + | chr4_1:2250079-2250098 | Msa0529070:intron | 35.0% | |
!!! | TGTTGGACGTTAGTTTTCTT+AGG | - | chr4_1:2250883-2250902 | None:intergenic | 35.0% |
AGCATTATAAGTTTCATCCC+TGG | + | chr4_1:2251012-2251031 | Msa0529070:intron | 35.0% | |
ATAAGTTTCATCCCTGGATA+CGG | + | chr4_1:2251018-2251037 | Msa0529070:intron | 35.0% | |
! | TTTTATTAGGACCGTATCCA+GGG | - | chr4_1:2251032-2251051 | None:intergenic | 35.0% |
TGTTAGCAATCCAACATTGA+AGG | + | chr4_1:2251247-2251266 | Msa0529070:CDS | 35.0% | |
TTGAGATATCACTGTTTAGG+AGG | - | chr4_1:2251277-2251296 | None:intergenic | 35.0% | |
CTCTTGAGATATCACTGTTT+AGG | - | chr4_1:2251280-2251299 | None:intergenic | 35.0% | |
!! | ACCAACCTATCAAGTTGAGT+GGG | - | chr4_1:2246242-2246261 | None:intergenic | 40.0% |
!! | TACCAACCTATCAAGTTGAG+TGG | - | chr4_1:2246243-2246262 | None:intergenic | 40.0% |
TTCCCGTAACACTGAGTAAA+AGG | - | chr4_1:2246357-2246376 | None:intergenic | 40.0% | |
AGAATCCACCAAAACTGAGA+GGG | - | chr4_1:2246448-2246467 | None:intergenic | 40.0% | |
CCGGAAATGACCTATATTAC+AGG | - | chr4_1:2246590-2246609 | None:intergenic | 40.0% | |
! | TTTTCCAGAACACCCCTAAT+AGG | - | chr4_1:2246741-2246760 | None:intergenic | 40.0% |
CATGAGAGAAATGGTTGAAG+AGG | + | chr4_1:2246904-2246923 | Msa0529070:intron | 40.0% | |
GTTCTTCTAAATCTGGTCAG+TGG | + | chr4_1:2247079-2247098 | Msa0529070:intron | 40.0% | |
ATAGACTCACACACCTTAAG+TGG | + | chr4_1:2247110-2247129 | Msa0529070:intron | 40.0% | |
TAGACTCACACACCTTAAGT+GGG | + | chr4_1:2247111-2247130 | Msa0529070:intron | 40.0% | |
AAGACTGCTTACAGTAGATG+TGG | - | chr4_1:2247355-2247374 | None:intergenic | 40.0% | |
GCAGTTCTGTAAGGTTGAAT+TGG | + | chr4_1:2247414-2247433 | Msa0529070:intron | 40.0% | |
TCTGGTTGTATTGAAGTCCA+CGG | + | chr4_1:2247642-2247661 | Msa0529070:CDS | 40.0% | |
TTTATACTGTGGTTTAGCCG+TGG | - | chr4_1:2247662-2247681 | None:intergenic | 40.0% | |
! | TGGTTTTTGTCATCAGCTCT+GGG | + | chr4_1:2247727-2247746 | Msa0529070:CDS | 40.0% |
! | CTACTTGCTGACAGATTACT+TGG | + | chr4_1:2247787-2247806 | Msa0529070:CDS | 40.0% |
!!! | GCTACTAGGTGTTTTAGAAG+TGG | + | chr4_1:2247925-2247944 | Msa0529070:intron | 40.0% |
AGAAGAACAGCTTATCAGTC+TGG | + | chr4_1:2248025-2248044 | Msa0529070:intron | 40.0% | |
GAAGAACAGCTTATCAGTCT+GGG | + | chr4_1:2248026-2248045 | Msa0529070:intron | 40.0% | |
!! | CAAAGAAGTATTTACCCCCA+TGG | - | chr4_1:2248059-2248078 | None:intergenic | 40.0% |
GGGGGTAAATACTTCTTTGA+TGG | + | chr4_1:2248060-2248079 | Msa0529070:intron | 40.0% | |
GTTCGGCAATTATAGCAATG+AGG | - | chr4_1:2248098-2248117 | None:intergenic | 40.0% | |
! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr4_1:2248170-2248189 | Msa0529070:intron | 40.0% |
GTTTGGATTGAGGATTTAGG+AGG | + | chr4_1:2248180-2248199 | Msa0529070:intron | 40.0% | |
TTGGATTGAGGATTTAGGAG+GGG | + | chr4_1:2248182-2248201 | Msa0529070:intron | 40.0% | |
CCACACTCCATAAATCCTTA+AGG | - | chr4_1:2248409-2248428 | None:intergenic | 40.0% | |
CCTTAAGGATTTATGGAGTG+TGG | + | chr4_1:2248406-2248425 | Msa0529070:intron | 40.0% | |
GGGAGACAAAAGGTTTAAGT+TGG | + | chr4_1:2248467-2248486 | Msa0529070:intron | 40.0% | |
CTTAGTTGTGATAGGCTAAG+AGG | + | chr4_1:2248552-2248571 | Msa0529070:intron | 40.0% | |
! | AGGAGATCAGTGTAGTTTGT+AGG | + | chr4_1:2248572-2248591 | Msa0529070:intron | 40.0% |
! | GGAGATCAGTGTAGTTTGTA+GGG | + | chr4_1:2248573-2248592 | Msa0529070:intron | 40.0% |
! | ACATTTAGCTTCCCTTGACT+TGG | - | chr4_1:2248801-2248820 | None:intergenic | 40.0% |
GGATGAGCATTTGTCAAAAC+TGG | + | chr4_1:2248856-2248875 | Msa0529070:intron | 40.0% | |
ATGTGGTGACAACATAACGT+AGG | + | chr4_1:2248925-2248944 | Msa0529070:intron | 40.0% | |
TGTTACTCTACGTTTCAGTC+TGG | - | chr4_1:2249058-2249077 | None:intergenic | 40.0% | |
CTGGTTCATATCTGTCTCAA+TGG | - | chr4_1:2249103-2249122 | None:intergenic | 40.0% | |
CATTGAGACAGATATGAACC+AGG | + | chr4_1:2249101-2249120 | Msa0529070:intron | 40.0% | |
TTGAGACAGATATGAACCAG+GGG | + | chr4_1:2249103-2249122 | Msa0529070:intron | 40.0% | |
TGTCAGGTTTGTAAAGAGTC+TGG | - | chr4_1:2249203-2249222 | None:intergenic | 40.0% | |
CGCATTCAAATGCTCTTTCA+TGG | + | chr4_1:2249570-2249589 | Msa0529070:intron | 40.0% | |
GAGTTTCTTCTTTGGATCCA+AGG | - | chr4_1:2249633-2249652 | None:intergenic | 40.0% | |
GATCCAAAGAAGAAACTCAG+AGG | + | chr4_1:2249635-2249654 | Msa0529070:intron | 40.0% | |
ATGCATCTTCACTTACGTTG+GGG | + | chr4_1:2249698-2249717 | Msa0529070:intron | 40.0% | |
! | TTCTTCTTTTACCACTGCTC+TGG | - | chr4_1:2249731-2249750 | None:intergenic | 40.0% |
! | ATAACCTGAAAAGTGTGTGG+TGG | + | chr4_1:2249763-2249782 | Msa0529070:intron | 40.0% |
TCACTCCAGATATCCCAATA+TGG | - | chr4_1:2249863-2249882 | None:intergenic | 40.0% | |
AGGAAAGAGGAACTAACTGA+AGG | + | chr4_1:2249977-2249996 | Msa0529070:intron | 40.0% | |
TCAAAGTCAAAGGAAGCTCA+AGG | + | chr4_1:2250236-2250255 | Msa0529070:intron | 40.0% | |
! | ACTAGGTAGGCTTTTAAGCA+AGG | - | chr4_1:2250299-2250318 | None:intergenic | 40.0% |
AAAGAGTCGAAGCTTCTTCA+AGG | + | chr4_1:2250348-2250367 | Msa0529070:intron | 40.0% | |
AAGAGTCGAAGCTTCTTCAA+GGG | + | chr4_1:2250349-2250368 | Msa0529070:intron | 40.0% | |
ATGTGCTTTGGTAAAGCCTA+GGG | - | chr4_1:2250376-2250395 | None:intergenic | 40.0% | |
AATGTGCTTTGGTAAAGCCT+AGG | - | chr4_1:2250377-2250396 | None:intergenic | 40.0% | |
TCGCTAGCTGTAGCAATATT+GGG | - | chr4_1:2250456-2250475 | None:intergenic | 40.0% | |
TTCGCTAGCTGTAGCAATAT+TGG | - | chr4_1:2250457-2250476 | None:intergenic | 40.0% | |
TAGCAGCTCCTTACAACAAA+AGG | - | chr4_1:2250603-2250622 | None:intergenic | 40.0% | |
GAAGGATCATGAGAGTTTGT+TGG | - | chr4_1:2250900-2250919 | None:intergenic | 40.0% | |
ATGAGAGTGAGAGTTTGTGA+AGG | - | chr4_1:2250918-2250937 | None:intergenic | 40.0% | |
ATGAGAGTGAGAGTTTGTGA+AGG | - | chr4_1:2250918-2250937 | None:intergenic | 40.0% | |
!! | GTTTTATTAGGACCGTATCC+AGG | - | chr4_1:2251033-2251052 | None:intergenic | 40.0% |
AATAACTACACACAGTCACG+AGG | - | chr4_1:2251096-2251115 | None:intergenic | 40.0% | |
CGTGACTGTGTGTAGTTATT+CGG | + | chr4_1:2251096-2251115 | Msa0529070:intron | 40.0% | |
TTCAGTGCAATTCACTTCTC+TGG | + | chr4_1:2251428-2251447 | Msa0529070:CDS | 40.0% | |
CAAATTTCCAGTCCAGCAAT+AGG | - | chr4_1:2251501-2251520 | None:intergenic | 40.0% | |
TCCCACTCAACTTGATAGGT+TGG | + | chr4_1:2246238-2246257 | Msa0529070:CDS | 45.0% | |
ACTCGAAATTGAGGTCCAAG+AGG | + | chr4_1:2246300-2246319 | Msa0529070:CDS | 45.0% | |
TTACTCAGTGTTACGGGAAG+AGG | + | chr4_1:2246358-2246377 | Msa0529070:CDS | 45.0% | |
! | CTTCACATCCCTCTCAGTTT+TGG | + | chr4_1:2246437-2246456 | Msa0529070:intron | 45.0% |
GAGAATCCACCAAAACTGAG+AGG | - | chr4_1:2246449-2246468 | None:intergenic | 45.0% | |
TGAGTTTGTGGGTGAAGAAG+AGG | - | chr4_1:2246500-2246519 | None:intergenic | 45.0% | |
TCTTCTTCACCCACAAACTC+AGG | + | chr4_1:2246499-2246518 | Msa0529070:intron | 45.0% | |
GTGACGTTACCTGAGTTTGT+GGG | - | chr4_1:2246511-2246530 | None:intergenic | 45.0% | |
!! | ATGACCTATTAGGGGTGTTC+TGG | + | chr4_1:2246734-2246753 | Msa0529070:intron | 45.0% |
GACGTCACCTTCCATATTCA+TGG | + | chr4_1:2246990-2247009 | Msa0529070:intron | 45.0% | |
TCTTGAGTTTAATGCGGCTC+TGG | + | chr4_1:2247624-2247643 | Msa0529070:CDS | 45.0% | |
!! | CTGGTTTTTGTCATCAGCTC+TGG | + | chr4_1:2247726-2247745 | Msa0529070:CDS | 45.0% |
!! | TTGTCATCAGCTCTGGGATT+TGG | + | chr4_1:2247733-2247752 | Msa0529070:CDS | 45.0% |
!! | TGTCATCAGCTCTGGGATTT+GGG | + | chr4_1:2247734-2247753 | Msa0529070:CDS | 45.0% |
GCCGAACTTTCTTGGTAGAA+TGG | + | chr4_1:2248111-2248130 | Msa0529070:intron | 45.0% | |
ATTGAGGATTTAGGAGGGGA+AGG | + | chr4_1:2248186-2248205 | Msa0529070:intron | 45.0% | |
TTGAGGATTTAGGAGGGGAA+GGG | + | chr4_1:2248187-2248206 | Msa0529070:intron | 45.0% | |
TTTGGATGGAGGGTTTAGGA+GGG | - | chr4_1:2248381-2248400 | None:intergenic | 45.0% | |
TGTGTTTGGATGGAGGGTTT+AGG | - | chr4_1:2248385-2248404 | None:intergenic | 45.0% | |
! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr4_1:2248391-2248410 | None:intergenic | 45.0% |
! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr4_1:2248392-2248411 | None:intergenic | 45.0% |
TCCATCCAAACACACCCTTA+AGG | + | chr4_1:2248391-2248410 | Msa0529070:intron | 45.0% | |
! | TCCTTAAGGGTGTGTTTGGA+TGG | - | chr4_1:2248395-2248414 | None:intergenic | 45.0% |
CGATATACGAGGGAGACAAA+AGG | + | chr4_1:2248457-2248476 | Msa0529070:intron | 45.0% | |
GAGAAAACTGTGAGGTTGAC+TGG | + | chr4_1:2248503-2248522 | Msa0529070:intron | 45.0% | |
AAAACTGTGAGGTTGACTGG+CGG | + | chr4_1:2248506-2248525 | Msa0529070:intron | 45.0% | |
! | ACTATCTAGGATGGCATGCT+TGG | + | chr4_1:2248676-2248695 | Msa0529070:intron | 45.0% |
!! | TAGCTTCCCTTGACTTGGAA+AGG | - | chr4_1:2248796-2248815 | None:intergenic | 45.0% |
GACAACATAACGTAGGCATG+AGG | + | chr4_1:2248932-2248951 | Msa0529070:intron | 45.0% | |
AACATAACGTAGGCATGAGG+TGG | + | chr4_1:2248935-2248954 | Msa0529070:intron | 45.0% | |
ACTGAAGCAAACTGTTGTGG+AGG | + | chr4_1:2249016-2249035 | Msa0529070:intron | 45.0% | |
AGAGTAACATTTCTTCCCCG+AGG | + | chr4_1:2249069-2249088 | Msa0529070:intron | 45.0% | |
GAGTAACATTTCTTCCCCGA+GGG | + | chr4_1:2249070-2249089 | Msa0529070:intron | 45.0% | |
AGTAACATTTCTTCCCCGAG+GGG | + | chr4_1:2249071-2249090 | Msa0529070:intron | 45.0% | |
! | TCTCAATGGTTTTCTCCCCT+CGG | - | chr4_1:2249089-2249108 | None:intergenic | 45.0% |
! | TTGCAGCTTTAGTGAGTGTC+AGG | - | chr4_1:2249219-2249238 | None:intergenic | 45.0% |
TGACACTCACTAAAGCTGCA+AGG | + | chr4_1:2249218-2249237 | Msa0529070:intron | 45.0% | |
CACTAAAGCTGCAAGGTCAA+CGG | + | chr4_1:2249225-2249244 | Msa0529070:intron | 45.0% | |
TGATCGGGCCAATTCAAATG+AGG | - | chr4_1:2249272-2249291 | None:intergenic | 45.0% | |
TGCTGACATACTCTGGTGAT+CGG | - | chr4_1:2249288-2249307 | None:intergenic | 45.0% | |
AATCCTCTGCTGACATACTC+TGG | - | chr4_1:2249295-2249314 | None:intergenic | 45.0% | |
TGGATTCTCTCGCGATAGAT+GGG | - | chr4_1:2249492-2249511 | None:intergenic | 45.0% | |
TTGGATTCTCTCGCGATAGA+TGG | - | chr4_1:2249493-2249512 | None:intergenic | 45.0% | |
! | GTTGACTCTCTCAACATGGT+TGG | - | chr4_1:2249607-2249626 | None:intergenic | 45.0% |
!! | GTTCGTTGACTCTCTCAACA+TGG | - | chr4_1:2249611-2249630 | None:intergenic | 45.0% |
TTGAGAGAGTCAACGAACCT+TGG | + | chr4_1:2249613-2249632 | Msa0529070:intron | 45.0% | |
GTGCCTCTGAGTTTCTTCTT+TGG | - | chr4_1:2249641-2249660 | None:intergenic | 45.0% | |
GTATGCTTCCTAGTGTTCAG+TGG | + | chr4_1:2250147-2250166 | Msa0529070:intron | 45.0% | |
! | GCTTTTAGTGGCTACTAGGT+AGG | - | chr4_1:2250312-2250331 | None:intergenic | 45.0% |
! | CCATGCTTTTAGTGGCTACT+AGG | - | chr4_1:2250316-2250335 | None:intergenic | 45.0% |
CCTAGTAGCCACTAAAAGCA+TGG | + | chr4_1:2250313-2250332 | Msa0529070:intron | 45.0% | |
! | ACGGGAAACCATGCTTTTAG+TGG | - | chr4_1:2250324-2250343 | None:intergenic | 45.0% |
AAGCTTCGACTCTTTCGCTA+CGG | - | chr4_1:2250343-2250362 | None:intergenic | 45.0% | |
AACTCGATGCTTGTGCAGAA+AGG | - | chr4_1:2250513-2250532 | None:intergenic | 45.0% | |
CAGTCTGCAGCAATGCAATA+TGG | - | chr4_1:2251229-2251248 | None:intergenic | 45.0% | |
AGGAGGATCTCCTTCAATGT+TGG | - | chr4_1:2251260-2251279 | None:intergenic | 45.0% | |
! | CTGCATTGTCACTCCTCTTT+TGG | + | chr4_1:2251319-2251338 | Msa0529070:CDS | 45.0% |
!! | TACAGCTTGTTGCCACTTCA+TGG | - | chr4_1:2251390-2251409 | None:intergenic | 45.0% |
TTCATCATTGGGTGTGTCCT+TGG | + | chr4_1:2251470-2251489 | Msa0529070:CDS | 45.0% | |
!!! | ATAAAAAAAAATATTTTACA+GGG | - | chr4_1:2246619-2246638 | None:intergenic | 5.0% |
!!! | AATAAAAAAAAATATTTTAC+AGG | - | chr4_1:2246620-2246639 | None:intergenic | 5.0% |
!!! | TATTTTTTTTACAAAAATTT+TGG | + | chr4_1:2246704-2246723 | Msa0529070:intron | 5.0% |
!! | ATAAAACAATATATTATTTA+GGG | - | chr4_1:2250982-2251001 | None:intergenic | 5.0% |
!! | AATAAAACAATATATTATTT+AGG | - | chr4_1:2250983-2251002 | None:intergenic | 5.0% |
!!! | AAATAATATATTGTTTTATT+TGG | + | chr4_1:2250983-2251002 | Msa0529070:intron | 5.0% |
! | CCTTTTGCAATGGCACCTCT+TGG | - | chr4_1:2246318-2246337 | None:intergenic | 50.0% |
!! | CCAAGAGGTGCCATTGCAAA+AGG | + | chr4_1:2246315-2246334 | Msa0529070:CDS | 50.0% |
TACGGGAAGAGGATAGTCCA+TGG | + | chr4_1:2246369-2246388 | Msa0529070:CDS | 50.0% | |
CATACATCACCACTCTGCCA+TGG | - | chr4_1:2246389-2246408 | None:intergenic | 50.0% | |
! | CATGGCAGAGTGGTGATGTA+TGG | + | chr4_1:2246387-2246406 | Msa0529070:CDS | 50.0% |
!! | CACATCCCTCTCAGTTTTGG+TGG | + | chr4_1:2246440-2246459 | Msa0529070:intron | 50.0% |
TCCTGTGAAGAACGCAACGA+CGG | - | chr4_1:2246471-2246490 | None:intergenic | 50.0% | |
GGTGACGTTACCTGAGTTTG+TGG | - | chr4_1:2246512-2246531 | None:intergenic | 50.0% | |
GACACTCATATGCAGAGGTC+GGG | - | chr4_1:2247164-2247183 | None:intergenic | 50.0% | |
GGACACTCATATGCAGAGGT+CGG | - | chr4_1:2247165-2247184 | None:intergenic | 50.0% | |
GCAAGGACACTCATATGCAG+AGG | - | chr4_1:2247169-2247188 | None:intergenic | 50.0% | |
TTTGGTCTAAAGGCGAGAGC+AGG | - | chr4_1:2247989-2248008 | None:intergenic | 50.0% | |
! | TCAGTCTGGGATGCAAACCA+TGG | + | chr4_1:2248039-2248058 | Msa0529070:intron | 50.0% |
! | CAGTCTGGGATGCAAACCAT+GGG | + | chr4_1:2248040-2248059 | Msa0529070:intron | 50.0% |
! | AGTCTGGGATGCAAACCATG+GGG | + | chr4_1:2248041-2248060 | Msa0529070:intron | 50.0% |
TTGGATGGAGGGTTTAGGAG+GGG | - | chr4_1:2248380-2248399 | None:intergenic | 50.0% | |
GTTTGGATGGAGGGTTTAGG+AGG | - | chr4_1:2248382-2248401 | None:intergenic | 50.0% | |
GACTGGGAGTTGCACTATCT+AGG | + | chr4_1:2248663-2248682 | Msa0529070:intron | 50.0% | |
GGGAGTTGCACTATCTAGGA+TGG | + | chr4_1:2248667-2248686 | Msa0529070:intron | 50.0% | |
GGTTGAGCTAGAGCATGATG+TGG | + | chr4_1:2248908-2248927 | Msa0529070:intron | 50.0% | |
GCATGAGGTGGAGTTTGATG+CGG | + | chr4_1:2248947-2248966 | Msa0529070:intron | 50.0% | |
AAGCTGTGGAACAGCCTGAA+AGG | + | chr4_1:2248979-2248998 | Msa0529070:intron | 50.0% | |
TATGCCTTCACCAGCCTTTC+AGG | - | chr4_1:2248996-2249015 | None:intergenic | 50.0% | |
GAAGCAAACTGTTGTGGAGG+TGG | + | chr4_1:2249019-2249038 | Msa0529070:intron | 50.0% | |
TGTGGAGGTGGATGAAACTG+TGG | + | chr4_1:2249031-2249050 | Msa0529070:intron | 50.0% | |
! | TCAATGGTTTTCTCCCCTCG+GGG | - | chr4_1:2249087-2249106 | None:intergenic | 50.0% |
! | CTCAATGGTTTTCTCCCCTC+GGG | - | chr4_1:2249088-2249107 | None:intergenic | 50.0% |
GACAGATATGAACCAGGGGA+AGG | + | chr4_1:2249107-2249126 | Msa0529070:intron | 50.0% | |
AGATATGAACCAGGGGAAGG+AGG | + | chr4_1:2249110-2249129 | Msa0529070:intron | 50.0% | |
TGAGGTCATGATGGCTGCTA+TGG | - | chr4_1:2249254-2249273 | None:intergenic | 50.0% | |
GCTGACATACTCTGGTGATC+GGG | - | chr4_1:2249287-2249306 | None:intergenic | 50.0% | |
TCACCAGAGTATGTCAGCAG+AGG | + | chr4_1:2249289-2249308 | Msa0529070:intron | 50.0% | |
GTCTCTGTTACAGAGCTTGC+TGG | + | chr4_1:2249358-2249377 | Msa0529070:intron | 50.0% | |
GGATTCTCTCGCGATAGATG+GGG | - | chr4_1:2249491-2249510 | None:intergenic | 50.0% | |
! | TCGACCACCACACACTTTTC+AGG | - | chr4_1:2249770-2249789 | None:intergenic | 50.0% |
! | TGAAAAGTGTGTGGTGGTCG+AGG | + | chr4_1:2249769-2249788 | Msa0529070:intron | 50.0% |
AGCTGCTGCACTAGTCAAAG+TGG | + | chr4_1:2250120-2250139 | Msa0529070:intron | 50.0% | |
CTGCACTAGTCAAAGTGGCA+TGG | + | chr4_1:2250125-2250144 | Msa0529070:intron | 50.0% | |
TCACAGCACCACTGAACACT+AGG | - | chr4_1:2250158-2250177 | None:intergenic | 50.0% | |
AGCTTCGACTCTTTCGCTAC+GGG | - | chr4_1:2250342-2250361 | None:intergenic | 50.0% | |
AAGCTTCTTCAAGGGACCCT+AGG | + | chr4_1:2250357-2250376 | Msa0529070:intron | 50.0% | |
ACTACACACAGTCACGAGGT+CGG | - | chr4_1:2251092-2251111 | None:intergenic | 50.0% | |
CACTTTCCTCCACCATGAAG+TGG | + | chr4_1:2251375-2251394 | Msa0529070:CDS | 50.0% | |
! | TTGTTGCCACTTCATGGTGG+AGG | - | chr4_1:2251384-2251403 | None:intergenic | 50.0% |
!! | AGCTTGTTGCCACTTCATGG+TGG | - | chr4_1:2251387-2251406 | None:intergenic | 50.0% |
TCCTTGGATGCTCCTATTGC+TGG | + | chr4_1:2251486-2251505 | Msa0529070:CDS | 50.0% | |
!! | TCCAGCAATAGGAGCATCCA+AGG | - | chr4_1:2251490-2251509 | None:intergenic | 50.0% |
GAGGATAGTCCATGGCAGAG+TGG | + | chr4_1:2246377-2246396 | Msa0529070:CDS | 55.0% | |
TCCGTCGTTGCGTTCTTCAC+AGG | + | chr4_1:2246467-2246486 | Msa0529070:intron | 55.0% | |
! | GTCTGGGATGCAAACCATGG+GGG | + | chr4_1:2248042-2248061 | Msa0529070:intron | 55.0% |
AGGATTTAGGAGGGGAAGGG+AGG | + | chr4_1:2248190-2248209 | Msa0529070:intron | 55.0% | |
GGATTTAGGAGGGGAAGGGA+GGG | + | chr4_1:2248191-2248210 | Msa0529070:intron | 55.0% | |
GATTTAGGAGGGGAAGGGAG+GGG | + | chr4_1:2248192-2248211 | Msa0529070:intron | 55.0% | |
ATGGAGGGTTTAGGAGGGGA+GGG | - | chr4_1:2248376-2248395 | None:intergenic | 55.0% | |
GGTTGACTGGCGGAGGATAT+CGG | + | chr4_1:2248516-2248535 | Msa0529070:intron | 55.0% | |
GTTGACTGGCGGAGGATATC+GGG | + | chr4_1:2248517-2248536 | Msa0529070:intron | 55.0% | |
GAACAAGGGGACGCAAGCAT+AGG | + | chr4_1:2248887-2248906 | Msa0529070:intron | 55.0% | |
TGAGGTGGAGTTTGATGCGG+TGG | + | chr4_1:2248950-2248969 | Msa0529070:intron | 55.0% | |
TGCGGTGGTAGCATAAGCTG+TGG | + | chr4_1:2248965-2248984 | Msa0529070:intron | 55.0% | |
TGTGGAACAGCCTGAAAGGC+TGG | + | chr4_1:2248983-2249002 | Msa0529070:intron | 55.0% | |
ACAGCCTGAAAGGCTGGTGA+AGG | + | chr4_1:2248989-2249008 | Msa0529070:intron | 55.0% | |
TATGAACCAGGGGAAGGAGG+TGG | + | chr4_1:2249113-2249132 | Msa0529070:intron | 55.0% | |
GGTCATGATGGCTGCTATGG+TGG | - | chr4_1:2249251-2249270 | None:intergenic | 55.0% | |
CGAACTCTCTGGTGAAGTGC+AGG | + | chr4_1:2249381-2249400 | Msa0529070:intron | 55.0% | |
GGGGAAGATTACCAGAGCAG+TGG | + | chr4_1:2249717-2249736 | Msa0529070:intron | 55.0% | |
AAAGTGTGTGGTGGTCGAGG+TGG | + | chr4_1:2249772-2249791 | Msa0529070:intron | 55.0% | |
GGATGCTCCTATTGCTGGAC+TGG | + | chr4_1:2251491-2251510 | Msa0529070:CDS | 55.0% | |
GATGGAGGGTTTAGGAGGGG+AGG | - | chr4_1:2248377-2248396 | None:intergenic | 60.0% | |
ACTGTGAGGTTGACTGGCGG+AGG | + | chr4_1:2248509-2248528 | Msa0529070:intron | 60.0% | |
ACTGGCGGAGGATATCGGGA+TGG | + | chr4_1:2248521-2248540 | Msa0529070:intron | 60.0% | |
GAAGGAGGTGGAGCCTAGAG+AGG | + | chr4_1:2249125-2249144 | Msa0529070:intron | 60.0% | |
!! | GAGCTTGCTGGCGAACTCTC+TGG | + | chr4_1:2249370-2249389 | Msa0529070:intron | 60.0% |
CACACAGTCACGAGGTCGGT+TGG | - | chr4_1:2251088-2251107 | None:intergenic | 60.0% | |
TTAGGAGGGGAAGGGAGGGG+AGG | + | chr4_1:2248195-2248214 | Msa0529070:intron | 65.0% | |
TAGGAGGGGAAGGGAGGGGA+GGG | + | chr4_1:2248196-2248215 | Msa0529070:intron | 65.0% | |
TAGGCTCCACCTCCTTCCCC+TGG | - | chr4_1:2249122-2249141 | None:intergenic | 65.0% | |
TGTGGTGGTCGAGGTGGTGC+TGG | + | chr4_1:2249778-2249797 | Msa0529070:intron | 65.0% | |
! | GGTGGTCGAGGTGGTGCTGG+TGG | + | chr4_1:2249781-2249800 | Msa0529070:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 2246197 | 2251602 | 2246197 | ID=Msa0529070;Name=Msa0529070 |
chr4_1 | mRNA | 2246197 | 2251602 | 2246197 | ID=Msa0529070-mRNA-1;Parent=Msa0529070;Name=Msa0529070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|0|0.66|3|16|260 |
chr4_1 | exon | 2246197 | 2246418 | 2246197 | ID=Msa0529070-mRNA-1:exon:654;Parent=Msa0529070-mRNA-1 |
chr4_1 | exon | 2247598 | 2247816 | 2247598 | ID=Msa0529070-mRNA-1:exon:655;Parent=Msa0529070-mRNA-1 |
chr4_1 | exon | 2251245 | 2251602 | 2251245 | ID=Msa0529070-mRNA-1:exon:656;Parent=Msa0529070-mRNA-1 |
chr4_1 | CDS | 2246197 | 2246418 | 2246197 | ID=Msa0529070-mRNA-1:cds;Parent=Msa0529070-mRNA-1 |
chr4_1 | CDS | 2247598 | 2247816 | 2247598 | ID=Msa0529070-mRNA-1:cds;Parent=Msa0529070-mRNA-1 |
chr4_1 | CDS | 2251245 | 2251586 | 2251245 | ID=Msa0529070-mRNA-1:cds;Parent=Msa0529070-mRNA-1 |
chr4_1 | three_prime_UTR | 2251587 | 2251602 | 2251587 | ID=Msa0529070-mRNA-1:three_prime_utr;Parent=Msa0529070-mRNA-1 |
Gene Sequence |
Protein sequence |