AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529070 MtrunA17_Chr4g0021461 84.694 294 11 1 1 260 1 294 4.16e-177 489
Msa0529070 MtrunA17_Chr8g0361751 39.796 98 59 0 154 251 219 316 2.57e-17 80.1
Msa0529070 MtrunA17_Chr1g0202351 34.021 97 64 0 155 251 210 306 4.44e-13 67.8
Msa0529070 MtrunA17_Chr8g0387651 29.932 147 91 2 117 251 190 336 1.06e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529070 AT2G20725.1 50.820 183 89 1 76 257 119 301 5.51e-59 189
Msa0529070 AT1G14270.4 42.000 100 58 0 160 259 113 212 6.02e-19 83.2
Msa0529070 AT1G14270.3 42.000 100 58 0 160 259 113 212 6.02e-19 83.2
Msa0529070 AT1G14270.2 42.000 100 58 0 160 259 133 232 9.48e-19 83.2
Msa0529070 AT1G14270.1 34.228 149 94 1 115 259 190 338 3.86e-18 83.2
Msa0529070 AT5G60750.1 32.990 97 65 0 155 251 243 339 4.54e-12 65.5

Find 52 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAGATTACTTGGCTTTA+AGG 0.139149 4_1:+2247795 Msa0529070:CDS
CTGCATTGTCACTCCTCTTT+TGG 0.166860 4_1:+2251319 Msa0529070:CDS
ATTTGGGTTTATTGCTCTTC+TGG 0.227639 4_1:+2247750 Msa0529070:CDS
TTGTCATCAGCTCTGGGATT+TGG 0.232068 4_1:+2247733 Msa0529070:CDS
TGTCATCAGCTCTGGGATTT+GGG 0.270923 4_1:+2247734 Msa0529070:CDS
TTCCCGTAACACTGAGTAAA+AGG 0.285731 4_1:-2246354 None:intergenic
TCCTTGGATGCTCCTATTGC+TGG 0.317162 4_1:+2251486 Msa0529070:CDS
CTACTTGCTGACAGATTACT+TGG 0.328616 4_1:+2247787 Msa0529070:CDS
AATTTCCCACTCAACTTGAT+AGG 0.351762 4_1:+2246234 Msa0529070:CDS
TTTGTACAACTGTTCATCAT+TGG 0.365425 4_1:+2251458 Msa0529070:CDS
TACAGCTTGTTGCCACTTCA+TGG 0.373289 4_1:-2251387 None:intergenic
TTCAGTGCAATTCACTTCTC+TGG 0.383677 4_1:+2251428 Msa0529070:CDS
CAAATTTCCAGTCCAGCAAT+AGG 0.384377 4_1:-2251498 None:intergenic
ATATATGTCATGTCAGTAAC+GGG 0.385237 4_1:+2246188 None:intergenic
TTCATCATTGGGTGTGTCCT+TGG 0.388968 4_1:+2251470 Msa0529070:CDS
AATTATTGAGTGACAGGAAC+TGG 0.398989 4_1:+2247707 Msa0529070:CDS
CTCTTGAGATATCACTGTTT+AGG 0.403202 4_1:-2251277 None:intergenic
TTGGAAGAAGTTGTTTATAG+AGG 0.413244 4_1:+2251338 Msa0529070:CDS
TTGAATGGTAAGAAGAGATA+TGG 0.430408 4_1:-2247599 None:intergenic
TTGTACAACTGTTCATCATT+GGG 0.432716 4_1:+2251459 Msa0529070:CDS
TTACTCAGTGTTACGGGAAG+AGG 0.442324 4_1:+2246358 Msa0529070:CDS
TCTTGAGTTTAATGCGGCTC+TGG 0.446196 4_1:+2247624 Msa0529070:CDS
CCAAGAGGTGCCATTGCAAA+AGG 0.465524 4_1:+2246315 Msa0529070:CDS
GAAAAGATAAAGAACAAGAT+TGG 0.486664 4_1:-2246411 None:intergenic
GGATGCTCCTATTGCTGGAC+TGG 0.488522 4_1:+2251491 Msa0529070:CDS
ATTAAACTCAAGAACTTGAA+TGG 0.494812 4_1:-2247614 None:intergenic
CATGGCAGAGTGGTGATGTA+TGG 0.496794 4_1:+2246387 Msa0529070:CDS
TAAACAACTTCTTCCAAAAG+AGG 0.497470 4_1:-2251332 None:intergenic
AGGAGGATCTCCTTCAATGT+TGG 0.499718 4_1:-2251257 None:intergenic
ATAACAAATTATTGAGTGAC+AGG 0.502222 4_1:+2247701 Msa0529070:CDS
TCCCACTCAACTTGATAGGT+TGG 0.507603 4_1:+2246238 Msa0529070:CDS
TTGAGATATCACTGTTTAGG+AGG 0.536495 4_1:-2251274 None:intergenic
TATATATGTCATGTCAGTAA+CGG 0.555577 4_1:+2246187 None:intergenic
TTGTTGCCACTTCATGGTGG+AGG 0.558411 4_1:-2251381 None:intergenic
CAAATAGAAACTCGAAATTG+AGG 0.559048 4_1:+2246291 Msa0529070:CDS
TCCAGCAATAGGAGCATCCA+AGG 0.564400 4_1:-2251487 None:intergenic
TGTTAGCAATCCAACATTGA+AGG 0.566242 4_1:+2251247 Msa0529070:CDS
CACTTTCCTCCACCATGAAG+TGG 0.568923 4_1:+2251375 Msa0529070:CDS
AAACTTGAAAATTTATACTG+TGG 0.587683 4_1:-2247670 None:intergenic
TTTATACTGTGGTTTAGCCG+TGG 0.593031 4_1:-2247659 None:intergenic
TACCAACCTATCAAGTTGAG+TGG 0.599341 4_1:-2246240 None:intergenic
CATACATCACCACTCTGCCA+TGG 0.603331 4_1:-2246386 None:intergenic
ACCAACCTATCAAGTTGAGT+GGG 0.612583 4_1:-2246239 None:intergenic
AGCTTGTTGCCACTTCATGG+TGG 0.613499 4_1:-2251384 None:intergenic
GTACAAAGAATGAATAACAA+TGG 0.630175 4_1:-2251528 None:intergenic
TCAAGTTCTTGAGTTTAATG+CGG 0.637510 4_1:+2247618 Msa0529070:CDS
TCTGGTTGTATTGAAGTCCA+CGG 0.651123 4_1:+2247642 Msa0529070:CDS
TACGGGAAGAGGATAGTCCA+TGG 0.659102 4_1:+2246369 Msa0529070:CDS
ACTCGAAATTGAGGTCCAAG+AGG 0.683963 4_1:+2246300 Msa0529070:CDS
GAGGATAGTCCATGGCAGAG+TGG 0.688866 4_1:+2246377 Msa0529070:CDS
ATGTCATGTCAGTAACGGGG+TGG 0.692719 4_1:+2246192 None:intergenic
TATATGTCATGTCAGTAACG+GGG 0.747589 4_1:+2246189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTACTAACAAAATA+AGG - chr4_1:2246547-2246566 None:intergenic 10.0%
!!! TATTTTGTTAGTAATTTTAT+TGG + chr4_1:2246547-2246566 Msa0529070:intron 10.0%
!!! ATTTTGTTAGTAATTTTATT+GGG + chr4_1:2246548-2246567 Msa0529070:intron 10.0%
!!! TAAAAAAAAATATTTTACAG+GGG - chr4_1:2246618-2246637 None:intergenic 10.0%
!!! TGAAAAAATTAATATTTTAC+AGG - chr4_1:2246647-2246666 None:intergenic 10.0%
!!! AAATCAAAAAAATATTTTAC+AGG + chr4_1:2246782-2246801 Msa0529070:intron 10.0%
!!! AATCAAAAAAATATTTTACA+GGG + chr4_1:2246783-2246802 Msa0529070:intron 10.0%
!! AGAATTAAAAAAATAAATGA+AGG + chr4_1:2250035-2250054 Msa0529070:intron 10.0%
!! GAATTAAAAAAATAAATGAA+GGG + chr4_1:2250036-2250055 Msa0529070:intron 10.0%
!!! TGGAAAAAAAAAACTTTTAT+AGG + chr4_1:2246754-2246773 Msa0529070:intron 15.0%
!!! GGAAAAAAAAAACTTTTATA+GGG + chr4_1:2246755-2246774 Msa0529070:intron 15.0%
!!! ATCAAAAAAATATTTTACAG+GGG + chr4_1:2246784-2246803 Msa0529070:intron 15.0%
!! TATTTAAATTACAAACAGTT+TGG - chr4_1:2246938-2246957 None:intergenic 15.0%
!! TTAAATAAATCTATACGAAA+AGG - chr4_1:2247224-2247243 None:intergenic 15.0%
!!! TAACAAATTTTAGTTGTAAT+TGG + chr4_1:2247256-2247275 Msa0529070:intron 15.0%
!! TATGTTAAATAATCTTCTAA+AGG - chr4_1:2247315-2247334 None:intergenic 15.0%
!! TTAGAAGATTATTTAACATA+AGG + chr4_1:2247315-2247334 Msa0529070:intron 15.0%
!! AAATTTCTATAAGTGATAAT+CGG - chr4_1:2247904-2247923 None:intergenic 15.0%
!!! TAAAGTTAACATTTGTTAAA+GGG - chr4_1:2248154-2248173 None:intergenic 15.0%
!! TTTAACAAATGTTAACTTTA+GGG + chr4_1:2248154-2248173 Msa0529070:intron 15.0%
!!! AGGAATTTTTTTGTTTTATT+AGG - chr4_1:2251045-2251064 None:intergenic 15.0%
!! ATAAAAATAAGTCATGAATA+AGG - chr4_1:2251564-2251583 None:intergenic 15.0%
!!! AGTTTCTATTTGTGTTTTTT+TGG - chr4_1:2246283-2246302 None:intergenic 20.0%
!! AAAATAAGGATAAAGGATAA+AGG - chr4_1:2246533-2246552 None:intergenic 20.0%
!! TACTAACAAAATAAGGATAA+AGG - chr4_1:2246540-2246559 None:intergenic 20.0%
!!! AAAAAAAAACTTTTATAGGG+TGG + chr4_1:2246758-2246777 Msa0529070:intron 20.0%
!! TTCGTATAGATTTATTTAAG+TGG + chr4_1:2247225-2247244 Msa0529070:intron 20.0%
!! AAGATTATTTAACATAAGGT+TGG + chr4_1:2247319-2247338 Msa0529070:intron 20.0%
!!! GAATTGGAATTTTCATTTTA+AGG + chr4_1:2247430-2247449 Msa0529070:intron 20.0%
!!! TTTTATACAACAAGTTTCTA+AGG + chr4_1:2247492-2247511 Msa0529070:intron 20.0%
!!! TGTTAAGATATTTTAACACA+TGG + chr4_1:2247552-2247571 Msa0529070:intron 20.0%
!! AAACTTGAAAATTTATACTG+TGG - chr4_1:2247673-2247692 None:intergenic 20.0%
!! TCACTATATTTACATCTATT+TGG - chr4_1:2247962-2247981 None:intergenic 20.0%
!! AAATAGATGTAAATATAGTG+AGG + chr4_1:2247961-2247980 Msa0529070:intron 20.0%
!!! GAATTTTTATTTTGGTCTAA+AGG - chr4_1:2247999-2248018 None:intergenic 20.0%
!!! CTACACAAGAATTTTTATTT+TGG - chr4_1:2248007-2248026 None:intergenic 20.0%
!!! CTAAAGTTAACATTTGTTAA+AGG - chr4_1:2248155-2248174 None:intergenic 20.0%
!! CTTTAACAAATGTTAACTTT+AGG + chr4_1:2248153-2248172 Msa0529070:intron 20.0%
!! ATGATCACTAAACTATTATT+AGG + chr4_1:2250563-2250582 Msa0529070:intron 20.0%
!! CTTGTTTCATTAAGAAAATA+AGG - chr4_1:2250627-2250646 None:intergenic 20.0%
!! AAAAAAAACACAAAATTCGA+TGG - chr4_1:2251185-2251204 None:intergenic 20.0%
!! ATGGTAAAAGTTACATTAAA+GGG - chr4_1:2251210-2251229 None:intergenic 20.0%
!! TATGGTAAAAGTTACATTAA+AGG - chr4_1:2251211-2251230 None:intergenic 20.0%
! GAAAAGATAAAGAACAAGAT+TGG - chr4_1:2246414-2246433 None:intergenic 25.0%
!! TTTTGTATGATCTATTAGGT+GGG - chr4_1:2246675-2246694 None:intergenic 25.0%
!! TTTTTGTATGATCTATTAGG+TGG - chr4_1:2246676-2246695 None:intergenic 25.0%
! ACCTAATAGATCATACAAAA+AGG + chr4_1:2246675-2246694 Msa0529070:intron 25.0%
!! TCCTTTTTGTATGATCTATT+AGG - chr4_1:2246679-2246698 None:intergenic 25.0%
! ATGGAAATAACCTATATTAC+AGG + chr4_1:2246813-2246832 Msa0529070:intron 25.0%
! TGGAAATAACCTATATTACA+GGG + chr4_1:2246814-2246833 Msa0529070:intron 25.0%
! GTGTATAAAATTAGGGTTAA+CGG - chr4_1:2246848-2246867 None:intergenic 25.0%
!!! CAGTTTGGTGTATAAAATTA+GGG - chr4_1:2246855-2246874 None:intergenic 25.0%
!!! TCAGTTTGGTGTATAAAATT+AGG - chr4_1:2246856-2246875 None:intergenic 25.0%
! AATTACAAACAGTTTGGATT+TGG - chr4_1:2246932-2246951 None:intergenic 25.0%
! TAATTTAAATACGTTCGACA+AGG + chr4_1:2246947-2246966 Msa0529070:intron 25.0%
! GAAAATAGTTCTTCTAAATC+TGG + chr4_1:2247072-2247091 Msa0529070:intron 25.0%
! GTATCCTTATGGAATTAATA+CGG + chr4_1:2247282-2247301 Msa0529070:intron 25.0%
! TCTTATGTTGCAAATATAAC+AGG + chr4_1:2247371-2247390 Msa0529070:intron 25.0%
!!! CTTTCATTTTCTGAAATGAA+AGG + chr4_1:2247466-2247485 Msa0529070:intron 25.0%
! ATTAAACTCAAGAACTTGAA+TGG - chr4_1:2247617-2247636 None:intergenic 25.0%
! ATAACAAATTATTGAGTGAC+AGG + chr4_1:2247701-2247720 Msa0529070:CDS 25.0%
!! CTTATAGAAATTTTGCTACT+AGG + chr4_1:2247911-2247930 Msa0529070:intron 25.0%
!! AGAGGTTTTTGAACATAAAT+AGG + chr4_1:2249143-2249162 Msa0529070:intron 25.0%
!!! GTTTTCTAAGAAAAATGTCA+TGG - chr4_1:2249427-2249446 None:intergenic 25.0%
! ATTGCAGATTCATATAACTA+TGG + chr4_1:2249532-2249551 Msa0529070:intron 25.0%
!!! TTTTCAGGTTATGATTTCTA+TGG - chr4_1:2249755-2249774 None:intergenic 25.0%
!! TCAATGATTTGGAAAATGAA+AGG + chr4_1:2249895-2249914 Msa0529070:intron 25.0%
!! AGTTATTGTTGTTACAAAAG+CGG + chr4_1:2250010-2250029 Msa0529070:intron 25.0%
! TTAGGTATACATTATCAACT+AGG + chr4_1:2250097-2250116 Msa0529070:intron 25.0%
! TCTTTACAATTCAAAGTCAA+AGG + chr4_1:2250226-2250245 Msa0529070:intron 25.0%
! TAACAACACTAGTAATAGAT+TGG + chr4_1:2250397-2250416 Msa0529070:intron 25.0%
!!! ATAGATTACCTTTTGTTGTA+AGG + chr4_1:2250592-2250611 Msa0529070:intron 25.0%
! TGTATTAACAAAATTTCAGG+AGG - chr4_1:2251065-2251084 None:intergenic 25.0%
! TGGTGTATTAACAAAATTTC+AGG - chr4_1:2251068-2251087 None:intergenic 25.0%
! GTACAAAGAATGAATAACAA+TGG - chr4_1:2251531-2251550 None:intergenic 25.0%
CAAATAGAAACTCGAAATTG+AGG + chr4_1:2246291-2246310 Msa0529070:CDS 30.0%
! GTGTTTTATCCCTGTAATAT+AGG + chr4_1:2246577-2246596 Msa0529070:intron 30.0%
! TGGTTTTTGTATGACCTATT+AGG + chr4_1:2246724-2246743 Msa0529070:intron 30.0%
! GGTTTTTGTATGACCTATTA+GGG + chr4_1:2246725-2246744 Msa0529070:intron 30.0%
! GTTTTTGTATGACCTATTAG+GGG + chr4_1:2246726-2246745 Msa0529070:intron 30.0%
! TATTTTACAGGGGATAAACA+TGG + chr4_1:2246794-2246813 Msa0529070:intron 30.0%
GGAAATAACCTATATTACAG+GGG + chr4_1:2246815-2246834 Msa0529070:intron 30.0%
ATCATTTGAGTCCATGAATA+TGG - chr4_1:2247004-2247023 None:intergenic 30.0%
TCAAATGTTTAGTAATCGCA+AGG - chr4_1:2247186-2247205 None:intergenic 30.0%
!! GTAATTGGTTTGTATCCTTA+TGG + chr4_1:2247271-2247290 Msa0529070:intron 30.0%
ATCACCGTATTAATTCCATA+AGG - chr4_1:2247289-2247308 None:intergenic 30.0%
TAAATTTGTGCAGTTCTGTA+AGG + chr4_1:2247405-2247424 Msa0529070:intron 30.0%
!! ATACAACAAGTTTCTAAGGT+AGG + chr4_1:2247496-2247515 Msa0529070:intron 30.0%
AAAGTCAAAACAACGTGAAA+AGG - chr4_1:2247532-2247551 None:intergenic 30.0%
!! TCTTTTTCATTCACAAATGC+AGG + chr4_1:2247576-2247595 Msa0529070:intron 30.0%
TTGAATGGTAAGAAGAGATA+TGG - chr4_1:2247602-2247621 None:intergenic 30.0%
TCAAGTTCTTGAGTTTAATG+CGG + chr4_1:2247618-2247637 Msa0529070:CDS 30.0%
ATGATTTCTAACGATATACG+AGG + chr4_1:2248446-2248465 Msa0529070:intron 30.0%
TGATTTCTAACGATATACGA+GGG + chr4_1:2248447-2248466 Msa0529070:intron 30.0%
TCTTTGTAAGAAAGATTCCT+TGG + chr4_1:2248601-2248620 Msa0529070:intron 30.0%
TATACATAGTGAATTGAGAC+TGG + chr4_1:2248646-2248665 Msa0529070:intron 30.0%
ATACATAGTGAATTGAGACT+GGG + chr4_1:2248647-2248666 Msa0529070:intron 30.0%
GTTGAGAAAATGGTATTTGA+TGG + chr4_1:2248760-2248779 Msa0529070:intron 30.0%
!!! AAACTGGTTTTGAATGAACA+AGG + chr4_1:2248872-2248891 Msa0529070:intron 30.0%
!!! AACTGGTTTTGAATGAACAA+GGG + chr4_1:2248873-2248892 Msa0529070:intron 30.0%
TTATGTTCAAAAACCTCTCT+AGG - chr4_1:2249141-2249160 None:intergenic 30.0%
GAACATAAATAGGCTCAAAT+TGG + chr4_1:2249153-2249172 Msa0529070:intron 30.0%
TAAACACCAGATACCATATT+GGG + chr4_1:2249847-2249866 Msa0529070:intron 30.0%
GTGACAACTCTTAACAAAAT+AGG + chr4_1:2249957-2249976 Msa0529070:intron 30.0%
CTCTTAACAAAATAGGAAAG+AGG + chr4_1:2249964-2249983 Msa0529070:intron 30.0%
TGTATTAGAGTAGTTATACC+TGG - chr4_1:2250066-2250085 None:intergenic 30.0%
GTATAACTACTCTAATACAC+TGG + chr4_1:2250067-2250086 Msa0529070:intron 30.0%
TGCTGTGATAAAGAATGATA+TGG + chr4_1:2250170-2250189 Msa0529070:intron 30.0%
TAGTCAAAGTAGAAGAAAGA+TGG + chr4_1:2250199-2250218 Msa0529070:intron 30.0%
AATGATTCAGAACTTTGACA+AGG - chr4_1:2250265-2250284 None:intergenic 30.0%
!! TCAAAGTTCTGAATCATTCA+TGG + chr4_1:2250267-2250286 Msa0529070:intron 30.0%
!! CAAAGTTCTGAATCATTCAT+GGG + chr4_1:2250268-2250287 Msa0529070:intron 30.0%
! TAGTGTTGTTAAATGTGCTT+TGG - chr4_1:2250388-2250407 None:intergenic 30.0%
! ATTATTTAGGGAGTATGTGA+AGG - chr4_1:2250970-2250989 None:intergenic 30.0%
TAAACAACTTCTTCCAAAAG+AGG - chr4_1:2251335-2251354 None:intergenic 30.0%
TTGGAAGAAGTTGTTTATAG+AGG + chr4_1:2251338-2251357 Msa0529070:CDS 30.0%
TTTGTACAACTGTTCATCAT+TGG + chr4_1:2251458-2251477 Msa0529070:CDS 30.0%
TTGTACAACTGTTCATCATT+GGG + chr4_1:2251459-2251478 Msa0529070:CDS 30.0%
AATTTCCCACTCAACTTGAT+AGG + chr4_1:2246234-2246253 Msa0529070:CDS 35.0%
! CTTGTTCTTTCCTTTTGCAA+TGG - chr4_1:2246328-2246347 None:intergenic 35.0%
! CTTCCTTTTACTCAGTGTTA+CGG + chr4_1:2246351-2246370 Msa0529070:CDS 35.0%
! TTCCTTTTACTCAGTGTTAC+GGG + chr4_1:2246352-2246371 Msa0529070:CDS 35.0%
CGGAAATGACCTATATTACA+GGG - chr4_1:2246589-2246608 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr4_1:2246587-2246606 Msa0529070:intron 35.0%
CTGTAATATAGGTCATTTCC+GGG + chr4_1:2246588-2246607 Msa0529070:intron 35.0%
! ATATTTTACAGGGGTAAACC+CGG - chr4_1:2246609-2246628 None:intergenic 35.0%
! GTGTTTTACCCCTGTAATAT+AGG - chr4_1:2246826-2246845 None:intergenic 35.0%
! GTCTCTTTTGCTAATCAGTT+TGG - chr4_1:2246870-2246889 None:intergenic 35.0%
AACAAACAGCATGAGAGAAA+TGG + chr4_1:2246895-2246914 Msa0529070:intron 35.0%
TTTGAGTCCATGAATATGGA+AGG - chr4_1:2247000-2247019 None:intergenic 35.0%
ACACCTTAAGTGGGAATAAA+TGG + chr4_1:2247120-2247139 Msa0529070:intron 35.0%
CACCTTAAGTGGGAATAAAT+GGG + chr4_1:2247121-2247140 Msa0529070:intron 35.0%
TTCCCATTTATTCCCACTTA+AGG - chr4_1:2247126-2247145 None:intergenic 35.0%
GGGAATAAATGGGAAATATG+AGG + chr4_1:2247131-2247150 Msa0529070:intron 35.0%
ATGTTGCAAATATAACAGGC+TGG + chr4_1:2247375-2247394 Msa0529070:intron 35.0%
AATTATTGAGTGACAGGAAC+TGG + chr4_1:2247707-2247726 Msa0529070:CDS 35.0%
! ATTTGGGTTTATTGCTCTTC+TGG + chr4_1:2247750-2247769 Msa0529070:CDS 35.0%
!! TGACAGATTACTTGGCTTTA+AGG + chr4_1:2247795-2247814 Msa0529070:CDS 35.0%
!!! CTACTAGGTGTTTTAGAAGT+GGG + chr4_1:2247926-2247945 Msa0529070:intron 35.0%
CTATAATTGCCGAACTTTCT+TGG + chr4_1:2248103-2248122 Msa0529070:intron 35.0%
ACCATTCTACCAAGAAAGTT+CGG - chr4_1:2248115-2248134 None:intergenic 35.0%
AGAATGGTACATCAGTTCAT+AGG + chr4_1:2248127-2248146 Msa0529070:intron 35.0%
!! TGTTAACTTTAGGGTGTGTT+TGG + chr4_1:2248163-2248182 Msa0529070:intron 35.0%
TGTGTTTGGATTGAGGATTT+AGG + chr4_1:2248177-2248196 Msa0529070:intron 35.0%
TTTGGATTGAGGATTTAGGA+GGG + chr4_1:2248181-2248200 Msa0529070:intron 35.0%
! TAAATCCTTAAGGGTGTGTT+TGG - chr4_1:2248399-2248418 None:intergenic 35.0%
AACACACCCTTAAGGATTTA+TGG + chr4_1:2248399-2248418 Msa0529070:intron 35.0%
CACACTCCATAAATCCTTAA+GGG - chr4_1:2248408-2248427 None:intergenic 35.0%
CTTAAGGATTTATGGAGTGT+GGG + chr4_1:2248407-2248426 Msa0529070:intron 35.0%
!! CAAAAGGTTTAAGTTGGATG+TGG + chr4_1:2248473-2248492 Msa0529070:intron 35.0%
GTATAAGTGAGAAAACTGTG+AGG + chr4_1:2248495-2248514 Msa0529070:intron 35.0%
ACAAAGCTCTTAGTTGTGAT+AGG + chr4_1:2248544-2248563 Msa0529070:intron 35.0%
TGTAAGAAAGATTCCTTGGT+TGG + chr4_1:2248605-2248624 Msa0529070:intron 35.0%
AATTGCATGTAAACCAACCA+AGG - chr4_1:2248621-2248640 None:intergenic 35.0%
TTGAAGAAGAATGTTCAGAC+TGG + chr4_1:2248721-2248740 Msa0529070:intron 35.0%
GTGTATGACAGTTGAGAAAA+TGG + chr4_1:2248750-2248769 Msa0529070:intron 35.0%
TTCTTTACCTTTCCAAGTCA+AGG + chr4_1:2248786-2248805 Msa0529070:intron 35.0%
TCTTTACCTTTCCAAGTCAA+GGG + chr4_1:2248787-2248806 Msa0529070:intron 35.0%
TCGATTTACGTGTGTATGTT+TGG + chr4_1:2248835-2248854 Msa0529070:intron 35.0%
!!! ACTGGTTTTGAATGAACAAG+GGG + chr4_1:2248874-2248893 Msa0529070:intron 35.0%
ATAACTGAAGCAAACTGTTG+TGG + chr4_1:2249013-2249032 Msa0529070:intron 35.0%
ATTGAGACAGATATGAACCA+GGG + chr4_1:2249102-2249121 Msa0529070:intron 35.0%
CAATTCAAATGAGGTCATGA+TGG - chr4_1:2249263-2249282 None:intergenic 35.0%
CATCATGACCTCATTTGAAT+TGG + chr4_1:2249261-2249280 Msa0529070:intron 35.0%
!! GAGTAAGAAAGATTAGCTTG+AGG + chr4_1:2249325-2249344 Msa0529070:intron 35.0%
TTCTCTCATTAGTTGCTAGT+TGG - chr4_1:2249512-2249531 None:intergenic 35.0%
CATTTGAATGCGATCTTTGA+AGG - chr4_1:2249562-2249581 None:intergenic 35.0%
TTATGCATCTTCACTTACGT+TGG + chr4_1:2249696-2249715 Msa0529070:intron 35.0%
TATGCATCTTCACTTACGTT+GGG + chr4_1:2249697-2249716 Msa0529070:intron 35.0%
! ATCATAACCTGAAAAGTGTG+TGG + chr4_1:2249760-2249779 Msa0529070:intron 35.0%
TTCTACAGAAGTCATTCCTA+AGG + chr4_1:2249817-2249836 Msa0529070:intron 35.0%
!! TGGTGTTTAGTTTGATCCTT+AGG - chr4_1:2249836-2249855 None:intergenic 35.0%
CTAAACACCAGATACCATAT+TGG + chr4_1:2249846-2249865 Msa0529070:intron 35.0%
AGATATCCCAATATGGTATC+TGG - chr4_1:2249856-2249875 None:intergenic 35.0%
AGATACCATATTGGGATATC+TGG + chr4_1:2249855-2249874 Msa0529070:intron 35.0%
ACTGAAAGCTCTCAATGATT+TGG + chr4_1:2249884-2249903 Msa0529070:intron 35.0%
AAATAAATGAAGGGATTGCC+AGG + chr4_1:2250045-2250064 Msa0529070:intron 35.0%
TAATACACTGGCATGCAATT+AGG + chr4_1:2250079-2250098 Msa0529070:intron 35.0%
!!! TGTTGGACGTTAGTTTTCTT+AGG - chr4_1:2250883-2250902 None:intergenic 35.0%
AGCATTATAAGTTTCATCCC+TGG + chr4_1:2251012-2251031 Msa0529070:intron 35.0%
ATAAGTTTCATCCCTGGATA+CGG + chr4_1:2251018-2251037 Msa0529070:intron 35.0%
! TTTTATTAGGACCGTATCCA+GGG - chr4_1:2251032-2251051 None:intergenic 35.0%
TGTTAGCAATCCAACATTGA+AGG + chr4_1:2251247-2251266 Msa0529070:CDS 35.0%
TTGAGATATCACTGTTTAGG+AGG - chr4_1:2251277-2251296 None:intergenic 35.0%
CTCTTGAGATATCACTGTTT+AGG - chr4_1:2251280-2251299 None:intergenic 35.0%
!! ACCAACCTATCAAGTTGAGT+GGG - chr4_1:2246242-2246261 None:intergenic 40.0%
!! TACCAACCTATCAAGTTGAG+TGG - chr4_1:2246243-2246262 None:intergenic 40.0%
TTCCCGTAACACTGAGTAAA+AGG - chr4_1:2246357-2246376 None:intergenic 40.0%
AGAATCCACCAAAACTGAGA+GGG - chr4_1:2246448-2246467 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG - chr4_1:2246590-2246609 None:intergenic 40.0%
! TTTTCCAGAACACCCCTAAT+AGG - chr4_1:2246741-2246760 None:intergenic 40.0%
CATGAGAGAAATGGTTGAAG+AGG + chr4_1:2246904-2246923 Msa0529070:intron 40.0%
GTTCTTCTAAATCTGGTCAG+TGG + chr4_1:2247079-2247098 Msa0529070:intron 40.0%
ATAGACTCACACACCTTAAG+TGG + chr4_1:2247110-2247129 Msa0529070:intron 40.0%
TAGACTCACACACCTTAAGT+GGG + chr4_1:2247111-2247130 Msa0529070:intron 40.0%
AAGACTGCTTACAGTAGATG+TGG - chr4_1:2247355-2247374 None:intergenic 40.0%
GCAGTTCTGTAAGGTTGAAT+TGG + chr4_1:2247414-2247433 Msa0529070:intron 40.0%
TCTGGTTGTATTGAAGTCCA+CGG + chr4_1:2247642-2247661 Msa0529070:CDS 40.0%
TTTATACTGTGGTTTAGCCG+TGG - chr4_1:2247662-2247681 None:intergenic 40.0%
! TGGTTTTTGTCATCAGCTCT+GGG + chr4_1:2247727-2247746 Msa0529070:CDS 40.0%
! CTACTTGCTGACAGATTACT+TGG + chr4_1:2247787-2247806 Msa0529070:CDS 40.0%
!!! GCTACTAGGTGTTTTAGAAG+TGG + chr4_1:2247925-2247944 Msa0529070:intron 40.0%
AGAAGAACAGCTTATCAGTC+TGG + chr4_1:2248025-2248044 Msa0529070:intron 40.0%
GAAGAACAGCTTATCAGTCT+GGG + chr4_1:2248026-2248045 Msa0529070:intron 40.0%
!! CAAAGAAGTATTTACCCCCA+TGG - chr4_1:2248059-2248078 None:intergenic 40.0%
GGGGGTAAATACTTCTTTGA+TGG + chr4_1:2248060-2248079 Msa0529070:intron 40.0%
GTTCGGCAATTATAGCAATG+AGG - chr4_1:2248098-2248117 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr4_1:2248170-2248189 Msa0529070:intron 40.0%
GTTTGGATTGAGGATTTAGG+AGG + chr4_1:2248180-2248199 Msa0529070:intron 40.0%
TTGGATTGAGGATTTAGGAG+GGG + chr4_1:2248182-2248201 Msa0529070:intron 40.0%
CCACACTCCATAAATCCTTA+AGG - chr4_1:2248409-2248428 None:intergenic 40.0%
CCTTAAGGATTTATGGAGTG+TGG + chr4_1:2248406-2248425 Msa0529070:intron 40.0%
GGGAGACAAAAGGTTTAAGT+TGG + chr4_1:2248467-2248486 Msa0529070:intron 40.0%
CTTAGTTGTGATAGGCTAAG+AGG + chr4_1:2248552-2248571 Msa0529070:intron 40.0%
! AGGAGATCAGTGTAGTTTGT+AGG + chr4_1:2248572-2248591 Msa0529070:intron 40.0%
! GGAGATCAGTGTAGTTTGTA+GGG + chr4_1:2248573-2248592 Msa0529070:intron 40.0%
! ACATTTAGCTTCCCTTGACT+TGG - chr4_1:2248801-2248820 None:intergenic 40.0%
GGATGAGCATTTGTCAAAAC+TGG + chr4_1:2248856-2248875 Msa0529070:intron 40.0%
ATGTGGTGACAACATAACGT+AGG + chr4_1:2248925-2248944 Msa0529070:intron 40.0%
TGTTACTCTACGTTTCAGTC+TGG - chr4_1:2249058-2249077 None:intergenic 40.0%
CTGGTTCATATCTGTCTCAA+TGG - chr4_1:2249103-2249122 None:intergenic 40.0%
CATTGAGACAGATATGAACC+AGG + chr4_1:2249101-2249120 Msa0529070:intron 40.0%
TTGAGACAGATATGAACCAG+GGG + chr4_1:2249103-2249122 Msa0529070:intron 40.0%
TGTCAGGTTTGTAAAGAGTC+TGG - chr4_1:2249203-2249222 None:intergenic 40.0%
CGCATTCAAATGCTCTTTCA+TGG + chr4_1:2249570-2249589 Msa0529070:intron 40.0%
GAGTTTCTTCTTTGGATCCA+AGG - chr4_1:2249633-2249652 None:intergenic 40.0%
GATCCAAAGAAGAAACTCAG+AGG + chr4_1:2249635-2249654 Msa0529070:intron 40.0%
ATGCATCTTCACTTACGTTG+GGG + chr4_1:2249698-2249717 Msa0529070:intron 40.0%
! TTCTTCTTTTACCACTGCTC+TGG - chr4_1:2249731-2249750 None:intergenic 40.0%
! ATAACCTGAAAAGTGTGTGG+TGG + chr4_1:2249763-2249782 Msa0529070:intron 40.0%
TCACTCCAGATATCCCAATA+TGG - chr4_1:2249863-2249882 None:intergenic 40.0%
AGGAAAGAGGAACTAACTGA+AGG + chr4_1:2249977-2249996 Msa0529070:intron 40.0%
TCAAAGTCAAAGGAAGCTCA+AGG + chr4_1:2250236-2250255 Msa0529070:intron 40.0%
! ACTAGGTAGGCTTTTAAGCA+AGG - chr4_1:2250299-2250318 None:intergenic 40.0%
AAAGAGTCGAAGCTTCTTCA+AGG + chr4_1:2250348-2250367 Msa0529070:intron 40.0%
AAGAGTCGAAGCTTCTTCAA+GGG + chr4_1:2250349-2250368 Msa0529070:intron 40.0%
ATGTGCTTTGGTAAAGCCTA+GGG - chr4_1:2250376-2250395 None:intergenic 40.0%
AATGTGCTTTGGTAAAGCCT+AGG - chr4_1:2250377-2250396 None:intergenic 40.0%
TCGCTAGCTGTAGCAATATT+GGG - chr4_1:2250456-2250475 None:intergenic 40.0%
TTCGCTAGCTGTAGCAATAT+TGG - chr4_1:2250457-2250476 None:intergenic 40.0%
TAGCAGCTCCTTACAACAAA+AGG - chr4_1:2250603-2250622 None:intergenic 40.0%
GAAGGATCATGAGAGTTTGT+TGG - chr4_1:2250900-2250919 None:intergenic 40.0%
ATGAGAGTGAGAGTTTGTGA+AGG - chr4_1:2250918-2250937 None:intergenic 40.0%
ATGAGAGTGAGAGTTTGTGA+AGG - chr4_1:2250918-2250937 None:intergenic 40.0%
!! GTTTTATTAGGACCGTATCC+AGG - chr4_1:2251033-2251052 None:intergenic 40.0%
AATAACTACACACAGTCACG+AGG - chr4_1:2251096-2251115 None:intergenic 40.0%
CGTGACTGTGTGTAGTTATT+CGG + chr4_1:2251096-2251115 Msa0529070:intron 40.0%
TTCAGTGCAATTCACTTCTC+TGG + chr4_1:2251428-2251447 Msa0529070:CDS 40.0%
CAAATTTCCAGTCCAGCAAT+AGG - chr4_1:2251501-2251520 None:intergenic 40.0%
TCCCACTCAACTTGATAGGT+TGG + chr4_1:2246238-2246257 Msa0529070:CDS 45.0%
ACTCGAAATTGAGGTCCAAG+AGG + chr4_1:2246300-2246319 Msa0529070:CDS 45.0%
TTACTCAGTGTTACGGGAAG+AGG + chr4_1:2246358-2246377 Msa0529070:CDS 45.0%
! CTTCACATCCCTCTCAGTTT+TGG + chr4_1:2246437-2246456 Msa0529070:intron 45.0%
GAGAATCCACCAAAACTGAG+AGG - chr4_1:2246449-2246468 None:intergenic 45.0%
TGAGTTTGTGGGTGAAGAAG+AGG - chr4_1:2246500-2246519 None:intergenic 45.0%
TCTTCTTCACCCACAAACTC+AGG + chr4_1:2246499-2246518 Msa0529070:intron 45.0%
GTGACGTTACCTGAGTTTGT+GGG - chr4_1:2246511-2246530 None:intergenic 45.0%
!! ATGACCTATTAGGGGTGTTC+TGG + chr4_1:2246734-2246753 Msa0529070:intron 45.0%
GACGTCACCTTCCATATTCA+TGG + chr4_1:2246990-2247009 Msa0529070:intron 45.0%
TCTTGAGTTTAATGCGGCTC+TGG + chr4_1:2247624-2247643 Msa0529070:CDS 45.0%
!! CTGGTTTTTGTCATCAGCTC+TGG + chr4_1:2247726-2247745 Msa0529070:CDS 45.0%
!! TTGTCATCAGCTCTGGGATT+TGG + chr4_1:2247733-2247752 Msa0529070:CDS 45.0%
!! TGTCATCAGCTCTGGGATTT+GGG + chr4_1:2247734-2247753 Msa0529070:CDS 45.0%
GCCGAACTTTCTTGGTAGAA+TGG + chr4_1:2248111-2248130 Msa0529070:intron 45.0%
ATTGAGGATTTAGGAGGGGA+AGG + chr4_1:2248186-2248205 Msa0529070:intron 45.0%
TTGAGGATTTAGGAGGGGAA+GGG + chr4_1:2248187-2248206 Msa0529070:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG - chr4_1:2248381-2248400 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr4_1:2248385-2248404 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG - chr4_1:2248391-2248410 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG - chr4_1:2248392-2248411 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG + chr4_1:2248391-2248410 Msa0529070:intron 45.0%
! TCCTTAAGGGTGTGTTTGGA+TGG - chr4_1:2248395-2248414 None:intergenic 45.0%
CGATATACGAGGGAGACAAA+AGG + chr4_1:2248457-2248476 Msa0529070:intron 45.0%
GAGAAAACTGTGAGGTTGAC+TGG + chr4_1:2248503-2248522 Msa0529070:intron 45.0%
AAAACTGTGAGGTTGACTGG+CGG + chr4_1:2248506-2248525 Msa0529070:intron 45.0%
! ACTATCTAGGATGGCATGCT+TGG + chr4_1:2248676-2248695 Msa0529070:intron 45.0%
!! TAGCTTCCCTTGACTTGGAA+AGG - chr4_1:2248796-2248815 None:intergenic 45.0%
GACAACATAACGTAGGCATG+AGG + chr4_1:2248932-2248951 Msa0529070:intron 45.0%
AACATAACGTAGGCATGAGG+TGG + chr4_1:2248935-2248954 Msa0529070:intron 45.0%
ACTGAAGCAAACTGTTGTGG+AGG + chr4_1:2249016-2249035 Msa0529070:intron 45.0%
AGAGTAACATTTCTTCCCCG+AGG + chr4_1:2249069-2249088 Msa0529070:intron 45.0%
GAGTAACATTTCTTCCCCGA+GGG + chr4_1:2249070-2249089 Msa0529070:intron 45.0%
AGTAACATTTCTTCCCCGAG+GGG + chr4_1:2249071-2249090 Msa0529070:intron 45.0%
! TCTCAATGGTTTTCTCCCCT+CGG - chr4_1:2249089-2249108 None:intergenic 45.0%
! TTGCAGCTTTAGTGAGTGTC+AGG - chr4_1:2249219-2249238 None:intergenic 45.0%
TGACACTCACTAAAGCTGCA+AGG + chr4_1:2249218-2249237 Msa0529070:intron 45.0%
CACTAAAGCTGCAAGGTCAA+CGG + chr4_1:2249225-2249244 Msa0529070:intron 45.0%
TGATCGGGCCAATTCAAATG+AGG - chr4_1:2249272-2249291 None:intergenic 45.0%
TGCTGACATACTCTGGTGAT+CGG - chr4_1:2249288-2249307 None:intergenic 45.0%
AATCCTCTGCTGACATACTC+TGG - chr4_1:2249295-2249314 None:intergenic 45.0%
TGGATTCTCTCGCGATAGAT+GGG - chr4_1:2249492-2249511 None:intergenic 45.0%
TTGGATTCTCTCGCGATAGA+TGG - chr4_1:2249493-2249512 None:intergenic 45.0%
! GTTGACTCTCTCAACATGGT+TGG - chr4_1:2249607-2249626 None:intergenic 45.0%
!! GTTCGTTGACTCTCTCAACA+TGG - chr4_1:2249611-2249630 None:intergenic 45.0%
TTGAGAGAGTCAACGAACCT+TGG + chr4_1:2249613-2249632 Msa0529070:intron 45.0%
GTGCCTCTGAGTTTCTTCTT+TGG - chr4_1:2249641-2249660 None:intergenic 45.0%
GTATGCTTCCTAGTGTTCAG+TGG + chr4_1:2250147-2250166 Msa0529070:intron 45.0%
! GCTTTTAGTGGCTACTAGGT+AGG - chr4_1:2250312-2250331 None:intergenic 45.0%
! CCATGCTTTTAGTGGCTACT+AGG - chr4_1:2250316-2250335 None:intergenic 45.0%
CCTAGTAGCCACTAAAAGCA+TGG + chr4_1:2250313-2250332 Msa0529070:intron 45.0%
! ACGGGAAACCATGCTTTTAG+TGG - chr4_1:2250324-2250343 None:intergenic 45.0%
AAGCTTCGACTCTTTCGCTA+CGG - chr4_1:2250343-2250362 None:intergenic 45.0%
AACTCGATGCTTGTGCAGAA+AGG - chr4_1:2250513-2250532 None:intergenic 45.0%
CAGTCTGCAGCAATGCAATA+TGG - chr4_1:2251229-2251248 None:intergenic 45.0%
AGGAGGATCTCCTTCAATGT+TGG - chr4_1:2251260-2251279 None:intergenic 45.0%
! CTGCATTGTCACTCCTCTTT+TGG + chr4_1:2251319-2251338 Msa0529070:CDS 45.0%
!! TACAGCTTGTTGCCACTTCA+TGG - chr4_1:2251390-2251409 None:intergenic 45.0%
TTCATCATTGGGTGTGTCCT+TGG + chr4_1:2251470-2251489 Msa0529070:CDS 45.0%
!!! ATAAAAAAAAATATTTTACA+GGG - chr4_1:2246619-2246638 None:intergenic 5.0%
!!! AATAAAAAAAAATATTTTAC+AGG - chr4_1:2246620-2246639 None:intergenic 5.0%
!!! TATTTTTTTTACAAAAATTT+TGG + chr4_1:2246704-2246723 Msa0529070:intron 5.0%
!! ATAAAACAATATATTATTTA+GGG - chr4_1:2250982-2251001 None:intergenic 5.0%
!! AATAAAACAATATATTATTT+AGG - chr4_1:2250983-2251002 None:intergenic 5.0%
!!! AAATAATATATTGTTTTATT+TGG + chr4_1:2250983-2251002 Msa0529070:intron 5.0%
! CCTTTTGCAATGGCACCTCT+TGG - chr4_1:2246318-2246337 None:intergenic 50.0%
!! CCAAGAGGTGCCATTGCAAA+AGG + chr4_1:2246315-2246334 Msa0529070:CDS 50.0%
TACGGGAAGAGGATAGTCCA+TGG + chr4_1:2246369-2246388 Msa0529070:CDS 50.0%
CATACATCACCACTCTGCCA+TGG - chr4_1:2246389-2246408 None:intergenic 50.0%
! CATGGCAGAGTGGTGATGTA+TGG + chr4_1:2246387-2246406 Msa0529070:CDS 50.0%
!! CACATCCCTCTCAGTTTTGG+TGG + chr4_1:2246440-2246459 Msa0529070:intron 50.0%
TCCTGTGAAGAACGCAACGA+CGG - chr4_1:2246471-2246490 None:intergenic 50.0%
GGTGACGTTACCTGAGTTTG+TGG - chr4_1:2246512-2246531 None:intergenic 50.0%
GACACTCATATGCAGAGGTC+GGG - chr4_1:2247164-2247183 None:intergenic 50.0%
GGACACTCATATGCAGAGGT+CGG - chr4_1:2247165-2247184 None:intergenic 50.0%
GCAAGGACACTCATATGCAG+AGG - chr4_1:2247169-2247188 None:intergenic 50.0%
TTTGGTCTAAAGGCGAGAGC+AGG - chr4_1:2247989-2248008 None:intergenic 50.0%
! TCAGTCTGGGATGCAAACCA+TGG + chr4_1:2248039-2248058 Msa0529070:intron 50.0%
! CAGTCTGGGATGCAAACCAT+GGG + chr4_1:2248040-2248059 Msa0529070:intron 50.0%
! AGTCTGGGATGCAAACCATG+GGG + chr4_1:2248041-2248060 Msa0529070:intron 50.0%
TTGGATGGAGGGTTTAGGAG+GGG - chr4_1:2248380-2248399 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr4_1:2248382-2248401 None:intergenic 50.0%
GACTGGGAGTTGCACTATCT+AGG + chr4_1:2248663-2248682 Msa0529070:intron 50.0%
GGGAGTTGCACTATCTAGGA+TGG + chr4_1:2248667-2248686 Msa0529070:intron 50.0%
GGTTGAGCTAGAGCATGATG+TGG + chr4_1:2248908-2248927 Msa0529070:intron 50.0%
GCATGAGGTGGAGTTTGATG+CGG + chr4_1:2248947-2248966 Msa0529070:intron 50.0%
AAGCTGTGGAACAGCCTGAA+AGG + chr4_1:2248979-2248998 Msa0529070:intron 50.0%
TATGCCTTCACCAGCCTTTC+AGG - chr4_1:2248996-2249015 None:intergenic 50.0%
GAAGCAAACTGTTGTGGAGG+TGG + chr4_1:2249019-2249038 Msa0529070:intron 50.0%
TGTGGAGGTGGATGAAACTG+TGG + chr4_1:2249031-2249050 Msa0529070:intron 50.0%
! TCAATGGTTTTCTCCCCTCG+GGG - chr4_1:2249087-2249106 None:intergenic 50.0%
! CTCAATGGTTTTCTCCCCTC+GGG - chr4_1:2249088-2249107 None:intergenic 50.0%
GACAGATATGAACCAGGGGA+AGG + chr4_1:2249107-2249126 Msa0529070:intron 50.0%
AGATATGAACCAGGGGAAGG+AGG + chr4_1:2249110-2249129 Msa0529070:intron 50.0%
TGAGGTCATGATGGCTGCTA+TGG - chr4_1:2249254-2249273 None:intergenic 50.0%
GCTGACATACTCTGGTGATC+GGG - chr4_1:2249287-2249306 None:intergenic 50.0%
TCACCAGAGTATGTCAGCAG+AGG + chr4_1:2249289-2249308 Msa0529070:intron 50.0%
GTCTCTGTTACAGAGCTTGC+TGG + chr4_1:2249358-2249377 Msa0529070:intron 50.0%
GGATTCTCTCGCGATAGATG+GGG - chr4_1:2249491-2249510 None:intergenic 50.0%
! TCGACCACCACACACTTTTC+AGG - chr4_1:2249770-2249789 None:intergenic 50.0%
! TGAAAAGTGTGTGGTGGTCG+AGG + chr4_1:2249769-2249788 Msa0529070:intron 50.0%
AGCTGCTGCACTAGTCAAAG+TGG + chr4_1:2250120-2250139 Msa0529070:intron 50.0%
CTGCACTAGTCAAAGTGGCA+TGG + chr4_1:2250125-2250144 Msa0529070:intron 50.0%
TCACAGCACCACTGAACACT+AGG - chr4_1:2250158-2250177 None:intergenic 50.0%
AGCTTCGACTCTTTCGCTAC+GGG - chr4_1:2250342-2250361 None:intergenic 50.0%
AAGCTTCTTCAAGGGACCCT+AGG + chr4_1:2250357-2250376 Msa0529070:intron 50.0%
ACTACACACAGTCACGAGGT+CGG - chr4_1:2251092-2251111 None:intergenic 50.0%
CACTTTCCTCCACCATGAAG+TGG + chr4_1:2251375-2251394 Msa0529070:CDS 50.0%
! TTGTTGCCACTTCATGGTGG+AGG - chr4_1:2251384-2251403 None:intergenic 50.0%
!! AGCTTGTTGCCACTTCATGG+TGG - chr4_1:2251387-2251406 None:intergenic 50.0%
TCCTTGGATGCTCCTATTGC+TGG + chr4_1:2251486-2251505 Msa0529070:CDS 50.0%
!! TCCAGCAATAGGAGCATCCA+AGG - chr4_1:2251490-2251509 None:intergenic 50.0%
GAGGATAGTCCATGGCAGAG+TGG + chr4_1:2246377-2246396 Msa0529070:CDS 55.0%
TCCGTCGTTGCGTTCTTCAC+AGG + chr4_1:2246467-2246486 Msa0529070:intron 55.0%
! GTCTGGGATGCAAACCATGG+GGG + chr4_1:2248042-2248061 Msa0529070:intron 55.0%
AGGATTTAGGAGGGGAAGGG+AGG + chr4_1:2248190-2248209 Msa0529070:intron 55.0%
GGATTTAGGAGGGGAAGGGA+GGG + chr4_1:2248191-2248210 Msa0529070:intron 55.0%
GATTTAGGAGGGGAAGGGAG+GGG + chr4_1:2248192-2248211 Msa0529070:intron 55.0%
ATGGAGGGTTTAGGAGGGGA+GGG - chr4_1:2248376-2248395 None:intergenic 55.0%
GGTTGACTGGCGGAGGATAT+CGG + chr4_1:2248516-2248535 Msa0529070:intron 55.0%
GTTGACTGGCGGAGGATATC+GGG + chr4_1:2248517-2248536 Msa0529070:intron 55.0%
GAACAAGGGGACGCAAGCAT+AGG + chr4_1:2248887-2248906 Msa0529070:intron 55.0%
TGAGGTGGAGTTTGATGCGG+TGG + chr4_1:2248950-2248969 Msa0529070:intron 55.0%
TGCGGTGGTAGCATAAGCTG+TGG + chr4_1:2248965-2248984 Msa0529070:intron 55.0%
TGTGGAACAGCCTGAAAGGC+TGG + chr4_1:2248983-2249002 Msa0529070:intron 55.0%
ACAGCCTGAAAGGCTGGTGA+AGG + chr4_1:2248989-2249008 Msa0529070:intron 55.0%
TATGAACCAGGGGAAGGAGG+TGG + chr4_1:2249113-2249132 Msa0529070:intron 55.0%
GGTCATGATGGCTGCTATGG+TGG - chr4_1:2249251-2249270 None:intergenic 55.0%
CGAACTCTCTGGTGAAGTGC+AGG + chr4_1:2249381-2249400 Msa0529070:intron 55.0%
GGGGAAGATTACCAGAGCAG+TGG + chr4_1:2249717-2249736 Msa0529070:intron 55.0%
AAAGTGTGTGGTGGTCGAGG+TGG + chr4_1:2249772-2249791 Msa0529070:intron 55.0%
GGATGCTCCTATTGCTGGAC+TGG + chr4_1:2251491-2251510 Msa0529070:CDS 55.0%
GATGGAGGGTTTAGGAGGGG+AGG - chr4_1:2248377-2248396 None:intergenic 60.0%
ACTGTGAGGTTGACTGGCGG+AGG + chr4_1:2248509-2248528 Msa0529070:intron 60.0%
ACTGGCGGAGGATATCGGGA+TGG + chr4_1:2248521-2248540 Msa0529070:intron 60.0%
GAAGGAGGTGGAGCCTAGAG+AGG + chr4_1:2249125-2249144 Msa0529070:intron 60.0%
!! GAGCTTGCTGGCGAACTCTC+TGG + chr4_1:2249370-2249389 Msa0529070:intron 60.0%
CACACAGTCACGAGGTCGGT+TGG - chr4_1:2251088-2251107 None:intergenic 60.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr4_1:2248195-2248214 Msa0529070:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr4_1:2248196-2248215 Msa0529070:intron 65.0%
TAGGCTCCACCTCCTTCCCC+TGG - chr4_1:2249122-2249141 None:intergenic 65.0%
TGTGGTGGTCGAGGTGGTGC+TGG + chr4_1:2249778-2249797 Msa0529070:intron 65.0%
! GGTGGTCGAGGTGGTGCTGG+TGG + chr4_1:2249781-2249800 Msa0529070:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 2246197 2251602 2246197 ID=Msa0529070;Name=Msa0529070
chr4_1 mRNA 2246197 2251602 2246197 ID=Msa0529070-mRNA-1;Parent=Msa0529070;Name=Msa0529070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|0|0.66|3|16|260
chr4_1 exon 2246197 2246418 2246197 ID=Msa0529070-mRNA-1:exon:654;Parent=Msa0529070-mRNA-1
chr4_1 exon 2247598 2247816 2247598 ID=Msa0529070-mRNA-1:exon:655;Parent=Msa0529070-mRNA-1
chr4_1 exon 2251245 2251602 2251245 ID=Msa0529070-mRNA-1:exon:656;Parent=Msa0529070-mRNA-1
chr4_1 CDS 2246197 2246418 2246197 ID=Msa0529070-mRNA-1:cds;Parent=Msa0529070-mRNA-1
chr4_1 CDS 2247598 2247816 2247598 ID=Msa0529070-mRNA-1:cds;Parent=Msa0529070-mRNA-1
chr4_1 CDS 2251245 2251586 2251245 ID=Msa0529070-mRNA-1:cds;Parent=Msa0529070-mRNA-1
chr4_1 three_prime_UTR 2251587 2251602 2251587 ID=Msa0529070-mRNA-1:three_prime_utr;Parent=Msa0529070-mRNA-1
Gene Sequence

>Msa0529070

ATGTCAGTAACGGGGTGGTTACAAGCTGTTTGTGTTAAATTTCCCACTCAACTTGATAGGTTGGTAGTGAAACACTTTTACAGCCAAAAAAACACAAATAGAAACTCGAAATTGAGGTCCAAGAGGTGCCATTGCAAAAGGAAAGAACAAGACACTTCCTTTTACTCAGTGTTACGGGAAGAGGATAGTCCATGGCAGAGTGGTGATGTATGGACCAATCTTGCCATATCTCTTCTTACCATTCAAGTTCTTGAGTTTAATGCGGCTCTGGTTGTATTGAAGTCCACGGCTAAACCACAGTATAAATTTTCAAGTTTCTTCGAAAATAACAAATTATTGAGTGACAGGAACTGGTTTTTGTCATCAGCTCTGGGATTTGGGTTTATTGCTCTTCTGGTTTGTCTAACATCACTACTTGCTGACAGATTACTTGGCTTTAAGACTGTTAGCAATCCAACATTGAAGGAGATCCTCCTAAACAGTGATATCTCAAGAGTGTGTTGTGTTACTGCTTACTGCATTGTCACTCCTCTTTTGGAAGAAGTTGTTTATAGAGGATTTCTGTTGACATCACTTTCCTCCACCATGAAGTGGCAACAAGCTGTAGTCATAAGCTCTGTTGTATTCAGTGCAATTCACTTCTCTGGTGAAAACTTTGTACAACTGTTCATCATTGGGTGTGTCCTTGGATGCTCCTATTGCTGGACTGGAAATTTGAAGTCTTCCATTGTTATTCATTCTTTGTACAATGCTTTGACCTTATTCATGACTTATTTTTATTAA

Protein sequence

>Msa0529070

MSVTGWLQAVCVKFPTQLDRLVVKHFYSQKNTNRNSKLRSKRCHCKRKEQDTSFYSVLREEDSPWQSGDVWTNLAISLLTIQVLEFNAALVVLKSTAKPQYKFSSFFENNKLLSDRNWFLSSALGFGFIALLVCLTSLLADRLLGFKTVSNPTLKEILLNSDISRVCCVTAYCIVTPLLEEVVYRGFLLTSLSSTMKWQQAVVISSVVFSAIHFSGENFVQLFIIGCVLGCSYCWTGNLKSSIVIHSLYNALTLFMTYFY*