AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190300 MtrunA17_Chr8g0358961 96.476 227 8 0 1 227 1 227 1.93e-168 462
Msa1190300 MtrunA17_Chr4g0058821 42.222 180 95 4 39 215 23 196 9.23e-35 123
Msa1190300 MtrunA17_Chr8g0368391 36.058 208 119 5 13 215 5 203 1.64e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190300 AT1G17100.1 62.632 190 68 1 35 221 42 231 2.30e-89 263
Msa1190300 AT1G78450.1 47.768 224 104 4 4 222 1 216 9.62e-70 213
Msa1190300 AT1G78460.1 45.455 187 94 3 35 220 40 219 7.55e-52 167

Find 49 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTCAATTTCATTATC+AGG 0.236313 8_1:+33188559 Msa1190300:CDS
AAGCTACTAGAACTGGTTTC+AGG 0.240236 8_1:+33188728 Msa1190300:CDS
TTCTTGTTTGATTTGGAAAA+TGG 0.250380 8_1:+33190130 Msa1190300:CDS
GACTTTATAATTCGTCTGTT+TGG 0.265253 8_1:+33188668 Msa1190300:CDS
GGATTTGCTTGGTTCACTTT+TGG 0.290356 8_1:-33189863 None:intergenic
TAGGCTATTTGATTACATTC+AGG 0.303343 8_1:+33189730 Msa1190300:intron
GATATGGTTCTTGTTTGATT+TGG 0.325272 8_1:+33190123 Msa1190300:CDS
TGAACATGAAGACCCTTTGC+AGG 0.337320 8_1:-33189890 None:intergenic
AATGTCTTGAATAGGAGAAT+TGG 0.347748 8_1:-33188695 None:intergenic
TATGCAGCAGTTAGACAATT+TGG 0.366995 8_1:+33189929 Msa1190300:CDS
ATTCAAAAGGGGCATTGTAC+TGG 0.369508 8_1:-33190081 None:intergenic
CTTGTTGAAGCTACTAGAAC+TGG 0.386778 8_1:+33188721 Msa1190300:CDS
ACAAATGAAGACTCACAAAA+TGG 0.387846 8_1:-33189824 None:intergenic
AGCTTCTATGACATCATAGT+TGG 0.390370 8_1:-33188626 None:intergenic
TTGCAGGAGGTGGATTTGCT+TGG 0.398401 8_1:-33189874 None:intergenic
ACCCTATTATCATATTCAAA+AGG 0.401311 8_1:-33190094 None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG 0.403479 8_1:-33188703 None:intergenic
CCCTATTATCATATTCAAAA+GGG 0.409363 8_1:-33190093 None:intergenic
AGGCTATTTGATTACATTCA+GGG 0.450840 8_1:+33189731 Msa1190300:intron
TGAAGACCCTTTGCAGGAGG+TGG 0.452104 8_1:-33189884 None:intergenic
TGAGGAAGCTGCAGCGTTGA+AGG 0.460765 8_1:+33189979 Msa1190300:CDS
AACTATGATGTCATAGAAGC+TGG 0.463929 8_1:+33188628 Msa1190300:CDS
ATAATAGGGTGAATGAGATA+TGG 0.465751 8_1:+33190107 Msa1190300:CDS
GCGTTGAAGGACAGTATTGC+CGG 0.485645 8_1:+33189992 Msa1190300:CDS
GATGTCATAGAAGCTGGAAA+TGG 0.490076 8_1:+33188634 Msa1190300:CDS
AGGGTCTTCATGTTCAAAGA+TGG 0.509198 8_1:+33189897 Msa1190300:CDS
AGCAAATCCACCTCCTGCAA+AGG 0.509519 8_1:+33189877 Msa1190300:CDS
GCAAATCCACCTCCTGCAAA+GGG 0.510194 8_1:+33189878 Msa1190300:CDS
GGACACTCTATGCGTTTGCA+TGG 0.518091 8_1:-33188604 None:intergenic
TGTTGTGCTGGTTACAGCCA+TGG 0.533600 8_1:-33188512 None:intergenic
GGTAAGACTTCAGAGAGAAC+AGG 0.536541 8_1:-33189791 None:intergenic
TTCAAAAGGGGCATTGTACT+GGG 0.538233 8_1:-33190080 None:intergenic
TGAGAGCTTCCATGTTGTGC+TGG 0.538362 8_1:-33188524 None:intergenic
AACTCGAAGCATGCAATCCA+TGG 0.545237 8_1:+33188495 None:intergenic
ATTGAACAAAGCCGTAGAGC+TGG 0.550259 8_1:+33190034 Msa1190300:CDS
GCTTCTATGACATCATAGTT+GGG 0.553146 8_1:-33188625 None:intergenic
TCACAAAATGGTCCATCACT+TGG 0.562399 8_1:-33189812 None:intergenic
TCTGAAGTCTTACCAAGTGA+TGG 0.564116 8_1:+33189800 Msa1190300:CDS
CTGAAGCATGACCAGCTCTA+CGG 0.568630 8_1:-33190045 None:intergenic
GCAGCAGTTAGACAATTTGG+TGG 0.569529 8_1:+33189932 Msa1190300:CDS
GGCTATTTGATTACATTCAG+GGG 0.574090 8_1:+33189732 Msa1190300:intron
TTTGTCAAAGATACAGATGT+TGG 0.582094 8_1:+33189956 Msa1190300:CDS
AGCAGAAGACCACTTAGTAC+CGG 0.588835 8_1:-33190011 None:intergenic
ACAGTATTGCCGGTACTAAG+TGG 0.612734 8_1:+33190002 Msa1190300:CDS
TGGCTGTAACCAGCACAACA+TGG 0.625059 8_1:+33188515 Msa1190300:CDS
CCTATTATCATATTCAAAAG+GGG 0.627523 8_1:-33190092 None:intergenic
CAAAGATACAGATGTTGGTG+AGG 0.634324 8_1:+33189961 Msa1190300:CDS
ACATGAAGACCCTTTGCAGG+AGG 0.641553 8_1:-33189887 None:intergenic
CTACTAGAACTGGTTTCAGG+AGG 0.662955 8_1:+33188731 Msa1190300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTAAACATCATATTTTT+TGG - chr8_1:33188840-33188859 None:intergenic 15.0%
!! AAAGTTGAATACATATAAAA+GGG + chr8_1:33188972-33188991 Msa1190300:intron 15.0%
!! AATGTGAAATGATTTATATT+TGG + chr8_1:33189423-33189442 Msa1190300:intron 15.0%
!!! TTAATCTTTTTCTTTTTCTT+AGG + chr8_1:33189711-33189730 Msa1190300:intron 15.0%
!!! AAGTTAAACATCATATTTTT+TGG - chr8_1:33188840-33188859 None:intergenic 15.0%
!! AAAGTTGAATACATATAAAA+GGG + chr8_1:33188972-33188991 Msa1190300:intron 15.0%
!! AATGTGAAATGATTTATATT+TGG + chr8_1:33189423-33189442 Msa1190300:intron 15.0%
!!! TTAATCTTTTTCTTTTTCTT+AGG + chr8_1:33189711-33189730 Msa1190300:intron 15.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG + chr8_1:33188773-33188792 Msa1190300:intron 20.0%
!! GAAAGTTGAATACATATAAA+AGG + chr8_1:33188971-33188990 Msa1190300:intron 20.0%
!!! AAATTAATTGTCTCTAGAAT+GGG - chr8_1:33189507-33189526 None:intergenic 20.0%
!!! AAAATTAATTGTCTCTAGAA+TGG - chr8_1:33189508-33189527 None:intergenic 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG + chr8_1:33188773-33188792 Msa1190300:intron 20.0%
!! GAAAGTTGAATACATATAAA+AGG + chr8_1:33188971-33188990 Msa1190300:intron 20.0%
!!! AAATTAATTGTCTCTAGAAT+GGG - chr8_1:33189507-33189526 None:intergenic 20.0%
!!! AAAATTAATTGTCTCTAGAA+TGG - chr8_1:33189508-33189527 None:intergenic 20.0%
! CTTATCTCAATTTCATTATC+AGG + chr8_1:33188559-33188578 Msa1190300:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr8_1:33189067-33189086 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG - chr8_1:33189222-33189241 None:intergenic 25.0%
!!! ACAATTGATTTTGACATGTT+TGG - chr8_1:33189277-33189296 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG - chr8_1:33189543-33189562 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG + chr8_1:33189546-33189565 Msa1190300:intron 25.0%
! TGAACTTAATGATCATTCAT+TGG - chr8_1:33189617-33189636 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG + chr8_1:33189651-33189670 Msa1190300:intron 25.0%
! AATCAAGTTTAGTAACTCTT+CGG - chr8_1:33189693-33189712 None:intergenic 25.0%
! CCTATTATCATATTCAAAAG+GGG - chr8_1:33190095-33190114 None:intergenic 25.0%
! CCCTATTATCATATTCAAAA+GGG - chr8_1:33190096-33190115 None:intergenic 25.0%
!! CCCTTTTGAATATGATAATA+GGG + chr8_1:33190093-33190112 Msa1190300:CDS 25.0%
! ACCCTATTATCATATTCAAA+AGG - chr8_1:33190097-33190116 None:intergenic 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG + chr8_1:33190130-33190149 Msa1190300:CDS 25.0%
! CTTATCTCAATTTCATTATC+AGG + chr8_1:33188559-33188578 Msa1190300:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr8_1:33189067-33189086 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG - chr8_1:33189222-33189241 None:intergenic 25.0%
!!! ACAATTGATTTTGACATGTT+TGG - chr8_1:33189277-33189296 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG - chr8_1:33189543-33189562 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG + chr8_1:33189546-33189565 Msa1190300:intron 25.0%
! TGAACTTAATGATCATTCAT+TGG - chr8_1:33189617-33189636 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG + chr8_1:33189651-33189670 Msa1190300:intron 25.0%
! AATCAAGTTTAGTAACTCTT+CGG - chr8_1:33189693-33189712 None:intergenic 25.0%
! CCTATTATCATATTCAAAAG+GGG - chr8_1:33190095-33190114 None:intergenic 25.0%
! CCCTATTATCATATTCAAAA+GGG - chr8_1:33190096-33190115 None:intergenic 25.0%
!! CCCTTTTGAATATGATAATA+GGG + chr8_1:33190093-33190112 Msa1190300:CDS 25.0%
! ACCCTATTATCATATTCAAA+AGG - chr8_1:33190097-33190116 None:intergenic 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG + chr8_1:33190130-33190149 Msa1190300:CDS 25.0%
GACTTTATAATTCGTCTGTT+TGG + chr8_1:33188668-33188687 Msa1190300:CDS 30.0%
AATGTCTTGAATAGGAGAAT+TGG - chr8_1:33188698-33188717 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG - chr8_1:33188706-33188725 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG + chr8_1:33189730-33189749 Msa1190300:intron 30.0%
AGGCTATTTGATTACATTCA+GGG + chr8_1:33189731-33189750 Msa1190300:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG - chr8_1:33189827-33189846 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG + chr8_1:33189956-33189975 Msa1190300:CDS 30.0%
! CCCCTTTTGAATATGATAAT+AGG + chr8_1:33190092-33190111 Msa1190300:CDS 30.0%
ATAATAGGGTGAATGAGATA+TGG + chr8_1:33190107-33190126 Msa1190300:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG + chr8_1:33190123-33190142 Msa1190300:CDS 30.0%
GACTTTATAATTCGTCTGTT+TGG + chr8_1:33188668-33188687 Msa1190300:CDS 30.0%
AATGTCTTGAATAGGAGAAT+TGG - chr8_1:33188698-33188717 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG - chr8_1:33188706-33188725 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG + chr8_1:33189730-33189749 Msa1190300:intron 30.0%
AGGCTATTTGATTACATTCA+GGG + chr8_1:33189731-33189750 Msa1190300:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG - chr8_1:33189827-33189846 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG + chr8_1:33189956-33189975 Msa1190300:CDS 30.0%
! CCCCTTTTGAATATGATAAT+AGG + chr8_1:33190092-33190111 Msa1190300:CDS 30.0%
ATAATAGGGTGAATGAGATA+TGG + chr8_1:33190107-33190126 Msa1190300:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG + chr8_1:33190123-33190142 Msa1190300:CDS 30.0%
GCTTCTATGACATCATAGTT+GGG - chr8_1:33188628-33188647 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG - chr8_1:33188629-33188648 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG + chr8_1:33188628-33188647 Msa1190300:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG - chr8_1:33189593-33189612 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG - chr8_1:33189601-33189620 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG - chr8_1:33189688-33189707 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG - chr8_1:33189689-33189708 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG + chr8_1:33189732-33189751 Msa1190300:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG - chr8_1:33189769-33189788 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG + chr8_1:33189929-33189948 Msa1190300:CDS 35.0%
GCTTCTATGACATCATAGTT+GGG - chr8_1:33188628-33188647 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG - chr8_1:33188629-33188648 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG + chr8_1:33188628-33188647 Msa1190300:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG - chr8_1:33189593-33189612 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG - chr8_1:33189601-33189620 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG - chr8_1:33189688-33189707 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG - chr8_1:33189689-33189708 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG + chr8_1:33189732-33189751 Msa1190300:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG - chr8_1:33189769-33189788 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG + chr8_1:33189929-33189948 Msa1190300:CDS 35.0%
GATGTCATAGAAGCTGGAAA+TGG + chr8_1:33188634-33188653 Msa1190300:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG + chr8_1:33188721-33188740 Msa1190300:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG + chr8_1:33188728-33188747 Msa1190300:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG + chr8_1:33188887-33188906 Msa1190300:intron 40.0%
! AATTACAAGTGTCGCTGTGT+CGG + chr8_1:33189107-33189126 Msa1190300:intron 40.0%
TATGAAGCACAGACAATCCT+CGG - chr8_1:33189174-33189193 None:intergenic 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG + chr8_1:33189657-33189676 Msa1190300:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG + chr8_1:33189800-33189819 Msa1190300:CDS 40.0%
TCACAAAATGGTCCATCACT+TGG - chr8_1:33189815-33189834 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG - chr8_1:33189866-33189885 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG + chr8_1:33189897-33189916 Msa1190300:CDS 40.0%
CAAAGATACAGATGTTGGTG+AGG + chr8_1:33189961-33189980 Msa1190300:CDS 40.0%
!! TTCAAAAGGGGCATTGTACT+GGG - chr8_1:33190083-33190102 None:intergenic 40.0%
!! ATTCAAAAGGGGCATTGTAC+TGG - chr8_1:33190084-33190103 None:intergenic 40.0%
GATGTCATAGAAGCTGGAAA+TGG + chr8_1:33188634-33188653 Msa1190300:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG + chr8_1:33188721-33188740 Msa1190300:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG + chr8_1:33188728-33188747 Msa1190300:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG + chr8_1:33188887-33188906 Msa1190300:intron 40.0%
! AATTACAAGTGTCGCTGTGT+CGG + chr8_1:33189107-33189126 Msa1190300:intron 40.0%
TATGAAGCACAGACAATCCT+CGG - chr8_1:33189174-33189193 None:intergenic 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG + chr8_1:33189657-33189676 Msa1190300:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG + chr8_1:33189800-33189819 Msa1190300:CDS 40.0%
TCACAAAATGGTCCATCACT+TGG - chr8_1:33189815-33189834 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG - chr8_1:33189866-33189885 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG + chr8_1:33189897-33189916 Msa1190300:CDS 40.0%
CAAAGATACAGATGTTGGTG+AGG + chr8_1:33189961-33189980 Msa1190300:CDS 40.0%
!! TTCAAAAGGGGCATTGTACT+GGG - chr8_1:33190083-33190102 None:intergenic 40.0%
!! ATTCAAAAGGGGCATTGTAC+TGG - chr8_1:33190084-33190103 None:intergenic 40.0%
! CTACTAGAACTGGTTTCAGG+AGG + chr8_1:33188731-33188750 Msa1190300:CDS 45.0%
GGGAGTTGAAAAATCGTGTC+TGG + chr8_1:33188992-33189011 Msa1190300:intron 45.0%
ACTGAGATACACCTAATCCG+AGG + chr8_1:33189154-33189173 Msa1190300:intron 45.0%
GAGGATTGTCTGTGCTTCAT+AGG + chr8_1:33189173-33189192 Msa1190300:intron 45.0%
TTGTCTGTGCTTCATAGGTC+TGG + chr8_1:33189178-33189197 Msa1190300:intron 45.0%
!! ACTCTTCCCACTTTTCACGT+TGG + chr8_1:33189314-33189333 Msa1190300:intron 45.0%
!! CTCTTCCCACTTTTCACGTT+GGG + chr8_1:33189315-33189334 Msa1190300:intron 45.0%
CACTTCCCAACGTGAAAAGT+GGG - chr8_1:33189323-33189342 None:intergenic 45.0%
ACACTTCCCAACGTGAAAAG+TGG - chr8_1:33189324-33189343 None:intergenic 45.0%
! TGTGTGTTTGGTTTCACGGT+GGG - chr8_1:33189589-33189608 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG - chr8_1:33189794-33189813 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG - chr8_1:33189893-33189912 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG + chr8_1:33189932-33189951 Msa1190300:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG + chr8_1:33190002-33190021 Msa1190300:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG - chr8_1:33190014-33190033 None:intergenic 45.0%
ATTGAACAAAGCCGTAGAGC+TGG + chr8_1:33190034-33190053 Msa1190300:CDS 45.0%
! CTACTAGAACTGGTTTCAGG+AGG + chr8_1:33188731-33188750 Msa1190300:CDS 45.0%
GGGAGTTGAAAAATCGTGTC+TGG + chr8_1:33188992-33189011 Msa1190300:intron 45.0%
ACTGAGATACACCTAATCCG+AGG + chr8_1:33189154-33189173 Msa1190300:intron 45.0%
GAGGATTGTCTGTGCTTCAT+AGG + chr8_1:33189173-33189192 Msa1190300:intron 45.0%
TTGTCTGTGCTTCATAGGTC+TGG + chr8_1:33189178-33189197 Msa1190300:intron 45.0%
!! ACTCTTCCCACTTTTCACGT+TGG + chr8_1:33189314-33189333 Msa1190300:intron 45.0%
!! CTCTTCCCACTTTTCACGTT+GGG + chr8_1:33189315-33189334 Msa1190300:intron 45.0%
CACTTCCCAACGTGAAAAGT+GGG - chr8_1:33189323-33189342 None:intergenic 45.0%
ACACTTCCCAACGTGAAAAG+TGG - chr8_1:33189324-33189343 None:intergenic 45.0%
! TGTGTGTTTGGTTTCACGGT+GGG - chr8_1:33189589-33189608 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG - chr8_1:33189794-33189813 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG - chr8_1:33189893-33189912 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG + chr8_1:33189932-33189951 Msa1190300:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG + chr8_1:33190002-33190021 Msa1190300:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG - chr8_1:33190014-33190033 None:intergenic 45.0%
ATTGAACAAAGCCGTAGAGC+TGG + chr8_1:33190034-33190053 Msa1190300:CDS 45.0%
!! TGTTGTGCTGGTTACAGCCA+TGG - chr8_1:33188515-33188534 None:intergenic 50.0%
TGGCTGTAACCAGCACAACA+TGG + chr8_1:33188515-33188534 Msa1190300:CDS 50.0%
TGAGAGCTTCCATGTTGTGC+TGG - chr8_1:33188527-33188546 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG - chr8_1:33188607-33188626 None:intergenic 50.0%
! GTGTCTGGAGCTATGAAGCA+CGG + chr8_1:33189007-33189026 Msa1190300:intron 50.0%
GCACAGACAATCCTCGGATT+AGG - chr8_1:33189168-33189187 None:intergenic 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG - chr8_1:33189590-33189609 None:intergenic 50.0%
! TTGCAGGAGGTGGATTTGCT+TGG - chr8_1:33189877-33189896 None:intergenic 50.0%
AGCAAATCCACCTCCTGCAA+AGG + chr8_1:33189877-33189896 Msa1190300:CDS 50.0%
GCAAATCCACCTCCTGCAAA+GGG + chr8_1:33189878-33189897 Msa1190300:CDS 50.0%
ACATGAAGACCCTTTGCAGG+AGG - chr8_1:33189890-33189909 None:intergenic 50.0%
GCGTTGAAGGACAGTATTGC+CGG + chr8_1:33189992-33190011 Msa1190300:CDS 50.0%
CTGAAGCATGACCAGCTCTA+CGG - chr8_1:33190048-33190067 None:intergenic 50.0%
!! TGTTGTGCTGGTTACAGCCA+TGG - chr8_1:33188515-33188534 None:intergenic 50.0%
TGGCTGTAACCAGCACAACA+TGG + chr8_1:33188515-33188534 Msa1190300:CDS 50.0%
TGAGAGCTTCCATGTTGTGC+TGG - chr8_1:33188527-33188546 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG - chr8_1:33188607-33188626 None:intergenic 50.0%
! GTGTCTGGAGCTATGAAGCA+CGG + chr8_1:33189007-33189026 Msa1190300:intron 50.0%
GCACAGACAATCCTCGGATT+AGG - chr8_1:33189168-33189187 None:intergenic 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG - chr8_1:33189590-33189609 None:intergenic 50.0%
! TTGCAGGAGGTGGATTTGCT+TGG - chr8_1:33189877-33189896 None:intergenic 50.0%
AGCAAATCCACCTCCTGCAA+AGG + chr8_1:33189877-33189896 Msa1190300:CDS 50.0%
GCAAATCCACCTCCTGCAAA+GGG + chr8_1:33189878-33189897 Msa1190300:CDS 50.0%
ACATGAAGACCCTTTGCAGG+AGG - chr8_1:33189890-33189909 None:intergenic 50.0%
GCGTTGAAGGACAGTATTGC+CGG + chr8_1:33189992-33190011 Msa1190300:CDS 50.0%
CTGAAGCATGACCAGCTCTA+CGG - chr8_1:33190048-33190067 None:intergenic 50.0%
GGAGCTATGAAGCACGGATG+CGG + chr8_1:33189013-33189032 Msa1190300:intron 55.0%
ATGAAGCACGGATGCGGACA+CGG + chr8_1:33189019-33189038 Msa1190300:intron 55.0%
TGAAGACCCTTTGCAGGAGG+TGG - chr8_1:33189887-33189906 None:intergenic 55.0%
! TGAGGAAGCTGCAGCGTTGA+AGG + chr8_1:33189979-33189998 Msa1190300:CDS 55.0%
GGAGCTATGAAGCACGGATG+CGG + chr8_1:33189013-33189032 Msa1190300:intron 55.0%
ATGAAGCACGGATGCGGACA+CGG + chr8_1:33189019-33189038 Msa1190300:intron 55.0%
TGAAGACCCTTTGCAGGAGG+TGG - chr8_1:33189887-33189906 None:intergenic 55.0%
! TGAGGAAGCTGCAGCGTTGA+AGG + chr8_1:33189979-33189998 Msa1190300:CDS 55.0%
ATGCGGACACGGACACGACA+CGG + chr8_1:33189030-33189049 Msa1190300:intron 60.0%
ATGCGGACACGGACACGACA+CGG + chr8_1:33189030-33189049 Msa1190300:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 33188505 33190168 33188505 ID=Msa1190300;Name=Msa1190300
chr8_1 mRNA 33188505 33190168 33188505 ID=Msa1190300-mRNA-1;Parent=Msa1190300;Name=Msa1190300-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|1|0.5|1|1|1|2|0|227
chr8_1 exon 33188505 33188752 33188505 ID=Msa1190300-mRNA-1:exon:11197;Parent=Msa1190300-mRNA-1
chr8_1 exon 33189733 33190168 33189733 ID=Msa1190300-mRNA-1:exon:11198;Parent=Msa1190300-mRNA-1
chr8_1 CDS 33188505 33188752 33188505 ID=Msa1190300-mRNA-1:cds;Parent=Msa1190300-mRNA-1
chr8_1 CDS 33189733 33190168 33189733 ID=Msa1190300-mRNA-1:cds;Parent=Msa1190300-mRNA-1
Gene Sequence

>Msa1190300

ATGCAATCCATGGCTGTAACCAGCACAACATGGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCAGGTATTCTTTCATATGATATTGTACCATGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACTTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCAGGAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCTCCTGCAAAGGGTCTTCATGTTCAAAGATGGAAAACTGTGTATGCAGCAGTTAGACAATTTGGTGGTTTTGTCAAAGATACAGATGTTGGTGAGGAAGCTGCAGCGTTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCGTAGAGCTGGTCATGCTTCAGTTTACTCTGTTGCCCAGTACAATGCCCCTTTTGAATATGATAATAGGGTGAATGAGATATGGTTCTTGTTTGATTTGGAAAATGGTTTGCATTCTATGTGA

Protein sequence

>Msa1190300

MQSMAVTSTTWKLSLFLTLISISLSGILSYDIVPCKRIECPNYDVIEAGNGYEIRLYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKTVYAAVRQFGGFVKDTDVGEEAAALKDSIAGTKWSSAIEQSRRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM*