AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0624260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624260 MtrunA17_Chr8g0358961 96.476 227 8 0 1 227 1 227 1.93e-168 462
Msa0624260 MtrunA17_Chr4g0058821 42.222 180 95 4 39 215 23 196 9.23e-35 123
Msa0624260 MtrunA17_Chr8g0368391 36.058 208 119 5 13 215 5 203 1.64e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624260 AT1G17100.1 62.632 190 68 1 35 221 42 231 2.30e-89 263
Msa0624260 AT1G78450.1 47.768 224 104 4 4 222 1 216 9.62e-70 213
Msa0624260 AT1G78460.1 45.455 187 94 3 35 220 40 219 7.55e-52 167

Find 49 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTCAATTTCATTATC+AGG 0.236313 4_3:-2216234 Msa0624260:CDS
AAGCTACTAGAACTGGTTTC+AGG 0.240236 4_3:-2216065 Msa0624260:CDS
TTCTTGTTTGATTTGGAAAA+TGG 0.250380 4_3:-2214663 Msa0624260:CDS
GACTTTATAATTCGTCTGTT+TGG 0.265253 4_3:-2216125 Msa0624260:CDS
GGATTTGCTTGGTTCACTTT+TGG 0.290356 4_3:+2214930 None:intergenic
TAGGCTATTTGATTACATTC+AGG 0.303343 4_3:-2215063 Msa0624260:CDS
GATATGGTTCTTGTTTGATT+TGG 0.325272 4_3:-2214670 Msa0624260:CDS
TGAACATGAAGACCCTTTGC+AGG 0.337320 4_3:+2214903 None:intergenic
AATGTCTTGAATAGGAGAAT+TGG 0.347748 4_3:+2216098 None:intergenic
TATGCAGCAGTTAGACAATT+TGG 0.366995 4_3:-2214864 Msa0624260:CDS
ATTCAAAAGGGGCATTGTAC+TGG 0.369508 4_3:+2214712 None:intergenic
CTTGTTGAAGCTACTAGAAC+TGG 0.386778 4_3:-2216072 Msa0624260:CDS
ACAAATGAAGACTCACAAAA+TGG 0.387846 4_3:+2214969 None:intergenic
AGCTTCTATGACATCATAGT+TGG 0.390370 4_3:+2216167 None:intergenic
TTGCAGGAGGTGGATTTGCT+TGG 0.398401 4_3:+2214919 None:intergenic
ACCCTATTATCATATTCAAA+AGG 0.401311 4_3:+2214699 None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG 0.403479 4_3:+2216090 None:intergenic
CCCTATTATCATATTCAAAA+GGG 0.409363 4_3:+2214700 None:intergenic
AGGCTATTTGATTACATTCA+GGG 0.450840 4_3:-2215062 Msa0624260:CDS
TGAAGACCCTTTGCAGGAGG+TGG 0.452104 4_3:+2214909 None:intergenic
TGAGGAAGCTGCAGCGTTGA+AGG 0.460765 4_3:-2214814 Msa0624260:CDS
AACTATGATGTCATAGAAGC+TGG 0.463929 4_3:-2216165 Msa0624260:CDS
ATAATAGGGTGAATGAGATA+TGG 0.465751 4_3:-2214686 Msa0624260:CDS
GCGTTGAAGGACAGTATTGC+CGG 0.485645 4_3:-2214801 Msa0624260:CDS
GATGTCATAGAAGCTGGAAA+TGG 0.490076 4_3:-2216159 Msa0624260:CDS
AGGGTCTTCATGTTCAAAGA+TGG 0.509198 4_3:-2214896 Msa0624260:CDS
AGCAAATCCACCTCCTGCAA+AGG 0.509519 4_3:-2214916 Msa0624260:CDS
GCAAATCCACCTCCTGCAAA+GGG 0.510194 4_3:-2214915 Msa0624260:CDS
GGACACTCTATGCGTTTGCA+TGG 0.518091 4_3:+2216189 None:intergenic
TGTTGTGCTGGTTACAGCCA+TGG 0.533600 4_3:+2216281 None:intergenic
GGTAAGACTTCAGAGAGAAC+AGG 0.536541 4_3:+2215002 None:intergenic
TTCAAAAGGGGCATTGTACT+GGG 0.538233 4_3:+2214713 None:intergenic
TGAGAGCTTCCATGTTGTGC+TGG 0.538362 4_3:+2216269 None:intergenic
AACTCGAAGCATGCAATCCA+TGG 0.545237 4_3:-2216298 None:intergenic
ATTGAACAAAGCCGTAGAGC+TGG 0.550259 4_3:-2214759 Msa0624260:CDS
GCTTCTATGACATCATAGTT+GGG 0.553146 4_3:+2216168 None:intergenic
TCACAAAATGGTCCATCACT+TGG 0.562399 4_3:+2214981 None:intergenic
TCTGAAGTCTTACCAAGTGA+TGG 0.564116 4_3:-2214993 Msa0624260:CDS
CTGAAGCATGACCAGCTCTA+CGG 0.568630 4_3:+2214748 None:intergenic
GCAGCAGTTAGACAATTTGG+TGG 0.569529 4_3:-2214861 Msa0624260:CDS
GGCTATTTGATTACATTCAG+GGG 0.574090 4_3:-2215061 Msa0624260:CDS
TTTGTCAAAGATACAGATGT+TGG 0.582094 4_3:-2214837 Msa0624260:CDS
AGCAGAAGACCACTTAGTAC+CGG 0.588835 4_3:+2214782 None:intergenic
ACAGTATTGCCGGTACTAAG+TGG 0.612734 4_3:-2214791 Msa0624260:CDS
TGGCTGTAACCAGCACAACA+TGG 0.625059 4_3:-2216278 Msa0624260:CDS
CCTATTATCATATTCAAAAG+GGG 0.627523 4_3:+2214701 None:intergenic
CAAAGATACAGATGTTGGTG+AGG 0.634324 4_3:-2214832 Msa0624260:CDS
ACATGAAGACCCTTTGCAGG+AGG 0.641553 4_3:+2214906 None:intergenic
CTACTAGAACTGGTTTCAGG+AGG 0.662955 4_3:-2216062 Msa0624260:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTAAACATCATATTTTT+TGG + chr4_3:2214982-2215001 None:intergenic 15.0%
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2215114-2215133 Msa0624260:intron 15.0%
!! AATGTGAAATGATTTATATT+TGG - chr4_3:2215565-2215584 Msa0624260:intron 15.0%
!!! TTAATCTTTTTCTTTTTCTT+AGG - chr4_3:2215853-2215872 Msa0624260:intron 15.0%
!!! AAGTTAAACATCATATTTTT+TGG + chr4_3:2214982-2215001 None:intergenic 15.0%
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2215114-2215133 Msa0624260:intron 15.0%
!! AATGTGAAATGATTTATATT+TGG - chr4_3:2215565-2215584 Msa0624260:intron 15.0%
!!! TTAATCTTTTTCTTTTTCTT+AGG - chr4_3:2215853-2215872 Msa0624260:intron 15.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2214915-2214934 Msa0624260:CDS 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2215113-2215132 Msa0624260:intron 20.0%
!!! AAATTAATTGTCTCTAGAAT+GGG + chr4_3:2215649-2215668 None:intergenic 20.0%
!!! AAAATTAATTGTCTCTAGAA+TGG + chr4_3:2215650-2215669 None:intergenic 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2214915-2214934 Msa0624260:CDS 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2215113-2215132 Msa0624260:intron 20.0%
!!! AAATTAATTGTCTCTAGAAT+GGG + chr4_3:2215649-2215668 None:intergenic 20.0%
!!! AAAATTAATTGTCTCTAGAA+TGG + chr4_3:2215650-2215669 None:intergenic 20.0%
! CTTATCTCAATTTCATTATC+AGG - chr4_3:2214701-2214720 Msa0624260:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2215209-2215228 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2215364-2215383 None:intergenic 25.0%
!!! ACAATTGATTTTGACATGTT+TGG + chr4_3:2215419-2215438 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2215685-2215704 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2215688-2215707 Msa0624260:intron 25.0%
! TGAACTTAATGATCATTCAT+TGG + chr4_3:2215759-2215778 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2215793-2215812 Msa0624260:intron 25.0%
! AATCAAGTTTAGTAACTCTT+CGG + chr4_3:2215835-2215854 None:intergenic 25.0%
! CCTATTATCATATTCAAAAG+GGG + chr4_3:2216237-2216256 None:intergenic 25.0%
! CCCTATTATCATATTCAAAA+GGG + chr4_3:2216238-2216257 None:intergenic 25.0%
!! CCCTTTTGAATATGATAATA+GGG - chr4_3:2216235-2216254 Msa0624260:CDS 25.0%
! ACCCTATTATCATATTCAAA+AGG + chr4_3:2216239-2216258 None:intergenic 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG - chr4_3:2216272-2216291 Msa0624260:CDS 25.0%
! CTTATCTCAATTTCATTATC+AGG - chr4_3:2214701-2214720 Msa0624260:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2215209-2215228 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2215364-2215383 None:intergenic 25.0%
!!! ACAATTGATTTTGACATGTT+TGG + chr4_3:2215419-2215438 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2215685-2215704 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2215688-2215707 Msa0624260:intron 25.0%
! TGAACTTAATGATCATTCAT+TGG + chr4_3:2215759-2215778 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2215793-2215812 Msa0624260:intron 25.0%
! AATCAAGTTTAGTAACTCTT+CGG + chr4_3:2215835-2215854 None:intergenic 25.0%
! CCTATTATCATATTCAAAAG+GGG + chr4_3:2216237-2216256 None:intergenic 25.0%
! CCCTATTATCATATTCAAAA+GGG + chr4_3:2216238-2216257 None:intergenic 25.0%
!! CCCTTTTGAATATGATAATA+GGG - chr4_3:2216235-2216254 Msa0624260:CDS 25.0%
! ACCCTATTATCATATTCAAA+AGG + chr4_3:2216239-2216258 None:intergenic 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG - chr4_3:2216272-2216291 Msa0624260:CDS 25.0%
GACTTTATAATTCGTCTGTT+TGG - chr4_3:2214810-2214829 Msa0624260:CDS 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2214840-2214859 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2214848-2214867 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2215872-2215891 Msa0624260:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2215873-2215892 Msa0624260:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2215969-2215988 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2216098-2216117 Msa0624260:CDS 30.0%
! CCCCTTTTGAATATGATAAT+AGG - chr4_3:2216234-2216253 Msa0624260:CDS 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2216249-2216268 Msa0624260:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG - chr4_3:2216265-2216284 Msa0624260:CDS 30.0%
GACTTTATAATTCGTCTGTT+TGG - chr4_3:2214810-2214829 Msa0624260:CDS 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2214840-2214859 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2214848-2214867 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2215872-2215891 Msa0624260:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2215873-2215892 Msa0624260:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2215969-2215988 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2216098-2216117 Msa0624260:CDS 30.0%
! CCCCTTTTGAATATGATAAT+AGG - chr4_3:2216234-2216253 Msa0624260:CDS 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2216249-2216268 Msa0624260:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG - chr4_3:2216265-2216284 Msa0624260:CDS 30.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2214770-2214789 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2214771-2214790 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2214770-2214789 Msa0624260:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2215735-2215754 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2215743-2215762 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2215830-2215849 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2215831-2215850 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2215874-2215893 Msa0624260:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2215911-2215930 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG - chr4_3:2216071-2216090 Msa0624260:CDS 35.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2214770-2214789 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2214771-2214790 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2214770-2214789 Msa0624260:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2215735-2215754 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2215743-2215762 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2215830-2215849 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2215831-2215850 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2215874-2215893 Msa0624260:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2215911-2215930 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG - chr4_3:2216071-2216090 Msa0624260:CDS 35.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2214776-2214795 Msa0624260:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2214863-2214882 Msa0624260:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG - chr4_3:2214870-2214889 Msa0624260:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2215029-2215048 Msa0624260:CDS 40.0%
! AATTACAAGTGTCGCTGTGT+CGG - chr4_3:2215249-2215268 Msa0624260:intron 40.0%
TATGAAGCACAGACAATCCT+CGG + chr4_3:2215316-2215335 None:intergenic 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2215799-2215818 Msa0624260:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2215942-2215961 Msa0624260:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2215957-2215976 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2216008-2216027 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2216039-2216058 Msa0624260:intron 40.0%
CAAAGATACAGATGTTGGTG+AGG - chr4_3:2216103-2216122 Msa0624260:CDS 40.0%
!! TTCAAAAGGGGCATTGTACT+GGG + chr4_3:2216225-2216244 None:intergenic 40.0%
!! ATTCAAAAGGGGCATTGTAC+TGG + chr4_3:2216226-2216245 None:intergenic 40.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2214776-2214795 Msa0624260:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2214863-2214882 Msa0624260:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG - chr4_3:2214870-2214889 Msa0624260:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2215029-2215048 Msa0624260:CDS 40.0%
! AATTACAAGTGTCGCTGTGT+CGG - chr4_3:2215249-2215268 Msa0624260:intron 40.0%
TATGAAGCACAGACAATCCT+CGG + chr4_3:2215316-2215335 None:intergenic 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2215799-2215818 Msa0624260:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2215942-2215961 Msa0624260:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2215957-2215976 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2216008-2216027 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2216039-2216058 Msa0624260:intron 40.0%
CAAAGATACAGATGTTGGTG+AGG - chr4_3:2216103-2216122 Msa0624260:CDS 40.0%
!! TTCAAAAGGGGCATTGTACT+GGG + chr4_3:2216225-2216244 None:intergenic 40.0%
!! ATTCAAAAGGGGCATTGTAC+TGG + chr4_3:2216226-2216245 None:intergenic 40.0%
! CTACTAGAACTGGTTTCAGG+AGG - chr4_3:2214873-2214892 Msa0624260:CDS 45.0%
GGGAGTTGAAAAATCGTGTC+TGG - chr4_3:2215134-2215153 Msa0624260:intron 45.0%
ACTGAGATACACCTAATCCG+AGG - chr4_3:2215296-2215315 Msa0624260:intron 45.0%
GAGGATTGTCTGTGCTTCAT+AGG - chr4_3:2215315-2215334 Msa0624260:intron 45.0%
TTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2215320-2215339 Msa0624260:intron 45.0%
!! ACTCTTCCCACTTTTCACGT+TGG - chr4_3:2215456-2215475 Msa0624260:intron 45.0%
!! CTCTTCCCACTTTTCACGTT+GGG - chr4_3:2215457-2215476 Msa0624260:intron 45.0%
CACTTCCCAACGTGAAAAGT+GGG + chr4_3:2215465-2215484 None:intergenic 45.0%
ACACTTCCCAACGTGAAAAG+TGG + chr4_3:2215466-2215485 None:intergenic 45.0%
! TGTGTGTTTGGTTTCACGGT+GGG + chr4_3:2215731-2215750 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2215936-2215955 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2216035-2216054 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG - chr4_3:2216074-2216093 Msa0624260:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2216144-2216163 Msa0624260:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2216156-2216175 None:intergenic 45.0%
ATTGAACAAAGCCGTAGAGC+TGG - chr4_3:2216176-2216195 Msa0624260:CDS 45.0%
! CTACTAGAACTGGTTTCAGG+AGG - chr4_3:2214873-2214892 Msa0624260:CDS 45.0%
GGGAGTTGAAAAATCGTGTC+TGG - chr4_3:2215134-2215153 Msa0624260:intron 45.0%
ACTGAGATACACCTAATCCG+AGG - chr4_3:2215296-2215315 Msa0624260:intron 45.0%
GAGGATTGTCTGTGCTTCAT+AGG - chr4_3:2215315-2215334 Msa0624260:intron 45.0%
TTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2215320-2215339 Msa0624260:intron 45.0%
!! ACTCTTCCCACTTTTCACGT+TGG - chr4_3:2215456-2215475 Msa0624260:intron 45.0%
!! CTCTTCCCACTTTTCACGTT+GGG - chr4_3:2215457-2215476 Msa0624260:intron 45.0%
CACTTCCCAACGTGAAAAGT+GGG + chr4_3:2215465-2215484 None:intergenic 45.0%
ACACTTCCCAACGTGAAAAG+TGG + chr4_3:2215466-2215485 None:intergenic 45.0%
! TGTGTGTTTGGTTTCACGGT+GGG + chr4_3:2215731-2215750 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2215936-2215955 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2216035-2216054 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG - chr4_3:2216074-2216093 Msa0624260:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2216144-2216163 Msa0624260:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2216156-2216175 None:intergenic 45.0%
ATTGAACAAAGCCGTAGAGC+TGG - chr4_3:2216176-2216195 Msa0624260:CDS 45.0%
!! TGTTGTGCTGGTTACAGCCA+TGG + chr4_3:2214657-2214676 None:intergenic 50.0%
TGGCTGTAACCAGCACAACA+TGG - chr4_3:2214657-2214676 Msa0624260:CDS 50.0%
TGAGAGCTTCCATGTTGTGC+TGG + chr4_3:2214669-2214688 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2214749-2214768 None:intergenic 50.0%
! GTGTCTGGAGCTATGAAGCA+CGG - chr4_3:2215149-2215168 Msa0624260:intron 50.0%
GCACAGACAATCCTCGGATT+AGG + chr4_3:2215310-2215329 None:intergenic 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2215732-2215751 None:intergenic 50.0%
! TTGCAGGAGGTGGATTTGCT+TGG + chr4_3:2216019-2216038 None:intergenic 50.0%
AGCAAATCCACCTCCTGCAA+AGG - chr4_3:2216019-2216038 Msa0624260:intron 50.0%
GCAAATCCACCTCCTGCAAA+GGG - chr4_3:2216020-2216039 Msa0624260:intron 50.0%
ACATGAAGACCCTTTGCAGG+AGG + chr4_3:2216032-2216051 None:intergenic 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2216134-2216153 Msa0624260:CDS 50.0%
CTGAAGCATGACCAGCTCTA+CGG + chr4_3:2216190-2216209 None:intergenic 50.0%
!! TGTTGTGCTGGTTACAGCCA+TGG + chr4_3:2214657-2214676 None:intergenic 50.0%
TGGCTGTAACCAGCACAACA+TGG - chr4_3:2214657-2214676 Msa0624260:CDS 50.0%
TGAGAGCTTCCATGTTGTGC+TGG + chr4_3:2214669-2214688 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2214749-2214768 None:intergenic 50.0%
! GTGTCTGGAGCTATGAAGCA+CGG - chr4_3:2215149-2215168 Msa0624260:intron 50.0%
GCACAGACAATCCTCGGATT+AGG + chr4_3:2215310-2215329 None:intergenic 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2215732-2215751 None:intergenic 50.0%
! TTGCAGGAGGTGGATTTGCT+TGG + chr4_3:2216019-2216038 None:intergenic 50.0%
AGCAAATCCACCTCCTGCAA+AGG - chr4_3:2216019-2216038 Msa0624260:intron 50.0%
GCAAATCCACCTCCTGCAAA+GGG - chr4_3:2216020-2216039 Msa0624260:intron 50.0%
ACATGAAGACCCTTTGCAGG+AGG + chr4_3:2216032-2216051 None:intergenic 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2216134-2216153 Msa0624260:CDS 50.0%
CTGAAGCATGACCAGCTCTA+CGG + chr4_3:2216190-2216209 None:intergenic 50.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2215155-2215174 Msa0624260:intron 55.0%
ATGAAGCACGGATGCGGACA+CGG - chr4_3:2215161-2215180 Msa0624260:intron 55.0%
TGAAGACCCTTTGCAGGAGG+TGG + chr4_3:2216029-2216048 None:intergenic 55.0%
! TGAGGAAGCTGCAGCGTTGA+AGG - chr4_3:2216121-2216140 Msa0624260:CDS 55.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2215155-2215174 Msa0624260:intron 55.0%
ATGAAGCACGGATGCGGACA+CGG - chr4_3:2215161-2215180 Msa0624260:intron 55.0%
TGAAGACCCTTTGCAGGAGG+TGG + chr4_3:2216029-2216048 None:intergenic 55.0%
! TGAGGAAGCTGCAGCGTTGA+AGG - chr4_3:2216121-2216140 Msa0624260:CDS 55.0%
ATGCGGACACGGACACGACA+CGG - chr4_3:2215172-2215191 Msa0624260:intron 60.0%
ATGCGGACACGGACACGACA+CGG - chr4_3:2215172-2215191 Msa0624260:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 2214647 2216310 2214647 ID=Msa0624260;Name=Msa0624260
chr4_3 mRNA 2214647 2216310 2214647 ID=Msa0624260-mRNA-1;Parent=Msa0624260;Name=Msa0624260-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|1|0.5|1|1|1|2|0|227
chr4_3 exon 2214647 2215082 2214647 ID=Msa0624260-mRNA-1:exon:611;Parent=Msa0624260-mRNA-1
chr4_3 exon 2216063 2216310 2216063 ID=Msa0624260-mRNA-1:exon:610;Parent=Msa0624260-mRNA-1
chr4_3 CDS 2216063 2216310 2216063 ID=Msa0624260-mRNA-1:cds;Parent=Msa0624260-mRNA-1
chr4_3 CDS 2214647 2215082 2214647 ID=Msa0624260-mRNA-1:cds;Parent=Msa0624260-mRNA-1
Gene Sequence

>Msa0624260

ATGCAATCCATGGCTGTAACCAGCACAACATGGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCAGGTATTCTTTCATATGATATTGTACCATGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACTTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCAGGAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCTCCTGCAAAGGGTCTTCATGTTCAAAGATGGAAAACTGTGTATGCAGCAGTTAGACAATTTGGTGGTTTTGTCAAAGATACAGATGTTGGTGAGGAAGCTGCAGCGTTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCGTAGAGCTGGTCATGCTTCAGTTTACTCTGTTGCCCAGTACAATGCCCCTTTTGAATATGATAATAGGGTGAATGAGATATGGTTCTTGTTTGATTTGGAAAATGGTTTGCATTCTATGTGA

Protein sequence

>Msa0624260

MQSMAVTSTTWKLSLFLTLISISLSGILSYDIVPCKRIECPNYDVIEAGNGYEIRLYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKTVYAAVRQFGGFVKDTDVGEEAAALKDSIAGTKWSSAIEQSRRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM*